AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470610 MtrunA17_Chr3g0125231 87.812 320 9 1 1 290 1 320 0.0 561
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470610 AT1G21600.2 61.830 317 78 3 14 290 15 328 1.27e-124 359
Msa0470610 AT1G21600.1 61.830 317 78 3 14 290 15 328 1.27e-124 359

Find 101 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCGCGCAAAGTGATTT+TGG 0.230241 3_3:+72734767 Msa0470610:CDS
CTCCATTTCTTCTCTGGATT+GGG 0.235829 3_3:-72736872 None:intergenic
GGATGAGGGTTGTGGAGTTC+TGG 0.272680 3_3:-72733685 None:intergenic
CTATAATCAACAAGAGTATC+AGG 0.279221 3_3:-72733954 None:intergenic
TCTCCATTTCTTCTCTGGAT+TGG 0.291430 3_3:-72736873 None:intergenic
GAGATTTCAGCACTTCAAAT+TGG 0.291938 3_3:+72736914 Msa0470610:CDS
GACATTTGTGTGCAAGTTGC+TGG 0.295958 3_3:+72737056 Msa0470610:three_prime_UTR
GAGGAAGGAGGTGGTGGAAA+TGG 0.312479 3_3:-72733631 None:intergenic
ATGTCTCTCCATTTCTTCTC+TGG 0.315505 3_3:-72736878 None:intergenic
CGTCTTTCTATGACAGTTGT+TGG 0.328642 3_3:-72736841 None:intergenic
TAGATTGTGATTTCTTTATT+CGG 0.352075 3_3:+72734012 Msa0470610:CDS
AAATCATAAACATCATTATC+AGG 0.361290 3_3:-72734047 None:intergenic
TCTGGTAATAGACTTAGTTT+TGG 0.373057 3_3:-72735487 None:intergenic
CACACATGTGACGTGTTAGA+TGG 0.373174 3_3:-72737000 None:intergenic
ATTGAATAAACATCTGTATC+AGG 0.375965 3_3:-72734175 None:intergenic
TTTATTCAGTGAAAATGAAC+CGG 0.379204 3_3:-72737263 None:intergenic
CGAGATGGACGACGATGAAA+TGG 0.382841 3_3:+72733824 Msa0470610:CDS
GTGACGGTGGTGAGAGGAAG+AGG 0.384198 3_3:-72733650 None:intergenic
GAAGAGGAGGATGAGGGTTG+TGG 0.388541 3_3:-72733693 None:intergenic
GGATCTCGACGTGCATCAAC+AGG 0.390819 3_3:-72734812 None:intergenic
ATGATTGTGCCAAGCATGAT+AGG 0.408988 3_3:+72736972 Msa0470610:three_prime_UTR
TTTGAAAGAAGAGGAGGATG+AGG 0.409543 3_3:-72733700 None:intergenic
GGGAGGTTGAGTTTAATTGC+CGG 0.409660 3_3:-72737027 None:intergenic
GGCCCAATCCAGAGAAGAAA+TGG 0.411349 3_3:+72736870 Msa0470610:CDS
GAGGAAGAGGAAGGAGGTGG+TGG 0.417739 3_3:-72733637 None:intergenic
TCGTCGGCACGGGTCAAGAA+TGG 0.418144 3_3:-72733768 None:intergenic
GGGAGACCCTGAGTTTGTCC+TGG 0.423102 3_3:+72735437 Msa0470610:CDS
AGGTTTGAGTTTGAAAGAAG+AGG 0.432547 3_3:-72733709 None:intergenic
GGCATTGGTGCAAGAACCTT+GGG 0.433890 3_3:-72734199 None:intergenic
CAACTGTAGGTCACTGTCAC+TGG 0.434613 3_3:-72737128 None:intergenic
TATTACCAGAGCCAAAGTTC+TGG 0.440100 3_3:+72735500 Msa0470610:CDS
GCCGAGTGGTGGTTGGAGAT+TGG 0.448509 3_3:-72733740 None:intergenic
TTACACGCTATAATTGAAGT+TGG 0.456909 3_3:-72733506 None:intergenic
TCAAAATCCAGGACAAACTC+AGG 0.469203 3_3:-72735444 None:intergenic
TAAACATCATTATCAGGATC+AGG 0.472660 3_3:-72734041 None:intergenic
ACAGTTCCTTACCAGAACTT+TGG 0.472787 3_3:-72735511 None:intergenic
TTTGAGTTTGAAAGAAGAGG+AGG 0.473058 3_3:-72733706 None:intergenic
CCTTACCAGAACTTTGGCTC+TGG 0.478270 3_3:-72735505 None:intergenic
AAAAGCAGTGAAGTTGAAGT+AGG 0.478994 3_3:-72733583 None:intergenic
TGAGAGGAAGAGGAAGGAGG+TGG 0.485038 3_3:-72733640 None:intergenic
TTGAAAGAAGAGGAGGATGA+GGG 0.486331 3_3:-72733699 None:intergenic
ATCTGAGAGGGAAGTTGAGA+AGG 0.487075 3_3:+72734844 Msa0470610:CDS
AGGCATTGGTGCAAGAACCT+TGG 0.491138 3_3:-72734200 None:intergenic
CGCAATGTCAACATCGCCAT+TGG 0.494286 3_3:-72733889 None:intergenic
TCTTGCACCAATGCCTCAAA+AGG 0.494792 3_3:+72734207 Msa0470610:CDS
CGGTGGTGAGAGGAAGAGGA+AGG 0.497986 3_3:-72733646 None:intergenic
AGCAGTGAAGTTGAAGTAGG+AGG 0.503771 3_3:-72733580 None:intergenic
TGGTGAGAGGAAGAGGAAGG+AGG 0.510187 3_3:-72733643 None:intergenic
GTCGTCCATCTCGTAGTCAT+CGG 0.515726 3_3:-72733814 None:intergenic
