AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380450 MtrunA17_Chr3g0145941 84.706 255 7 3 51 273 39 293 3.52e-150 425
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380450 AT5G17670.1 62.055 253 65 6 51 274 39 289 1.99e-98 294

Find 122 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTGTATATGCAGCAATTT+GGG 0.178912 3_1:-82109394 Msa0380450:CDS
ATTTCTGAACTTCAGGATTT+AGG 0.200146 3_1:-82107249 Msa0380450:intron
CGTCTGTATATGCAGCAATT+TGG 0.240390 3_1:-82109395 Msa0380450:CDS
AAGAGTGCCACGCCAGTAAT+TGG 0.244199 3_1:+82109544 None:intergenic
CTACATATAGAATTATTTAT+TGG 0.259229 3_1:+82107150 None:intergenic
TCCACTAGTAAAGTTGCTTT+TGG 0.259839 3_1:-82106338 Msa0380450:CDS
AACACATATTGCACATTGTT+TGG 0.265657 3_1:-82106311 Msa0380450:CDS
CATTCACCTGCTTGTATCCT+TGG 0.277029 3_1:+82108905 None:intergenic
ATAACACCAGGGACGCCTTT+TGG 0.317246 3_1:+82109320 None:intergenic
TCAGAGTTGCCTCCAGCTTC+TGG 0.320028 3_1:+82109648 None:intergenic
ACACATATTGCACATTGTTT+GGG 0.324655 3_1:-82106310 Msa0380450:CDS
AGAAAGAGAATGCAAAGAAA+TGG 0.345829 3_1:-82109928 Msa0380450:exon
ACATTGCGTGCTCGCTTTGT+TGG 0.348023 3_1:-82108928 Msa0380450:CDS
CTTGAGGTGAGGGGTGTAAC+AGG 0.358517 3_1:+82109248 None:intergenic
AGTGAGCATTTGGATGGAAT+TGG 0.358570 3_1:+82109833 None:intergenic
CGATCAAACCAGCGGCATTT+CGG 0.365710 3_1:+82109570 None:intergenic
AGAAGAAGACAGTGAGCATT+TGG 0.366919 3_1:+82109823 None:intergenic
ATATCATTGTTATTAACTCT+TGG 0.371502 3_1:-82109362 Msa0380450:CDS
GTTTGATCGATCCCAATTAC+TGG 0.372683 3_1:-82109556 Msa0380450:CDS
AGTTAATAACAATGATATAT+TGG 0.374538 3_1:+82109367 None:intergenic
TTTGTGGGCAAGCAGATGTA+TGG 0.392192 3_1:-82108764 Msa0380450:CDS
AACCAACGCCTGTCCTTGAT+TGG 0.395983 3_1:-82109520 Msa0380450:CDS
TAATAATTTCTCAGGTTTGT+GGG 0.400581 3_1:-82108779 Msa0380450:intron
CTTGGAATTGGTGTCTTTGT+TGG 0.403998 3_1:-82107198 Msa0380450:CDS
CGAGCACGCAATGTTATGTT+GGG 0.408081 3_1:+82108937 None:intergenic
CAGTCTCCTCGGGAAGTAGC+TGG 0.414848 3_1:+82108989 None:intergenic
TGTTAACTTGTGGAGCAAAA+TGG 0.418912 3_1:-82109868 Msa0380450:CDS
GAAAGAGAATGCAAAGAAAT+GGG 0.419006 3_1:-82109927 Msa0380450:exon
TCAAGATGAGCTGATACTTC+TGG 0.423594 3_1:+82108726 None:intergenic
ATAATAATTTCTCAGGTTTG+TGG 0.429279 3_1:-82108780 Msa0380450:intron
