Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101050 | AEO16612.1 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 6.90e-127 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101050 | sp|Q93WI9|HD3A_ORYSJ | 73.714 | 175 | 44 | 1 | 1 | 173 | 1 | 175 | 6.36e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101050 | G3FCS8 | 100.000 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 3.29e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1101050 | 0.813583 | 2.378131e-51 | -8.615850e-47 |
| Msa0011920 | Msa1101050 | 0.810837 | 9.450101e-51 | -8.615850e-47 |
| Msa0049670 | Msa1101050 | 0.803480 | 3.417411e-49 | -8.615850e-47 |
| Msa0056230 | Msa1101050 | 0.806168 | 9.378991e-50 | -8.615850e-47 |
| Msa0081700 | Msa1101050 | 0.811584 | 6.506743e-51 | -8.615850e-47 |
| Msa0617470 | Msa1101050 | 0.813920 | 2.005006e-51 | -8.615850e-47 |
| Msa0625550 | Msa1101050 | 0.803763 | 2.985319e-49 | -8.615850e-47 |
| Msa0654400 | Msa1101050 | 0.816403 | 5.631241e-52 | -8.615850e-47 |
| Msa0654500 | Msa1101050 | 0.817291 | 3.559255e-52 | -8.615850e-47 |
| Msa0656570 | Msa1101050 | 0.802040 | 6.775385e-49 | -8.615850e-47 |
| Msa0676290 | Msa1101050 | 0.806471 | 8.093633e-50 | -8.615850e-47 |
| Msa0690100 | Msa1101050 | 0.800756 | 1.241116e-48 | -8.615850e-47 |
| Msa0700250 | Msa1101050 | 0.805240 | 1.468518e-49 | -8.615850e-47 |
| Msa0127910 | Msa1101050 | 0.819509 | 1.119030e-52 | -8.615850e-47 |
| Msa0139930 | Msa1101050 | 0.844320 | 8.133720e-59 | -8.615850e-47 |
| Msa0173950 | Msa1101050 | 0.814256 | 1.690398e-51 | -8.615850e-47 |
| Msa0174060 | Msa1101050 | 0.814043 | 1.883113e-51 | -8.615850e-47 |
| Msa0368450 | Msa1101050 | 0.809560 | 1.781352e-50 | -8.615850e-47 |
| Msa0378440 | Msa1101050 | 0.803946 | 2.735125e-49 | -8.615850e-47 |
| Msa0380450 | Msa1101050 | 0.801537 | 8.591638e-49 | -8.615850e-47 |
| Msa0390590 | Msa1101050 | 0.820256 | 7.551829e-53 | -8.615850e-47 |
| Msa0414510 | Msa1101050 | 0.811884 | 5.600176e-51 | -8.615850e-47 |
| Msa0427890 | Msa1101050 | 0.818359 | 2.043080e-52 | -8.615850e-47 |
| Msa0474120 | Msa1101050 | 0.818573 | 1.826848e-52 | -8.615850e-47 |
| Msa1004630 | Msa1101050 | 0.818077 | 2.365684e-52 | -8.615850e-47 |
| Msa1004660 | Msa1101050 | 0.845248 | 4.571583e-59 | -8.615850e-47 |
| Msa1031310 | Msa1101050 | 0.956986 | 8.026807e-115 | -8.615850e-47 |
| Msa1045940 | Msa1101050 | 0.838642 | 2.546991e-57 | -8.615850e-47 |
| Msa1046980 | Msa1101050 | 0.841724 | 3.993502e-58 | -8.615850e-47 |
| Msa1046990 | Msa1101050 | 0.832096 | 1.148876e-55 | -8.615850e-47 |
| Msa1057940 | Msa1101050 | 0.812016 | 5.240993e-51 | -8.615850e-47 |
| Msa1091130 | Msa1101050 | 0.833387 | 5.490019e-56 | -8.615850e-47 |
| Msa1101050 | Msa1104020 | 0.822052 | 2.910951e-53 | -8.615850e-47 |
| Msa1101050 | Msa1134430 | 0.834242 | 3.357389e-56 | -8.615850e-47 |
| Msa1101050 | Msa1134460 | 0.818236 | 2.177466e-52 | -8.615850e-47 |