GTGGTAGTGACGGTGGTGAG+AGG 0.516167 3_3:-72733656 None:intergenic
CGTCGGCACGGGTCAAGAAT+GGG 0.517230 3_3:-72733767 None:intergenic
CATAAATCTCCTCAAAATCC+AGG 0.518668 3_3:-72735455 None:intergenic
ATGAGCTTCGTTTCTACGCA+GGG 0.519872 3_3:+72733924 Msa0470610:CDS
GTTGGAGATTGGAGGATGAG+AGG 0.520595 3_3:-72733729 None:intergenic
CACGTCACATGTGTGTATAC+CGG 0.526679 3_3:+72737008 Msa0470610:three_prime_UTR
TCGTCCATCTCGTAGTCATC+GGG 0.529981 3_3:-72733813 None:intergenic
CTTCGTTTCTACGCAGGGGT+GGG 0.531782 3_3:+72733929 Msa0470610:CDS
CGACGTCGCCATCGTCGGCA+CGG 0.533875 3_3:-72733779 None:intergenic
TTCTTGACCCGTGCCGACGA+TGG 0.538855 3_3:+72733771 Msa0470610:CDS
GACGTCGCCATCGTCGGCAC+GGG 0.543166 3_3:-72733778 None:intergenic
CTTAAAATACATTCAACTGT+AGG 0.545072 3_3:-72737141 None:intergenic
GGTTGTGGAGTTCTGGAAAG+AGG 0.546553 3_3:-72733678 None:intergenic
GTTGTAATTTGTTAGAGATG+CGG 0.547807 3_3:+72737094 Msa0470610:three_prime_UTR
CAAGAATGGGTTGCGCCGAG+TGG 0.561128 3_3:-72733754 None:intergenic
TTATTCAGTGAAAATGAACC+GGG 0.561926 3_3:-72737262 None:intergenic
AGATTCGACGTCGCCATCGT+CGG 0.566797 3_3:-72733784 None:intergenic
GCTTCGTTTCTACGCAGGGG+TGG 0.568717 3_3:+72733928 Msa0470610:CDS
ATGGAACTACCTATCATGCT+TGG 0.571462 3_3:-72736981 None:intergenic
GATGGCGACGTCGAATCTGC+CGG 0.573124 3_3:+72733789 Msa0470610:CDS
GGGTTGCGCCGAGTGGTGGT+TGG 0.574916 3_3:-72733747 None:intergenic
TATGAGCTTCGTTTCTACGC+AGG 0.577432 3_3:+72733923 Msa0470610:CDS
GCAGTGAAGTTGAAGTAGGA+GGG 0.587618 3_3:-72733579 None:intergenic
AGATGTTTATTCAATTCCCA+AGG 0.590924 3_3:+72734183 Msa0470610:CDS
GAATGGGTTGCGCCGAGTGG+TGG 0.591126 3_3:-72733751 None:intergenic
CATCTCGTAGTCATCGGGAC+CGG 0.596039 3_3:-72733808 None:intergenic
CTGGAAAGAGGTGGTAGTGA+CGG 0.604135 3_3:-72733666 None:intergenic
TCCTCTGTATAAATCTGAGA+GGG 0.607300 3_3:+72734832 Msa0470610:CDS
TGTCATAGAAAGACGAGAGT+GGG 0.608832 3_3:+72736849 Msa0470610:CDS
CAATGAGAACAAATATAACC+CGG 0.610157 3_3:+72737244 Msa0470610:three_prime_UTR
GGACGACGATGAAATGGAGG+AGG 0.611612 3_3:+72733830 Msa0470610:CDS
GAGTGGTGGTTGGAGATTGG+AGG 0.612677 3_3:-72733737 None:intergenic
TCCAATCTCCAACCACCACT+CGG 0.620787 3_3:+72733739 Msa0470610:CDS
CAAAATCCAGGACAAACTCA+GGG 0.621593 3_3:-72735443 None:intergenic
CTGTCATAGAAAGACGAGAG+TGG 0.622818 3_3:+72736848 Msa0470610:CDS
TCCCTCTCAGATTTATACAG+AGG 0.623624 3_3:-72734833 None:intergenic
TATAATCAACAAGAGTATCA+GGG 0.625404 3_3:-72733953 None:intergenic
GATCTCGACGTGCATCAACA+GGG 0.627497 3_3:-72734811 None:intergenic
TGTGGAGTTCTGGAAAGAGG+TGG 0.636252 3_3:-72733675 None:intergenic
ACATCATTATCAGGATCAGG+AGG 0.639466 3_3:-72734038 None:intergenic
TCATGCTTGGCACAATCATG+AGG 0.641536 3_3:-72736968 None:intergenic
TGAGCTTCGTTTCTACGCAG+GGG 0.649809 3_3:+72733925 Msa0470610:CDS
GAATAAACATCTGTATCAGG+AGG 0.651394 3_3:-72734172 None:intergenic
TGGCGATGTTGACATTGCGA+CGG 0.651724 3_3:+72733893 Msa0470610:CDS
ATCTCGACGTGCATCAACAG+GGG 0.655844 3_3:-72734810 None:intergenic
GACATCGAGTACGAAGCCAA+TGG 0.658048 3_3:+72733873 Msa0470610:CDS
GATGGACGACGATGAAATGG+AGG 0.660755 3_3:+72733827 Msa0470610:CDS
CGGTCCCGATGACTACGAGA+TGG 0.674729 3_3:+72733809 Msa0470610:CDS
TGATGTTTATGATTTCAGAG+AGG 0.674907 3_3:+72734055 Msa0470610:CDS
ATCCTCTGTATAAATCTGAG+AGG 0.681896 3_3:+72734831 Msa0470610:CDS
TCTCGACGTGCATCAACAGG+GGG 0.706751 3_3:-72734809 None:intergenic
GAAAGAGGTGGTAGTGACGG+TGG 0.730248 3_3:-72733663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTTTAAAAATATATCA+TGG - chr3_3:72736320-72736339 None:intergenic 10.0%
