AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036830 MtrunA17_Chr1g0193391 97.213 610 13 1 1 610 1 606 0.0 1220
Msa0036830 MtrunA17_Chr7g0271221 81.597 576 103 3 1 575 1 574 0.0 973
Msa0036830 MtrunA17_Chr4g0069581 58.969 524 211 2 35 555 4 526 0.0 598
Msa0036830 MtrunA17_Chr3g0133341 47.461 571 263 8 11 564 10 560 0.0 541
Msa0036830 MtrunA17_Chr2g0284701 44.093 601 287 12 3 560 8 602 2.50e-165 485
Msa0036830 MtrunA17_Chr8g0379971 42.979 584 283 10 14 548 11 593 2.66e-148 441
Msa0036830 MtrunA17_Chr8g0379991 44.286 560 255 9 45 548 8 566 1.75e-142 425
Msa0036830 MtrunA17_Chr2g0276751 39.138 557 317 9 2 546 17 563 1.91e-140 421
Msa0036830 MtrunA17_Chr5g0415961 40.395 557 297 9 17 546 24 572 4.51e-140 419
Msa0036830 MtrunA17_Chr8g0362711 40.323 558 295 7 17 546 24 571 1.36e-136 410
Msa0036830 MtrunA17_Chr3g0142101 37.843 547 326 7 17 555 35 575 5.63e-128 388
Msa0036830 MtrunA17_Chr3g0142091 38.378 555 325 8 17 559 26 575 1.43e-125 382
Msa0036830 MtrunA17_Chr4g0005901 37.615 545 320 9 17 546 32 571 7.72e-121 370
Msa0036830 MtrunA17_Chr7g0241741 36.832 543 327 6 17 546 22 561 3.23e-120 368
Msa0036830 MtrunA17_Chr7g0214731 36.577 555 326 8 19 549 63 615 1.62e-116 360
Msa0036830 MtrunA17_Chr5g0422881 37.522 573 327 13 17 564 20 586 3.18e-116 358
Msa0036830 MtrunA17_Chr3g0104011 35.714 546 331 8 17 546 22 563 5.76e-116 357
Msa0036830 MtrunA17_Chr7g0240381 35.926 540 326 8 17 546 29 558 1.02e-115 357
Msa0036830 MtrunA17_Chr8g0375291 35.326 552 336 7 2 537 27 573 2.74e-115 355
Msa0036830 MtrunA17_Chr8g0375311 34.046 561 349 9 2 546 27 582 1.53e-113 351
Msa0036830 MtrunA17_Chr4g0008651 36.197 547 331 9 17 551 34 574 7.63e-112 347
Msa0036830 MtrunA17_Chr5g0399071 36.475 573 324 13 17 563 25 583 8.11e-112 347
Msa0036830 MtrunA17_Chr8g0375361 34.225 561 346 8 2 546 28 581 5.02e-111 345
Msa0036830 MtrunA17_Chr7g0261811 34.441 572 344 9 3 554 15 575 6.54e-110 342
Msa0036830 MtrunA17_Chr5g0399061 35.979 567 327 14 17 557 27 583 1.70e-109 340
Msa0036830 MtrunA17_Chr3g0112671 34.066 546 344 8 9 547 25 561 1.82e-108 338
Msa0036830 MtrunA17_Chr7g0261881 32.517 572 355 9 3 554 15 575 2.59e-107 335
Msa0036830 MtrunA17_Chr7g0261791 33.217 575 352 9 3 556 17 580 8.38e-105 329
Msa0036830 MtrunA17_Chr7g0261771 33.275 571 348 11 3 552 19 577 8.75e-105 329
Msa0036830 MtrunA17_Chr5g0439381 35.548 557 335 9 17 561 28 572 1.86e-104 328
Msa0036830 MtrunA17_Chr4g0056431 36.252 571 331 11 17 563 25 586 1.93e-104 328
Msa0036830 MtrunA17_Chr8g0375321 32.799 561 356 8 2 546 24 579 9.44e-104 325
Msa0036830 MtrunA17_Chr3g0114501 34.982 566 342 10 3 551 10 566 4.47e-103 324
Msa0036830 MtrunA17_Chr8g0375341 32.442 561 358 7 2 546 27 582 8.91e-103 323
Msa0036830 MtrunA17_Chr1g0166791 31.504 565 366 9 3 552 12 570 3.18e-102 322
Msa0036830 MtrunA17_Chr1g0213711 33.702 543 337 11 17 544 21 555 3.84e-102 322
Msa0036830 MtrunA17_Chr8g0375351 32.258 558 357 7 3 544 28 580 7.74e-102 321
Msa0036830 MtrunA17_Chr1g0187241 31.379 580 371 10 3 563 14 585 1.24e-101 320
Msa0036830 MtrunA17_Chr3g0112611 33.449 577 351 9 9 559 24 593 4.97e-101 319
Msa0036830 MtrunA17_Chr8g0375331 31.903 536 344 7 2 521 11 541 3.39e-100 316
Msa0036830 MtrunA17_Chr7g0255621 32.558 602 363 15 4 577 12 598 1.40e-98 313
Msa0036830 MtrunA17_Chr7g0261851 32.925 571 358 8 3 556 16 578 3.47e-98 311
Msa0036830 MtrunA17_Chr4g0063591 36.514 545 324 9 17 546 22 559 4.30e-98 311
Msa0036830 MtrunA17_Chr1g0166711 32.522 575 364 10 3 560 13 580 1.95e-97 310
Msa0036830 MtrunA17_Chr7g0255611 32.988 579 342 17 1 546 9 574 6.31e-97 308
Msa0036830 MtrunA17_Chr5g0400371 32.740 562 353 9 3 544 100 656 2.65e-96 309
Msa0036830 MtrunA17_Chr7g0217461 31.952 579 368 8 3 560 12 585 1.34e-95 305
Msa0036830 MtrunA17_Chr7g0214461 33.031 551 346 11 18 552 79 622 5.75e-95 304
Msa0036830 MtrunA17_Chr7g0255601 31.379 631 373 16 1 608 13 606 8.86e-94 300
Msa0036830 MtrunA17_Chr4g0054891 31.771 576 360 10 3 553 98 665 2.60e-93 301
Msa0036830 MtrunA17_Chr7g0261661 33.925 507 296 9 105 591 1 488 1.94e-92 293
Msa0036830 MtrunA17_Chr4g0059971 33.333 549 339 10 22 546 39 584 3.11e-92 296
Msa0036830 MtrunA17_Chr7g0218851 32.044 543 346 11 18 544 47 582 1.96e-91 294
Msa0036830 MtrunA17_Chr5g0415791 33.048 584 361 12 17 576 29 606 2.85e-91 294
Msa0036830 MtrunA17_Chr1g0166771 31.693 508 333 7 31 529 5 507 6.79e-90 288
Msa0036830 MtrunA17_Chr1g0166741 30.616 552 369 7 17 559 27 573 1.53e-89 288
Msa0036830 MtrunA17_Chr4g0011471 33.581 539 334 10 26 544 23 557 1.86e-89 288
Msa0036830 MtrunA17_Chr4g0059991 31.655 556 350 11 22 551 27 578 7.66e-88 285
Msa0036830 MtrunA17_Chr8g0353031 29.965 574 360 10 1 551 1 555 5.54e-85 276
Msa0036830 MtrunA17_Chr4g0059981 31.810 569 356 12 22 563 36 599 4.72e-84 275
Msa0036830 MtrunA17_Chr4g0014781 31.618 544 345 10 17 550 29 555 1.16e-83 272
Msa0036830 MtrunA17_Chr4g0014791 31.769 554 347 10 3 546 17 549 3.24e-83 271
Msa0036830 MtrunA17_Chr4g0014871 31.227 554 353 12 3 546 18 553 5.01e-83 271
Msa0036830 MtrunA17_Chr4g0014841 30.505 554 354 11 3 546 17 549 6.23e-82 268
Msa0036830 MtrunA17_Chr1g0166731 33.839 461 285 8 107 552 12 467 3.11e-81 263
Msa0036830 MtrunA17_Chr4g0014801 31.004 558 356 11 3 550 17 555 3.45e-81 266
Msa0036830 MtrunA17_Chr3g0077151 31.532 555 342 13 3 546 16 543 5.02e-81 265
Msa0036830 MtrunA17_Chr4g0060071 46.237 279 137 4 279 551 32 303 1.37e-80 256
Msa0036830 MtrunA17_Chr8g0390331 30.373 563 367 11 8 552 6 561 5.00e-80 263
Msa0036830 MtrunA17_Chr4g0060001 30.508 590 376 12 18 586 30 606 6.32e-80 264
