Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922770 | XP_013452820.1 | 94.022 | 184 | 8 | 2 | 1 | 182 | 1 | 183 | 5.49e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922770 | sp|Q9FX45|ORRM6_ARATH | 75.904 | 83 | 20 | 0 | 94 | 176 | 77 | 159 | 1.16e-41 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0922770 | 0.814605 | 1.414717e-51 | -8.615850e-47 |
| Msa0011850 | Msa0922770 | 0.831254 | 1.852575e-55 | -8.615850e-47 |
| Msa0030000 | Msa0922770 | 0.831947 | 1.250352e-55 | -8.615850e-47 |
| Msa0041540 | Msa0922770 | 0.822007 | 2.982687e-53 | -8.615850e-47 |
| Msa0113160 | Msa0922770 | 0.805659 | 1.199997e-49 | -8.615850e-47 |
| Msa0642650 | Msa0922770 | 0.804747 | 1.861732e-49 | -8.615850e-47 |
| Msa0651350 | Msa0922770 | 0.802103 | 6.576364e-49 | -8.615850e-47 |
| Msa0670980 | Msa0922770 | 0.800258 | 1.568224e-48 | -8.615850e-47 |
| Msa0681890 | Msa0922770 | 0.828802 | 7.340427e-55 | -8.615850e-47 |
| Msa0730180 | Msa0922770 | 0.812517 | 4.073314e-51 | -8.615850e-47 |
| Msa0125230 | Msa0922770 | 0.806211 | 9.182723e-50 | -8.615850e-47 |
| Msa0135980 | Msa0922770 | 0.807215 | 5.636446e-50 | -8.615850e-47 |
| Msa0141830 | Msa0922770 | 0.801102 | 1.055072e-48 | -8.615850e-47 |
| Msa0203520 | Msa0922770 | 0.802482 | 5.493821e-49 | -8.615850e-47 |
| Msa0207000 | Msa0922770 | 0.809092 | 2.245088e-50 | -8.615850e-47 |
| Msa0208930 | Msa0922770 | 0.800262 | 1.565317e-48 | -8.615850e-47 |
| Msa0230400 | Msa0922770 | 0.800308 | 1.531911e-48 | -8.615850e-47 |
| Msa0380310 | Msa0922770 | 0.817972 | 2.498464e-52 | -8.615850e-47 |
| Msa0380420 | Msa0922770 | 0.810609 | 1.058604e-50 | -8.615850e-47 |
| Msa0417630 | Msa0922770 | 0.815245 | 1.020540e-51 | -8.615850e-47 |
| Msa0469910 | Msa0922770 | -0.800554 | 1.364784e-48 | -8.615850e-47 |
| Msa0470610 | Msa0922770 | 0.803228 | 3.853619e-49 | -8.615850e-47 |
| Msa0472380 | Msa0922770 | 0.829677 | 4.503463e-55 | -8.615850e-47 |
| Msa0477780 | Msa0922770 | 0.814984 | 1.166437e-51 | -8.615850e-47 |
| Msa0246690 | Msa0922770 | 0.835735 | 1.411757e-56 | -8.615850e-47 |
| Msa0257310 | Msa0922770 | 0.838716 | 2.437398e-57 | -8.615850e-47 |
| Msa0274780 | Msa0922770 | 0.803524 | 3.345883e-49 | -8.615850e-47 |
| Msa0524090 | Msa0922770 | 0.813364 | 2.657501e-51 | -8.615850e-47 |
| Msa0524120 | Msa0922770 | 0.813137 | 2.980854e-51 | -8.615850e-47 |
| Msa0854570 | Msa0922770 | 0.820535 | 6.514975e-53 | -8.615850e-47 |
| Msa0922770 | Msa0925160 | 0.811208 | 7.852228e-51 | -8.615850e-47 |
| Msa0922770 | Msa0930330 | 0.804955 | 1.684502e-49 | -8.615850e-47 |
| Msa0922770 | Msa0955260 | 0.810543 | 1.094104e-50 | -8.615850e-47 |
| Msa0922770 | Msa0992590 | 0.817003 | 4.129834e-52 | -8.615850e-47 |
| Msa0922770 | Msa1011760 | 0.806341 | 8.621482e-50 | -8.615850e-47 |
| Msa0922770 | Msa1028460 | 0.816424 | 5.569264e-52 | -8.615850e-47 |
| Msa0922770 | Msa1166180 | 0.800516 | 1.389385e-48 | -8.615850e-47 |
| Msa0922770 | Msa1171340 | 0.802938 | 4.424534e-49 | -8.615850e-47 |
| Msa0922770 | Msa1200920 | 0.806897 | 6.581586e-50 | -8.615850e-47 |
| Msa0922770 | Msa1237030 | 0.810036 | 1.407398e-50 | -8.615850e-47 |
| Msa0922770 | Msa1246530 | -0.800264 | 1.564034e-48 | -8.615850e-47 |
| Msa0922770 | Msa1263660 | 0.816167 | 6.358247e-52 | -8.615850e-47 |
| Msa0922770 | Msa1323060 | 0.821370 | 4.185705e-53 | -8.615850e-47 |
| Msa0922770 | Msa1367940 | 0.800018 | 1.754522e-48 | -8.615850e-47 |
| Msa0922770 | Msa1375630 | 0.803530 | 3.335885e-49 | -8.615850e-47 |
| Msa0922770 | Msa1376530 | 0.831726 | 1.417660e-55 | -8.615850e-47 |
| Msa0922770 | Msa1376640 | 0.807521 | 4.852857e-50 | -8.615850e-47 |
| Msa0922770 | Msa1414970 | 0.815782 | 7.750640e-52 | -8.615850e-47 |
| Msa0922770 | Msa1456650 | 0.807007 | 6.235740e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922770 | MtrunA17_Chr6g0481071 | 94.022 | 184 | 8 | 2 | 1 | 182 | 1 | 183 | 5.05e-106 | 301 |
| Msa0922770 | MtrunA17_Chr4g0042161 | 55.556 | 81 | 36 | 0 | 93 | 173 | 50 | 130 | 3.36e-26 | 97.4 |
| Msa0922770 | MtrunA17_Chr7g0263001 | 54.321 | 81 | 37 | 0 | 93 | 173 | 34 | 114 | 1.49e-24 | 93.2 |
| Msa0922770 | MtrunA17_Chr4g0042151 | 48.718 | 78 | 40 | 0 | 96 | 173 | 46 | 123 | 4.73e-24 | 93.2 |
| Msa0922770 | MtrunA17_Chr1g0198431 | 44.211 | 95 | 51 | 1 | 77 | 171 | 177 | 269 | 5.18e-24 | 95.5 |
| Msa0922770 | MtrunA17_Chr7g0266751 | 41.975 | 81 | 47 | 0 | 95 | 175 | 33 | 113 | 4.41e-22 | 87.0 |