!!! AATTCAAATTTAAAATGCAA+TGG - chr3_3:72734879-72734898 None:intergenic 15.0%
!! TAGATTGTGATTTCTTTATT+CGG + chr3_3:72734012-72734031 Msa0470610:CDS 20.0%
!! AAATCATAAACATCATTATC+AGG - chr3_3:72734050-72734069 None:intergenic 20.0%
!!! AAGATAAAATTTACCTTTTG+AGG - chr3_3:72734223-72734242 None:intergenic 20.0%
!!! AAGGTCTTATTGTATAATAT+TGG + chr3_3:72734548-72734567 Msa0470610:intron 20.0%
!!! TATTTATATTGATTGTGCTA+GGG + chr3_3:72734658-72734677 Msa0470610:intron 20.0%
!! TATATCAGTTCCAAATTTAA+TGG + chr3_3:72734706-72734725 Msa0470610:intron 20.0%
!! TGAAAATCTGTGATATAAAA+TGG + chr3_3:72734960-72734979 Msa0470610:intron 20.0%
!! ATAAAATGGATAGTTATCAA+AGG + chr3_3:72734974-72734993 Msa0470610:intron 20.0%
!!! TTTTTCATAGAAAAAGTTAC+CGG + chr3_3:72735214-72735233 Msa0470610:intron 20.0%
!!! ACAATAAAACCAACTTTTAT+TGG + chr3_3:72735361-72735380 Msa0470610:intron 20.0%
!!! TTCTTTAAAACATTATCAGT+AGG - chr3_3:72735753-72735772 None:intergenic 20.0%
!! CTCATTCAAAATAATACATA+TGG + chr3_3:72736733-72736752 Msa0470610:intron 20.0%
!! AAATTAATAACAAGTGATTC+AGG - chr3_3:72736770-72736789 None:intergenic 20.0%
!!! CACTAATCGAAGTTTTTTTT+TGG - chr3_3:72733532-72733551 None:intergenic 25.0%
! AAAAAAAACTTCGATTAGTG+CGG + chr3_3:72733532-72733551 Msa0470610:five_prime_UTR 25.0%
!!! TATAATCAACAAGAGTATCA+GGG - chr3_3:72733956-72733975 None:intergenic 25.0%
! AGAGATAAGTTTAATCCAAA+GGG - chr3_3:72734090-72734109 None:intergenic 25.0%
! AAGAGATAAGTTTAATCCAA+AGG - chr3_3:72734091-72734110 None:intergenic 25.0%
! ATTGAATAAACATCTGTATC+AGG - chr3_3:72734178-72734197 None:intergenic 25.0%
! CATAAGTTAAAAACAGCATA+TGG - chr3_3:72734394-72734413 None:intergenic 25.0%
! ATTCAAAGCAACAACTATTT+GGG - chr3_3:72734631-72734650 None:intergenic 25.0%
! TATTCAAAGCAACAACTATT+TGG - chr3_3:72734632-72734651 None:intergenic 25.0%
!! GTATTTATATTGATTGTGCT+AGG + chr3_3:72734657-72734676 Msa0470610:intron 25.0%
!! ATTTATATTGATTGTGCTAG+GGG + chr3_3:72734659-72734678 Msa0470610:intron 25.0%
! TAATGTACTACATACAGATT+CGG - chr3_3:72734748-72734767 None:intergenic 25.0%
!!! GTTTTATTTTTCACACTTCT+AGG + chr3_3:72735135-72735154 Msa0470610:intron 25.0%
!! TTTTCATAGAAAAAGTTACC+GGG + chr3_3:72735215-72735234 Msa0470610:intron 25.0%
! TGACAAAACACTACAAAAAT+CGG + chr3_3:72735409-72735428 Msa0470610:CDS 25.0%
! TGTACAAACATTAAAACAGA+AGG - chr3_3:72735620-72735639 None:intergenic 25.0%
! AGATTGTTAAACTTAAGCAA+CGG - chr3_3:72735685-72735704 None:intergenic 25.0%
! AAAACATTATCAGTAGGTAA+TGG - chr3_3:72735747-72735766 None:intergenic 25.0%
!! AAATTTGAGTTAACTCACTT+AGG + chr3_3:72735846-72735865 Msa0470610:intron 25.0%
!! GAAAGAGTTTGTTTAAACTA+GGG + chr3_3:72735868-72735887 Msa0470610:intron 25.0%
!!! TTGTTATTTTAGACATGTAC+GGG - chr3_3:72735941-72735960 None:intergenic 25.0%
!!! GTTGTTATTTTAGACATGTA+CGG - chr3_3:72735942-72735961 None:intergenic 25.0%
!! GTACATGTCTAAAATAACAA+CGG + chr3_3:72735941-72735960 Msa0470610:intron 25.0%
! CATGATTCGAAATAGATAAA+CGG - chr3_3:72736214-72736233 None:intergenic 25.0%
! TTATCTATTTCGAATCATGA+TGG + chr3_3:72736215-72736234 Msa0470610:intron 25.0%
!! TTTTCACTCTGCATATAAAA+TGG - chr3_3:72736814-72736833 None:intergenic 25.0%
! CTTAAAATACATTCAACTGT+AGG - chr3_3:72737144-72737163 None:intergenic 25.0%
!!! GTTGAATGTATTTTAAGTCA+AGG + chr3_3:72737147-72737166 Msa0470610:three_prime_UTR 25.0%
! TTTATTCAGTGAAAATGAAC+CGG - chr3_3:72737266-72737285 None:intergenic 25.0%
TTACACGCTATAATTGAAGT+TGG - chr3_3:72733509-72733528 None:intergenic 30.0%
!! CTATAATCAACAAGAGTATC+AGG - chr3_3:72733957-72733976 None:intergenic 30.0%