Msa0036830 MtrunA17_Chr8g0362801 34.194 465 279 10 105 546 1 461 7.48e-79 257
Msa0036830 MtrunA17_Chr4g0011041 29.286 560 374 9 3 544 24 579 2.74e-78 259
Msa0036830 MtrunA17_Chr2g0331481 28.459 636 415 13 3 607 11 637 2.99e-77 258
Msa0036830 MtrunA17_Chr2g0331471 28.365 624 407 13 15 607 86 700 4.01e-77 259
Msa0036830 MtrunA17_Chr3g0082631 34.521 449 263 9 135 558 30 472 1.20e-76 251
Msa0036830 MtrunA17_Chr7g0234381 35.730 445 252 8 104 543 3 418 2.97e-76 249
Msa0036830 MtrunA17_Chr7g0234181 35.973 442 249 9 107 543 1 413 7.65e-76 247
Msa0036830 MtrunA17_Chr7g0240271 27.757 544 370 10 17 540 24 564 8.30e-76 253
Msa0036830 MtrunA17_Chr4g0003761 28.369 564 374 14 19 561 32 586 1.14e-75 252
Msa0036830 MtrunA17_Chr8g0362781 27.986 561 366 10 17 547 30 582 1.36e-74 249
Msa0036830 MtrunA17_Chr7g0234151 34.978 446 254 10 104 543 3 418 1.06e-73 242
Msa0036830 MtrunA17_Chr2g0331511 29.617 574 369 12 15 560 19 585 1.52e-73 248
Msa0036830 MtrunA17_Chr4g0014861 34.043 423 260 9 134 546 15 428 5.14e-73 241
Msa0036830 MtrunA17_Chr1g0157601 29.130 563 366 15 3 543 2 553 3.53e-72 242
Msa0036830 MtrunA17_Chr1g0147631 29.661 590 357 15 17 582 25 580 5.15e-72 242
Msa0036830 MtrunA17_Chr1g0157611 29.688 576 367 15 6 556 5 567 1.24e-71 241
Msa0036830 MtrunA17_Chr7g0240281 29.038 551 362 11 17 543 24 569 5.89e-70 237
Msa0036830 MtrunA17_Chr1g0177591 29.630 540 351 14 15 542 40 562 1.68e-68 233
Msa0036830 MtrunA17_Chr7g0261751 28.842 475 280 8 3 427 19 485 4.55e-68 230
Msa0036830 MtrunA17_Chr7g0235521 29.204 452 299 8 108 540 4 453 2.41e-66 224
Msa0036830 MtrunA17_Chr7g0240131 29.204 452 299 8 108 540 4 453 1.31e-65 222
Msa0036830 MtrunA17_Chr7g0240181 29.204 452 299 8 108 540 4 453 1.34e-65 222
Msa0036830 MtrunA17_Chr7g0240211 29.204 452 299 8 108 540 4 453 2.14e-65 222
Msa0036830 MtrunA17_Chr2g0331521 26.712 584 389 17 17 577 22 589 6.00e-63 218
Msa0036830 MtrunA17_Chr2g0331461 28.271 619 394 16 3 588 11 612 3.81e-62 217
Msa0036830 MtrunA17_Chr3g0142121 41.219 279 154 5 284 561 11 280 3.12e-60 202
Msa0036830 MtrunA17_Chr1g0157621 26.978 556 373 14 35 569 1 544 2.36e-58 205
Msa0036830 MtrunA17_Chr7g0240151 27.876 452 287 9 108 540 4 435 2.53e-58 202
Msa0036830 MtrunA17_Chr1g0177611 31.667 420 263 12 135 542 26 433 2.90e-58 202
Msa0036830 MtrunA17_Chr5g0415841 29.336 467 299 10 105 547 1 460 1.34e-56 198
Msa0036830 MtrunA17_Chr1g0177631 31.579 418 266 11 135 542 26 433 2.47e-56 196
Msa0036830 MtrunA17_Chr3g0112631 36.364 275 161 5 283 547 3 273 4.02e-56 191
Msa0036830 MtrunA17_Chr7g0261731 30.814 344 217 5 3 333 19 354 1.59e-55 192
Msa0036830 MtrunA17_Chr3g0142111 34.397 282 178 3 17 291 46 327 3.83e-54 187
Msa0036830 MtrunA17_Chr2g0326211 25.887 564 371 14 4 546 10 547 3.25e-53 191
Msa0036830 MtrunA17_Chr2g0325951 26.560 561 371 12 4 546 10 547 2.16e-52 188
Msa0036830 MtrunA17_Chr6g0451841 26.655 559 364 11 17 551 5 541 4.06e-51 184
Msa0036830 MtrunA17_Chr2g0325961 26.012 519 348 11 46 546 48 548 1.43e-50 183
Msa0036830 MtrunA17_Chr7g0261721 40.394 203 110 5 353 548 5 203 5.51e-37 137
Msa0036830 MtrunA17_Chr1g0147591 32.308 195 119 4 142 326 9 200 1.55e-26 107
Msa0036830 MtrunA17_Chr3g0112651 30.653 199 131 4 91 284 7 203 2.34e-25 104
Msa0036830 MtrunA17_Chr7g0261831 37.500 152 86 4 242 387 1 149 7.77e-25 102
Msa0036830 MtrunA17_Chr4g0060061 38.983 118 72 0 128 245 11 128 7.16e-23 94.7
Msa0036830 MtrunA17_Chr4g0060051 36.264 91 56 1 11 101 18 106 1.91e-15 73.2
Msa0036830 MtrunA17_Chr2g0326221 26.222 225 139 6 323 546 25 223 2.79e-15 75.5
Msa0036830 MtrunA17_Chr7g0234371 43.210 81 43 2 27 104 1 81 1.06e-12 63.9
Msa0036830 MtrunA17_Chr7g0234141 43.210 81 43 2 27 104 1 81 1.06e-12 63.9
Msa0036830 MtrunA17_Chr7g0234171 46.774 62 33 0 43 104 16 77 2.46e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036830 AT1G59740.1 41.519 566 309 11 5 553 23 583 7.58e-146 435
Msa0036830 AT1G69850.1 39.719 569 304 8 17 552 23 585 4.54e-141 422
Msa0036830 AT1G33440.1 41.336 554 312 7 19 563 38 587 2.38e-138 416
Msa0036830 AT1G27040.2 39.234 548 312 6 17 550 21 561 1.82e-133 402
Msa0036830 AT1G27040.1 39.234 548 312 6 17 550 25 565 2.25e-133 402
Msa0036830 AT1G27040.3 39.811 530 298 6 35 550 11 533 5.24e-130 392
Msa0036830 AT5G62730.1 37.300 563 295 7 17 549 54 588 1.98e-124 380
Msa0036830 AT5G62730.2 37.477 555 289 7 25 549 3 529 8.71e-123 374
Msa0036830 AT3G25280.1 39.394 528 290 10 19 543 21 521 1.74e-121 370
Msa0036830 AT3G54140.1 35.963 545 331 7 17 546 22 563 1.32e-120 369
Msa0036830 AT3G54140.2 35.963 545 331 7 17 546 22 563 1.32e-120 369
Msa0036830 AT5G01180.2 35.229 545 334 7 17 546 23 563 6.18e-118 362
Msa0036830 AT5G01180.3 35.229 545 334 7 17 546 23 563 6.18e-118 362
Msa0036830 AT5G01180.1 35.229 545 334 7 17 546 23 563 6.18e-118 362
Msa0036830 AT1G62200.1 36.654 532 313 7 17 532 50 573 3.00e-114 353
Msa0036830 AT3G25260.1 36.312 526 303 10 19 543 21 515 1.13e-113 349
Msa0036830 AT2G02040.1 34.909 550 339 7 17 550 39 585 1.75e-113 351
Msa0036830 AT5G13400.1 37.238 572 332 11 2 550 48 615 3.13e-113 352
Msa0036830 AT2G37900.1 35.065 539 335 7 17 547 36 567 1.80e-111 346
Msa0036830 AT1G62200.2 34.938 561 312 8 17 532 50 602 2.03e-108 339
Msa0036830 AT1G62200.3 34.938 561 312 8 17 532 64 616 2.56e-108 339
Msa0036830 AT2G26690.1 36.331 556 334 9 17 559 22 570 1.54e-106 333
Msa0036830 AT1G68570.1 37.411 564 325 12 18 558 22 580 5.98e-106 332
Msa0036830 AT2G26690.2 37.132 544 319 10 29 559 4 537 6.41e-106 330
Msa0036830 AT2G37900.2 36.382 492 298 7 71 554 11 495 8.30e-105 326
Msa0036830 AT2G26690.3 37.500 528 310 9 45 559 5 525 1.16e-104 327