| Msa0922770 | MtrunA17_Chr2g0327921 | 45.122 | 82 | 45 | 0 | 93 | 174 | 6 | 87 | 3.16e-21 | 83.2 |
| Msa0922770 | MtrunA17_Chr3g0088511 | 39.130 | 92 | 53 | 1 | 93 | 181 | 31 | 122 | 2.31e-20 | 82.4 |
| Msa0922770 | MtrunA17_Chr2g0278661 | 38.372 | 86 | 53 | 0 | 89 | 174 | 2 | 87 | 4.80e-17 | 76.3 |
| Msa0922770 | MtrunA17_Chr3g0086861 | 41.250 | 80 | 47 | 0 | 94 | 173 | 44 | 123 | 5.81e-17 | 77.8 |
| Msa0922770 | MtrunA17_Chr7g0219021 | 39.024 | 82 | 50 | 0 | 93 | 174 | 39 | 120 | 6.11e-17 | 75.9 |
| Msa0922770 | MtrunA17_Chr4g0050781 | 39.286 | 84 | 51 | 0 | 89 | 172 | 2 | 85 | 2.11e-16 | 73.9 |
| Msa0922770 | MtrunA17_Chr4g0061451 | 32.500 | 120 | 79 | 1 | 56 | 173 | 2 | 121 | 5.01e-16 | 73.6 |
| Msa0922770 | MtrunA17_Chr4g0035051 | 38.961 | 77 | 47 | 0 | 95 | 171 | 9 | 85 | 6.82e-16 | 70.1 |
| Msa0922770 | MtrunA17_Chr4g0065741 | 37.805 | 82 | 51 | 0 | 93 | 174 | 70 | 151 | 1.90e-15 | 70.1 |
| Msa0922770 | MtrunA17_Chr3g0119311 | 41.463 | 82 | 46 | 1 | 95 | 174 | 37 | 118 | 5.74e-15 | 68.2 |
| Msa0922770 | MtrunA17_Chr4g0035001 | 40.260 | 77 | 46 | 0 | 95 | 171 | 7 | 83 | 1.34e-14 | 67.8 |
| Msa0922770 | MtrunA17_Chr3g0121631 | 37.037 | 81 | 50 | 1 | 93 | 173 | 35 | 114 | 2.01e-14 | 67.0 |
| Msa0922770 | MtrunA17_Chr4g0031091 | 34.615 | 78 | 51 | 0 | 93 | 170 | 32 | 109 | 3.92e-14 | 65.5 |
| Msa0922770 | MtrunA17_Chr4g0035031 | 37.662 | 77 | 48 | 0 | 95 | 171 | 9 | 85 | 4.37e-13 | 64.3 |
| Msa0922770 | MtrunA17_Chr4g0050441 | 39.474 | 76 | 46 | 0 | 96 | 171 | 18 | 93 | 5.25e-13 | 65.5 |
| Msa0922770 | MtrunA17_Chr5g0429941 | 39.474 | 76 | 46 | 0 | 96 | 171 | 18 | 93 | 9.66e-13 | 64.7 |
| Msa0922770 | MtrunA17_Chr7g0219031 | 33.824 | 68 | 45 | 0 | 93 | 160 | 39 | 106 | 4.22e-12 | 60.1 |
| Msa0922770 | MtrunA17_Chr1g0210241 | 32.941 | 85 | 57 | 0 | 89 | 173 | 2 | 86 | 5.97e-12 | 62.4 |
| Msa0922770 | MtrunA17_Chr2g0290191 | 35.714 | 84 | 49 | 2 | 92 | 173 | 104 | 184 | 1.52e-11 | 62.0 |
| Msa0922770 | MtrunA17_Chr6g0472291 | 37.931 | 87 | 51 | 1 | 95 | 178 | 14 | 100 | 2.60e-11 | 58.9 |
| Msa0922770 | MtrunA17_Chr7g0267571 | 35.417 | 96 | 59 | 1 | 79 | 171 | 94 | 189 | 3.65e-11 | 60.5 |
| Msa0922770 | MtrunA17_Chr2g0312111 | 40.000 | 70 | 42 | 0 | 96 | 165 | 102 | 171 | 4.56e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922770 | AT1G73530.1 | 75.904 | 83 | 20 | 0 | 94 | 176 | 77 | 159 | 1.18e-42 | 141 |
| Msa0922770 | AT5G54580.1 | 48.598 | 107 | 54 | 1 | 70 | 175 | 31 | 137 | 6.61e-29 | 105 |
| Msa0922770 | AT3G20930.1 | 42.574 | 101 | 57 | 1 | 82 | 182 | 270 | 369 | 4.65e-23 | 94.7 |
| Msa0922770 | AT3G46020.1 | 45.882 | 85 | 46 | 0 | 93 | 177 | 6 | 90 | 2.26e-22 | 87.0 |
| Msa0922770 | AT5G06210.1 | 38.614 | 101 | 62 | 0 | 76 | 176 | 16 | 116 | 3.89e-21 | 85.1 |
| Msa0922770 | AT2G37510.1 | 52.632 | 76 | 36 | 0 | 93 | 168 | 33 | 108 | 5.22e-21 | 84.3 |
| Msa0922770 | AT2G27330.1 | 40.964 | 83 | 49 | 0 | 89 | 171 | 16 | 98 | 6.54e-21 | 83.6 |
| Msa0922770 | AT3G20930.2 | 40.566 | 106 | 57 | 2 | 82 | 182 | 270 | 374 | 9.24e-21 | 88.2 |
| Msa0922770 | AT4G13850.4 | 43.210 | 81 | 46 | 0 | 93 | 173 | 34 | 114 | 3.29e-17 | 74.3 |
| Msa0922770 | AT4G39260.3 | 41.250 | 80 | 47 | 0 | 95 | 174 | 7 | 86 | 3.57e-17 | 73.2 |
| Msa0922770 | AT4G13850.3 | 43.210 | 81 | 46 | 0 | 93 | 173 | 34 | 114 | 4.76e-17 | 74.3 |
| Msa0922770 | AT4G13850.2 | 43.210 | 81 | 46 | 0 | 93 | 173 | 34 | 114 | 5.85e-17 | 74.3 |
| Msa0922770 | AT4G13850.1 | 43.210 | 81 | 46 | 0 | 93 | 173 | 34 | 114 | 6.54e-17 | 74.3 |
| Msa0922770 | AT3G23830.2 | 40.244 | 82 | 49 | 0 | 93 | 174 | 34 | 115 | 1.05e-16 | 73.2 |
| Msa0922770 | AT3G23830.1 | 40.244 | 82 | 49 | 0 | 93 | 174 | 34 | 115 | 1.05e-16 | 73.2 |
| Msa0922770 | AT4G39260.2 | 41.558 | 77 | 45 | 0 | 95 | 171 | 7 | 83 | 6.59e-16 | 70.9 |
| Msa0922770 | AT4G13860.1 | 41.558 | 77 | 45 | 0 | 93 | 169 | 2 | 78 | 7.40e-16 | 69.7 |
| Msa0922770 | AT2G37510.2 | 40.594 | 101 | 35 | 1 | 93 | 168 | 33 | 133 | 9.25e-16 | 71.6 |
| Msa0922770 | AT2G21660.2 | 38.095 | 84 | 52 | 0 | 88 | 171 | 2 | 85 | 1.40e-15 | 70.9 |
| Msa0922770 | AT4G39260.1 | 41.558 | 77 | 45 | 0 | 95 | 171 | 7 | 83 | 1.72e-15 | 70.9 |
| Msa0922770 | AT3G26420.1 | 39.744 | 78 | 47 | 0 | 95 | 172 | 8 | 85 | 1.88e-15 | 72.0 |
| Msa0922770 | AT2G21660.1 | 38.095 | 84 | 52 | 0 | 88 | 171 | 2 | 85 | 1.98e-15 | 70.9 |
