AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651350 MtrunA17_Chr4g0043941 96.960 329 10 0 12 340 4 332 0.0 656
Msa0651350 MtrunA17_Chr6g0448821 27.184 309 189 4 56 330 54 360 2.15e-35 132
Msa0651350 MtrunA17_Chr5g0428941 24.333 300 223 4 29 327 187 483 1.69e-31 124
Msa0651350 MtrunA17_Chr5g0428941 22.727 220 161 3 51 270 141 351 1.14e-13 71.6
Msa0651350 MtrunA17_Chr4g0034981 25.850 294 213 5 36 327 296 586 5.15e-31 123
Msa0651350 MtrunA17_Chr2g0294671 26.374 273 195 4 55 327 217 483 8.68e-27 110
Msa0651350 MtrunA17_Chr2g0294671 29.605 152 105 2 117 268 207 356 2.72e-14 73.6
Msa0651350 MtrunA17_Chr2g0294671 23.009 226 163 3 9 231 278 495 3.52e-12 67.0
Msa0651350 MtrunA17_Chr1g0212691 22.115 312 199 5 55 327 145 451 4.74e-25 105
Msa0651350 MtrunA17_Chr1g0212691 24.675 231 148 3 53 258 82 311 1.26e-16 80.9
Msa0651350 MtrunA17_Chr5g0445491 28.195 266 177 6 50 306 188 448 2.99e-24 103
Msa0651350 MtrunA17_Chr5g0445491 27.948 229 161 3 49 276 226 451 3.11e-19 88.6
Msa0651350 MtrunA17_Chr2g0304101 23.600 250 181 4 77 326 65 304 9.10e-18 82.8
Msa0651350 MtrunA17_Chr5g0417641 26.754 228 152 3 105 326 74 292 9.24e-17 79.7
Msa0651350 MtrunA17_Chr7g0250261 29.032 217 134 5 124 330 77 283 1.29e-16 79.0
Msa0651350 MtrunA17_Chr0c29g0494001 29.032 217 134 5 124 330 77 283 1.29e-16 79.0
Msa0651350 MtrunA17_Chr2g0311181 27.528 178 120 2 153 327 129 300 2.20e-16 79.0
Msa0651350 MtrunA17_Chr2g0296191 22.590 332 236 9 8 332 177 494 3.96e-12 67.4
Msa0651350 MtrunA17_Chr8g0339041 21.269 268 199 5 25 292 63 318 9.15e-12 65.5
Msa0651350 MtrunA17_Chr8g0391881 20.243 247 193 4 54 299 127 370 8.44e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651350 AT4G38160.4 66.154 325 108 2 12 334 4 328 7.28e-161 453
Msa0651350 AT4G38160.1 66.154 325 108 2 12 334 4 328 7.28e-161 453
Msa0651350 AT4G38160.2 66.154 325 108 2 12 334 4 328 2.13e-160 453
Msa0651350 AT4G38160.3 66.154 325 108 2 12 334 4 328 6.44e-160 452
Msa0651350 AT2G21710.1 25.424 295 215 5 37 329 304 595 1.87e-32 127
Msa0651350 AT1G78930.1 29.368 269 184 4 72 337 323 588 2.37e-31 124
Msa0651350 AT4G02990.2 21.935 310 204 3 54 327 184 491 3.03e-28 115
Msa0651350 AT4G02990.2 22.422 223 168 2 51 273 149 366 1.31e-15 78.2
Msa0651350 AT4G02990.1 21.935 310 204 3 54 327 184 491 3.03e-28 115
Msa0651350 AT4G02990.1 22.422 223 168 2 51 273 149 366 1.31e-15 78.2
Msa0651350 AT4G14605.2 27.757 263 184 4 65 327 212 468 1.34e-27 113
Msa0651350 AT4G14605.2 23.786 206 149 2 12 217 266 463 1.18e-13 72.0
Msa0651350 AT4G14605.1 27.757 263 184 4 65 327 212 468 1.34e-27 113
Msa0651350 AT4G14605.1 23.786 206 149 2 12 217 266 463 1.18e-13 72.0
Msa0651350 AT2G44020.1 24.679 312 191 5 55 327 150 456 5.59e-27 111
Msa0651350 AT2G44020.1 24.038 208 153 2 51 258 114 316 4.88e-16 79.3
Msa0651350 AT2G21710.2 25.000 256 187 5 37 290 304 556 1.49e-23 102
Msa0651350 AT2G21710.3 25.197 254 185 5 37 288 304 554 2.66e-23 101
Msa0651350 AT2G03050.2 27.004 237 166 4 92 327 40 270 3.27e-23 97.8