Msa0036830 AT3G53960.1 33.577 548 345 8 14 547 32 574 1.76e-104 328
Msa0036830 AT1G12110.1 34.321 574 348 9 17 570 25 589 3.11e-104 327
Msa0036830 AT1G68570.2 37.409 548 318 11 31 558 8 550 5.76e-104 326
Msa0036830 AT1G69870.1 34.266 572 344 10 17 560 49 616 3.85e-102 323
Msa0036830 AT2G40460.1 34.110 601 352 13 3 587 10 582 6.97e-102 321
Msa0036830 AT3G21670.1 35.714 546 325 8 17 548 27 560 1.47e-101 320
Msa0036830 AT3G54450.1 32.979 564 339 10 17 559 10 555 1.01e-100 317
Msa0036830 AT4G21680.1 34.091 572 346 11 3 550 14 578 1.36e-98 313
Msa0036830 AT2G02020.1 31.657 537 325 5 17 545 40 542 1.11e-97 309
Msa0036830 AT1G32450.1 30.988 597 373 11 1 564 12 602 3.25e-95 305
Msa0036830 AT5G46040.1 30.329 577 375 10 1 557 6 575 1.23e-90 292
Msa0036830 AT1G18880.1 32.014 581 361 13 3 558 7 578 2.74e-88 286
Msa0036830 AT1G72140.1 32.358 547 329 8 17 547 32 553 1.04e-86 281
Msa0036830 AT5G62680.1 31.404 570 353 13 22 561 46 607 1.14e-86 282
Msa0036830 AT5G46050.1 30.427 562 366 10 20 564 28 581 4.24e-86 280
Msa0036830 AT5G19640.1 30.292 548 350 12 20 552 60 590 6.40e-85 277
Msa0036830 AT1G72130.1 30.370 540 345 8 17 550 23 537 1.30e-83 272
Msa0036830 AT1G27080.1 32.131 582 360 13 17 580 12 576 1.06e-82 271
Msa0036830 AT5G28470.2 32.065 552 347 11 17 549 15 557 1.25e-81 267
Msa0036830 AT1G52190.1 29.932 588 377 13 17 576 19 599 6.51e-81 267
Msa0036830 AT1G22570.1 31.429 525 329 10 17 524 28 538 3.36e-80 264
Msa0036830 AT3G47960.1 31.261 563 343 16 22 552 64 614 9.31e-79 262
Msa0036830 AT5G28470.1 31.884 552 346 12 17 549 15 555 1.23e-78 259
Msa0036830 AT1G22540.1 32.072 555 342 11 11 551 24 557 5.03e-78 258
Msa0036830 AT1G27080.2 32.305 551 338 13 48 580 1 534 5.66e-78 257
Msa0036830 AT1G22550.1 30.672 551 348 10 17 549 28 562 2.16e-77 256
Msa0036830 AT1G69860.1 31.250 560 357 12 3 546 2 549 2.67e-77 256
Msa0036830 AT2G02020.2 27.933 537 324 6 17 545 40 521 3.83e-77 254
Msa0036830 AT1G72125.1 31.618 544 342 12 21 549 31 559 1.53e-76 254
Msa0036830 AT1G22570.2 32.056 496 306 10 46 524 20 501 2.25e-76 253
Msa0036830 AT1G72120.1 30.826 545 349 9 17 549 27 555 1.33e-74 249
Msa0036830 AT5G46050.2 31.656 477 301 10 105 564 1 469 8.14e-74 244
Msa0036830 AT1G72130.2 33.412 422 256 7 135 550 17 419 1.25e-73 242
Msa0036830 AT1G72130.3 33.412 422 256 7 135 550 17 419 1.25e-73 242
Msa0036830 AT3G16180.1 28.596 591 376 14 5 561 9 587 1.69e-73 247
Msa0036830 AT3G45660.1 28.596 577 359 17 8 560 10 557 3.79e-67 229
Msa0036830 AT3G45660.3 28.596 577 359 17 8 560 10 557 3.79e-67 229
Msa0036830 AT3G45660.2 28.885 547 339 16 35 560 61 578 9.48e-67 228
Msa0036830 AT3G45650.1 28.731 536 339 14 44 560 47 558 1.00e-64 223
Msa0036830 AT3G45680.1 28.671 572 357 17 2 552 7 548 3.18e-64 221
Msa0036830 AT3G45720.1 29.528 508 322 14 60 551 59 546 1.48e-62 216
Msa0036830 AT3G45700.1 28.445 566 356 16 2 552 7 538 2.41e-61 213
Msa0036830 AT3G45710.1 27.993 568 368 15 2 552 7 550 7.35e-61 212
Msa0036830 AT3G45650.2 27.402 562 339 15 44 560 47 584 2.64e-59 208
Msa0036830 AT5G14940.1 27.758 562 361 15 17 552 5 547 2.69e-57 202
Msa0036830 AT3G45690.1 25.540 556 340 17 19 560 18 513 1.02e-55 197
Msa0036830 AT3G01350.1 25.310 565 381 11 17 552 5 557 2.63e-52 189
Msa0036830 AT5G11570.1 26.749 243 169 3 298 538 236 471 1.43e-24 107
Msa0036830 AT5G11570.1 26.126 222 153 5 20 234 14 231 1.19e-13 73.9
Msa0036830 AT2G38100.2 23.049 551 337 19 47 561 2 501 1.98e-24 107
Msa0036830 AT2G38100.1 22.794 544 347 18 47 561 18 517 6.45e-24 106
Msa0036830 AT2G38100.3 22.794 544 347 18 47 561 24 523 7.87e-24 105

Find 121 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAACCAATAAGCTTATTT+TGG 0.146048 1_1:-65651717 Msa0036830:CDS
GATAACCAAAATAAGCTTAT+TGG 0.163029 1_1:+65651712 None:intergenic
TTGTTTCTTCCATTGAATTA+TGG 0.165374 1_1:+65654170 None:intergenic
TCTTTCAAAAGTTTCTATTT+TGG 0.191150 1_1:-65654394 Msa0036830:five_prime_UTR
GTTTAGCTAGCTTACCATTT+TGG 0.195868 1_1:+65654292 None:intergenic
TGTTTCTTCCATTGAATTAT+GGG 0.210792 1_1:+65654171 None:intergenic
GGATCAGTTATTGGTGTTAC+TGG 0.239958 1_1:-65653276 Msa0036830:CDS
ATTTCTTTAACTTCCTCTAT+TGG 0.242727 1_1:-65651408 Msa0036830:CDS
ACACTGTTGGTTCTGTTCTT+TGG 0.247262 1_1:+65654493 None:intergenic
AACAAGAATGTTACCTATAT+TGG 0.263418 1_1:-65652058 Msa0036830:CDS
CTGTGAAAGAACCAAGTTTA+AGG 0.269342 1_1:+65651962 None:intergenic
AGGTGAAACACCTCTCTTAA+TGG 0.269533 1_1:-65651320 Msa0036830:CDS
TCAACTTTGGGATCAGTTAT+TGG 0.272879 1_1:-65653285 Msa0036830:CDS
CAACACTTTGACAAATTTCA+TGG 0.272897 1_1:-65653917 Msa0036830:CDS
CAGTATTGGCTTCACTAGTT+TGG 0.275066 1_1:+65651251 None:intergenic
ACAAAGAAAAGTTCATAAAT+TGG 0.278308 1_1:+65651886 None:intergenic
AGCTTAGTACTATACTTTAT+TGG 0.282321 1_1:-65653970 Msa0036830:CDS
ATCATTGTGTTTGTATGCTT+TGG 0.282815 1_1:-65653421 Msa0036830:CDS
ACTTTCTTGCTCTCCCTTGT+TGG 0.290210 1_1:-65653889 Msa0036830:CDS
TTATTAATACTGTTACTAAA+AGG 0.292645 1_1:-65651528 Msa0036830:CDS
TTTCTTTAACTTCCTCTATT+GGG 0.299260 1_1:-65651407 Msa0036830:CDS
CTTGATTTACCACATGCTTT+AGG 0.299383 1_1:+65653480 None:intergenic
AGAGCTTCCATGTTCATCTT+TGG 0.307984 1_1:-65654135 Msa0036830:intron
ATGGAGAATACAAAGGAATT+AGG 0.323607 1_1:-65651340 Msa0036830:CDS
ATTGGTACTATTGTTGGTTC+TGG 0.324362 1_1:-65651041 Msa0036830:three_prime_UTR
TTGGTGTTACTGGTATTGTT+TGG 0.332141 1_1:-65653266 Msa0036830:CDS
ACAATTGTACTTGCCAATAT+AGG 0.334608 1_1:+65652045 None:intergenic
TCATTGTGTTTGTATGCTTT+GGG 0.336923 1_1:-65653420 Msa0036830:CDS
AAGAAAATTAGTGGGATAAC+AGG 0.341586 1_1:+65651922 None:intergenic
GCAGACATGTTCACTCTTGT+TGG 0.342817 1_1:-65651664 Msa0036830:CDS