| Msa0922770 | AT5G59860.1 | 43.836 | 73 | 36 | 1 | 99 | 171 | 76 | 143 | 2.29e-15 | 70.1 |
| Msa0922770 | AT5G61030.2 | 35.366 | 82 | 53 | 0 | 93 | 174 | 39 | 120 | 3.33e-15 | 72.4 |
| Msa0922770 | AT5G61030.1 | 35.366 | 82 | 53 | 0 | 93 | 174 | 39 | 120 | 3.33e-15 | 72.4 |
| Msa0922770 | AT4G20030.1 | 32.500 | 80 | 54 | 0 | 93 | 172 | 39 | 118 | 1.56e-14 | 67.8 |
| Msa0922770 | AT5G64200.2 | 42.105 | 76 | 44 | 0 | 96 | 171 | 18 | 93 | 4.24e-14 | 69.3 |
| Msa0922770 | AT5G64200.1 | 42.105 | 76 | 44 | 0 | 96 | 171 | 18 | 93 | 4.24e-14 | 69.3 |
| Msa0922770 | AT5G19030.1 | 30.579 | 121 | 78 | 1 | 59 | 179 | 48 | 162 | 4.29e-14 | 67.0 |
| Msa0922770 | AT1G18630.1 | 39.744 | 78 | 47 | 0 | 94 | 171 | 36 | 113 | 1.80e-13 | 65.1 |
| Msa0922770 | AT5G59865.1 | 33.708 | 89 | 59 | 0 | 93 | 181 | 25 | 113 | 3.71e-13 | 63.2 |
| Msa0922770 | AT5G47320.1 | 39.286 | 84 | 51 | 0 | 93 | 176 | 30 | 113 | 8.68e-13 | 64.3 |
| Msa0922770 | AT1G74230.1 | 38.462 | 78 | 47 | 1 | 93 | 170 | 33 | 109 | 1.15e-12 | 65.1 |
| Msa0922770 | AT3G08000.1 | 36.709 | 79 | 50 | 0 | 95 | 173 | 42 | 120 | 1.33e-12 | 62.4 |
| Msa0922770 | AT1G07350.3 | 37.647 | 85 | 53 | 0 | 84 | 168 | 35 | 119 | 1.56e-12 | 62.0 |
| Msa0922770 | AT1G07350.2 | 37.647 | 85 | 53 | 0 | 84 | 168 | 35 | 119 | 1.56e-12 | 62.0 |
| Msa0922770 | AT1G58470.2 | 38.750 | 80 | 49 | 0 | 85 | 164 | 111 | 190 | 1.92e-12 | 64.7 |
| Msa0922770 | AT1G58470.1 | 38.750 | 80 | 49 | 0 | 85 | 164 | 111 | 190 | 1.92e-12 | 64.7 |
| Msa0922770 | AT1G07350.5 | 37.647 | 85 | 53 | 0 | 84 | 168 | 65 | 149 | 3.48e-12 | 61.6 |
| Msa0922770 | AT1G07350.6 | 37.500 | 88 | 55 | 0 | 84 | 171 | 35 | 122 | 4.96e-12 | 62.4 |
| Msa0922770 | AT1G07350.4 | 37.500 | 88 | 55 | 0 | 84 | 171 | 65 | 152 | 7.38e-12 | 62.4 |
| Msa0922770 | AT2G43370.2 | 36.047 | 86 | 55 | 0 | 83 | 168 | 53 | 138 | 1.36e-11 | 61.2 |
| Msa0922770 | AT4G36960.1 | 32.955 | 88 | 57 | 1 | 95 | 182 | 4 | 89 | 2.09e-11 | 62.0 |
| Msa0922770 | AT4G36960.2 | 32.955 | 88 | 57 | 1 | 95 | 182 | 4 | 89 | 2.09e-11 | 62.0 |
| Msa0922770 | AT1G07350.1 | 40.000 | 75 | 45 | 0 | 96 | 170 | 77 | 151 | 3.06e-11 | 61.6 |
| Msa0922770 | AT1G60650.2 | 33.750 | 80 | 53 | 0 | 94 | 173 | 12 | 91 | 3.72e-11 | 60.8 |
| Msa0922770 | AT1G60650.1 | 33.750 | 80 | 53 | 0 | 94 | 173 | 12 | 91 | 3.72e-11 | 60.8 |
| Msa0922770 | AT5G08695.1 | 40.000 | 80 | 48 | 0 | 95 | 174 | 228 | 307 | 3.76e-11 | 61.2 |
| Msa0922770 | AT2G43370.1 | 39.726 | 73 | 44 | 0 | 96 | 168 | 66 | 138 | 4.29e-11 | 60.8 |
| Msa0922770 | AT2G37220.1 | 34.524 | 84 | 55 | 0 | 95 | 178 | 205 | 288 | 7.19e-11 | 60.1 |
| Msa0922770 | AT3G47120.2 | 36.364 | 88 | 56 | 0 | 81 | 168 | 23 | 110 | 8.13e-11 | 60.1 |
| Msa0922770 | AT1G60000.1 | 36.709 | 79 | 50 | 0 | 95 | 173 | 178 | 256 | 9.90e-11 | 59.3 |
Find 58 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCTATGGCTAACATTAT+TGG | 0.205676 | 6_2:-62237795 | Msa0922770:CDS |
| CGAAATGCATTTAAGAATTT+CGG | 0.236689 | 6_2:-62235554 | Msa0922770:CDS |
| CATTATACTTTGACACTATC+TGG | 0.258372 | 6_2:-62234813 | Msa0922770:three_prime_UTR |
| CTCTGTCTTAGCTCTGATCT+TGG | 0.314316 | 6_2:+62234945 | None:intergenic |
| ATGTTAGCCATAGCAATAAC+AGG | 0.346916 | 6_2:+62237801 | None:intergenic |
| TGATCCTTTCTGCATATTGC+AGG | 0.360037 | 6_2:+62234859 | None:intergenic |
| TTCACCAGTCTTTGCATTGT+AGG | 0.382542 | 6_2:-62234758 | Msa0922770:three_prime_UTR |
| GAAAGTGATTGAATTTGTTA+AGG | 0.387977 | 6_2:+62237743 | None:intergenic |
| AACGAGGTTGTTGTGTTGTT+GGG | 0.393371 | 6_2:+62237663 | None:intergenic |
| GGTTGTTGTGTTGTTGGGTT+GGG | 0.416370 | 6_2:+62237668 | None:intergenic |
| AGAAAGGATCACAGTAGAAT+TGG | 0.418670 | 6_2:-62234847 | Msa0922770:three_prime_UTR |
| TCACCAGTCTTTGCATTGTA+GGG | 0.423643 | 6_2:-62234757 | Msa0922770:three_prime_UTR |
| AACTACATTGTGCTATTGCT+TGG | 0.427908 | 6_2:+62234920 | None:intergenic |
| AGCCTTCTTCGATTCCTCTT+CGG | 0.440323 | 6_2:+62235296 | None:intergenic |
| TTTGTAGTCTCATATGTCAA+TGG | 0.442044 | 6_2:-62234675 | Msa0922770:three_prime_UTR |
| GGTACATTATATGTTCATCT+TGG | 0.448486 | 6_2:-62234882 | Msa0922770:three_prime_UTR |
| AAAGTGATTGAATTTGTTAA+GGG | 0.448488 | 6_2:+62237744 | None:intergenic |
| AAACGAGGTTGTTGTGTTGT+TGG | 0.467992 | 6_2:+62237662 | None:intergenic |
| TGAACCATGAACAGTCAATC+TGG | 0.469729 | 6_2:-62235373 | Msa0922770:intron |
| CAATGTTCATTGTTCTGTGT+TGG | 0.470010 | 6_2:-62237610 | Msa0922770:CDS |