TAAACATCATTATCAGGATC+AGG - chr3_3:72734044-72734063 None:intergenic 30.0%
TGATGTTTATGATTTCAGAG+AGG + chr3_3:72734055-72734074 Msa0470610:CDS 30.0%
AGATGTTTATTCAATTCCCA+AGG + chr3_3:72734183-72734202 Msa0470610:CDS 30.0%
!!! AAATTTACCTTTTGAGGCAT+TGG - chr3_3:72734217-72734236 None:intergenic 30.0%
TTTGAGAAAGCTTATGGAAA+CGG + chr3_3:72734356-72734375 Msa0470610:intron 30.0%
ACAAGAGACATAATAAAGTC+AGG - chr3_3:72734446-72734465 None:intergenic 30.0%
TTATACAATAAGACCTTGCT+CGG - chr3_3:72734545-72734564 None:intergenic 30.0%
TTGGTATCTTATCATGATGT+TGG + chr3_3:72734567-72734586 Msa0470610:intron 30.0%
TGGTATCTTATCATGATGTT+GGG + chr3_3:72734568-72734587 Msa0470610:intron 30.0%
TTCAAAGCAACAACTATTTG+GGG - chr3_3:72734630-72734649 None:intergenic 30.0%
! TTTATATTGATTGTGCTAGG+GGG + chr3_3:72734660-72734679 Msa0470610:intron 30.0%
GTTACTGAACAATCTTCTTA+TGG + chr3_3:72735084-72735103 Msa0470610:intron 30.0%
!!! TTTTTCACACTTCTAGGATA+AGG + chr3_3:72735141-72735160 Msa0470610:intron 30.0%
! GATAAGGAATGTGATGTTTT+AGG + chr3_3:72735157-72735176 Msa0470610:intron 30.0%
!!! CCAAAAAGACTCTTATTTTC+TGG - chr3_3:72735254-72735273 None:intergenic 30.0%
! CCAGAAAATAAGAGTCTTTT+TGG + chr3_3:72735251-72735270 Msa0470610:intron 30.0%
AGAAGCAAAGTGAAAACAAT+GGG - chr3_3:72735320-72735339 None:intergenic 30.0%
! TCTGGTAATAGACTTAGTTT+TGG - chr3_3:72735490-72735509 None:intergenic 30.0%
TAAAACAGAAGGCAAATTCA+AGG - chr3_3:72735609-72735628 None:intergenic 30.0%
TAGAATGTTAGTTGAAATCC+TGG + chr3_3:72735715-72735734 Msa0470610:intron 30.0%
AAGAAATAAAACACTCTGCA+TGG + chr3_3:72735768-72735787 Msa0470610:intron 30.0%
! ATTTTACAAGTGTACAACTC+TGG + chr3_3:72735819-72735838 Msa0470610:intron 30.0%
! GGAAAGAGTTTGTTTAAACT+AGG + chr3_3:72735867-72735886 Msa0470610:intron 30.0%
! TCATTCAGCTGTTGTATTTT+GGG - chr3_3:72735985-72736004 None:intergenic 30.0%
! TTCATTCAGCTGTTGTATTT+TGG - chr3_3:72735986-72736005 None:intergenic 30.0%
AATACAACAGCTGAATGAAA+AGG + chr3_3:72735987-72736006 Msa0470610:intron 30.0%
TCATTTACCTCATTGATAGA+TGG - chr3_3:72736088-72736107 None:intergenic 30.0%
GTTTAATATTGAGAGCTATG+TGG - chr3_3:72736129-72736148 None:intergenic 30.0%
GATTCACAAATCACAAGATA+GGG - chr3_3:72736192-72736211 None:intergenic 30.0%
TATTTCGAATCATGATGGTT+TGG + chr3_3:72736220-72736239 Msa0470610:intron 30.0%
ATTTCGAATCATGATGGTTT+GGG + chr3_3:72736221-72736240 Msa0470610:intron 30.0%
! AAAGAGTTAAAGTCTTGTAC+TGG - chr3_3:72736537-72736556 None:intergenic 30.0%
!!! GGAGTTGATATTGTTCTTTT+AGG + chr3_3:72736574-72736593 Msa0470610:intron 30.0%
CATATAAAATGGCATATCAG+AGG - chr3_3:72736803-72736822 None:intergenic 30.0%
TGCACACAAATGTCAAAAAT+GGG - chr3_3:72737050-72737069 None:intergenic 30.0%
TTGCACACAAATGTCAAAAA+TGG - chr3_3:72737051-72737070 None:intergenic 30.0%
!! GTTGTAATTTGTTAGAGATG+CGG + chr3_3:72737094-72737113 Msa0470610:three_prime_UTR 30.0%
CAATGAGAACAAATATAACC+CGG + chr3_3:72737244-72737263 Msa0470610:three_prime_UTR 30.0%
TTATTCAGTGAAAATGAACC+GGG - chr3_3:72737265-72737284 None:intergenic 30.0%
AAAAGCAGTGAAGTTGAAGT+AGG - chr3_3:72733586-72733605 None:intergenic 35.0%
! TTTGAGTTTGAAAGAAGAGG+AGG - chr3_3:72733709-72733728 None:intergenic 35.0%
! AGGTTTGAGTTTGAAAGAAG+AGG - chr3_3:72733712-72733731 None:intergenic 35.0%
GAATAAACATCTGTATCAGG+AGG - chr3_3:72734175-72734194 None:intergenic 35.0%
ACACTTGTGACACTTAGTTA+TGG + chr3_3:72734278-72734297 Msa0470610:intron 35.0%
ACACTTAGTTATGGCATGTT+TGG + chr3_3:72734287-72734306 Msa0470610:intron 35.0%
ACACTGTTTGAGAAAGCTTA+TGG + chr3_3:72734350-72734369 Msa0470610:intron 35.0%