| Msa1101050 | Msa1134480 | 0.827531 | 1.486081e-54 | -8.615850e-47 |
| Msa1101050 | Msa1158280 | 0.957407 | 2.922491e-115 | -8.615850e-47 |
| Msa1101050 | Msa1199540 | 0.801491 | 8.781860e-49 | -8.615850e-47 |
| Msa1101050 | Msa1213470 | 0.817783 | 2.757154e-52 | -8.615850e-47 |
| Msa1101050 | Msa1300370 | 0.818806 | 1.617705e-52 | -8.615850e-47 |
| Msa1101050 | Msa1305970 | 0.814778 | 1.295615e-51 | -8.615850e-47 |
| Msa1101050 | Msa1397560 | 0.816763 | 4.677199e-52 | -8.615850e-47 |
| Msa1101050 | Msa1410480 | 0.808909 | 2.457109e-50 | -8.615850e-47 |
| Msa1101050 | Msa1410500 | 0.800109 | 1.681676e-48 | -8.615850e-47 |
| Msa1101050 | Msa1421520 | 0.811722 | 6.073796e-51 | -8.615850e-47 |
| Msa0334450 | Msa1101050 | 0.801635 | 8.203043e-49 | -8.615850e-47 |
| Msa0502900 | Msa1101050 | 0.824925 | 6.196670e-54 | -8.615850e-47 |
| Msa0506090 | Msa1101050 | 0.819875 | 9.228787e-53 | -8.615850e-47 |
| Msa0533610 | Msa1101050 | 0.802232 | 6.186055e-49 | -8.615850e-47 |
| Msa0539570 | Msa1101050 | 0.813400 | 2.608858e-51 | -8.615850e-47 |
| Msa0545750 | Msa1101050 | 0.812350 | 4.432454e-51 | -8.615850e-47 |
| Msa0559440 | Msa1101050 | 0.823212 | 1.563877e-53 | -8.615850e-47 |
| Msa0559640 | Msa1101050 | 0.811911 | 5.523010e-51 | -8.615850e-47 |
| Msa0577960 | Msa1101050 | 0.803867 | 2.840596e-49 | -8.615850e-47 |
| Msa0869320 | Msa1101050 | 0.818593 | 1.808238e-52 | -8.615850e-47 |
| Msa0870220 | Msa1101050 | 0.818057 | 2.391177e-52 | -8.615850e-47 |
| Msa0903460 | Msa1101050 | 0.809760 | 1.613608e-50 | -8.615850e-47 |
| Msa0934290 | Msa1101050 | 0.821171 | 4.653474e-53 | -8.615850e-47 |
| Msa0935930 | Msa1101050 | 0.814212 | 1.728750e-51 | -8.615850e-47 |
| Msa0956600 | Msa1101050 | 0.803424 | 3.509217e-49 | -8.615850e-47 |
| Msa0971780 | Msa1101050 | 0.826270 | 2.975323e-54 | -8.615850e-47 |
| Msa0972930 | Msa1101050 | 0.801465 | 8.891609e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101050 | MtrunA17_Chr7g0252784 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 1.69e-128 | 357 |
| Msa1101050 | MtrunA17_Chr7g0252800 | 77.714 | 175 | 39 | 0 | 2 | 176 | 3 | 177 | 3.56e-102 | 291 |
| Msa1101050 | MtrunA17_Chr6g0461711 | 74.566 | 173 | 44 | 0 | 1 | 173 | 1 | 173 | 3.01e-95 | 273 |
| Msa1101050 | MtrunA17_Chr7g0214761 | 70.690 | 174 | 50 | 1 | 1 | 173 | 1 | 174 | 7.49e-87 | 252 |
| Msa1101050 | MtrunA17_Chr7g0214771 | 68.966 | 174 | 53 | 1 | 1 | 173 | 1 | 174 | 1.96e-85 | 249 |
| Msa1101050 | MtrunA17_Chr6g0472451 | 59.639 | 166 | 67 | 0 | 8 | 173 | 7 | 172 | 7.51e-74 | 219 |
| Msa1101050 | MtrunA17_Chr7g0252811 | 61.250 | 160 | 61 | 1 | 14 | 173 | 36 | 194 | 1.55e-70 | 212 |
| Msa1101050 | MtrunA17_Chr7g0266201 | 57.471 | 174 | 73 | 1 | 1 | 173 | 1 | 174 | 6.23e-69 | 207 |
| Msa1101050 | MtrunA17_Chr2g0321301 | 56.548 | 168 | 72 | 1 | 7 | 173 | 6 | 173 | 8.41e-68 | 204 |