| CGAAGAAAAGCAAACCCTCT+TGG | 0.476438 | 6_2:+62235327 | None:intergenic |
| ACATTGTCACCAAGTACATT+AGG | 0.478499 | 6_2:+62234702 | None:intergenic |
| TAACCAGAAAACTGAATGAA+TGG | 0.479444 | 6_2:+62237846 | None:intergenic |
| CCATGTTTCACTGCTTAAAG+TGG | 0.482438 | 6_2:+62234788 | None:intergenic |
| CTTCTAATTCTCGTTCAACT+AGG | 0.484383 | 6_2:-62237548 | Msa0922770:CDS |
| GGTTACCCCTGTTATTGCTA+TGG | 0.490387 | 6_2:-62237808 | Msa0922770:CDS |
| AGGTTGTTGTGTTGTTGGGT+TGG | 0.492910 | 6_2:+62237667 | None:intergenic |
| GAAGATGAGGATTCAGAAGC+AGG | 0.501944 | 6_2:+62237576 | None:intergenic |
| GATTGCAGTAGAAGAGAAGA+AGG | 0.508073 | 6_2:+62237768 | None:intergenic |
| TCAACTAGGCTGTATGTTAG+TGG | 0.508905 | 6_2:-62237534 | Msa0922770:intron |
| TCATCCTTGCCTAATGTACT+TGG | 0.511558 | 6_2:-62234711 | Msa0922770:three_prime_UTR |
| TAAGAATTTCGGTCAACTTG+TGG | 0.514390 | 6_2:-62235543 | Msa0922770:CDS |
| ATTAGAAGATGAAGAAGATG+AGG | 0.530320 | 6_2:+62237563 | None:intergenic |
| GAATCGAAGAAGGCTATTGA+AGG | 0.540785 | 6_2:-62235288 | Msa0922770:CDS |
| TACATTAGGCAAGGATGACA+TGG | 0.544099 | 6_2:+62234716 | None:intergenic |
| GGATGGTAGAGTCATATTTG+TGG | 0.548348 | 6_2:-62234979 | Msa0922770:CDS |
| AAGGCTATTGAAGGAATGCA+TGG | 0.551790 | 6_2:-62235279 | Msa0922770:CDS |
| CAAATATGACTCTACCATCC+AGG | 0.555287 | 6_2:+62234982 | None:intergenic |
| GTAGTTATATTAAAGTTCCA+TGG | 0.563172 | 6_2:-62234903 | Msa0922770:three_prime_UTR |
| AACCGAAGAGGAATCGAAGA+AGG | 0.564722 | 6_2:-62235298 | Msa0922770:CDS |
| CCACTTTAAGCAGTGAAACA+TGG | 0.569970 | 6_2:-62234788 | Msa0922770:three_prime_UTR |
| ATGAACAGTCAATCTGGTGA+TGG | 0.584373 | 6_2:-62235367 | Msa0922770:intron |
| TTGGCCTGCAATATGCAGAA+AGG | 0.592870 | 6_2:-62234863 | Msa0922770:three_prime_UTR |
| AATTTCGGTCAACTTGTGGA+TGG | 0.604326 | 6_2:-62235539 | Msa0922770:intron |
| TTATCAGTAGCAATCAAACT+CGG | 0.605155 | 6_2:-62234631 | Msa0922770:three_prime_UTR |
| GTCACCAAGTACATTAGGCA+AGG | 0.608930 | 6_2:+62234707 | None:intergenic |
| TCTTCGTTATGAAACCGAAG+AGG | 0.619057 | 6_2:-62235310 | Msa0922770:CDS |
| ATGCCCTACAATGCAAAGAC+TGG | 0.622147 | 6_2:+62234754 | None:intergenic |
| TATTGAAGGAATGCATGGAA+AGG | 0.629224 | 6_2:-62235274 | Msa0922770:intron |
| AGGGCTATCATTTCGTACAA+CGG | 0.631756 | 6_2:-62235588 | Msa0922770:CDS |
| GATGAACATATAATGTACCA+TGG | 0.635648 | 6_2:+62234886 | None:intergenic |
| TGTTAGCCATAGCAATAACA+GGG | 0.640317 | 6_2:+62237802 | None:intergenic |
| GTTTCTAAGTGATGATGACA+AGG | 0.643470 | 6_2:+62237632 | None:intergenic |
| AAAGTTGCGAATAGACCAAG+AGG | 0.678558 | 6_2:-62235342 | Msa0922770:CDS |
| GATGAGGATTCAGAAGCAGG+AGG | 0.684475 | 6_2:+62237579 | None:intergenic |
| TGACAAGGAAGATGAAAACG+AGG | 0.702921 | 6_2:+62237647 | None:intergenic |
| GTTAGCCATAGCAATAACAG+GGG | 0.734349 | 6_2:+62237803 | None:intergenic |
| AAGTTGCGAATAGACCAAGA+GGG | 0.753201 | 6_2:-62235341 | Msa0922770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGTTTTTTTGTTTTAT+GGG | - | chr6_2:62235051-62235070 | Msa0922770:intron | 10.0% |
| !!! | ATTATTATTAGTTGTATTTT+TGG | - | chr6_2:62235468-62235487 | Msa0922770:intron | 10.0% |
| !!! | TGATTACAATTTAAATTTTA+AGG | - | chr6_2:62236999-62237018 | Msa0922770:intron | 10.0% |
| !!! | GAGATAAAATTTATGTTTTT+GGG | + | chr6_2:62234775-62234794 | None:intergenic | 15.0% |
| !!! | TGAGATAAAATTTATGTTTT+TGG | + | chr6_2:62234776-62234795 | None:intergenic | 15.0% |
| !! | TAAATGAGAAAAAACATAAA+AGG | + | chr6_2:62234991-62235010 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTTTGTTTTA+TGG | - | chr6_2:62235050-62235069 | Msa0922770:intron | 15.0% |
| !! | ATAACCTAAAATAAACTTAA+GGG | + | chr6_2:62235631-62235650 | None:intergenic | 15.0% |
| !! | TATAACCTAAAATAAACTTA+AGG | + | chr6_2:62235632-62235651 | None:intergenic | 15.0% |
| !! | AGAATTAATTCATAATTTGA+CGG | + | chr6_2:62235696-62235715 | None:intergenic | 15.0% |
| !!! | ATTATAGTGAATTTGATTTT+TGG | - | chr6_2:62236296-62236315 | Msa0922770:intron | 15.0% |
| !!! | TGTTATATTTGATTGATTTT+TGG | - | chr6_2:62236350-62236369 | Msa0922770:intron | 15.0% |
| !! | AAAACAAACAATTTCATAAA+AGG | - | chr6_2:62236452-62236471 | Msa0922770:intron | 15.0% |
| !!! | AAAGTGATTGAATTTGTTAA+GGG | + | chr6_2:62234729-62234748 | None:intergenic | 20.0% |
| !! | AAAACATAAAAGGTTGAAAA+GGG | + | chr6_2:62234981-62235000 | None:intergenic | 20.0% |