GGTATCTTATCATGATGTTG+GGG + chr3_3:72734569-72734588 Msa0470610:intron 35.0%
GTATCTTATCATGATGTTGG+GGG + chr3_3:72734570-72734589 Msa0470610:intron 35.0%
TATCTTATCATGATGTTGGG+GGG + chr3_3:72734571-72734590 Msa0470610:intron 35.0%
TCAAAGCAACAACTATTTGG+GGG - chr3_3:72734629-72734648 None:intergenic 35.0%
CAGAAAGCAGCCATTAAATT+TGG - chr3_3:72734719-72734738 None:intergenic 35.0%
ATCCTCTGTATAAATCTGAG+AGG + chr3_3:72734831-72734850 Msa0470610:CDS 35.0%
TCCTCTGTATAAATCTGAGA+GGG + chr3_3:72734832-72734851 Msa0470610:CDS 35.0%
ACAAAGCTGTAAAGAAACAC+GGG - chr3_3:72734902-72734921 None:intergenic 35.0%
GACAAAGCTGTAAAGAAACA+CGG - chr3_3:72734903-72734922 None:intergenic 35.0%
TCTTCTTATGGAATCTTACC+AGG + chr3_3:72735096-72735115 Msa0470610:intron 35.0%
GAAGCAAAGTGAAAACAATG+GGG - chr3_3:72735319-72735338 None:intergenic 35.0%
CAGAAGCAAAGTGAAAACAA+TGG - chr3_3:72735321-72735340 None:intergenic 35.0%
GACAGGAAACCAATAAAAGT+TGG - chr3_3:72735373-72735392 None:intergenic 35.0%
AAGAATACCTGTAATGTGAC+AGG - chr3_3:72735390-72735409 None:intergenic 35.0%
CAAAACACTACAAAAATCGG+AGG + chr3_3:72735412-72735431 Msa0470610:CDS 35.0%
CATAAATCTCCTCAAAATCC+AGG - chr3_3:72735458-72735477 None:intergenic 35.0%
CTGTTAGTTAATTCTCAGTC+TGG + chr3_3:72735530-72735549 Msa0470610:intron 35.0%
! GCTGAAAGTATGACTATGAA+AGG - chr3_3:72735587-72735606 None:intergenic 35.0%
!! AGTAGGTAATGGTATTTTCC+AGG - chr3_3:72735736-72735755 None:intergenic 35.0%
!! AGTGGAGTGCTAAAATTTTG+AGG - chr3_3:72736031-72736050 None:intergenic 35.0%
TACCTCATTGATAGATGGAT+GGG - chr3_3:72736083-72736102 None:intergenic 35.0%
TTACCTCATTGATAGATGGA+TGG - chr3_3:72736084-72736103 None:intergenic 35.0%
GGATTCACAAATCACAAGAT+AGG - chr3_3:72736193-72736212 None:intergenic 35.0%
! ATCACTCTAGCTGACTTTAT+TGG + chr3_3:72736418-72736437 Msa0470610:intron 35.0%
! TTAGGTGCAACTTTGTTTGT+TGG + chr3_3:72736592-72736611 Msa0470610:intron 35.0%
! TAGGTGCAACTTTGTTTGTT+GGG + chr3_3:72736593-72736612 Msa0470610:intron 35.0%
! TTGTTTGTTGGGTCTTTGAT+TGG + chr3_3:72736604-72736623 Msa0470610:intron 35.0%
TTGCTTGTGATAGCTGATAA+GGG + chr3_3:72736707-72736726 Msa0470610:intron 35.0%
GAGATTTCAGCACTTCAAAT+TGG + chr3_3:72736914-72736933 Msa0470610:CDS 35.0%
ACACAAATGTCAAAAATGGG+AGG - chr3_3:72737047-72737066 None:intergenic 35.0%
TTGAAAGAAGAGGAGGATGA+GGG - chr3_3:72733702-72733721 None:intergenic 40.0%
TTTGAAAGAAGAGGAGGATG+AGG - chr3_3:72733703-72733722 None:intergenic 40.0%
ACATCATTATCAGGATCAGG+AGG - chr3_3:72734041-72734060 None:intergenic 40.0%
AAAGCTTATGGAAACGGCTT+AGG + chr3_3:72734362-72734381 Msa0470610:intron 40.0%
TTATGTTGTTCATCCGAGCA+AGG + chr3_3:72734529-72734548 Msa0470610:intron 40.0%
CAAAGCAACAACTATTTGGG+GGG - chr3_3:72734628-72734647 None:intergenic 40.0%
TCCCTCTCAGATTTATACAG+AGG - chr3_3:72734836-72734855 None:intergenic 40.0%
TCTGGCAAATCAATGATACC+CGG - chr3_3:72735236-72735255 None:intergenic 40.0%
TTGGTTTCCTGTCACATTAC+AGG + chr3_3:72735380-72735399 Msa0470610:intron 40.0%
CAAAATCCAGGACAAACTCA+GGG - chr3_3:72735446-72735465 None:intergenic 40.0%
TCAAAATCCAGGACAAACTC+AGG - chr3_3:72735447-72735466 None:intergenic 40.0%
! TGAGTTTGTCCTGGATTTTG+AGG + chr3_3:72735446-72735465 Msa0470610:CDS 40.0%
TATTACCAGAGCCAAAGTTC+TGG + chr3_3:72735500-72735519 Msa0470610:CDS 40.0%
ACAGTTCCTTACCAGAACTT+TGG - chr3_3:72735514-72735533 None:intergenic 40.0%
CGTGCTAGACAATGAATTCA+TGG + chr3_3:72735651-72735670 Msa0470610:intron 40.0%
ATAGATGGATGGGTCATGTT+GGG - chr3_3:72736073-72736092 None:intergenic 40.0%
!! TGAGTTTTGTGTGCTGAGTT+GGG + chr3_3:72736165-72736184 Msa0470610:intron 40.0%