| Msa1101050 | MtrunA17_Chr1g0178751 | 52.727 | 165 | 76 | 1 | 1 | 163 | 1 | 165 | 9.99e-63 | 191 |
| Msa1101050 | MtrunA17_Chr8g0392741 | 50.575 | 174 | 84 | 2 | 1 | 173 | 1 | 173 | 1.15e-56 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101050 | AT1G65480.2 | 71.098 | 173 | 50 | 0 | 1 | 173 | 45 | 217 | 1.20e-91 | 266 |
| Msa1101050 | AT1G65480.1 | 71.098 | 173 | 50 | 0 | 1 | 173 | 1 | 173 | 1.72e-91 | 264 |
| Msa1101050 | AT4G20370.1 | 68.208 | 173 | 55 | 0 | 1 | 173 | 1 | 173 | 2.73e-85 | 248 |
| Msa1101050 | AT5G03840.1 | 58.333 | 168 | 67 | 2 | 8 | 173 | 11 | 177 | 8.03e-67 | 202 |
| Msa1101050 | AT5G62040.1 | 56.970 | 165 | 69 | 2 | 7 | 169 | 6 | 170 | 1.78e-66 | 201 |
| Msa1101050 | AT2G27550.1 | 56.000 | 175 | 75 | 2 | 1 | 173 | 1 | 175 | 3.26e-66 | 200 |
| Msa1101050 | AT1G18100.1 | 49.133 | 173 | 85 | 2 | 3 | 173 | 2 | 173 | 2.48e-54 | 170 |
Find 59 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTACATTGTTGATGAAAT+AGG | 0.231768 | 7_3:+31554472 | None:intergenic |
| CTGGCTGTAGGGCGTGTAAT+AGG | 0.236534 | 7_3:-31556027 | Msa1101050:CDS |
| GAGCTCAAACCTTCTCAAAT+TGG | 0.266960 | 7_3:-31555928 | Msa1101050:CDS |
| TCCTTAAAAGTGGGGTTACT+TGG | 0.279792 | 7_3:+31555696 | None:intergenic |
| TGGCTGTAGGGCGTGTAATA+GGG | 0.298942 | 7_3:-31556026 | Msa1101050:CDS |
| GAAAGGCCACGACCCACTTC+GGG | 0.356462 | 7_3:-31554516 | Msa1101050:CDS |
| TTACTTGGGCTAGGTGAATC+AGG | 0.383636 | 7_3:+31555711 | None:intergenic |
| TTTGCTGAACTCTACAATCT+TGG | 0.383955 | 7_3:-31554402 | Msa1101050:CDS |
| AAAGTGACTTCAGTGGTTCC+TGG | 0.411425 | 7_3:+31555538 | None:intergenic |
| TGTCAAAGGGAGAGTGGCTC+TGG | 0.412838 | 7_3:-31554351 | Msa1101050:CDS |
| AGGTTGGTGACTGATATTCC+AGG | 0.439180 | 7_3:-31555556 | Msa1101050:CDS |
| GGTAATAAAGATGTGAATAA+TGG | 0.441855 | 7_3:-31555955 | Msa1101050:CDS |
| GTTTCCACCAACACTCACTC+TGG | 0.463855 | 7_3:+31555897 | None:intergenic |
| TGAAAGGCCACGACCCACTT+CGG | 0.476912 | 7_3:-31554517 | Msa1101050:CDS |
| TCATCAACAATGTAGACAAA+GGG | 0.476961 | 7_3:-31554466 | Msa1101050:CDS |
| TTAATATAATAATTATCTAA+AGG | 0.478344 | 7_3:+31554320 | None:intergenic |
| TTGAAGAAGACAGCAGCAAC+AGG | 0.481772 | 7_3:+31554375 | None:intergenic |
| CTGTCTTCTTCAATTGTCAA+AGG | 0.484561 | 7_3:-31554365 | Msa1101050:CDS |
| GGAACCACTGAAGTCACTTT+CGG | 0.499071 | 7_3:-31555535 | Msa1101050:intron |
| CAACCCAGAGTGAGTGTTGG+TGG | 0.502018 | 7_3:-31555901 | Msa1101050:CDS |
| CCTTAAAAGTGGGGTTACTT+GGG | 0.502208 | 7_3:+31555697 | None:intergenic |
| AGACAAAGGGTTTATGCTCC+AGG | 0.503769 | 7_3:-31554453 | Msa1101050:CDS |
| ATTCCTCTCCGAGTGACCTA+TGG | 0.511136 | 7_3:-31555976 | Msa1101050:CDS |
| TGGATCCCCGAAGTGGGTCG+TGG | 0.516083 | 7_3:+31554510 | None:intergenic |
| TGTCTTCTTCAATTGTCAAA+GGG | 0.520471 | 7_3:-31554364 | Msa1101050:CDS |
| GTGGAGGTACTCCTTAAAAG+TGG | 0.534289 | 7_3:+31555686 | None:intergenic |
| GTAGGAATCCACTGGCTGTA+GGG | 0.534446 | 7_3:-31556038 | Msa1101050:CDS |