Msa0651350 AT2G03050.1 27.004 237 166 4 92 327 39 269 3.27e-23 97.8
Msa0651350 AT5G55580.2 25.475 263 176 6 54 306 83 335 9.86e-22 95.5
Msa0651350 AT5G55580.2 25.217 230 166 4 49 276 113 338 1.06e-18 86.7
Msa0651350 AT5G55580.1 25.475 263 176 6 54 306 189 441 2.54e-21 95.1
Msa0651350 AT5G55580.1 25.217 230 166 4 49 276 219 444 3.45e-18 85.9
Msa0651350 AT2G36000.2 26.562 192 134 2 136 326 122 307 2.30e-19 87.8
Msa0651350 AT2G36000.1 26.562 192 134 2 136 326 122 307 2.67e-19 87.8
Msa0651350 AT2G34620.1 23.645 203 153 1 124 326 90 290 6.34e-19 86.3
Msa0651350 AT2G34620.1 29.333 150 102 3 55 203 93 239 3.15e-12 67.0
Msa0651350 AT3G18870.1 29.851 201 135 5 132 330 76 272 3.85e-18 83.6
Msa0651350 AT5G54180.1 27.481 262 179 9 69 326 234 488 8.50e-18 84.7
Msa0651350 AT5G55580.3 24.859 177 130 3 49 223 219 394 3.37e-14 73.6
Msa0651350 AT5G55580.3 25.116 215 141 6 54 258 189 393 6.24e-13 69.7
Msa0651350 AT5G64950.1 29.448 163 108 5 98 258 52 209 4.96e-11 63.9
Msa0651350 AT1G21150.2 19.392 263 199 5 10 269 148 400 7.83e-11 63.5
Msa0651350 AT1G21150.1 19.392 263 199 5 10 269 84 336 9.09e-11 63.2
Msa0651350 AT1G21150.3 19.392 263 199 5 10 269 48 300 9.96e-11 62.8

Find 55 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACCAAGTACAAGAATTT+TGG 0.151290 4_3:+58749062 None:intergenic
GATTAAGGACCCGTATATTA+TGG 0.175262 4_3:-58748746 Msa0651350:CDS
GCGAACGAGCGGATGAAAAT+TGG 0.194380 4_3:-58749146 Msa0651350:CDS
GATTAATTTGTAGAGTAAAA+TGG 0.219627 4_3:-58749286 Msa0651350:intron
AGAGAAGCTTTGTCCTCTTT+TGG 0.259572 4_3:-58748929 Msa0651350:CDS
CAAGAGTGTTCGGAATTCTT+TGG 0.260167 4_3:-58748506 Msa0651350:CDS
ACACTATAACCCATAATATA+CGG 0.287612 4_3:+58748736 None:intergenic
CGAACACTCTTGATCAAAAT+AGG 0.322211 4_3:+58748517 None:intergenic
TTTGACTGAGCAGGATCTTC+AGG 0.331599 4_3:-58748668 Msa0651350:CDS
TTAAAGAACTGTGGATTTCA+TGG 0.334993 4_3:-58748574 Msa0651350:CDS
AAGAAGTTCCACTTGAAGTT+TGG 0.341154 4_3:-58748313 Msa0651350:CDS
TTGAAGTTTGGCTTGTTAGA+AGG 0.350213 4_3:-58748301 Msa0651350:CDS
TGGGAGTATTTGAAAACAAT+TGG 0.351216 4_3:-58749126 Msa0651350:CDS
TAGAGATGTGGATAAGGTTT+TGG 0.354515 4_3:-58748614 Msa0651350:CDS
TGGGTTATAGTGTTGATAAA+AGG 0.361012 4_3:-58748726 Msa0651350:CDS
TGGCCGGCAGATAGTTGATT+TGG 0.380260 4_3:-58748554 Msa0651350:CDS
TGCCCCAAAATTCTTGTACT+TGG 0.381501 4_3:-58749066 Msa0651350:CDS
ATTAAGGACCCGTATATTAT+GGG 0.382034 4_3:-58748745 Msa0651350:CDS
CTTGATAAAGACGGAATGAT+TGG 0.389340 4_3:-58748778 Msa0651350:CDS
GCTGCTGTTATTGCCGCTAC+TGG 0.445431 4_3:+58749260 None:intergenic
CGAACGAGCGGATGAAAATT+GGG 0.447845 4_3:-58749145 Msa0651350:CDS
TTTGAGTAGAGATGTGGATA+AGG 0.454342 4_3:-58748620 Msa0651350:CDS
CAGATAGTTGATTTGGTGGT+TGG 0.459004 4_3:-58748547 Msa0651350:CDS
GTGAAATTTCTTGCTAGTGT+TGG 0.461499 4_3:-58748802 Msa0651350:CDS
ATGCTATAACTAATAAGCCT+AGG 0.489054 4_3:+58748847 None:intergenic
CAATGAAAAGATTGTTCCAA+TGG 0.489343 4_3:-58749040 Msa0651350:CDS
TTGCAGCTTGAGTGAAATGC+TGG 0.494640 4_3:-58748347 Msa0651350:CDS