| !! | AAAAACATAAAAGGTTGAAA+AGG | + | chr6_2:62234982-62235001 | None:intergenic | 20.0% |
| !!! | AGAGTGTATATTTTTTTTCA+TGG | - | chr6_2:62235151-62235170 | Msa0922770:intron | 20.0% |
| !!! | ATATTTTTTTTCATGGTTTC+TGG | - | chr6_2:62235158-62235177 | Msa0922770:intron | 20.0% |
| !!! | TATTAGTTGTATTTTTGGAT+TGG | - | chr6_2:62235473-62235492 | Msa0922770:intron | 20.0% |
| !!! | ATTAGTTGTATTTTTGGATT+GGG | - | chr6_2:62235474-62235493 | Msa0922770:intron | 20.0% |
| !!! | GTTTATTTTAGGTTATAAGT+TGG | - | chr6_2:62235635-62235654 | Msa0922770:intron | 20.0% |
| !! | CATATATGCATAGAATAAAA+TGG | + | chr6_2:62235908-62235927 | None:intergenic | 20.0% |
| !! | TTATTCTATGCATATATGTT+TGG | - | chr6_2:62235910-62235929 | Msa0922770:intron | 20.0% |
| !! | AACTCTTTCAATGAAAAAAA+TGG | + | chr6_2:62236115-62236134 | None:intergenic | 20.0% |
| !!! | GATTCTAGAAAGATATAAAA+TGG | + | chr6_2:62236581-62236600 | None:intergenic | 20.0% |
| !! | TACAAAATATTGTCAAATAG+TGG | - | chr6_2:62236726-62236745 | Msa0922770:intron | 20.0% |
| !! | ACAAAATATTGTCAAATAGT+GGG | - | chr6_2:62236727-62236746 | Msa0922770:intron | 20.0% |
| ! | TGGTTAGTGTAGAAAAAAAA+TGG | - | chr6_2:62234641-62234660 | Msa0922770:three_prime_UTR | 25.0% |
| !!! | GAAAGTGATTGAATTTGTTA+AGG | + | chr6_2:62234730-62234749 | None:intergenic | 25.0% |
| ! | TCTACTTCATGATACAAAAA+TGG | - | chr6_2:62235116-62235135 | Msa0922770:intron | 25.0% |
| ! | CTACTTCATGATACAAAAAT+GGG | - | chr6_2:62235117-62235136 | Msa0922770:intron | 25.0% |
| ! | ATTCTGTGTAATTTATGTGT+CGG | - | chr6_2:62235286-62235305 | Msa0922770:CDS | 25.0% |
| ! | ACCAGTTATATTTCAAAGAA+TGG | - | chr6_2:62235535-62235554 | Msa0922770:intron | 25.0% |
| !!! | TCCATTCTTTGAAATATAAC+TGG | + | chr6_2:62235539-62235558 | None:intergenic | 25.0% |
| ! | TAATTCATAATTTGACGGAA+AGG | + | chr6_2:62235691-62235710 | None:intergenic | 25.0% |
| !! | ACAATAAGTTGTCTTTTAGT+CGG | + | chr6_2:62235799-62235818 | None:intergenic | 25.0% |
| ! | ATTGATCGTATATAGTTGAA+CGG | + | chr6_2:62236050-62236069 | None:intergenic | 25.0% |
| !!! | TTGATTTTTGGACATAATTC+AGG | - | chr6_2:62236308-62236327 | Msa0922770:intron | 25.0% |
| !! | TTTCAACTGTTAACCTTTTT+AGG | - | chr6_2:62236373-62236392 | Msa0922770:intron | 25.0% |
| ! | TTACATGATTCAAAATGGAA+AGG | + | chr6_2:62236492-62236511 | None:intergenic | 25.0% |
| ! | AATGCTTACATGATTCAAAA+TGG | + | chr6_2:62236497-62236516 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAGCATATTG+CGG | + | chr6_2:62236711-62236730 | None:intergenic | 25.0% |
| !! | TACTGGTATATGCATATTTT+TGG | - | chr6_2:62236823-62236842 | Msa0922770:intron | 25.0% |
| !!! | TGCTATTTCATGTTTCATTA+AGG | - | chr6_2:62236862-62236881 | Msa0922770:intron | 25.0% |
| !! | GCTATTTCATGTTTCATTAA+GGG | - | chr6_2:62236863-62236882 | Msa0922770:intron | 25.0% |
| ! | CGAAATGCATTTAAGAATTT+CGG | - | chr6_2:62236916-62236935 | Msa0922770:intron | 25.0% |
| ! | GCTTAAATAGCTTAAAAACT+TGG | + | chr6_2:62237434-62237453 | None:intergenic | 25.0% |
| ! | GTAGTTATATTAAAGTTCCA+TGG | - | chr6_2:62237567-62237586 | Msa0922770:CDS | 25.0% |
| ! | ATACCATTCATTCAGTTTTC+TGG | - | chr6_2:62234621-62234640 | Msa0922770:three_prime_UTR | 30.0% |
| TAACCAGAAAACTGAATGAA+TGG | + | chr6_2:62234627-62234646 | None:intergenic | 30.0% | |
| ATTGCTATGGCTAACATTAT+TGG | - | chr6_2:62234675-62234694 | Msa0922770:three_prime_UTR | 30.0% | |
| ATTAGAAGATGAAGAAGATG+AGG | + | chr6_2:62234910-62234929 | None:intergenic | 30.0% | |
| CAATGTTGATATTGTTAGGT+TGG | + | chr6_2:62235411-62235430 | None:intergenic | 30.0% | |
| TGAATCATATACACGTACAT+TGG | - | chr6_2:62235568-62235587 | Msa0922770:CDS | 30.0% | |
| !! | TGGTCCCTTAAGTTTATTTT+AGG | - | chr6_2:62235624-62235643 | Msa0922770:intron | 30.0% |
| !! | CACATTCTAATAGCTTTGAA+AGG | + | chr6_2:62235740-62235759 | None:intergenic | 30.0% |
| TTGTAATGTTAGCATCCTTA+AGG | - | chr6_2:62235815-62235834 | Msa0922770:intron | 30.0% | |
| TGTAATGTTAGCATCCTTAA+GGG | - | chr6_2:62235816-62235835 | Msa0922770:intron | 30.0% | |
| ACGTTTAAAAAGTCTCAAGT+TGG | + | chr6_2:62235843-62235862 | None:intergenic | 30.0% | |
| ! | ACTTGAGACTTTTTAAACGT+AGG | - | chr6_2:62235843-62235862 | Msa0922770:intron | 30.0% |
| ! | CTTGAGACTTTTTAAACGTA+GGG | - | chr6_2:62235844-62235863 | Msa0922770:intron | 30.0% |
| GAAACCATTAGAATTATCTC+TGG | - | chr6_2:62236164-62236183 | Msa0922770:intron | 30.0% | |