| TGAGAACTGAGAACCACATA+TGG | 0.535865 | 7_3:-31556070 | Msa1101050:exon |
| CTTTATTACCATAGGTCACT+CGG | 0.538470 | 7_3:+31555968 | None:intergenic |
| ATTCACATCTTTATTACCAT+AGG | 0.539018 | 7_3:+31555960 | None:intergenic |
| TTCATCAACAATGTAGACAA+AGG | 0.541638 | 7_3:-31554467 | Msa1101050:CDS |
| GAGAGGAATGGAACTTTCAA+AGG | 0.547771 | 7_3:+31555990 | None:intergenic |
| GGCTGTAGGGCGTGTAATAG+GGG | 0.552217 | 7_3:-31556025 | Msa1101050:CDS |
| TTCAATTGTCAAAGGGAGAG+TGG | 0.552986 | 7_3:-31554357 | Msa1101050:CDS |
| AAAGTGGGGTTACTTGGGCT+AGG | 0.558426 | 7_3:+31555702 | None:intergenic |
| TTTCCACCAACACTCACTCT+GGG | 0.558856 | 7_3:+31555898 | None:intergenic |
| TGATTTGCACATAGGTAATG+AGG | 0.563045 | 7_3:-31554550 | Msa1101050:intron |
| CGGTAGCAGTAGGAATCCAC+TGG | 0.566544 | 7_3:-31556046 | Msa1101050:CDS |
| GGTTGATTGCCAATTTGAGA+AGG | 0.568164 | 7_3:+31555919 | None:intergenic |
| TGGAGGTACTCCTTAAAAGT+GGG | 0.569324 | 7_3:+31555687 | None:intergenic |
| ATGAGGTTGTAAATTATGAA+AGG | 0.570056 | 7_3:-31554533 | Msa1101050:CDS |
| CACATATGGCCGGTAGCAGT+AGG | 0.586122 | 7_3:-31556056 | Msa1101050:exon |
| TGTAAATTACTAGGGTGTAG+AGG | 0.586142 | 7_3:+31555863 | None:intergenic |
| ATAGGTCACTCGGAGAGGAA+TGG | 0.588640 | 7_3:+31555978 | None:intergenic |
| AACTGAGAACCACATATGGC+CGG | 0.594659 | 7_3:-31556066 | Msa1101050:exon |
| CAAAGGGAGAGTGGCTCTGG+CGG | 0.601132 | 7_3:-31554348 | Msa1101050:CDS |
| AGTAGGAATCCACTGGCTGT+AGG | 0.611301 | 7_3:-31556039 | Msa1101050:CDS |
| AAACGATGGATCCCCGAAGT+GGG | 0.619464 | 7_3:+31554504 | None:intergenic |
| CAGTGGATTCCTACTGCTAC+CGG | 0.625296 | 7_3:+31556047 | None:intergenic |
| AAAGGCCACGACCCACTTCG+GGG | 0.626977 | 7_3:-31554515 | Msa1101050:CDS |
| GAAACGATGGATCCCCGAAG+TGG | 0.627096 | 7_3:+31554503 | None:intergenic |
| ATTACACGCCCTACAGCCAG+TGG | 0.629675 | 7_3:+31556030 | None:intergenic |
| TTACCATAGGTCACTCGGAG+AGG | 0.633443 | 7_3:+31555973 | None:intergenic |
| ATAGGACAAACACGAAACGA+TGG | 0.633568 | 7_3:+31554490 | None:intergenic |
| ATTGATTTACTCACCAGTGG+AGG | 0.648865 | 7_3:+31555670 | None:intergenic |
| AAAGGGTTTATGCTCCAGGA+TGG | 0.651446 | 7_3:-31554449 | Msa1101050:CDS |
| CATACCGAAAGTGACTTCAG+TGG | 0.673624 | 7_3:+31555531 | None:intergenic |
| GGAGGTACTCCTTAAAAGTG+GGG | 0.684138 | 7_3:+31555688 | None:intergenic |
| AATCAACCCAGAGTGAGTGT+TGG | 0.706365 | 7_3:-31555904 | Msa1101050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTTAAATAT+AGG | - | chr7_3:31555403-31555422 | Msa1101050:intron | 0.0% |
| !!! | TGAAGAAATTTTAATTTTTT+TGG | - | chr7_3:31555498-31555517 | Msa1101050:intron | 10.0% |
| !! | CTATATAATGTAAATTACTA+GGG | + | chr7_3:31554570-31554589 | None:intergenic | 15.0% |
| !! | ACTATATAATGTAAATTACT+AGG | + | chr7_3:31554571-31554590 | None:intergenic | 15.0% |
| !! | TATTATTTAACAAAAGTCTT+AGG | + | chr7_3:31554815-31554834 | None:intergenic | 15.0% |