TAAAGTTGTTCATTAGATTC+TGG 0.349322 1_1:+65652980 None:intergenic
AGAGGTTCATTAACAGCATT+TGG 0.351216 1_1:-65653384 Msa0036830:CDS
TTTCCATACTCTCTCCAAAA+TGG 0.361256 1_1:-65654306 Msa0036830:intron
ATATAGGTAACATTCTTGTT+AGG 0.364001 1_1:+65652061 None:intergenic
AAGACATTGATTTGATGTTA+AGG 0.369908 1_1:-65651161 Msa0036830:three_prime_UTR
TGGTGTTACTGGTATTGTTT+GGG 0.373138 1_1:-65653265 Msa0036830:CDS
ACCTGAATAATCCTCAAAAT+AGG 0.374787 1_1:+65653123 None:intergenic
AGAAGAAGAATAACCTCATT+TGG 0.377972 1_1:+65652912 None:intergenic
TGCTAACCAATTTGATGAAA+AGG 0.379188 1_1:-65653361 Msa0036830:CDS
ATAACAGTAGCTTCTTCAAT+TGG 0.385104 1_1:-65653204 Msa0036830:CDS
AAAATCACTCACCACCCTTC+AGG 0.386975 1_1:-65651850 Msa0036830:CDS
TGTAACCAACCTTGTTTACT+TGG 0.393968 1_1:+65651499 None:intergenic
TAAACATTGGATGTGCAAAT+AGG 0.396118 1_1:-65651112 Msa0036830:three_prime_UTR
TGAAGTAGAAAGTGATTTCA+TGG 0.400504 1_1:+65651606 None:intergenic
TGTTTGTATGCTTTGGGAAT+GGG 0.403406 1_1:-65653414 Msa0036830:CDS
GCCATTTCAATGACAATAGC+TGG 0.413834 1_1:-65651784 Msa0036830:CDS
ACCAGCTATTGTCATTGAAA+TGG 0.417173 1_1:+65651783 None:intergenic
ACTTCCTCTATTGGGCCTCT+TGG 0.427686 1_1:-65651399 Msa0036830:CDS
GTGTTTGTATGCTTTGGGAA+TGG 0.428271 1_1:-65653415 Msa0036830:CDS
AGTAAACAAGGTTGGTTACA+AGG 0.439747 1_1:-65651496 Msa0036830:CDS
CAACAGATTCACCACATGTC+TGG 0.446255 1_1:-65653842 Msa0036830:CDS
GTTAAGGAAAACATAGTAGT+AGG 0.451430 1_1:-65651145 Msa0036830:three_prime_UTR
TTGGGAATGGGTGGAGTAAG+AGG 0.455587 1_1:-65653402 Msa0036830:CDS
GAAAGTGATTTCATGGTTGA+AGG 0.467352 1_1:+65651613 None:intergenic
TAATTGATTGGTACTATTGT+TGG 0.467510 1_1:-65651047 Msa0036830:three_prime_UTR
ACATAGTAGTAGGTTGTGTA+TGG 0.485213 1_1:-65651135 Msa0036830:three_prime_UTR
TGCGTGCTTGTATAATTGAT+TGG 0.487662 1_1:-65651059 Msa0036830:three_prime_UTR
AATTCAATGGAAGAAACAAA+AGG 0.488343 1_1:-65654166 Msa0036830:CDS
AATGTGCATAAGAAAATTAG+TGG 0.493180 1_1:+65651913 None:intergenic
GATCACAGTTCAAGCTGCAT+TGG 0.495046 1_1:-65653514 Msa0036830:CDS
AACACTTTGACAAATTTCAT+GGG 0.510777 1_1:-65653916 Msa0036830:CDS
CAAACCTTCCATGGTTGTTG+AGG 0.513690 1_1:+65652114 None:intergenic
AACTCAAACCCATAATTCAA+TGG 0.515700 1_1:-65654179 Msa0036830:CDS
TTGTATGCTTTGGGAATGGG+TGG 0.519214 1_1:-65653411 Msa0036830:CDS
TTTGTCAGCATTGGATAACA+TGG 0.520721 1_1:-65654013 Msa0036830:CDS
TACTATTGTTGGTTCTGGCA+CGG 0.522892 1_1:-65651036 Msa0036830:three_prime_UTR
GAGGTAAGTATCTGAGATGA+AGG 0.523013 1_1:+65653864 None:intergenic
AGAAGAGGGTCCCTCAGTAT+TGG 0.526736 1_1:+65651237 None:intergenic
TAAATACTAGAATACTAGAA+TGG 0.529818 1_1:-65654526 Msa0036830:five_prime_UTR
TCTTCTGATGAAACAGATGA+TGG 0.532640 1_1:-65651217 Msa0036830:CDS
TGTTCATTAGATTCTGGCAG+TGG 0.534338 1_1:+65652986 None:intergenic
ATTCAATGGAAGAAACAAAA+GGG 0.537445 1_1:-65654165 Msa0036830:CDS
ACACCTCTCTTAATGGTTGG+TGG 0.538286 1_1:-65651313 Msa0036830:CDS
GTCACTGTGCAAACCTTCCA+TGG 0.538545 1_1:+65652105 None:intergenic
AGATAGTAACAATTCAATGA+TGG 0.541244 1_1:-65651359 Msa0036830:CDS
ATCTGTTTCATCAGAAGAAG+AGG 0.542967 1_1:+65651222 None:intergenic
CTCTGTGTGTGCAGAGTCAA+AGG 0.543882 1_1:-65651004 Msa0036830:three_prime_UTR
AATTAGTGGGATAACAGGAA+TGG 0.550662 1_1:+65651927 None:intergenic
CATGAAATTTGTCAAAGTGT+TGG 0.551927 1_1:+65653918 None:intergenic
GTTACACAGCTTCAAAGAGT+TGG 0.552152 1_1:-65651826 Msa0036830:CDS
TGTACCAAGAGGCCCAATAG+AGG 0.556413 1_1:+65651395 None:intergenic
AATGCAATGAACCTTAAACT+TGG 0.561968 1_1:-65651973 Msa0036830:CDS
TTGAGATTGAAATGAGAAGA+AGG 0.571870 1_1:+65654358 None:intergenic
TGAAGCTGTGTAACACCTGA+AGG 0.572853 1_1:+65651835 None:intergenic
AAAACATGATGATAAAGCTA+AGG 0.573309 1_1:-65651287 Msa0036830:CDS
GAAGTTAAAAGAAGAGACCA+AGG 0.573829 1_1:-65651754 Msa0036830:CDS
TGAGATGAAGGCACCAACAA+GGG 0.577394 1_1:+65653876 None:intergenic
GACGGTGAGCACAGAAACCA+AGG 0.581377 1_1:-65654585 Msa0036830:five_prime_UTR
TGAACCTCAACAACCATGGA+AGG 0.582478 1_1:-65652118 Msa0036830:CDS
CAGCTTCAAAGAGTTGGTGT+TGG 0.586012 1_1:-65651820 Msa0036830:CDS
CAAACATTCTCAGTACAACA+AGG 0.586833 1_1:-65651997 Msa0036830:CDS
TTGCACACACTAACCAAATG+AGG 0.588659 1_1:-65652925 Msa0036830:intron
ATAACAGGAATGGATGATGC+AGG 0.589149 1_1:+65651937 None:intergenic
CTGAGATGAAGGCACCAACA+AGG 0.591772 1_1:+65653875 None:intergenic
CTTCCACCAACCATTAAGAG+AGG 0.596589 1_1:+65651310 None:intergenic
AAATCAAGTTGTGTGGAAGG+AGG 0.597719 1_1:-65653465 Msa0036830:CDS
TTGTCAGCATTGGATAACAT+GGG 0.598817 1_1:-65654012 Msa0036830:CDS
CAAGAAGTAACCAAGTGACA+TGG 0.600735 1_1:+65651570 None:intergenic
CTCAAAATAGGACTTTCACC+AGG 0.610110 1_1:+65653135 None:intergenic
GAAACACCTCTCTTAATGGT+TGG 0.612482 1_1:-65651316 Msa0036830:CDS
ATTCTGAACCTCAACAACCA+TGG 0.613634 1_1:-65652122 Msa0036830:CDS
TTGGATGTGCAAATAGGAAG+TGG 0.626202 1_1:-65651106 Msa0036830:three_prime_UTR
TTCAATGATGGAGAATACAA+AGG 0.626874 1_1:-65651347 Msa0036830:CDS
TCACACCAAGTAAACAAGGT+TGG 0.627331 1_1:-65651504 Msa0036830:CDS
ATGTGCATAAGAAAATTAGT+GGG 0.636944 1_1:+65651914 None:intergenic
ACTAGTAAAGCATGTTAAGA+CGG 0.638731 1_1:-65654603 Msa0036830:five_prime_UTR
AGGATCACACCAAGTAAACA+AGG 0.639605 1_1:-65651508 Msa0036830:CDS
TCTGTTTCATCAGAAGAAGA+GGG 0.647970 1_1:+65651223 None:intergenic
AATTTACATCCTAAAGCATG+TGG 0.649108 1_1:-65653489 Msa0036830:CDS
GGTAAATCAAGTTGTGTGGA+AGG 0.653776 1_1:-65653468 Msa0036830:CDS
CAATGGAAGAAACAAAAGGG+TGG 0.662396 1_1:-65654162 Msa0036830:CDS
ACTAGTGAAGCCAATACTGA+GGG 0.666695 1_1:-65651247 Msa0036830:CDS
AGGTTGTGTATGGTAAACAT+TGG 0.668701 1_1:-65651125 Msa0036830:three_prime_UTR
AACTAGTGAAGCCAATACTG+AGG 0.674814 1_1:-65651248 Msa0036830:CDS