TATCCATGCTTCTTTCGTCA+TGG 0.501505 4_3:-58748424 Msa0651350:CDS
GTCGATAGGTTTGACTGAGC+AGG 0.509092 4_3:-58748677 Msa0651350:CDS
CCGGCAGATAGTTGATTTGG+TGG 0.512541 4_3:-58748551 Msa0651350:CDS
ACACTACAAGAGAGTATTTG+AGG 0.513102 4_3:+58748955 None:intergenic
AGAACTGTGGATTTCATGGC+CGG 0.517285 4_3:-58748570 Msa0651350:CDS
CACTATAACCCATAATATAC+GGG 0.530664 4_3:+58748737 None:intergenic
CACTACAAGAGAGTATTTGA+GGG 0.546905 4_3:+58748956 None:intergenic
TGCTATAACTAATAAGCCTA+GGG 0.547400 4_3:+58748848 None:intergenic
TAAAAGGCTTCGTCCTACTT+CGG 0.555828 4_3:-58748710 Msa0651350:CDS
CTAACAAGCCAAACTTCAAG+TGG 0.558319 4_3:+58748305 None:intergenic
GTGTTGAGACATTCAACCAT+TGG 0.559854 4_3:+58749024 None:intergenic
TTCGGAATTCTTTGGAACCG+AGG 0.584467 4_3:-58748498 Msa0651350:CDS
ATACGGAAGGTGCTCAACAT+CGG 0.595526 4_3:+58748180 None:intergenic
GACAGCGCATCGCGAACGAG+CGG 0.597345 4_3:-58749157 Msa0651350:CDS
TCAAATACTCTCTTGTAGTG+TGG 0.603146 4_3:-58748953 Msa0651350:CDS
AGGACATACTTTGAGTAACT+AGG 0.611172 4_3:-58748281 Msa0651350:exon
ATAGCAGATGCAACTTCATG+TGG 0.611424 4_3:+58748988 None:intergenic
CGGAAGGTGCTCAACATCGG+CGG 0.611725 4_3:+58748183 None:intergenic
CGACATGGGTATGATGGGGT+CGG 0.620623 4_3:-58749553 None:intergenic
AGGCCATGACGAAAGAAGCA+TGG 0.620961 4_3:+58748421 None:intergenic
ACACTCTTGATCAAAATAGG+AGG 0.622517 4_3:+58748520 None:intergenic
CCACCAAATCAACTATCTGC+CGG 0.624823 4_3:+58748551 None:intergenic
TAGCATTGAGACGAAGATGA+CGG 0.632455 4_3:-58748830 Msa0651350:CDS
GGCACAAGCTCTTAAAGCAG+AGG 0.635201 4_3:-58748378 Msa0651350:CDS
AGTGTTGGTCTTGATAAAGA+CGG 0.642183 4_3:-58748787 Msa0651350:CDS
AGTAAAATGGAAACCAGTAG+CGG 0.644038 4_3:-58749273 Msa0651350:CDS
ACATCTCTACTCAAAATCGA+CGG 0.644998 4_3:+58748628 None:intergenic
ATAACAGCAGCAACATGATG+TGG 0.646285 4_3:-58749248 Msa0651350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_3:58748442-58748461 Msa0651350:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_3:58748864-58748883 Msa0651350:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_3:58748967-58748986 Msa0651350:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_3:58749145-58749164 Msa0651350:CDS 20.0%
!!! GATTAATTTGTAGAGTAAAA+TGG - chr4_3:58748442-58748461 Msa0651350:CDS 20.0%
!!! AAATTTTATTGTTAAACCCT+AGG - chr4_3:58748864-58748883 Msa0651350:CDS 20.0%
!! GATTGGAAAAATTATGATTA+AGG - chr4_3:58748967-58748986 Msa0651350:CDS 20.0%
!!! TATGATTTTTTAAAGAACTG+TGG - chr4_3:58749145-58749164 Msa0651350:CDS 20.0%
! AAATGAAGAAGTTAACGTAA+GGG + chr4_3:58748329-58748348 None:intergenic 25.0%
! TAAATGAAGAAGTTAACGTA+AGG + chr4_3:58748330-58748349 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_3:58748534-58748553 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_3:58748818-58748837 Msa0651350:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_3:58748849-58748868 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_3:58748995-58749014 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_3:58749256-58749275 Msa0651350:CDS 25.0%