| !!! | TTTTTACAAATAAAGTTAGA+GGG | - | chr7_3:31554982-31555001 | Msa1101050:intron | 15.0% |
| !! | TAACTTCAAAATATGAAAAA+AGG | - | chr7_3:31555216-31555235 | Msa1101050:intron | 15.0% |
| !!! | GTTTTTTATAAATTGCAAAT+TGG | + | chr7_3:31555273-31555292 | None:intergenic | 15.0% |
| !! | AGAAACTACATTATGATAAT+AGG | + | chr7_3:31554656-31554675 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTCTATTTTTAT+AGG | - | chr7_3:31554677-31554696 | Msa1101050:intron | 20.0% |
| !! | ATAATATAACAAGAACTCAA+TGG | - | chr7_3:31554936-31554955 | Msa1101050:intron | 20.0% |
| !! | TAATATAACAAGAACTCAAT+GGG | - | chr7_3:31554937-31554956 | Msa1101050:intron | 20.0% |
| !!! | CTTTTTACAAATAAAGTTAG+AGG | - | chr7_3:31554981-31555000 | Msa1101050:intron | 20.0% |
| !!! | TTTAGAGAAACTAGAATTTT+AGG | - | chr7_3:31555067-31555086 | Msa1101050:intron | 20.0% |
| !! | GCAATTTATAAAAAACTCAT+AGG | - | chr7_3:31555277-31555296 | Msa1101050:intron | 20.0% |
| !!! | AATTTTCAAAAACTGCAAAT+TGG | + | chr7_3:31555305-31555324 | None:intergenic | 20.0% |
| !!! | TGCAGTTTTTGAAAATTTAA+AGG | - | chr7_3:31555308-31555327 | Msa1101050:intron | 20.0% |
| !!! | GCAGTTTTTGAAAATTTAAA+GGG | - | chr7_3:31555309-31555328 | Msa1101050:intron | 20.0% |
| !! | AATAAATGAATATGCTACAA+TGG | + | chr7_3:31555705-31555724 | None:intergenic | 20.0% |
| !! | ATCAAACTCAAAATTAACTA+GGG | + | chr7_3:31555852-31555871 | None:intergenic | 20.0% |
| !! | AATCAAACTCAAAATTAACT+AGG | + | chr7_3:31555853-31555872 | None:intergenic | 20.0% |
| ! | ATTCACATCTTTATTACCAT+AGG | + | chr7_3:31554465-31554484 | None:intergenic | 25.0% |
| ! | GGTAATAAAGATGTGAATAA+TGG | - | chr7_3:31554467-31554486 | Msa1101050:CDS | 25.0% |
| !!! | TGCTCTATTTTTATAGGTTA+TGG | - | chr7_3:31554683-31554702 | Msa1101050:intron | 25.0% |
| !!! | TCTATTTTTATAGGTTATGG+TGG | - | chr7_3:31554686-31554705 | Msa1101050:intron | 25.0% |
| !! | CATTTCTAATTTTTCTTGCT+TGG | - | chr7_3:31555118-31555137 | Msa1101050:intron | 25.0% |
| ! | ATGAAATTTCAGAAAAGTTG+AGG | - | chr7_3:31555190-31555209 | Msa1101050:intron | 25.0% |
| ! | TGAAATTTCAGAAAAGTTGA+GGG | - | chr7_3:31555191-31555210 | Msa1101050:intron | 25.0% |
| ! | CACTTTCAAATTATGCAAAT+TGG | + | chr7_3:31555431-31555450 | None:intergenic | 25.0% |
| !! | GGTTTTTACCAAAATCATAT+TGG | + | chr7_3:31555592-31555611 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGTTCTAATGCAT+TGG | + | chr7_3:31555613-31555632 | None:intergenic | 25.0% |
| !! | TTTTGCATTTCTTAGATGTT+TGG | + | chr7_3:31555677-31555696 | None:intergenic | 25.0% |
| ! | TATTAAAGAGAAAGACTACA+TGG | - | chr7_3:31555780-31555799 | Msa1101050:intron | 25.0% |
| ! | AAATGAACAATTCTACCAAT+AGG | + | chr7_3:31555811-31555830 | None:intergenic | 25.0% |
| ! | ATGAGGTTGTAAATTATGAA+AGG | - | chr7_3:31555889-31555908 | Msa1101050:CDS | 25.0% |
| AACCTAAAGTTTATTGAGAG+AGG | + | chr7_3:31554851-31554870 | None:intergenic | 30.0% | |