CGGTGCACTTAACATTTCCC+TGG 0.441926 3_1:-82108703 Msa0380450:CDS
GAAGTATCAGCTCATCTTGA+CGG 0.443659 3_1:-82108723 Msa0380450:CDS
CCAGGGTTAGGGAACAATTC+CGG 0.447536 3_1:-82109677 Msa0380450:intron
TATTTATTGAACCAGGGTTA+GGG 0.457822 3_1:-82109688 Msa0380450:intron
ATGACATCATCTGAACCAAC+CGG 0.461617 3_1:+82108663 None:intergenic
CCACCTCCAAAAGGCGTCCC+TGG 0.469313 3_1:-82109326 Msa0380450:CDS
GCGGCATTTCGGAGCCAATC+AGG 0.471608 3_1:+82109581 None:intergenic
CTCTCTTCAAATACCAATCA+AGG 0.471850 3_1:+82109507 None:intergenic
ATGGGTGGAGAGGAAGTAAA+GGG 0.472828 3_1:-82109909 Msa0380450:CDS
GCGAGCACGCAATGTTATGT+TGG 0.473012 3_1:+82108936 None:intergenic
CGTGCTCGCTTTGTTGGCCA+AGG 0.474939 3_1:-82108922 Msa0380450:CDS
AGAGTGCCACGCCAGTAATT+GGG 0.476971 3_1:+82109545 None:intergenic
TTGGAGATAGAACTTGGAAT+TGG 0.478928 3_1:-82107210 Msa0380450:CDS
TTTGTGGCAGGTGCCGGAAA+AGG 0.480248 3_1:-82106398 Msa0380450:intron
TACTTGTTGGAGATAGAACT+TGG 0.481501 3_1:-82107216 Msa0380450:CDS
GAGACCACTCTATCATTGAT+TGG 0.491581 3_1:-82109443 Msa0380450:CDS
TCATTGATTGGTCACTCGGC+TGG 0.494886 3_1:-82109431 Msa0380450:CDS
GATTGGCTCCGAAATGCCGC+TGG 0.497694 3_1:-82109578 Msa0380450:CDS
GACGGCGGGCCGATAGTTGT+TGG 0.503129 3_1:+82109787 None:intergenic
AATGGGTGGAGAGGAAGTAA+AGG 0.506529 3_1:-82109910 Msa0380450:CDS
GGGAGTGGTAAACTCCATCC+AGG 0.507069 3_1:+82108685 None:intergenic
CTCAGGAGGTGCTAACTCCA+TGG 0.507697 3_1:+82109463 None:intergenic
GGAATTGGTGTCTTTGTTGG+AGG 0.508876 3_1:-82107195 Msa0380450:CDS
TTGATAATAGCAGTCTCCTC+GGG 0.515621 3_1:+82108979 None:intergenic
AGGTGCACGGGTATACTTGT+TGG 0.517740 3_1:-82107229 Msa0380450:CDS
GCACTTAACATTTCCCTGGA+TGG 0.518025 3_1:-82108699 Msa0380450:CDS
TTGGTCACTCGGCTGGAGGA+TGG 0.518671 3_1:-82109424 Msa0380450:CDS
CTGGTGTTATCGATCAAACC+AGG 0.522198 3_1:-82109307 Msa0380450:CDS
AATATTGTTGAACATAATCA+AGG 0.524897 3_1:+82109279 None:intergenic
CCAATCAGGTCTTGACACCT+TGG 0.525622 3_1:+82109595 None:intergenic
TCGGCCCGCCGTCATTCTCC+CGG 0.526986 3_1:-82109777 Msa0380450:intron
ATCAATGATAGAGTGGTCTC+AGG 0.527336 3_1:+82109446 None:intergenic
TTGTGGGCAAGCAGATGTAT+GGG 0.530004 3_1:-82108763 Msa0380450:CDS
TCTATCATTGATTGGTCACT+CGG 0.533151 3_1:-82109435 Msa0380450:CDS
TTCAAATACCAATCAAGGAC+AGG 0.534115 3_1:+82109512 None:intergenic
CCTCATCATCCACCTCCAAA+AGG 0.539353 3_1:-82109335 Msa0380450:CDS