TCGTGGAATATTTGCAGACT+CGG - chr3_3:72736370-72736389 None:intergenic 40.0%
ATCATCAATACGCCTTCTGT+AGG + chr3_3:72736643-72736662 Msa0470610:intron 40.0%
CTTGCTTGTGATAGCTGATA+AGG + chr3_3:72736706-72736725 Msa0470610:intron 40.0%
TGCTTGTGATAGCTGATAAG+GGG + chr3_3:72736708-72736727 Msa0470610:intron 40.0%
CGTCTTTCTATGACAGTTGT+TGG - chr3_3:72736844-72736863 None:intergenic 40.0%
TGTCATAGAAAGACGAGAGT+GGG + chr3_3:72736849-72736868 Msa0470610:CDS 40.0%
CTCCATTTCTTCTCTGGATT+GGG - chr3_3:72736875-72736894 None:intergenic 40.0%
TCTCCATTTCTTCTCTGGAT+TGG - chr3_3:72736876-72736895 None:intergenic 40.0%
ATGTCTCTCCATTTCTTCTC+TGG - chr3_3:72736881-72736900 None:intergenic 40.0%
ATGATTGTGCCAAGCATGAT+AGG + chr3_3:72736972-72736991 Msa0470610:three_prime_UTR 40.0%
ATGGAACTACCTATCATGCT+TGG - chr3_3:72736984-72737003 None:intergenic 40.0%
GCAGTGAAGTTGAAGTAGGA+GGG - chr3_3:72733582-72733601 None:intergenic 45.0%
AGCAGTGAAGTTGAAGTAGG+AGG - chr3_3:72733583-72733602 None:intergenic 45.0%
TATGAGCTTCGTTTCTACGC+AGG + chr3_3:72733923-72733942 Msa0470610:CDS 45.0%
ATGAGCTTCGTTTCTACGCA+GGG + chr3_3:72733924-72733943 Msa0470610:CDS 45.0%
! GAGAGGTTTGTTCTACCCTT+TGG + chr3_3:72734072-72734091 Msa0470610:intron 45.0%
TCTTGCACCAATGCCTCAAA+AGG + chr3_3:72734207-72734226 Msa0470610:CDS 45.0%
! AGATGCGCGCAAAGTGATTT+TGG + chr3_3:72734767-72734786 Msa0470610:CDS 45.0%
ATCTGAGAGGGAAGTTGAGA+AGG + chr3_3:72734844-72734863 Msa0470610:CDS 45.0%
AGAGGGAAGTTGAGAAGGTA+TGG + chr3_3:72734849-72734868 Msa0470610:intron 45.0%
! GAGGGAAGTTGAGAAGGTAT+GGG + chr3_3:72734850-72734869 Msa0470610:intron 45.0%
ACTCAAGAAAGCTCATTGCC+TGG - chr3_3:72735117-72735136 None:intergenic 45.0%
ACACTACAAAAATCGGAGGC+TGG + chr3_3:72735416-72735435 Msa0470610:CDS 45.0%
CACTACAAAAATCGGAGGCT+GGG + chr3_3:72735417-72735436 Msa0470610:CDS 45.0%
TCTCAGATGCATCTATGGAG+TGG - chr3_3:72736049-72736068 None:intergenic 45.0%
TGGGATCTCAGATGCATCTA+TGG - chr3_3:72736054-72736073 None:intergenic 45.0%
GATAGATGGATGGGTCATGT+TGG - chr3_3:72736074-72736093 None:intergenic 45.0%
GACCCATCCATCTATCAATG+AGG + chr3_3:72736078-72736097 Msa0470610:intron 45.0%
!! GTGAGTTTTGTGTGCTGAGT+TGG + chr3_3:72736164-72736183 Msa0470610:intron 45.0%
TCTTTCACAACACCTCTGCA+TGG + chr3_3:72736552-72736571 Msa0470610:intron 45.0%
CTTTCACAACACCTCTGCAT+GGG + chr3_3:72736553-72736572 Msa0470610:intron 45.0%
CAATATCAACTCCCATGCAG+AGG - chr3_3:72736567-72736586 None:intergenic 45.0%
CTGTCATAGAAAGACGAGAG+TGG + chr3_3:72736848-72736867 Msa0470610:CDS 45.0%
TCATGCTTGGCACAATCATG+AGG - chr3_3:72736971-72736990 None:intergenic 45.0%
CACACATGTGACGTGTTAGA+TGG - chr3_3:72737003-72737022 None:intergenic 45.0%
CACGTCACATGTGTGTATAC+CGG + chr3_3:72737008-72737027 Msa0470610:three_prime_UTR 45.0%
GGGAGGTTGAGTTTAATTGC+CGG - chr3_3:72737030-72737049 None:intergenic 45.0%
GACATTTGTGTGCAAGTTGC+TGG + chr3_3:72737056-72737075 Msa0470610:three_prime_UTR 45.0%
! CTGGAAAGAGGTGGTAGTGA+CGG - chr3_3:72733669-72733688 None:intergenic 50.0%
!! TGTGGAGTTCTGGAAAGAGG+TGG - chr3_3:72733678-72733697 None:intergenic 50.0%
!! GGTTGTGGAGTTCTGGAAAG+AGG - chr3_3:72733681-72733700 None:intergenic 50.0%
GTTGGAGATTGGAGGATGAG+AGG - chr3_3:72733732-72733751 None:intergenic 50.0%
TCCAATCTCCAACCACCACT+CGG + chr3_3:72733739-72733758 Msa0470610:CDS 50.0%
TCGTCCATCTCGTAGTCATC+GGG - chr3_3:72733816-72733835 None:intergenic 50.0%
GTCGTCCATCTCGTAGTCAT+CGG - chr3_3:72733817-72733836 None:intergenic 50.0%
CGAGATGGACGACGATGAAA+TGG + chr3_3:72733824-72733843 Msa0470610:CDS 50.0%