GAAGCTGTGTAACACCTGAA+GGG 0.679710 1_1:+65651836 None:intergenic
AAACATTCTCAGTACAACAA+GGG 0.685525 1_1:-65651996 Msa0036830:CDS
GTACTTACCAAAGATGAACA+TGG 0.689840 1_1:+65654128 None:intergenic
ATGTGGTAAATCAAGTTGTG+TGG 0.691318 1_1:-65653472 Msa0036830:CDS
GACATGTGGTGAATCTGTTG+AGG 0.692585 1_1:+65653845 None:intergenic
ACGGTGAGCACAGAAACCAA+GGG 0.709215 1_1:-65654584 Msa0036830:five_prime_UTR
GCTGTGTAACACCTGAAGGG+TGG 0.734299 1_1:+65651839 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTCTTTATTTTATGTAAT+TGG + chr1_1:65651780-65651799 None:intergenic 15.0%
!! AAGAAAGAAAAAAAAACATT+TGG - chr1_1:65651793-65651812 Msa0036830:CDS 15.0%
!! TTATCACAAAATGTTAATTA+AGG + chr1_1:65652633-65652652 None:intergenic 15.0%
!!! GTTATTTATTTATTTTGAGA+GGG - chr1_1:65653148-65653167 Msa0036830:CDS 15.0%
!! TTATTAATACTGTTACTAAA+AGG - chr1_1:65653977-65653996 Msa0036830:CDS 15.0%
!! TAAATACTAGAATACTAGAA+TGG - chr1_1:65650979-65650998 Msa0036830:three_prime_UTR 20.0%
!!! TCTTTCAAAAGTTTCTATTT+TGG - chr1_1:65651111-65651130 Msa0036830:three_prime_UTR 20.0%
!!! CTTTCAAAAGTTTCTATTTT+GGG - chr1_1:65651112-65651131 Msa0036830:three_prime_UTR 20.0%
!!! AGTTTGAAATATGTTACTAT+AGG - chr1_1:65651282-65651301 Msa0036830:CDS 20.0%
!!! GTTTGAAATATGTTACTATA+GGG - chr1_1:65651283-65651302 Msa0036830:CDS 20.0%
!!! AAAAACAAAGAGTGTTAATT+TGG + chr1_1:65651413-65651432 None:intergenic 20.0%
!!! TGTAACAAAACATATTGATT+TGG - chr1_1:65651442-65651461 Msa0036830:CDS 20.0%
!!! TATTTTATGTAATTGGAACA+TGG + chr1_1:65651773-65651792 None:intergenic 20.0%
!!! TATCACTTTTTCTTATGTTT+TGG + chr1_1:65652876-65652895 None:intergenic 20.0%
!!! CAAGTACCAATTATTTATTT+TGG - chr1_1:65653015-65653034 Msa0036830:CDS 20.0%
!! ATGGTTCCAAAATAAATAAT+TGG + chr1_1:65653024-65653043 None:intergenic 20.0%
!!! GGTTATTTATTTATTTTGAG+AGG - chr1_1:65653147-65653166 Msa0036830:CDS 20.0%
!! ACAAAGAAAAGTTCATAAAT+TGG + chr1_1:65653622-65653641 None:intergenic 20.0%
!!! TGAGTGATTTTTCTAATAAA+TGG + chr1_1:65653646-65653665 None:intergenic 20.0%
!!! TCTTTTCAATATGCTATATT+TGG - chr1_1:65653814-65653833 Msa0036830:intron 20.0%
!!! ACAATTTGAACTTGTTTTAT+TGG - chr1_1:65654049-65654068 Msa0036830:intron 20.0%
!! TTTTTAATGTCTTACACTGT+TGG + chr1_1:65651028-65651047 None:intergenic 25.0%
! TTAAAAATAAGAACCTCTTG+TGG - chr1_1:65651041-65651060 Msa0036830:three_prime_UTR 25.0%
! TGTTTCTTCCATTGAATTAT+GGG + chr1_1:65651337-65651356 None:intergenic 25.0%
!! TTGTTTCTTCCATTGAATTA+TGG + chr1_1:65651338-65651357 None:intergenic 25.0%
! AATTCAATGGAAGAAACAAA+AGG - chr1_1:65651339-65651358 Msa0036830:CDS 25.0%
! ATTCAATGGAAGAAACAAAA+GGG - chr1_1:65651340-65651359 Msa0036830:CDS 25.0%
! AGCTTAGTACTATACTTTAT+TGG - chr1_1:65651535-65651554 Msa0036830:CDS 25.0%
! AACACTTTGACAAATTTCAT+GGG - chr1_1:65651589-65651608 Msa0036830:CDS 25.0%
!! AAAAAACATTTGGTTTAGAG+AGG - chr1_1:65651803-65651822 Msa0036830:CDS 25.0%
!! TTTTGTCTGGTACAAAATTA+CGG - chr1_1:65651867-65651886 Msa0036830:CDS 25.0%
! AATACTTGTATGTATTGTGT+AGG - chr1_1:65651958-65651977 Msa0036830:CDS 25.0%
!! CTTTTACTTAGTTCAACTTT+GGG - chr1_1:65652208-65652227 Msa0036830:intron 25.0%
!!! TAACCATTATTGTTTTATGC+AGG - chr1_1:65652464-65652483 Msa0036830:intron 25.0%
! TAACCTGCATAAAACAATAA+TGG + chr1_1:65652470-65652489 None:intergenic 25.0%
! TAAAGTTGTTCATTAGATTC+TGG + chr1_1:65652528-65652547 None:intergenic 25.0%
!!! AACATTTTGTGATAATGTGT+TGG - chr1_1:65652638-65652657 Msa0036830:intron 25.0%
! ATTAAGTAATGCCAAGAATT+TGG - chr1_1:65652758-65652777 Msa0036830:intron 25.0%
! TTAAGTAATGCCAAGAATTT+GGG - chr1_1:65652759-65652778 Msa0036830:intron 25.0%
! AAATACCACAAAGAAAAAGA+GGG + chr1_1:65652950-65652969 None:intergenic 25.0%
! CTATGTTATCTACAAAGTAA+AGG + chr1_1:65652984-65653003 None:intergenic 25.0%
!!! TTTATTTATTTTGAGAGGGT+AGG - chr1_1:65653152-65653171 Msa0036830:CDS 25.0%
!!! TTATTTATTTTGAGAGGGTA+GGG - chr1_1:65653153-65653172 Msa0036830:CDS 25.0%
! TTGTGTAAAGGGAAATAAAT+GGG + chr1_1:65653280-65653299 None:intergenic 25.0%
! TTTGTGTAAAGGGAAATAAA+TGG + chr1_1:65653281-65653300 None:intergenic 25.0%
! CATGCATTTATTTGTGTAAA+GGG + chr1_1:65653291-65653310 None:intergenic 25.0%
! GCATTTATACTCAAATGTTA+TGG - chr1_1:65653310-65653329 Msa0036830:CDS 25.0%
! ATATAGGTAACATTCTTGTT+AGG + chr1_1:65653447-65653466 None:intergenic 25.0%
! AACAAGAATGTTACCTATAT+TGG - chr1_1:65653447-65653466 Msa0036830:CDS 25.0%
! ATGTGCATAAGAAAATTAGT+GGG + chr1_1:65653594-65653613 None:intergenic 25.0%
! AATGTGCATAAGAAAATTAG+TGG + chr1_1:65653595-65653614 None:intergenic 25.0%
!!! ATAAGCTTATTGGTTTTGAA+GGG + chr1_1:65653786-65653805 None:intergenic 25.0%
!!! AATAAGCTTATTGGTTTTGA+AGG + chr1_1:65653787-65653806 None:intergenic 25.0%
!! CAAAACCAATAAGCTTATTT+TGG - chr1_1:65653788-65653807 Msa0036830:intron 25.0%
! GATAACCAAAATAAGCTTAT+TGG + chr1_1:65653796-65653815 None:intergenic 25.0%
!! ATTTCTTTAACTTCCTCTAT+TGG - chr1_1:65654097-65654116 Msa0036830:intron 25.0%
!! TTTCTTTAACTTCCTCTATT+GGG - chr1_1:65654098-65654117 Msa0036830:intron 25.0%
! AGATAGTAACAATTCAATGA+TGG - chr1_1:65654146-65654165 Msa0036830:CDS 25.0%
! AAAACATGATGATAAAGCTA+AGG - chr1_1:65654218-65654237 Msa0036830:intron 25.0%
!!! AAGACATTGATTTGATGTTA+AGG - chr1_1:65654344-65654363 Msa0036830:five_prime_UTR 25.0%
! TAATTGATTGGTACTATTGT+TGG - chr1_1:65654458-65654477 Msa0036830:five_prime_UTR 25.0%
ACTAGTAAAGCATGTTAAGA+CGG - chr1_1:65650902-65650921 Msa0036830:three_prime_UTR 30.0%
TGATCATAAAAATCCACAAG+AGG + chr1_1:65651057-65651076 None:intergenic 30.0%
TTGAGATTGAAATGAGAAGA+AGG + chr1_1:65651150-65651169 None:intergenic 30.0%