| ! | TGAAAGCAAGTATTTTGTCT+TGG | - | chr6_2:62236273-62236292 | Msa0922770:intron | 30.0% |
| AATAGAGTAGACACCTAAAA+AGG | + | chr6_2:62236389-62236408 | None:intergenic | 30.0% | |
| ! | TCTAGAATCAGATCTTGTTT+CGG | - | chr6_2:62236592-62236611 | Msa0922770:intron | 30.0% |
| AATTTATTCAAATTCCGCTG+TGG | + | chr6_2:62236679-62236698 | None:intergenic | 30.0% | |
| !! | AATATTGTCAAATAGTGGGT+TGG | - | chr6_2:62236731-62236750 | Msa0922770:intron | 30.0% |
| ! | GCTTACTTTAGAAATGAAAG+CGG | + | chr6_2:62237071-62237090 | None:intergenic | 30.0% |
| GATGAACATATAATGTACCA+TGG | + | chr6_2:62237587-62237606 | None:intergenic | 30.0% | |
| GGTACATTATATGTTCATCT+TGG | - | chr6_2:62237588-62237607 | Msa0922770:CDS | 30.0% | |
| CATTATACTTTGACACTATC+TGG | - | chr6_2:62237657-62237676 | Msa0922770:CDS | 30.0% | |
| TTTGTAGTCTCATATGTCAA+TGG | - | chr6_2:62237795-62237814 | Msa0922770:CDS | 30.0% | |
| TTATCAGTAGCAATCAAACT+CGG | - | chr6_2:62237839-62237858 | Msa0922770:five_prime_UTR | 30.0% | |
| TGTTAGCCATAGCAATAACA+GGG | + | chr6_2:62234671-62234690 | None:intergenic | 35.0% | |
| ATGTTAGCCATAGCAATAAC+AGG | + | chr6_2:62234672-62234691 | None:intergenic | 35.0% | |
| ! | GTTTCTAAGTGATGATGACA+AGG | + | chr6_2:62234841-62234860 | None:intergenic | 35.0% |
| CAATGTTCATTGTTCTGTGT+TGG | - | chr6_2:62234860-62234879 | Msa0922770:three_prime_UTR | 35.0% | |
| CTTCTAATTCTCGTTCAACT+AGG | - | chr6_2:62234922-62234941 | Msa0922770:exon | 35.0% | |
| ! | TGTAATTTATGTGTCGGTGT+TGG | - | chr6_2:62235292-62235311 | Msa0922770:CDS | 35.0% |
| CTGGCAATGTTGATATTGTT+AGG | + | chr6_2:62235415-62235434 | None:intergenic | 35.0% | |
| !!! | AGTTGTATTTTTGGATTGGG+TGG | - | chr6_2:62235477-62235496 | Msa0922770:intron | 35.0% |
| !! | ATTTTTGGATTGGGTGGTAT+AGG | - | chr6_2:62235483-62235502 | Msa0922770:intron | 35.0% |
| !! | TTTTTGGATTGGGTGGTATA+GGG | - | chr6_2:62235484-62235503 | Msa0922770:intron | 35.0% |
| !! | TTTCTTCTAAAACGTCCACA+TGG | + | chr6_2:62235775-62235794 | None:intergenic | 35.0% |
| ! | AGTGGTTTTTCACGTTTACA+TGG | + | chr6_2:62235980-62235999 | None:intergenic | 35.0% |
| TACGATCAATCCAAACATAC+CGG | - | chr6_2:62236060-62236079 | Msa0922770:intron | 35.0% | |
| ACCATTAGAATTATCTCTGG+TGG | - | chr6_2:62236167-62236186 | Msa0922770:intron | 35.0% | |
| AAAGGAAATTGACTGTGTGA+TGG | - | chr6_2:62236229-62236248 | Msa0922770:intron | 35.0% | |
| CACTTGTGATATGCAAATCA+AGG | + | chr6_2:62236255-62236274 | None:intergenic | 35.0% | |
| CAATCTACGATTGACAATAC+TGG | - | chr6_2:62236806-62236825 | Msa0922770:intron | 35.0% | |
| TAAGAATTTCGGTCAACTTG+TGG | - | chr6_2:62236927-62236946 | Msa0922770:intron | 35.0% | |
| TATTGAAGGAATGCATGGAA+AGG | - | chr6_2:62237196-62237215 | Msa0922770:intron | 35.0% | |
| ! | AACTACATTGTGCTATTGCT+TGG | + | chr6_2:62237553-62237572 | None:intergenic | 35.0% |
| AGAAAGGATCACAGTAGAAT+TGG | - | chr6_2:62237623-62237642 | Msa0922770:CDS | 35.0% | |
| ACATTGTCACCAAGTACATT+AGG | + | chr6_2:62237771-62237790 | None:intergenic | 35.0% | |
| GTTAGCCATAGCAATAACAG+GGG | + | chr6_2:62234670-62234689 | None:intergenic | 40.0% | |
| GATTGCAGTAGAAGAGAAGA+AGG | + | chr6_2:62234705-62234724 | None:intergenic | 40.0% | |
| ! | AACGAGGTTGTTGTGTTGTT+GGG | + | chr6_2:62234810-62234829 | None:intergenic | 40.0% |
| AAACGAGGTTGTTGTGTTGT+TGG | + | chr6_2:62234811-62234830 | None:intergenic | 40.0% | |
| TGACAAGGAAGATGAAAACG+AGG | + | chr6_2:62234826-62234845 | None:intergenic | 40.0% | |
| TCAACTAGGCTGTATGTTAG+TGG | - | chr6_2:62234936-62234955 | Msa0922770:CDS | 40.0% | |
| !! | ATGGGTCTTGTTCCAATTGT+TGG | - | chr6_2:62235069-62235088 | Msa0922770:intron | 40.0% |
| !! | TGGGTCTTGTTCCAATTGTT+GGG | - | chr6_2:62235070-62235089 | Msa0922770:intron | 40.0% |
| GATCAAAACCACCCAACAAT+TGG | + | chr6_2:62235084-62235103 | None:intergenic | 40.0% | |
| ! | TTCATGGTTTCTGGATGAAG+TGG | - | chr6_2:62235167-62235186 | Msa0922770:intron | 40.0% |
| AACTCACACACACAATTGAG+AGG | - | chr6_2:62235197-62235216 | Msa0922770:intron | 40.0% | |
| ! | TGAAGCACAAACACTCCTTT+TGG | + | chr6_2:62235353-62235372 | None:intergenic | 40.0% |
| GAGTGTTTGTGCTTCATAGT+AGG | - | chr6_2:62235357-62235376 | Msa0922770:CDS | 40.0% | |
| TTGTGCTTCATAGTAGGTCA+TGG | - | chr6_2:62235363-62235382 | Msa0922770:intron | 40.0% | |
| GGTATAGGGTTGAATGGAAT+TGG | - | chr6_2:62235498-62235517 | Msa0922770:intron | 40.0% | |