GATGGACGACGATGAAATGG+AGG + chr3_3:72733827-72733846 Msa0470610:CDS 50.0%
GACATCGAGTACGAAGCCAA+TGG + chr3_3:72733873-72733892 Msa0470610:CDS 50.0%
CGCAATGTCAACATCGCCAT+TGG - chr3_3:72733892-72733911 None:intergenic 50.0%
TGGCGATGTTGACATTGCGA+CGG + chr3_3:72733893-72733912 Msa0470610:CDS 50.0%
TGAGCTTCGTTTCTACGCAG+GGG + chr3_3:72733925-72733944 Msa0470610:CDS 50.0%
!! GGCATTGGTGCAAGAACCTT+GGG - chr3_3:72734202-72734221 None:intergenic 50.0%
!! AGGCATTGGTGCAAGAACCT+TGG - chr3_3:72734203-72734222 None:intergenic 50.0%
ATCTCGACGTGCATCAACAG+GGG - chr3_3:72734813-72734832 None:intergenic 50.0%
GATCTCGACGTGCATCAACA+GGG - chr3_3:72734814-72734833 None:intergenic 50.0%
! CCTTACCAGAACTTTGGCTC+TGG - chr3_3:72735508-72735527 None:intergenic 50.0%
! CCAGAGCCAAAGTTCTGGTA+AGG + chr3_3:72735505-72735524 Msa0470610:intron 50.0%
AGGGTAGACTTGCAAGTTCG+AGG + chr3_3:72735887-72735906 Msa0470610:intron 50.0%
CGAGAGTCTATGTGAACTCG+TGG - chr3_3:72736387-72736406 None:intergenic 50.0%
TCCACACACAGATGGGAAGA+GGG - chr3_3:72736500-72736519 None:intergenic 50.0%
TCTTCCCATCTGTGTGTGGA+GGG + chr3_3:72736500-72736519 Msa0470610:intron 50.0%
AGATCCCTCCACACACAGAT+GGG - chr3_3:72736507-72736526 None:intergenic 50.0%
CTGGAGCTGTTACCTACAGA+AGG - chr3_3:72736658-72736677 None:intergenic 50.0%
CTTCTGTAGGTAACAGCTCC+AGG + chr3_3:72736656-72736675 Msa0470610:intron 50.0%
TGTAGGTAACAGCTCCAGGA+GGG + chr3_3:72736660-72736679 Msa0470610:intron 50.0%
!! CTATCTCTAGTTCTCCCTCC+TGG - chr3_3:72736677-72736696 None:intergenic 50.0%
GGCCCAATCCAGAGAAGAAA+TGG + chr3_3:72736870-72736889 Msa0470610:CDS 50.0%
CAACTGTAGGTCACTGTCAC+TGG - chr3_3:72737131-72737150 None:intergenic 50.0%
!! GAGGAAGGAGGTGGTGGAAA+TGG - chr3_3:72733634-72733653 None:intergenic 55.0%
TGAGAGGAAGAGGAAGGAGG+TGG - chr3_3:72733643-72733662 None:intergenic 55.0%
TGGTGAGAGGAAGAGGAAGG+AGG - chr3_3:72733646-72733665 None:intergenic 55.0%
! GAAAGAGGTGGTAGTGACGG+TGG - chr3_3:72733666-72733685 None:intergenic 55.0%
GGATGAGGGTTGTGGAGTTC+TGG - chr3_3:72733688-72733707 None:intergenic 55.0%
GAAGAGGAGGATGAGGGTTG+TGG - chr3_3:72733696-72733715 None:intergenic 55.0%
GAGTGGTGGTTGGAGATTGG+AGG - chr3_3:72733740-72733759 None:intergenic 55.0%
AGATTCGACGTCGCCATCGT+CGG - chr3_3:72733787-72733806 None:intergenic 55.0%
CATCTCGTAGTCATCGGGAC+CGG - chr3_3:72733811-72733830 None:intergenic 55.0%
GGACGACGATGAAATGGAGG+AGG + chr3_3:72733830-72733849 Msa0470610:CDS 55.0%
CTTCGTTTCTACGCAGGGGT+GGG + chr3_3:72733929-72733948 Msa0470610:CDS 55.0%
TCTCGACGTGCATCAACAGG+GGG - chr3_3:72734812-72734831 None:intergenic 55.0%
GGATCTCGACGTGCATCAAC+AGG - chr3_3:72734815-72734834 None:intergenic 55.0%
TCCCTCTTCCCATCTGTGTG+TGG + chr3_3:72736496-72736515 Msa0470610:intron 55.0%
CTCCACACACAGATGGGAAG+AGG - chr3_3:72736501-72736520 None:intergenic 55.0%
CTCTTCCCATCTGTGTGTGG+AGG + chr3_3:72736499-72736518 Msa0470610:intron 55.0%
CAGATCCCTCCACACACAGA+TGG - chr3_3:72736508-72736527 None:intergenic 55.0%
CATCTGTGTGTGGAGGGATC+TGG + chr3_3:72736506-72736525 Msa0470610:intron 55.0%
CTGTAGGTAACAGCTCCAGG+AGG + chr3_3:72736659-72736678 Msa0470610:intron 55.0%
GAGGAAGAGGAAGGAGGTGG+TGG - chr3_3:72733640-72733659 None:intergenic 60.0%
CGGTGGTGAGAGGAAGAGGA+AGG - chr3_3:72733649-72733668 None:intergenic 60.0%
GTGACGGTGGTGAGAGGAAG+AGG - chr3_3:72733653-72733672 None:intergenic 60.0%
! GTGGTAGTGACGGTGGTGAG+AGG - chr3_3:72733659-72733678 None:intergenic 60.0%
GCCGAGTGGTGGTTGGAGAT+TGG - chr3_3:72733743-72733762 None:intergenic 60.0%
!! CAAGAATGGGTTGCGCCGAG+TGG - chr3_3:72733757-72733776 None:intergenic 60.0%