CAAACTGTTACAAAAGAGAA+GGG + chr1_1:65651268-65651287 None:intergenic 30.0%
TCAAACTGTTACAAAAGAGA+AGG + chr1_1:65651269-65651288 None:intergenic 30.0%
AACTCAAACCCATAATTCAA+TGG - chr1_1:65651326-65651345 Msa0036830:CDS 30.0%
CATGAAATTTGTCAAAGTGT+TGG + chr1_1:65651590-65651609 None:intergenic 30.0%
CAACACTTTGACAAATTTCA+TGG - chr1_1:65651588-65651607 Msa0036830:CDS 30.0%
TTATGAGTTTGACAGAATCA+CGG - chr1_1:65651836-65651855 Msa0036830:CDS 30.0%
AATTTACATCCTAAAGCATG+TGG - chr1_1:65652016-65652035 Msa0036830:CDS 30.0%
ATCATTGTGTTTGTATGCTT+TGG - chr1_1:65652084-65652103 Msa0036830:CDS 30.0%
TCATTGTGTTTGTATGCTTT+GGG - chr1_1:65652085-65652104 Msa0036830:CDS 30.0%
TGCTAACCAATTTGATGAAA+AGG - chr1_1:65652144-65652163 Msa0036830:CDS 30.0%
! TTGGATCCTTTTCATCAAAT+TGG + chr1_1:65652153-65652172 None:intergenic 30.0%
!!! CACTTGCAACTTTTTTCAAT+TGG - chr1_1:65652185-65652204 Msa0036830:intron 30.0%
! GCTTTTACTTAGTTCAACTT+TGG - chr1_1:65652207-65652226 Msa0036830:intron 30.0%
ATAACAGTAGCTTCTTCAAT+TGG - chr1_1:65652301-65652320 Msa0036830:intron 30.0%
!! TCCTATTTTGAGGATTATTC+AGG - chr1_1:65652381-65652400 Msa0036830:intron 30.0%
ACCTGAATAATCCTCAAAAT+AGG + chr1_1:65652385-65652404 None:intergenic 30.0%
! TTTTATGCAGGTTATTGTTG+TGG - chr1_1:65652476-65652495 Msa0036830:intron 30.0%
AGAAGAAGAATAACCTCATT+TGG + chr1_1:65652596-65652615 None:intergenic 30.0%
ATAATGTGTTGGACTAACTT+AGG - chr1_1:65652649-65652668 Msa0036830:intron 30.0%
AAAGAATCTTAACAATGTGC+TGG + chr1_1:65652721-65652740 None:intergenic 30.0%
GTTAACTAAAAAGCAAAGAG+AGG + chr1_1:65652852-65652871 None:intergenic 30.0%
! TTTTTCCCTCTTTTTCTTTG+TGG - chr1_1:65652942-65652961 Msa0036830:CDS 30.0%
CAAATACCACAAAGAAAAAG+AGG + chr1_1:65652951-65652970 None:intergenic 30.0%
! CTCTTTTTCTTTGTGGTATT+TGG - chr1_1:65652949-65652968 Msa0036830:CDS 30.0%
!!! TATTTATTTTGAGAGGGTAG+GGG - chr1_1:65653154-65653173 Msa0036830:CDS 30.0%
AATTGCTAAGGTGAAATTGA+AGG - chr1_1:65653183-65653202 Msa0036830:CDS 30.0%
GATGACAAAGATATTGTTTG+TGG - chr1_1:65653230-65653249 Msa0036830:CDS 30.0%
GCATGCATTTATTTGTGTAA+AGG + chr1_1:65653292-65653311 None:intergenic 30.0%
! ACTCAAATGTTATGGTTTGT+TGG - chr1_1:65653318-65653337 Msa0036830:CDS 30.0%
ACAATTGTACTTGCCAATAT+AGG + chr1_1:65653463-65653482 None:intergenic 30.0%
AAACATTCTCAGTACAACAA+GGG - chr1_1:65653509-65653528 Msa0036830:CDS 30.0%
AATGCAATGAACCTTAAACT+TGG - chr1_1:65653532-65653551 Msa0036830:intron 30.0%
AAGAAAATTAGTGGGATAAC+AGG + chr1_1:65653586-65653605 None:intergenic 30.0%
TGAAGTAGAAAGTGATTTCA+TGG + chr1_1:65653902-65653921 None:intergenic 30.0%
! TTCAATGATGGAGAATACAA+AGG - chr1_1:65654158-65654177 Msa0036830:CDS 30.0%
ATGGAGAATACAAAGGAATT+AGG - chr1_1:65654165-65654184 Msa0036830:CDS 30.0%
GTTAAGGAAAACATAGTAGT+AGG - chr1_1:65654360-65654379 Msa0036830:five_prime_UTR 30.0%
TAAACATTGGATGTGCAAAT+AGG - chr1_1:65654393-65654412 Msa0036830:five_prime_UTR 30.0%
ACAGAAACCAAGGGAAAAAA+AGG - chr1_1:65650930-65650949 Msa0036830:three_prime_UTR 35.0%
!!! CTTTCTACCTTTTTTTCCCT+TGG + chr1_1:65650940-65650959 None:intergenic 35.0%
TTTCCATACTCTCTCCAAAA+TGG - chr1_1:65651199-65651218 Msa0036830:CDS 35.0%
!! TTACCATTTTGGAGAGAGTA+TGG + chr1_1:65651205-65651224 None:intergenic 35.0%
!! GTTTAGCTAGCTTACCATTT+TGG + chr1_1:65651216-65651235 None:intergenic 35.0%
GTACTTACCAAAGATGAACA+TGG + chr1_1:65651380-65651399 None:intergenic 35.0%
! TTTGTCAGCATTGGATAACA+TGG - chr1_1:65651492-65651511 Msa0036830:CDS 35.0%
! TTGTCAGCATTGGATAACAT+GGG - chr1_1:65651493-65651512 Msa0036830:CDS 35.0%
TGTAATTGGAACATGGCATT+GGG + chr1_1:65651766-65651785 None:intergenic 35.0%
ATGTAATTGGAACATGGCAT+TGG + chr1_1:65651767-65651786 None:intergenic 35.0%
TGTATGTATTGTGTAGGCTT+TGG - chr1_1:65651964-65651983 Msa0036830:CDS 35.0%
CTTGATTTACCACATGCTTT+AGG + chr1_1:65652028-65652047 None:intergenic 35.0%
! ATGTGGTAAATCAAGTTGTG+TGG - chr1_1:65652033-65652052 Msa0036830:CDS 35.0%
!! TGTTTGTATGCTTTGGGAAT+GGG - chr1_1:65652091-65652110 Msa0036830:CDS 35.0%
AGAGGTTCATTAACAGCATT+TGG - chr1_1:65652121-65652140 Msa0036830:CDS 35.0%
!! TCAACTTTGGGATCAGTTAT+TGG - chr1_1:65652220-65652239 Msa0036830:intron 35.0%
!! TTGGTGTTACTGGTATTGTT+TGG - chr1_1:65652239-65652258 Msa0036830:intron 35.0%
!! TGGTGTTACTGGTATTGTTT+GGG - chr1_1:65652240-65652259 Msa0036830:intron 35.0%
TACACAAAAAGCTTGGCATT+GGG - chr1_1:65652267-65652286 Msa0036830:intron 35.0%
!!! GGTTTTGTAACACTTGCTAT+TGG - chr1_1:65652322-65652341 Msa0036830:intron 35.0%
!! GGAGTTTTGATACGGTAAAA+AGG + chr1_1:65652352-65652371 None:intergenic 35.0%
! TTTTACCGTATCAAAACTCC+TGG - chr1_1:65652352-65652371 Msa0036830:intron 35.0%
!! TTTCACCAGGAGTTTTGATA+CGG + chr1_1:65652360-65652379 None:intergenic 35.0%
AGACTTACAGAGAATGATCA+TGG - chr1_1:65652817-65652836 Msa0036830:intron 35.0%
!! TTTTTCAGTGAGTTTGTGTC+AGG + chr1_1:65652910-65652929 None:intergenic 35.0%
CGATTAGGTCATACTTTCTA+TGG + chr1_1:65653043-65653062 None:intergenic 35.0%
! TAGAAAGTATGACCTAATCG+CGG - chr1_1:65653043-65653062 Msa0036830:intron 35.0%
CTGATTTCGTTGTGAAATCA+GGG + chr1_1:65653076-65653095 None:intergenic 35.0%
CTGATTTCACAACGAAATCA+GGG - chr1_1:65653075-65653094 Msa0036830:intron 35.0%
TGATTCAAAACACACGCTAA+GGG - chr1_1:65653126-65653145 Msa0036830:CDS 35.0%
!! ATGGTTTGTTGGATTGAATC+AGG - chr1_1:65653329-65653348 Msa0036830:CDS 35.0%
CAAACATTCTCAGTACAACA+AGG - chr1_1:65653508-65653527 Msa0036830:CDS 35.0%
CTGTGAAAGAACCAAGTTTA+AGG + chr1_1:65653546-65653565 None:intergenic 35.0%
AATTAGTGGGATAACAGGAA+TGG + chr1_1:65653581-65653600 None:intergenic 35.0%