! AAATGAAGAAGTTAACGTAA+GGG + chr4_3:58748329-58748348 None:intergenic 25.0%
! TAAATGAAGAAGTTAACGTA+AGG + chr4_3:58748330-58748349 None:intergenic 25.0%
!!! TGTGAACATTTTTTGTATGA+TGG + chr4_3:58748534-58748553 None:intergenic 25.0%
!!! TTGGCATTTTTTCAAACATT+AGG - chr4_3:58748818-58748837 Msa0651350:CDS 25.0%
!!! AATTTTCCCGATTTGTTTTT+CGG + chr4_3:58748849-58748868 None:intergenic 25.0%
! ACACTATAACCCATAATATA+CGG + chr4_3:58748995-58749014 None:intergenic 25.0%
!!! AAGTTTTTGGTAGATGTAAT+GGG - chr4_3:58749256-58749275 Msa0651350:CDS 25.0%
ACAATTACCTGAAGTAGATA+AGG + chr4_3:58748299-58748318 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_3:58748602-58748621 Msa0651350:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_3:58748668-58748687 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_3:58748688-58748707 Msa0651350:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_3:58748815-58748834 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_3:58748848-58748867 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_3:58748883-58748902 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_3:58748884-58748903 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_3:58748983-58749002 Msa0651350:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_3:58748994-58749013 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_3:58749002-58749021 Msa0651350:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_3:58749154-58749173 Msa0651350:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_3:58749212-58749231 Msa0651350:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_3:58749255-58749274 Msa0651350:CDS 30.0%
TGAAGAAAAAATTAGTGTCG+CGG - chr4_3:58749329-58749348 Msa0651350:intron 30.0%
ACAATTACCTGAAGTAGATA+AGG + chr4_3:58748299-58748318 None:intergenic 30.0%
!! TGGGAGTATTTGAAAACAAT+TGG - chr4_3:58748602-58748621 Msa0651350:CDS 30.0%
! AGACCAAGTACAAGAATTTT+GGG + chr4_3:58748668-58748687 None:intergenic 30.0%
CAATGAAAAGATTGTTCCAA+TGG - chr4_3:58748688-58748707 Msa0651350:CDS 30.0%
GTTTGAAAAAATGCCAAAAG+AGG + chr4_3:58748815-58748834 None:intergenic 30.0%
!! ATTTTCCCGATTTGTTTTTC+GGG + chr4_3:58748848-58748867 None:intergenic 30.0%
TGCTATAACTAATAAGCCTA+GGG + chr4_3:58748883-58748902 None:intergenic 30.0%
ATGCTATAACTAATAAGCCT+AGG + chr4_3:58748884-58748903 None:intergenic 30.0%
ATTAAGGACCCGTATATTAT+GGG - chr4_3:58748983-58749002 Msa0651350:CDS 30.0%
CACTATAACCCATAATATAC+GGG + chr4_3:58748994-58749013 None:intergenic 30.0%
!! TGGGTTATAGTGTTGATAAA+AGG - chr4_3:58749002-58749021 Msa0651350:CDS 30.0%
TTAAAGAACTGTGGATTTCA+TGG - chr4_3:58749154-58749173 Msa0651350:CDS 30.0%
!!! CTATTTTGATCAAGAGTGTT+CGG - chr4_3:58749212-58749231 Msa0651350:CDS 30.0%
!!! CAAGTTTTTGGTAGATGTAA+TGG - chr4_3:58749255-58749274 Msa0651350:CDS 30.0%
TGAAGAAAAAATTAGTGTCG+CGG - chr4_3:58749329-58749348 Msa0651350:intron 30.0%