| TTGGACATGACAATGACAGA+CGG | - | chr6_2:62235587-62235606 | Msa0922770:CDS | 40.0% | |
| AGACGGTTTACATGCATGTT+TGG | - | chr6_2:62235604-62235623 | Msa0922770:intron | 40.0% | |
| TGCTGACATCAGTAACGTAA+GGG | + | chr6_2:62235662-62235681 | None:intergenic | 40.0% | |
| ATGCTGACATCAGTAACGTA+AGG | + | chr6_2:62235663-62235682 | None:intergenic | 40.0% | |
| ! | TTCTGTCTAAAATGTCCACG+TGG | - | chr6_2:62235712-62235731 | Msa0922770:intron | 40.0% |
| ! | AGGGTACCAACTTGAAATGT+CGG | - | chr6_2:62235863-62235882 | Msa0922770:intron | 40.0% |
| !! | TTGAAATGTCGGTGCTACAT+AGG | - | chr6_2:62235874-62235893 | Msa0922770:intron | 40.0% |
| TTGCTTCTACAAATTCACGC+TGG | + | chr6_2:62235944-62235963 | None:intergenic | 40.0% | |
| TTCACGTTTACATGGAAGCT+TGG | + | chr6_2:62235972-62235991 | None:intergenic | 40.0% | |
| GTAAACGTGAAAAACCACTG+TGG | - | chr6_2:62235981-62236000 | Msa0922770:intron | 40.0% | |
| CGTCTTCATAAAAACCACAG+TGG | + | chr6_2:62235998-62236017 | None:intergenic | 40.0% | |
| GGAGTTGAATAGCCTATGTA+TGG | + | chr6_2:62236029-62236048 | None:intergenic | 40.0% | |
| CAATCCAAACATACCGGATA+AGG | - | chr6_2:62236066-62236085 | Msa0922770:intron | 40.0% | |
| AAGTCCTTATCCGGTATGTT+TGG | + | chr6_2:62236073-62236092 | None:intergenic | 40.0% | |
| CAGTCAAACAAGTCCTTATC+CGG | + | chr6_2:62236082-62236101 | None:intergenic | 40.0% | |
| ! | GGACTTGTTTGACTGTAGAT+TGG | - | chr6_2:62236087-62236106 | Msa0922770:intron | 40.0% |
| GCCACCAGAGATAATTCTAA+TGG | + | chr6_2:62236171-62236190 | None:intergenic | 40.0% | |
| ATTATCTCTGGTGGCTGAAA+TGG | - | chr6_2:62236176-62236195 | Msa0922770:intron | 40.0% | |
| TTCCTTTAATCTGAGCTACC+AGG | + | chr6_2:62236216-62236235 | None:intergenic | 40.0% | |
| ACTACAGTGTTATACCACAG+CGG | - | chr6_2:62236662-62236681 | Msa0922770:intron | 40.0% | |
| !! | ATTGTCAAATAGTGGGTTGG+TGG | - | chr6_2:62236734-62236753 | Msa0922770:intron | 40.0% |
| AGGGCTATCATTTCGTACAA+CGG | - | chr6_2:62236882-62236901 | Msa0922770:intron | 40.0% | |
| AATTTCGGTCAACTTGTGGA+TGG | - | chr6_2:62236931-62236950 | Msa0922770:intron | 40.0% | |
| TGAACCATGAACAGTCAATC+TGG | - | chr6_2:62237097-62237116 | Msa0922770:intron | 40.0% | |
| ATCACCAGATTGACTGTTCA+TGG | + | chr6_2:62237104-62237123 | None:intergenic | 40.0% | |
| ATGAACAGTCAATCTGGTGA+TGG | - | chr6_2:62237103-62237122 | Msa0922770:intron | 40.0% | |
| AAAGTTGCGAATAGACCAAG+AGG | - | chr6_2:62237128-62237147 | Msa0922770:intron | 40.0% | |
| AAGTTGCGAATAGACCAAGA+GGG | - | chr6_2:62237129-62237148 | Msa0922770:intron | 40.0% | |
| TCTTCGTTATGAAACCGAAG+AGG | - | chr6_2:62237160-62237179 | Msa0922770:intron | 40.0% | |
| GAATCGAAGAAGGCTATTGA+AGG | - | chr6_2:62237182-62237201 | Msa0922770:intron | 40.0% | |
| AAGGCTATTGAAGGAATGCA+TGG | - | chr6_2:62237191-62237210 | Msa0922770:intron | 40.0% | |
| TGTGAAAGCTTACAAACGAG+TGG | - | chr6_2:62237239-62237258 | Msa0922770:intron | 40.0% | |
| TTGTAACTCTCAGTGAAGCT+TGG | - | chr6_2:62237344-62237363 | Msa0922770:intron | 40.0% | |
| ! | TGAAACACTTTTGCAGTTCC+TGG | - | chr6_2:62237470-62237489 | Msa0922770:intron | 40.0% |
| CAAATATGACTCTACCATCC+AGG | + | chr6_2:62237491-62237510 | None:intergenic | 40.0% | |
| GGATGGTAGAGTCATATTTG+TGG | - | chr6_2:62237491-62237510 | Msa0922770:intron | 40.0% | |
| TGATCCTTTCTGCATATTGC+AGG | + | chr6_2:62237614-62237633 | None:intergenic | 40.0% | |
| CCATGTTTCACTGCTTAAAG+TGG | + | chr6_2:62237685-62237704 | None:intergenic | 40.0% | |
| CCACTTTAAGCAGTGAAACA+TGG | - | chr6_2:62237682-62237701 | Msa0922770:CDS | 40.0% | |
| TTCACCAGTCTTTGCATTGT+AGG | - | chr6_2:62237712-62237731 | Msa0922770:CDS | 40.0% | |
| TCACCAGTCTTTGCATTGTA+GGG | - | chr6_2:62237713-62237732 | Msa0922770:CDS | 40.0% | |
| TACATTAGGCAAGGATGACA+TGG | + | chr6_2:62237757-62237776 | None:intergenic | 40.0% | |
| TCATCCTTGCCTAATGTACT+TGG | - | chr6_2:62237759-62237778 | Msa0922770:CDS | 40.0% | |
| GGTTACCCCTGTTATTGCTA+TGG | - | chr6_2:62234662-62234681 | Msa0922770:three_prime_UTR | 45.0% | |
| ! | GGTTGTTGTGTTGTTGGGTT+GGG | + | chr6_2:62234805-62234824 | None:intergenic | 45.0% |
| ! | AGGTTGTTGTGTTGTTGGGT+TGG | + | chr6_2:62234806-62234825 | None:intergenic | 45.0% |
| GAAGATGAGGATTCAGAAGC+AGG | + | chr6_2:62234897-62234916 | None:intergenic | 45.0% | |
| ! | GTCTTGTTCCAATTGTTGGG+TGG | - | chr6_2:62235073-62235092 | Msa0922770:intron | 45.0% |
| GAGGTCAATTCTGTGAAGCA+TGG | - | chr6_2:62235216-62235235 | Msa0922770:intron | 45.0% | |