CGTCGGCACGGGTCAAGAAT+GGG - chr3_3:72733770-72733789 None:intergenic 60.0%
TCGTCGGCACGGGTCAAGAA+TGG - chr3_3:72733771-72733790 None:intergenic 60.0%
! TTCTTGACCCGTGCCGACGA+TGG + chr3_3:72733771-72733790 Msa0470610:CDS 60.0%
GATGGCGACGTCGAATCTGC+CGG + chr3_3:72733789-72733808 Msa0470610:CDS 60.0%
CGGTCCCGATGACTACGAGA+TGG + chr3_3:72733809-72733828 Msa0470610:CDS 60.0%
GCTTCGTTTCTACGCAGGGG+TGG + chr3_3:72733928-72733947 Msa0470610:CDS 60.0%
GGGAGACCCTGAGTTTGTCC+TGG + chr3_3:72735437-72735456 Msa0470610:CDS 60.0%
!! GAATGGGTTGCGCCGAGTGG+TGG - chr3_3:72733754-72733773 None:intergenic 65.0%
GGGTTGCGCCGAGTGGTGGT+TGG - chr3_3:72733750-72733769 None:intergenic 70.0%
GACGTCGCCATCGTCGGCAC+GGG - chr3_3:72733781-72733800 None:intergenic 70.0%
CGACGTCGCCATCGTCGGCA+CGG - chr3_3:72733782-72733801 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72733504 72737285 72733504 ID=Msa0470610;Name=Msa0470610
chr3_3 mRNA 72733504 72737285 72733504 ID=Msa0470610-mRNA-1;Parent=Msa0470610;Name=Msa0470610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=111|0.75|1|1|1|1|5|343|290
chr3_3 exon 72733504 72734076 72733504 ID=Msa0470610-mRNA-1:exon:18244;Parent=Msa0470610-mRNA-1
chr3_3 exon 72734160 72734228 72734160 ID=Msa0470610-mRNA-1:exon:18245;Parent=Msa0470610-mRNA-1
chr3_3 exon 72734761 72734865 72734761 ID=Msa0470610-mRNA-1:exon:18246;Parent=Msa0470610-mRNA-1
chr3_3 exon 72735402 72735521 72735402 ID=Msa0470610-mRNA-1:exon:18247;Parent=Msa0470610-mRNA-1
chr3_3 exon 72736826 72737285 72736826 ID=Msa0470610-mRNA-1:exon:18248;Parent=Msa0470610-mRNA-1
chr3_3 five_prime_UTR 72733504 72733614 72733504 ID=Msa0470610-mRNA-1:five_prime_utr;Parent=Msa0470610-mRNA-1
chr3_3 CDS 72733615 72734076 72733615 ID=Msa0470610-mRNA-1:cds;Parent=Msa0470610-mRNA-1
chr3_3 CDS 72734160 72734228 72734160 ID=Msa0470610-mRNA-1:cds;Parent=Msa0470610-mRNA-1
chr3_3 CDS 72734761 72734865 72734761 ID=Msa0470610-mRNA-1:cds;Parent=Msa0470610-mRNA-1
chr3_3 CDS 72735402 72735521 72735402 ID=Msa0470610-mRNA-1:cds;Parent=Msa0470610-mRNA-1
chr3_3 CDS 72736826 72736942 72736826 ID=Msa0470610-mRNA-1:cds;Parent=Msa0470610-mRNA-1
chr3_3 three_prime_UTR 72736943 72737285 72736943 ID=Msa0470610-mRNA-1:three_prime_utr;Parent=Msa0470610-mRNA-1
Gene Sequence

>Msa0470610

ATGAAAGCAGCTATGTCCATTTCCACCACCTCCTTCCTCTTCCTCTCACCACCGTCACTACCACCTCTTTCCAGAACTCCACAACCCTCATCCTCCTCTTCTTTCAAACTCAAACCTCTCATCCTCCAATCTCCAACCACCACTCGGCGCAACCCATTCTTGACCCGTGCCGACGATGGCGACGTCGAATCTGCCGGTCCCGATGACTACGAGATGGACGACGATGAAATGGAGGAGGTTGACAACAAAAAAGACTTCGACATCGAGTACGAAGCCAATGGCGATGTTGACATTGCGACGGCGCAGAGTATGAGCTTCGTTTCTACGCAGGGGTGGGACCCTGATACTCTTGTTGATTATAGAATTAACGAAGATGAGTTTCATAAGATTAGTTTGTTAGATTGTGATTTCTTTATTCGGAAACCTCCTGATCCTGATAATGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCTGATACAGATGTTTATTCAATTCCCAAGGTTCTTGCACCAATGCCTCAAAAGTACATTAGATGCGCGCAAAGTGATTTTGGATGCGACAATGTTACAGAGCCCCCTGTTGATGCACGTCGAGATCCTCTGTATAAATCTGAGAGGGAAGTTGAGAAGGTATTCTTGACAAAACACTACAAAAATCGGAGGCTGGGAGACCCTGAGTTTGTCCTGGATTTTGAGGAGATTTATGTTATTGATTCCAAAACTAAGTCTATTACCAGAGCCAAAGTTCTGAGTGAAAAAGATGATCCAACAACTGTCATAGAAAGACGAGAGTGGGCCCAATCCAGAGAAGAAATGGAGAGACATCTAAGAAAGCTAAGAGATTTCAGCACTTCAAATTGGTTTTGA

Protein sequence

>Msa0470610

MKAAMSISTTSFLFLSPPSLPPLSRTPQPSSSSSFKLKPLILQSPTTTRRNPFLTRADDGDVESAGPDDYEMDDDEMEEVDNKKDFDIEYEANGDVDIATAQSMSFVSTQGWDPDTLVDYRINEDEFHKISLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQKYIRCAQSDFGCDNVTEPPVDARRDPLYKSEREVEKVFLTKHYKNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVLSEKDDPTTVIERREWAQSREEMERHLRKLRDFSTSNWF*