!! AAGTAGATAAGGCACTGAAA+TGG + chr4_3:58748288-58748307 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_3:58748455-58748474 Msa0651350:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_3:58748490-58748509 Msa0651350:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_3:58748647-58748666 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_3:58748667-58748686 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_3:58748669-58748688 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_3:58748775-58748794 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_3:58748776-58748795 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_3:58748775-58748794 Msa0651350:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_3:58748926-58748945 Msa0651350:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_3:58748941-58748960 Msa0651350:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_3:58748950-58748969 Msa0651350:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_3:58748982-58749001 Msa0651350:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_3:58749103-58749122 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_3:58749108-58749127 Msa0651350:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_3:58749114-58749133 Msa0651350:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_3:58749211-58749230 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_3:58749214-58749233 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_3:58749250-58749269 None:intergenic 35.0%
!!! GCGACACTAATTTTTTCTTC+AGG + chr4_3:58749330-58749349 None:intergenic 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_3:58749415-58749434 Msa0651350:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_3:58749427-58749446 Msa0651350:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_3:58749447-58749466 Msa0651350:intron 35.0%
!! AAGTAGATAAGGCACTGAAA+TGG + chr4_3:58748288-58748307 None:intergenic 35.0%
AGTAAAATGGAAACCAGTAG+CGG - chr4_3:58748455-58748474 Msa0651350:CDS 35.0%
! CAACATGATGTGGTTTTTCA+AGG - chr4_3:58748490-58748509 Msa0651350:CDS 35.0%
!!! GGGCATTTTGAAACAATTGA+AGG + chr4_3:58748647-58748666 None:intergenic 35.0%
! GACCAAGTACAAGAATTTTG+GGG + chr4_3:58748667-58748686 None:intergenic 35.0%
! GAGACCAAGTACAAGAATTT+TGG + chr4_3:58748669-58748688 None:intergenic 35.0%
!! CACTACAAGAGAGTATTTGA+GGG + chr4_3:58748775-58748794 None:intergenic 35.0%
!! ACACTACAAGAGAGTATTTG+AGG + chr4_3:58748776-58748795 None:intergenic 35.0%
TCAAATACTCTCTTGTAGTG+TGG - chr4_3:58748775-58748794 Msa0651350:CDS 35.0%
GTGAAATTTCTTGCTAGTGT+TGG - chr4_3:58748926-58748945 Msa0651350:CDS 35.0%
!! AGTGTTGGTCTTGATAAAGA+CGG - chr4_3:58748941-58748960 Msa0651350:CDS 35.0%
CTTGATAAAGACGGAATGAT+TGG - chr4_3:58748950-58748969 Msa0651350:CDS 35.0%
GATTAAGGACCCGTATATTA+TGG - chr4_3:58748982-58749001 Msa0651350:CDS 35.0%
ACATCTCTACTCAAAATCGA+CGG + chr4_3:58749103-58749122 None:intergenic 35.0%
TTTGAGTAGAGATGTGGATA+AGG - chr4_3:58749108-58749127 Msa0651350:CDS 35.0%
! TAGAGATGTGGATAAGGTTT+TGG - chr4_3:58749114-58749133 Msa0651350:CDS 35.0%