| ATTCTGTGAAGCATGGACAC+CGG | - | chr6_2:62235223-62235242 | Msa0922770:intron | 45.0% | |
| ! | CTTTTGGATTAAGCGTGTCC+CGG | + | chr6_2:62235337-62235356 | None:intergenic | 45.0% |
| TCAACATTGCCAGTTGAGCT+AGG | - | chr6_2:62235422-62235441 | Msa0922770:intron | 45.0% | |
| CAGTTGAGCTAGGAGATTCA+GGG | - | chr6_2:62235432-62235451 | Msa0922770:intron | 45.0% | |
| TAGGAGATTCAGGGACTTGT+TGG | - | chr6_2:62235441-62235460 | Msa0922770:intron | 45.0% | |
| ! | AGGAGATTCAGGGACTTGTT+GGG | - | chr6_2:62235442-62235461 | Msa0922770:intron | 45.0% |
| TTGGGTGGTATAGGGTTGAA+TGG | - | chr6_2:62235492-62235511 | Msa0922770:intron | 45.0% | |
| GTGTGTCTCTATTAGCCATG+TGG | - | chr6_2:62235757-62235776 | Msa0922770:intron | 45.0% | |
| !! | AGTCTCAAGTTGGTCCCTTA+AGG | + | chr6_2:62235833-62235852 | None:intergenic | 45.0% |
| !! | GTAGCACCGACATTTCAAGT+TGG | + | chr6_2:62235872-62235891 | None:intergenic | 45.0% |
| TGCCTGGTAGCTCAGATTAA+AGG | - | chr6_2:62236211-62236230 | Msa0922770:intron | 45.0% | |
| CGAAGAAAAGCAAACCCTCT+TGG | + | chr6_2:62237146-62237165 | None:intergenic | 45.0% | |
| AACCGAAGAGGAATCGAAGA+AGG | - | chr6_2:62237172-62237191 | Msa0922770:intron | 45.0% | |
| AGCCTTCTTCGATTCCTCTT+CGG | + | chr6_2:62237177-62237196 | None:intergenic | 45.0% | |
| ! | ACACTTTTGCAGTTCCTGGA+TGG | - | chr6_2:62237474-62237493 | Msa0922770:intron | 45.0% |
| !! | CTCTGTCTTAGCTCTGATCT+TGG | + | chr6_2:62237528-62237547 | None:intergenic | 45.0% |
| TTGGCCTGCAATATGCAGAA+AGG | - | chr6_2:62237607-62237626 | Msa0922770:CDS | 45.0% | |
| ATGCCCTACAATGCAAAGAC+TGG | + | chr6_2:62237719-62237738 | None:intergenic | 45.0% | |
| GTCACCAAGTACATTAGGCA+AGG | + | chr6_2:62237766-62237785 | None:intergenic | 45.0% | |
| GATGAGGATTCAGAAGCAGG+AGG | + | chr6_2:62234894-62234913 | None:intergenic | 50.0% | |
| TTCTGTGAAGCATGGACACC+GGG | - | chr6_2:62235224-62235243 | Msa0922770:intron | 50.0% | |
| CGGGACACGCTTAATCCAAA+AGG | - | chr6_2:62235335-62235354 | Msa0922770:CDS | 50.0% | |
| CCTGAATCTCCTAGCTCAAC+TGG | + | chr6_2:62235434-62235453 | None:intergenic | 50.0% | |
| CCAGTTGAGCTAGGAGATTC+AGG | - | chr6_2:62235431-62235450 | Msa0922770:intron | 50.0% | |
| !! | TAGCTTTGAAAGGTGCCACG+TGG | + | chr6_2:62235730-62235749 | None:intergenic | 50.0% |
| GACGCTGCATGACCATACAT+AGG | - | chr6_2:62236014-62236033 | Msa0922770:intron | 50.0% | |
| ATCTGAGCTACCAGGCAAAC+AGG | + | chr6_2:62236208-62236227 | None:intergenic | 50.0% | |
| ACACGACACATGTCCGACAC+CGG | - | chr6_2:62235315-62235334 | Msa0922770:CDS | 55.0% | |
| GATTAAGCGTGTCCCGGTGT+CGG | + | chr6_2:62235331-62235350 | None:intergenic | 55.0% | |
| ATGGCGATGTCCTGTTTGCC+TGG | - | chr6_2:62236195-62236214 | Msa0922770:intron | 55.0% | |
| AGCAGTGTCTGTGTCGTGCC+CGG | + | chr6_2:62235245-62235264 | None:intergenic | 60.0% | |
| CACGACACATGTCCGACACC+GGG | - | chr6_2:62235316-62235335 | Msa0922770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 62234593 | 62237899 | 62234593 | ID=Msa0922770;Name=Msa0922770 |
| chr6_2 | mRNA | 62234593 | 62237899 | 62234593 | ID=Msa0922770-mRNA-1;Parent=Msa0922770;Name=Msa0922770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=67|1|1|1|1|1|4|339|182 |
| chr6_2 | exon | 62234593 | 62235006 | 62234593 | ID=Msa0922770-mRNA-1:exon:9633;Parent=Msa0922770-mRNA-1 |
| chr6_2 | exon | 62235275 | 62235381 | 62235275 | ID=Msa0922770-mRNA-1:exon:9632;Parent=Msa0922770-mRNA-1 |
| chr6_2 | exon | 62235540 | 62235608 | 62235540 | ID=Msa0922770-mRNA-1:exon:9631;Parent=Msa0922770-mRNA-1 |
| chr6_2 | exon | 62237535 | 62237899 | 62237535 | ID=Msa0922770-mRNA-1:exon:9630;Parent=Msa0922770-mRNA-1 |
| chr6_2 | five_prime_UTR | 62237833 | 62237899 | 62237833 | ID=Msa0922770-mRNA-1:five_prime_utr;Parent=Msa0922770-mRNA-1 |
| chr6_2 | CDS | 62237535 | 62237832 | 62237535 | ID=Msa0922770-mRNA-1:cds;Parent=Msa0922770-mRNA-1 |
| chr6_2 | CDS | 62235540 | 62235608 | 62235540 | ID=Msa0922770-mRNA-1:cds;Parent=Msa0922770-mRNA-1 |
| chr6_2 | CDS | 62235275 | 62235381 | 62235275 | ID=Msa0922770-mRNA-1:cds;Parent=Msa0922770-mRNA-1 |
| chr6_2 | CDS | 62234932 | 62235006 | 62234932 | ID=Msa0922770-mRNA-1:cds;Parent=Msa0922770-mRNA-1 |
| chr6_2 | three_prime_UTR | 62234593 | 62234931 | 62234593 | ID=Msa0922770-mRNA-1:three_prime_utr;Parent=Msa0922770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