ACCAGCTATTGTCATTGAAA+TGG + chr1_1:65653725-65653744 None:intergenic 35.0%
GAAGTTAAAAGAAGAGACCA+AGG - chr1_1:65653751-65653770 Msa0036830:intron 35.0%
GAAAGTGATTTCATGGTTGA+AGG + chr1_1:65653895-65653914 None:intergenic 35.0%
! TGTAACCAACCTTGTTTACT+TGG + chr1_1:65654009-65654028 None:intergenic 35.0%
! AGTAAACAAGGTTGGTTACA+AGG - chr1_1:65654009-65654028 Msa0036830:CDS 35.0%
! TGTTTTGTACTTGTACCAAG+AGG + chr1_1:65654124-65654143 None:intergenic 35.0%
TCTGTTTCATCAGAAGAAGA+GGG + chr1_1:65654285-65654304 None:intergenic 35.0%
ATCTGTTTCATCAGAAGAAG+AGG + chr1_1:65654286-65654305 None:intergenic 35.0%
TCTTCTGATGAAACAGATGA+TGG - chr1_1:65654288-65654307 Msa0036830:intron 35.0%
ACATAGTAGTAGGTTGTGTA+TGG - chr1_1:65654370-65654389 Msa0036830:five_prime_UTR 35.0%
AGGTTGTGTATGGTAAACAT+TGG - chr1_1:65654380-65654399 Msa0036830:five_prime_UTR 35.0%
TGCGTGCTTGTATAATTGAT+TGG - chr1_1:65654446-65654465 Msa0036830:five_prime_UTR 35.0%
!! ATTGGTACTATTGTTGGTTC+TGG - chr1_1:65654464-65654483 Msa0036830:five_prime_UTR 35.0%
!! ACACTGTTGGTTCTGTTCTT+TGG + chr1_1:65651015-65651034 None:intergenic 40.0%
CAATGGAAGAAACAAAAGGG+TGG - chr1_1:65651343-65651362 Msa0036830:CDS 40.0%
AGAGCTTCCATGTTCATCTT+TGG - chr1_1:65651370-65651389 Msa0036830:CDS 40.0%
!! TGATGCAGTTTTGTCAGCAT+TGG - chr1_1:65651483-65651502 Msa0036830:CDS 40.0%
!! CATGGGTTTTGTGACAAACA+TGG - chr1_1:65651510-65651529 Msa0036830:CDS 40.0%
! GAGGTAAGTATCTGAGATGA+AGG + chr1_1:65651644-65651663 None:intergenic 40.0%
!!! TTCACCACATGTCTGGTTTT+TGG - chr1_1:65651670-65651689 Msa0036830:CDS 40.0%
TGATCCAAAAACCAGACATG+TGG + chr1_1:65651677-65651696 None:intergenic 40.0%
! TGGCATTGGGATTTGGAATT+TGG + chr1_1:65651753-65651772 None:intergenic 40.0%
! GGTAAATCAAGTTGTGTGGA+AGG - chr1_1:65652037-65652056 Msa0036830:CDS 40.0%
! AAATCAAGTTGTGTGGAAGG+AGG - chr1_1:65652040-65652059 Msa0036830:CDS 40.0%
!! GTGTTTGTATGCTTTGGGAA+TGG - chr1_1:65652090-65652109 Msa0036830:CDS 40.0%
! GCAAGTGCTTTTGCTTCATT+TGG + chr1_1:65652172-65652191 None:intergenic 40.0%
!! GGATCAGTTATTGGTGTTAC+TGG - chr1_1:65652229-65652248 Msa0036830:intron 40.0%
! GGGTTAGTACACAAAAAGCT+TGG - chr1_1:65652260-65652279 Msa0036830:intron 40.0%
GTACACAAAAAGCTTGGCAT+TGG - chr1_1:65652266-65652285 Msa0036830:intron 40.0%
ACACAAAAAGCTTGGCATTG+GGG - chr1_1:65652268-65652287 Msa0036830:intron 40.0%
CTCAAAATAGGACTTTCACC+AGG + chr1_1:65652373-65652392 None:intergenic 40.0%
! CTGGTGAAAGTCCTATTTTG+AGG - chr1_1:65652371-65652390 Msa0036830:intron 40.0%
TGTTCATTAGATTCTGGCAG+TGG + chr1_1:65652522-65652541 None:intergenic 40.0%
TTGCACACACTAACCAAATG+AGG - chr1_1:65652580-65652599 Msa0036830:intron 40.0%
TGATAGTAGGCCCAAATTCT+TGG + chr1_1:65652772-65652791 None:intergenic 40.0%
GTGTAGAAGTGAGTGATAGT+AGG + chr1_1:65652785-65652804 None:intergenic 40.0%
ATCACTCACTTCTACACGTT+CGG - chr1_1:65652788-65652807 Msa0036830:intron 40.0%
ATTTCGTTGTGAAATCAGGG+TGG + chr1_1:65653073-65653092 None:intergenic 40.0%
CCTGATTTCGTTGTGAAATC+AGG + chr1_1:65653077-65653096 None:intergenic 40.0%
CCTGATTTCACAACGAAATC+AGG - chr1_1:65653074-65653093 Msa0036830:intron 40.0%
GTGATTCAAAACACACGCTA+AGG - chr1_1:65653125-65653144 Msa0036830:CDS 40.0%
ATTCTGAACCTCAACAACCA+TGG - chr1_1:65653383-65653402 Msa0036830:CDS 40.0%
ATAACAGGAATGGATGATGC+AGG + chr1_1:65653571-65653590 None:intergenic 40.0%
GTTACACAGCTTCAAAGAGT+TGG - chr1_1:65653679-65653698 Msa0036830:intron 40.0%
GCCATTTCAATGACAATAGC+TGG - chr1_1:65653721-65653740 Msa0036830:intron 40.0%
! TTGAAGGGTCTTTTCTTCCT+TGG + chr1_1:65653771-65653790 None:intergenic 40.0%
! ACGTTTTTGTCCATGTCACT+TGG - chr1_1:65653925-65653944 Msa0036830:CDS 40.0%
CAAGAAGTAACCAAGTGACA+TGG + chr1_1:65653938-65653957 None:intergenic 40.0%
AGGATCACACCAAGTAAACA+AGG - chr1_1:65653997-65654016 Msa0036830:CDS 40.0%
TCACACCAAGTAAACAAGGT+TGG - chr1_1:65654001-65654020 Msa0036830:CDS 40.0%
AGGTGAAACACCTCTCTTAA+TGG - chr1_1:65654185-65654204 Msa0036830:CDS 40.0%
GAAACACCTCTCTTAATGGT+TGG - chr1_1:65654189-65654208 Msa0036830:CDS 40.0%
!! CAGTATTGGCTTCACTAGTT+TGG + chr1_1:65654257-65654276 None:intergenic 40.0%
AACTAGTGAAGCCAATACTG+AGG - chr1_1:65654257-65654276 Msa0036830:intron 40.0%
ACTAGTGAAGCCAATACTGA+GGG - chr1_1:65654258-65654277 Msa0036830:intron 40.0%
TTGGATGTGCAAATAGGAAG+TGG - chr1_1:65654399-65654418 Msa0036830:five_prime_UTR 40.0%
!! TACTATTGTTGGTTCTGGCA+CGG - chr1_1:65654469-65654488 Msa0036830:five_prime_UTR 40.0%
ACTTTCTTGCTCTCCCTTGT+TGG - chr1_1:65651616-65651635 Msa0036830:CDS 45.0%
!! TGAGATGAAGGCACCAACAA+GGG + chr1_1:65651632-65651651 None:intergenic 45.0%
GACATGTGGTGAATCTGTTG+AGG + chr1_1:65651663-65651682 None:intergenic 45.0%
CAACAGATTCACCACATGTC+TGG - chr1_1:65651663-65651682 Msa0036830:CDS 45.0%
! TGGAACATGGCATTGGGATT+TGG + chr1_1:65651760-65651779 None:intergenic 45.0%
!! CACGGTGAATCACTTTTGTC+TGG - chr1_1:65651854-65651873 Msa0036830:CDS 45.0%
GATCACAGTTCAAGCTGCAT+TGG - chr1_1:65651991-65652010 Msa0036830:CDS 45.0%
!! TTGTATGCTTTGGGAATGGG+TGG - chr1_1:65652094-65652113 Msa0036830:CDS 45.0%
TCACTCACTTCTACACGTTC+GGG - chr1_1:65652789-65652808 Msa0036830:intron 45.0%
!!! TTATTTTGAGAGGGTAGGGG+AGG - chr1_1:65653157-65653176 Msa0036830:CDS 45.0%
TGAACCTCAACAACCATGGA+AGG - chr1_1:65653387-65653406 Msa0036830:CDS 45.0%
CAAACCTTCCATGGTTGTTG+AGG + chr1_1:65653394-65653413 None:intergenic 45.0%
AAAATCACTCACCACCCTTC+AGG - chr1_1:65653655-65653674 Msa0036830:intron 45.0%
GAAGCTGTGTAACACCTGAA+GGG + chr1_1:65653672-65653691 None:intergenic 45.0%
TGAAGCTGTGTAACACCTGA+AGG + chr1_1:65653673-65653692 None:intergenic 45.0%