ACACTCTTGATCAAAATAGG+AGG + chr4_3:58749211-58749230 None:intergenic 35.0%
CGAACACTCTTGATCAAAAT+AGG + chr4_3:58749214-58749233 None:intergenic 35.0%
TCTACCAAAAACTTGATCCT+CGG + chr4_3:58749250-58749269 None:intergenic 35.0%
!!! GCGACACTAATTTTTTCTTC+AGG + chr4_3:58749330-58749349 None:intergenic 35.0%
AAGAAGTTCCACTTGAAGTT+TGG - chr4_3:58749415-58749434 Msa0651350:intron 35.0%
!! TTGAAGTTTGGCTTGTTAGA+AGG - chr4_3:58749427-58749446 Msa0651350:intron 35.0%
AGGACATACTTTGAGTAACT+AGG - chr4_3:58749447-58749466 Msa0651350:intron 35.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_3:58748231-58748250 None:intergenic 40.0%
ACTGAAATGGCGAAGAAAAG+AGG + chr4_3:58748275-58748294 None:intergenic 40.0%
TTCAGTGCCTTATCTACTTC+AGG - chr4_3:58748289-58748308 Msa0651350:CDS 40.0%
!! GAAGTTAACGTAAGGGTGTT+AGG + chr4_3:58748322-58748341 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_3:58748480-58748499 Msa0651350:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_3:58748497-58748516 Msa0651350:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_3:58748662-58748681 Msa0651350:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_3:58748707-58748726 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+TGG + chr4_3:58748743-58748762 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_3:58748799-58748818 Msa0651350:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_3:58748898-58748917 Msa0651350:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_3:58749018-58749037 Msa0651350:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_3:58749034-58749053 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_3:58749037-58749056 Msa0651350:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_3:58749102-58749121 Msa0651350:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_3:58749181-58749200 Msa0651350:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_3:58749222-58749241 Msa0651350:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_3:58749304-58749323 Msa0651350:intron 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_3:58749426-58749445 None:intergenic 40.0%
AACTGAAGAAGAAGACAGCA+TGG + chr4_3:58748231-58748250 None:intergenic 40.0%
ACTGAAATGGCGAAGAAAAG+AGG + chr4_3:58748275-58748294 None:intergenic 40.0%
TTCAGTGCCTTATCTACTTC+AGG - chr4_3:58748289-58748308 Msa0651350:CDS 40.0%
!! GAAGTTAACGTAAGGGTGTT+AGG + chr4_3:58748322-58748341 None:intergenic 40.0%
ATAACAGCAGCAACATGATG+TGG - chr4_3:58748480-58748499 Msa0651350:CDS 40.0%
!!! ATGTGGTTTTTCAAGGACAG+AGG - chr4_3:58748497-58748516 Msa0651350:CDS 40.0%
TGCCCCAAAATTCTTGTACT+TGG - chr4_3:58748662-58748681 Msa0651350:CDS 40.0%
GTGTTGAGACATTCAACCAT+TGG + chr4_3:58748707-58748726 None:intergenic 40.0%
ATAGCAGATGCAACTTCATG+TGG + chr4_3:58748743-58748762 None:intergenic 40.0%
!! AGAGAAGCTTTGTCCTCTTT+TGG - chr4_3:58748799-58748818 Msa0651350:CDS 40.0%
! TAGCATTGAGACGAAGATGA+CGG - chr4_3:58748898-58748917 Msa0651350:CDS 40.0%