| TCTCTCAATAAACTTTAGGT+TGG | - | chr7_3:31554850-31554869 | Msa1101050:intron | 30.0% | |
| ! | GTATGTATCTGTTACTTGTT+AGG | - | chr7_3:31554909-31554928 | Msa1101050:intron | 30.0% |
| ! | ATCCAACAAAGTTTAAGACT+GGG | + | chr7_3:31555163-31555182 | None:intergenic | 30.0% |
| ! | AATCCAACAAAGTTTAAGAC+TGG | + | chr7_3:31555164-31555183 | None:intergenic | 30.0% |
| CTCTGAATTTGACAAAACTA+TGG | + | chr7_3:31555649-31555668 | None:intergenic | 30.0% | |
| AAACTCAAAATTAACTAGGG+TGG | + | chr7_3:31555849-31555868 | None:intergenic | 30.0% | |
| !! | AGTTTGATTGATTTGCACAT+AGG | - | chr7_3:31555864-31555883 | Msa1101050:intron | 30.0% |
| ! | GTCTACATTGTTGATGAAAT+AGG | + | chr7_3:31555953-31555972 | None:intergenic | 30.0% |
| TTCATCAACAATGTAGACAA+AGG | - | chr7_3:31555955-31555974 | Msa1101050:CDS | 30.0% | |
| TCATCAACAATGTAGACAAA+GGG | - | chr7_3:31555956-31555975 | Msa1101050:CDS | 30.0% | |
| TGTCTTCTTCAATTGTCAAA+GGG | - | chr7_3:31556058-31556077 | Msa1101050:exon | 30.0% | |
| CTTTATTACCATAGGTCACT+CGG | + | chr7_3:31554457-31554476 | None:intergenic | 35.0% | |
| TGTAAATTACTAGGGTGTAG+AGG | + | chr7_3:31554562-31554581 | None:intergenic | 35.0% | |
| ! | GTAATTGATTTACTCACCAG+TGG | + | chr7_3:31554758-31554777 | None:intergenic | 35.0% |
| TTTCAATCATAAGCAGCGTA+AGG | + | chr7_3:31554784-31554803 | None:intergenic | 35.0% | |
| CTCCTCTCTCAATAAACTTT+AGG | - | chr7_3:31554846-31554865 | Msa1101050:intron | 35.0% | |
| ACATTACTCTTGAGTGTGTT+TGG | - | chr7_3:31555027-31555046 | Msa1101050:intron | 35.0% | |
| ! | TCCAACAAAGTTTAAGACTG+GGG | + | chr7_3:31555162-31555181 | None:intergenic | 35.0% |
| ! | ACCACATGCCAATATGATTT+TGG | - | chr7_3:31555581-31555600 | Msa1101050:intron | 35.0% |
| ACCAAAATCATATTGGCATG+TGG | + | chr7_3:31555585-31555604 | None:intergenic | 35.0% | |
| ! | TGATTTGCACATAGGTAATG+AGG | - | chr7_3:31555872-31555891 | Msa1101050:intron | 35.0% |
| TTTGCTGAACTCTACAATCT+TGG | - | chr7_3:31556020-31556039 | Msa1101050:CDS | 35.0% | |
| CTGTCTTCTTCAATTGTCAA+AGG | - | chr7_3:31556057-31556076 | Msa1101050:exon | 35.0% | |
| TGAGAACTGAGAACCACATA+TGG | - | chr7_3:31554352-31554371 | Msa1101050:CDS | 40.0% | |
| GAGAGGAATGGAACTTTCAA+AGG | + | chr7_3:31554435-31554454 | None:intergenic | 40.0% | |
| GAGCTCAAACCTTCTCAAAT+TGG | - | chr7_3:31554494-31554513 | Msa1101050:CDS | 40.0% | |
| GGTTGATTGCCAATTTGAGA+AGG | + | chr7_3:31554506-31554525 | None:intergenic | 40.0% | |
| CCTTAAAAGTGGGGTTACTT+GGG | + | chr7_3:31554728-31554747 | None:intergenic | 40.0% | |
| TCCTTAAAAGTGGGGTTACT+TGG | + | chr7_3:31554729-31554748 | None:intergenic | 40.0% | |
| !! | TGGAGGTACTCCTTAAAAGT+GGG | + | chr7_3:31554738-31554757 | None:intergenic | 40.0% |
| ! | ATTGATTTACTCACCAGTGG+AGG | + | chr7_3:31554755-31554774 | None:intergenic | 40.0% |
| TCCCCAGTCTTAAACTTTGT+TGG | - | chr7_3:31555158-31555177 | Msa1101050:intron | 40.0% | |