!! CAGCTTCAAAGAGTTGGTGT+TGG - chr1_1:65653685-65653704 Msa0036830:intron 45.0%
GCAGACATGTTCACTCTTGT+TGG - chr1_1:65653841-65653860 Msa0036830:CDS 45.0%
ACACCTCTCTTAATGGTTGG+TGG - chr1_1:65654192-65654211 Msa0036830:CDS 45.0%
CTTCCACCAACCATTAAGAG+AGG + chr1_1:65654198-65654217 None:intergenic 45.0%
ACGGTGAGCACAGAAACCAA+GGG - chr1_1:65650921-65650940 Msa0036830:three_prime_UTR 50.0%
!! CTGAGATGAAGGCACCAACA+AGG + chr1_1:65651633-65651652 None:intergenic 50.0%
TTGGGAATGGGTGGAGTAAG+AGG - chr1_1:65652103-65652122 Msa0036830:CDS 50.0%
CACTCACTTCTACACGTTCG+GGG - chr1_1:65652790-65652809 Msa0036830:intron 50.0%
TAGGGGAGGTGGAATTGCTA+AGG - chr1_1:65653171-65653190 Msa0036830:CDS 50.0%
GTCACTGTGCAAACCTTCCA+TGG + chr1_1:65653403-65653422 None:intergenic 50.0%
ACTTCCTCTATTGGGCCTCT+TGG - chr1_1:65654106-65654125 Msa0036830:intron 50.0%
TGTACCAAGAGGCCCAATAG+AGG + chr1_1:65654113-65654132 None:intergenic 50.0%
AGAAGAGGGTCCCTCAGTAT+TGG + chr1_1:65654271-65654290 None:intergenic 50.0%
CTCTGTGTGTGCAGAGTCAA+AGG - chr1_1:65654501-65654520 Msa0036830:five_prime_UTR 50.0%
GACGGTGAGCACAGAAACCA+AGG - chr1_1:65650920-65650939 Msa0036830:three_prime_UTR 55.0%
!! TTTTGAGAGGGTAGGGGAGG+TGG - chr1_1:65653160-65653179 Msa0036830:CDS 55.0%
GCTGTGTAACACCTGAAGGG+TGG + chr1_1:65653669-65653688 None:intergenic 55.0%
CAGGGTGGCTCACCGCGATT+AGG + chr1_1:65653058-65653077 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65650895 65654632 65650895 ID=Msa0036830;Name=Msa0036830
chr1_1 mRNA 65650895 65654632 65650895 ID=Msa0036830-mRNA-1;Parent=Msa0036830;Name=Msa0036830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=323|1|1|1|1|1|6|297|610
chr1_1 exon 65650895 65652176 65650895 ID=Msa0036830-mRNA-1:exon:21123;Parent=Msa0036830-mRNA-1
chr1_1 exon 65652926 65653041 65652926 ID=Msa0036830-mRNA-1:exon:21122;Parent=Msa0036830-mRNA-1
chr1_1 exon 65653125 65653547 65653125 ID=Msa0036830-mRNA-1:exon:21121;Parent=Msa0036830-mRNA-1
chr1_1 exon 65653819 65654036 65653819 ID=Msa0036830-mRNA-1:exon:21120;Parent=Msa0036830-mRNA-1
chr1_1 exon 65654136 65654223 65654136 ID=Msa0036830-mRNA-1:exon:21119;Parent=Msa0036830-mRNA-1
chr1_1 exon 65654307 65654632 65654307 ID=Msa0036830-mRNA-1:exon:21118;Parent=Msa0036830-mRNA-1
chr1_1 five_prime_UTR 65654310 65654632 65654310 ID=Msa0036830-mRNA-1:five_prime_utr;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65654307 65654309 65654307 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65654136 65654223 65654136 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65653819 65654036 65653819 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65653125 65653547 65653125 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65652926 65653041 65652926 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 CDS 65651192 65652176 65651192 ID=Msa0036830-mRNA-1:cds;Parent=Msa0036830-mRNA-1
chr1_1 three_prime_UTR 65650895 65651191 65650895 ID=Msa0036830-mRNA-1:three_prime_utr;Parent=Msa0036830-mRNA-1
Gene Sequence

>Msa0036830

ATGGGAGACAAAGAAGTAAAAGAAGAACTCAAACCCATAATTCAATGGAAGAAACAAAAGGGTGGATTTAGAGCTTCCATGTTCATCTTTGTTTTGTCAGCATTGGATAACATGGGTTTTGTGACAAACATGGTGAGCTTAGTACTATACTTTATTGGAGTGATGCACTTTGATCTTTCAAGCTCTGCCAACACTTTGACAAATTTCATGGGCTCAACTTTCTTGCTCTCCCTTGTTGGTGCCTTCATCTCAGATACTTACCTCAACAGATTCACCACATGTCTGGTTTTTGGATCACTCGAAGTTATTGCTTTGGTAATGATCACAGTTCAAGCTGCATTGGATAATTTACATCCTAAAGCATGTGGTAAATCAAGTTGTGTGGAAGGAGGTATAGCAGTGATGTTTTACTCATCATTGTGTTTGTATGCTTTGGGAATGGGTGGAGTAAGAGGTTCATTAACAGCATTTGGTGCTAACCAATTTGATGAAAAGGATCCAAATGAAGCAAAAGCACTTGCAACTTTTTTCAATTGGCTTTTACTTAGTTCAACTTTGGGATCAGTTATTGGTGTTACTGGTATTGTTTGGGTTAGTACACAAAAAGCTTGGCATTGGGGATTTTTCATCATAACAGTAGCTTCTTCAATTGGTTTTGTAACACTTGCTATTGGTAAACCTTTTTACCGTATCAAAACTCCTGGTGAAAGTCCTATTTTGAGGATTATTCAGGTTATTGTTGTGGCTTTTAAGAATAGAAAGCTACCACTGCCAGAATCTAATGAACAACTTTATGAAGTGTATAAAGATGCTACTCTAGAGAAGATTGCACACACTAACCAAATGAGGTTTCTAGATAAAGCAGCAATTCTTCAAGAAAATTCTGAACCTCAACAACCATGGAAGGTTTGCACAGTGACACAAGTTGAAGAAGTAAAAATCCTAACAAGAATGTTACCTATATTGGCAAGTACAATTGTAATGAACACATGTTTAGCACAACTTCAAACATTCTCAGTACAACAAGGGAATGCAATGAACCTTAAACTTGGTTCTTTCACAGTACCTGCATCATCCATTCCTGTTATCCCACTAATTTTCTTATGCACATTGATTCCAATTTATGAACTTTTCTTTGTACCATTTATTAGAAAAATCACTCACCACCCTTCAGGTGTTACACAGCTTCAAAGAGTTGGTGTTGGACTAGTACTCTCAGCCATTTCAATGACAATAGCTGGTTTTATAGAAGTTAAAAGAAGAGACCAAGGAAGAAAAGACCCTTCAAAACCAATAAGCTTATTTTGGTTATCTTTTCAATATGCTATATTTGGTATTGCAGACATGTTCACTCTTGTTGGACTATTAGAATTCTTCTACAGAGAAGCACCTTCAACCATGAAATCACTTTCTACTTCATTCACGTTTTTGTCCATGTCACTTGGTTACTTCTTGAGTACTGTTTTTGTTAATGTTATTAATACTGTTACTAAAAGGATCACACCAAGTAAACAAGGTTGGTTACAAGGTTTTGATTTAAATCAAAACAATTTGAACTTGTTTTATTGGTTCTTAGCTATCTTAAGCTGTCTTAATTTCTTTAACTTCCTCTATTGGGCCTCTTGGTACAAGTACAAAACAGAAGATAGTAACAATTCAATGATGGAGAATACAAAGGAATTAGGTGAAACACCTCTCTTAATGGTTGGTGGAAGAAAACATGATGATAAAGCTAAGGCAAAAGAAAGTAGCCAAACTAGTGAAGCCAATACTGAGGGACCCTCTTCTTCTGATGAAACAGATGATGGCAAAGAGAAAGAAAGACATAGATGA
Protein sequence

>Msa0036830

MGDKEVKEELKPIIQWKKQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLSSSANTLTNFMGSTFLLSLVGAFISDTYLNRFTTCLVFGSLEVIALVMITVQAALDNLHPKACGKSSCVEGGIAVMFYSSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWLLLSSTLGSVIGVTGIVWVSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPILRIIQVIVVAFKNRKLPLPESNEQLYEVYKDATLEKIAHTNQMRFLDKAAILQENSEPQQPWKVCTVTQVEEVKILTRMLPILASTIVMNTCLAQLQTFSVQQGNAMNLKLGSFTVPASSIPVIPLIFLCTLIPIYELFFVPFIRKITHHPSGVTQLQRVGVGLVLSAISMTIAGFIEVKRRDQGRKDPSKPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPSTMKSLSTSFTFLSMSLGYFLSTVFVNVINTVTKRITPSKQGWLQGFDLNQNNLNLFYWFLAILSCLNFFNFLYWASWYKYKTEDSNNSMMENTKELGETPLLMVGGRKHDDKAKAKESSQTSEANTEGPSSSDETDDGKEKERHR*