TAAAAGGCTTCGTCCTACTT+CGG - chr4_3:58749018-58749037 Msa0651350:CDS 40.0%
GACTTCAAAAACTCCGAAGT+AGG + chr4_3:58749034-58749053 None:intergenic 40.0%
!!! TCGGAGTTTTTGAAGTCGAT+AGG - chr4_3:58749037-58749056 Msa0651350:CDS 40.0%
!! GTCGATTTTGAGTAGAGATG+TGG - chr4_3:58749102-58749121 Msa0651350:CDS 40.0%
!! CAGATAGTTGATTTGGTGGT+TGG - chr4_3:58749181-58749200 Msa0651350:CDS 40.0%
!! CAAGAGTGTTCGGAATTCTT+TGG - chr4_3:58749222-58749241 Msa0651350:CDS 40.0%
TATCCATGCTTCTTTCGTCA+TGG - chr4_3:58749304-58749323 Msa0651350:intron 40.0%
CTAACAAGCCAAACTTCAAG+TGG + chr4_3:58749426-58749445 None:intergenic 40.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_3:58748227-58748246 None:intergenic 45.0%
CGAACGAGCGGATGAAAATT+GGG - chr4_3:58748583-58748602 Msa0651350:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_3:58748839-58748858 Msa0651350:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_3:58748840-58748859 Msa0651350:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_3:58749060-58749079 Msa0651350:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_3:58749158-58749177 Msa0651350:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_3:58749180-58749199 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_3:58749230-58749249 Msa0651350:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_3:58749243-58749262 Msa0651350:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_3:58749381-58749400 Msa0651350:intron 45.0%
ATAGATTCTTACCGACCCCA+TGG + chr4_3:58748189-58748208 None:intergenic 45.0%
GAAGAAGAAGACAGCATGGA+TGG + chr4_3:58748227-58748246 None:intergenic 45.0%
CGAACGAGCGGATGAAAATT+GGG - chr4_3:58748583-58748602 Msa0651350:CDS 45.0%
GGTGTGCCCGAAAAACAAAT+CGG - chr4_3:58748839-58748858 Msa0651350:CDS 45.0%
GTGTGCCCGAAAAACAAATC+GGG - chr4_3:58748840-58748859 Msa0651350:CDS 45.0%
TTTGACTGAGCAGGATCTTC+AGG - chr4_3:58749060-58749079 Msa0651350:CDS 45.0%
AGAACTGTGGATTTCATGGC+CGG - chr4_3:58749158-58749177 Msa0651350:CDS 45.0%
CCACCAAATCAACTATCTGC+CGG + chr4_3:58749180-58749199 None:intergenic 45.0%
!! TTCGGAATTCTTTGGAACCG+AGG - chr4_3:58749230-58749249 Msa0651350:CDS 45.0%
! GGAACCGAGGATCAAGTTTT+TGG - chr4_3:58749243-58749262 Msa0651350:CDS 45.0%
TTGCAGCTTGAGTGAAATGC+TGG - chr4_3:58749381-58749400 Msa0651350:intron 45.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_3:58748219-58748238 None:intergenic 50.0%
GCGAACGAGCGGATGAAAAT+TGG - chr4_3:58748582-58748601 Msa0651350:CDS 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_3:58749051-58749070 Msa0651350:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_3:58749174-58749193 Msa0651350:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_3:58749177-58749196 Msa0651350:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_3:58749310-58749329 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_3:58749350-58749369 Msa0651350:intron 50.0%
AGACAGCATGGATGGAGAAG+AGG + chr4_3:58748219-58748238 None:intergenic 50.0%