| GACTACATGGTTATGCCTAT+TGG | - | chr7_3:31555793-31555812 | Msa1101050:intron | 40.0% | |
| ATAGGACAAACACGAAACGA+TGG | + | chr7_3:31555935-31555954 | None:intergenic | 40.0% | |
| ! | TTGAAATTTTGTCGCCATCC+TGG | + | chr7_3:31555990-31556009 | None:intergenic | 40.0% |
| TTCAATTGTCAAAGGGAGAG+TGG | - | chr7_3:31556065-31556084 | Msa1101050:exon | 40.0% | |
| AACTGAGAACCACATATGGC+CGG | - | chr7_3:31554356-31554375 | Msa1101050:CDS | 45.0% | |
| AATCAACCCAGAGTGAGTGT+TGG | - | chr7_3:31554518-31554537 | Msa1101050:CDS | 45.0% | |
| TTTCCACCAACACTCACTCT+GGG | + | chr7_3:31554527-31554546 | None:intergenic | 45.0% | |
| ! | TTACTTGGGCTAGGTGAATC+AGG | + | chr7_3:31554714-31554733 | None:intergenic | 45.0% |
| !! | CCCAAGTAACCCCACTTTTA+AGG | - | chr7_3:31554725-31554744 | Msa1101050:intron | 45.0% |
| !! | GGAGGTACTCCTTAAAAGTG+GGG | + | chr7_3:31554737-31554756 | None:intergenic | 45.0% |
| !! | GTGGAGGTACTCCTTAAAAG+TGG | + | chr7_3:31554739-31554758 | None:intergenic | 45.0% |
| !!! | CTTTTAAGGAGTACCTCCAC+TGG | - | chr7_3:31554739-31554758 | Msa1101050:intron | 45.0% |
| !! | AGGTTGGTGACTGATATTCC+AGG | - | chr7_3:31554866-31554885 | Msa1101050:intron | 45.0% |
| AAAGTGACTTCAGTGGTTCC+TGG | + | chr7_3:31554887-31554906 | None:intergenic | 45.0% | |
| ! | GGAACCACTGAAGTCACTTT+CGG | - | chr7_3:31554887-31554906 | Msa1101050:intron | 45.0% |
| CATACCGAAAGTGACTTCAG+TGG | + | chr7_3:31554894-31554913 | None:intergenic | 45.0% | |
| AGACAAAGGGTTTATGCTCC+AGG | - | chr7_3:31555969-31555988 | Msa1101050:CDS | 45.0% | |
| AAAGGGTTTATGCTCCAGGA+TGG | - | chr7_3:31555973-31555992 | Msa1101050:CDS | 45.0% | |
| TTGAAGAAGACAGCAGCAAC+AGG | + | chr7_3:31556050-31556069 | None:intergenic | 45.0% | |
| !!! | TTACAATTTTTTAAAATTAT+AGG | - | chr7_3:31555245-31555264 | Msa1101050:intron | 5.0% |
| !!! | TATTTTAAAAAAATACAAAT+TGG | + | chr7_3:31555336-31555355 | None:intergenic | 5.0% |
| !!! | TTTGTATTTTTTTAAAATAT+AGG | - | chr7_3:31555337-31555356 | Msa1101050:intron | 5.0% |
| !!! | TTGTATTTTTTTAAAATATA+GGG | - | chr7_3:31555338-31555357 | Msa1101050:intron | 5.0% |
| !!! | ATTATTAAAATTTTGAAATT+TGG | + | chr7_3:31555365-31555384 | None:intergenic | 5.0% |
| !!! | TCAAAATTTTAATAATATAT+AGG | - | chr7_3:31555369-31555388 | Msa1101050:intron | 5.0% |
| !!! | CAAAATTTTAATAATATATA+GGG | - | chr7_3:31555370-31555389 | Msa1101050:intron | 5.0% |
| ! | CAGTGGATTCCTACTGCTAC+CGG | + | chr7_3:31554378-31554397 | None:intergenic | 50.0% |
| ! | AGTAGGAATCCACTGGCTGT+AGG | - | chr7_3:31554383-31554402 | Msa1101050:CDS | 50.0% |
| ! | GTAGGAATCCACTGGCTGTA+GGG | - | chr7_3:31554384-31554403 | Msa1101050:CDS | 50.0% |
| TGGCTGTAGGGCGTGTAATA+GGG | - | chr7_3:31554396-31554415 | Msa1101050:CDS | 50.0% | |
| ATAGGTCACTCGGAGAGGAA+TGG | + | chr7_3:31554447-31554466 | None:intergenic | 50.0% | |
| ATTCCTCTCCGAGTGACCTA+TGG | - | chr7_3:31554446-31554465 | Msa1101050:CDS | 50.0% | |