GCGAACGAGCGGATGAAAAT+TGG - chr4_3:58748582-58748601 Msa0651350:CDS 50.0%
GTCGATAGGTTTGACTGAGC+AGG - chr4_3:58749051-58749070 Msa0651350:CDS 50.0%
TGGCCGGCAGATAGTTGATT+TGG - chr4_3:58749174-58749193 Msa0651350:CDS 50.0%
!! CCGGCAGATAGTTGATTTGG+TGG - chr4_3:58749177-58749196 Msa0651350:CDS 50.0%
AGGCCATGACGAAAGAAGCA+TGG + chr4_3:58749310-58749329 None:intergenic 50.0%
GGCACAAGCTCTTAAAGCAG+AGG - chr4_3:58749350-58749369 Msa0651350:intron 50.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_3:58748471-58748490 None:intergenic 55.0%
GCTGCTGTTATTGCCGCTAC+TGG + chr4_3:58748471-58748490 None:intergenic 55.0%
GACAGCGCATCGCGAACGAG+CGG - chr4_3:58748571-58748590 Msa0651350:CDS 65.0%
GACAGCGCATCGCGAACGAG+CGG - chr4_3:58748571-58748590 Msa0651350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58748188 58749562 58748188 ID=Msa0651350;Name=Msa0651350
chr4_3 mRNA 58748188 58749562 58748188 ID=Msa0651350-mRNA-1;Parent=Msa0651350;Name=Msa0651350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.5|0.5|1|1|2|94|340
chr4_3 exon 58748188 58749295 58748188 ID=Msa0651350-mRNA-1:exon:15623;Parent=Msa0651350-mRNA-1
chr4_3 exon 58749554 58749562 58749554 ID=Msa0651350-mRNA-1:exon:15622;Parent=Msa0651350-mRNA-1
chr4_3 CDS 58749554 58749562 58749554 ID=Msa0651350-mRNA-1:cds;Parent=Msa0651350-mRNA-1
chr4_3 CDS 58748282 58749295 58748282 ID=Msa0651350-mRNA-1:cds;Parent=Msa0651350-mRNA-1
chr4_3 three_prime_UTR 58748188 58748281 58748188 ID=Msa0651350-mRNA-1:three_prime_utr;Parent=Msa0651350-mRNA-1
Gene Sequence

>Msa0651350

ATGGGGTCGAGTAAAATGGAAACCAGTAGCGGCAATAACAGCAGCAACATGATGTGGTTTTTCAAGGACAGAGGCTTTGATGATACCATCATACAAAAAATGTTCACAAAATGCAAGCGTCTCGAGACAGCGCATCGCGAACGAGCGGATGAAAATTGGGAGTATTTGAAAACAATTGGTATTCAAGAAAGAAAACTTCCTTCAATTGTTTCAAAATGCCCCAAAATTCTTGTACTTGGTCTCAATGAAAAGATTGTTCCAATGGTTGAATGTCTCAACACACTTGCAACTAAGCCACATGAAGTTGCATCTGCTATAGCTAAGTTCCCTCAAATACTCTCTTGTAGTGTGGAAGAGAAGCTTTGTCCTCTTTTGGCATTTTTTCAAACATTAGGTGTGCCCGAAAAACAAATCGGGAAAATTTTATTGTTAAACCCTAGGCTTATTAGTTATAGCATTGAGACGAAGATGACGGAAATTGTGAAATTTCTTGCTAGTGTTGGTCTTGATAAAGACGGAATGATTGGAAAAATTATGATTAAGGACCCGTATATTATGGGTTATAGTGTTGATAAAAGGCTTCGTCCTACTTCGGAGTTTTTGAAGTCGATAGGTTTGACTGAGCAGGATCTTCAGGTATTAGCGTTGAACTTTCCGTCGATTTTGAGTAGAGATGTGGATAAGGTTTTGGTACACAATTATGATTTTTTAAAGAACTGTGGATTTCATGGCCGGCAGATAGTTGATTTGGTGGTTGGTTATCCTCCTATTTTGATCAAGAGTGTTCGGAATTCTTTGGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGAAGAGAAGTTGATGAAATTATTGATTATCCATGCTTCTTTCGTCATGGCCTGAAGAAAAAATTAGTGTCGCGGCACAAGCTCTTAAAGCAGAGGAATTTAAATTGCAGCTTGAGTGAAATGCTGGACTGTAATGAGAAGAAGTTCCACTTGAAGTTTGGCTTGTTAGAAGGACATACTTTGAGTAACTAG

Protein sequence

>Msa0651350

MGSSKMETSSGNNSSNMMWFFKDRGFDDTIIQKMFTKCKRLETAHRERADENWEYLKTIGIQERKLPSIVSKCPKILVLGLNEKIVPMVECLNTLATKPHEVASAIAKFPQILSCSVEEKLCPLLAFFQTLGVPEKQIGKILLLNPRLISYSIETKMTEIVKFLASVGLDKDGMIGKIMIKDPYIMGYSVDKRLRPTSEFLKSIGLTEQDLQVLALNFPSILSRDVDKVLVHNYDFLKNCGFHGRQIVDLVVGYPPILIKSVRNSLEPRIKFLVDVMGREVDEIIDYPCFFRHGLKKKLVSRHKLLKQRNLNCSLSEMLDCNEKKFHLKFGLLEGHTLSN*