| TTACCATAGGTCACTCGGAG+AGG | + | chr7_3:31554452-31554471 | None:intergenic | 50.0% | |
| GTTTCCACCAACACTCACTC+TGG | + | chr7_3:31554528-31554547 | None:intergenic | 50.0% | |
| AAAGTGGGGTTACTTGGGCT+AGG | + | chr7_3:31554723-31554742 | None:intergenic | 50.0% | |
| AAACGATGGATCCCCGAAGT+GGG | + | chr7_3:31555921-31555940 | None:intergenic | 50.0% | |
| CTACTGCTACCGGCCATATG+TGG | + | chr7_3:31554368-31554387 | None:intergenic | 55.0% | |
| CACATATGGCCGGTAGCAGT+AGG | - | chr7_3:31554366-31554385 | Msa1101050:CDS | 55.0% | |
| CGGTAGCAGTAGGAATCCAC+TGG | - | chr7_3:31554376-31554395 | Msa1101050:CDS | 55.0% | |
| ATTACACGCCCTACAGCCAG+TGG | + | chr7_3:31554395-31554414 | None:intergenic | 55.0% | |
| CTGGCTGTAGGGCGTGTAAT+AGG | - | chr7_3:31554395-31554414 | Msa1101050:CDS | 55.0% | |
| GGCTGTAGGGCGTGTAATAG+GGG | - | chr7_3:31554397-31554416 | Msa1101050:CDS | 55.0% | |
| !! | CAACCCAGAGTGAGTGTTGG+TGG | - | chr7_3:31554521-31554540 | Msa1101050:CDS | 55.0% |
| TGAAAGGCCACGACCCACTT+CGG | - | chr7_3:31555905-31555924 | Msa1101050:CDS | 55.0% | |
| GAAACGATGGATCCCCGAAG+TGG | + | chr7_3:31555922-31555941 | None:intergenic | 55.0% | |
| TGTCAAAGGGAGAGTGGCTC+TGG | - | chr7_3:31556071-31556090 | Msa1101050:exon | 55.0% | |
| GAAAGGCCACGACCCACTTC+GGG | - | chr7_3:31555906-31555925 | Msa1101050:CDS | 60.0% | |
| AAAGGCCACGACCCACTTCG+GGG | - | chr7_3:31555907-31555926 | Msa1101050:CDS | 60.0% | |
| !! | CAAAGGGAGAGTGGCTCTGG+CGG | - | chr7_3:31556074-31556093 | Msa1101050:five_prime_UTR | 60.0% |
| TGGATCCCCGAAGTGGGTCG+TGG | + | chr7_3:31555915-31555934 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 31554332 | 31556112 | 31554332 | ID=Msa1101050;Name=Msa1101050 |
| chr7_3 | mRNA | 31554332 | 31556112 | 31554332 | ID=Msa1101050-mRNA-1;Parent=Msa1101050;Name=Msa1101050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=39|1|0.75|1|1|1|4|0|176 |
| chr7_3 | exon | 31554332 | 31554558 | 31554332 | ID=Msa1101050-mRNA-1:exon:6719;Parent=Msa1101050-mRNA-1 |
| chr7_3 | exon | 31555536 | 31555576 | 31555536 | ID=Msa1101050-mRNA-1:exon:6718;Parent=Msa1101050-mRNA-1 |
| chr7_3 | exon | 31555684 | 31555745 | 31555684 | ID=Msa1101050-mRNA-1:exon:6717;Parent=Msa1101050-mRNA-1 |
| chr7_3 | exon | 31555873 | 31556112 | 31555873 | ID=Msa1101050-mRNA-1:exon:6716;Parent=Msa1101050-mRNA-1 |
| chr7_3 | five_prime_UTR | 31556074 | 31556112 | 31556074 | ID=Msa1101050-mRNA-1:five_prime_utr;Parent=Msa1101050-mRNA-1 |
| chr7_3 | CDS | 31555873 | 31556073 | 31555873 | ID=Msa1101050-mRNA-1:cds;Parent=Msa1101050-mRNA-1 |
| chr7_3 | CDS | 31555684 | 31555745 | 31555684 | ID=Msa1101050-mRNA-1:cds;Parent=Msa1101050-mRNA-1 |
| chr7_3 | CDS | 31555536 | 31555576 | 31555536 | ID=Msa1101050-mRNA-1:cds;Parent=Msa1101050-mRNA-1 |
| chr7_3 | CDS | 31554332 | 31554558 | 31554332 | ID=Msa1101050-mRNA-1:cds;Parent=Msa1101050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