CTGCTTCCACCAACAACTAT+CGG 0.539905 3_1:-82109796 Msa0380450:CDS
TCCAAAAGCAACTTTACTAG+TGG 0.543035 3_1:+82106337 None:intergenic
TTCCGGTGACTACCAGAAGC+TGG 0.544893 3_1:-82109660 Msa0380450:CDS
TGCATACATACTTGAGGTGA+GGG 0.545124 3_1:+82109238 None:intergenic
ATGCAAAGAAATGGGTGGAG+AGG 0.546001 3_1:-82109919 Msa0380450:exon
CAAGCAGATGTATGGGGCGA+TGG 0.548229 3_1:-82108756 Msa0380450:CDS
TTTGATAATAGCAGTCTCCT+CGG 0.548689 3_1:+82108978 None:intergenic
CTGGTTTGATCGATAACACC+AGG 0.550685 3_1:+82109308 None:intergenic
GTGGCAGGTGCCGGAAAAGG+CGG 0.551698 3_1:-82106395 Msa0380450:intron
CTCCAGCTTCTGGTAGTCAC+CGG 0.551919 3_1:+82109658 None:intergenic
AGAAGCCTCTAGGTCAGTCT+TGG 0.552783 3_1:+82106361 None:intergenic
CCAAGGTGTCAAGACCTGAT+TGG 0.553014 3_1:-82109595 Msa0380450:CDS
GAAGACAGTGAGCATTTGGA+TGG 0.553333 3_1:+82109827 None:intergenic
GGATGGAGTTTACCACTCCC+CGG 0.562006 3_1:-82108682 Msa0380450:CDS
GAGACTAACCGGGAGAATGA+CGG 0.567802 3_1:+82109769 None:intergenic
AGTCTCCTCGGGAAGTAGCT+GGG 0.569738 3_1:+82108990 None:intergenic
AACATAATCAAGGAGACCCC+TGG 0.569925 3_1:+82109289 None:intergenic
ATCGATCCCAATTACTGGCG+TGG 0.571483 3_1:-82109551 Msa0380450:CDS
GGCGGGCCGATAGTTGTTGG+TGG 0.571827 3_1:+82109790 None:intergenic
CATCTGAACCAACCGGGGAG+TGG 0.574033 3_1:+82108670 None:intergenic
CGTGTCCACAGTTGTTGCCA+AGG 0.576292 3_1:-82109612 Msa0380450:CDS
ACTTCAGGATTTAGGTGCAC+GGG 0.577376 3_1:-82107241 Msa0380450:intron
ATAGACGGACGCATCTCCGC+TGG 0.578928 3_1:-82109964 None:intergenic
CACATATTGCACATTGTTTG+GGG 0.579063 3_1:-82106309 Msa0380450:CDS
AACTTCAGGATTTAGGTGCA+CGG 0.579066 3_1:-82107242 Msa0380450:intron
GGAGTTTACCACTCCCCGGT+TGG 0.585654 3_1:-82108678 Msa0380450:CDS
TGACATCATCTGAACCAACC+GGG 0.591852 3_1:+82108664 None:intergenic
TGTTGGCCAAGGATACAAGC+AGG 0.599233 3_1:-82108911 Msa0380450:intron
TACCAATCAAGGACAGGCGT+TGG 0.602600 3_1:+82109518 None:intergenic
TACTAGTGGAAGAAGCCTCT+AGG 0.602814 3_1:+82106351 None:intergenic
CGAGCAGTGATGTTAACTTG+TGG 0.605981 3_1:-82109878 Msa0380450:CDS
TTGATTGGTCACTCGGCTGG+AGG 0.606373 3_1:-82109428 Msa0380450:CDS
TGACACCTTGGCAACAACTG+TGG 0.611400 3_1:+82109607 None:intergenic
ATGCATACATACTTGAGGTG+AGG 0.617128 3_1:+82109237 None:intergenic
AGAGAATGCAAAGAAATGGG+TGG 0.618620 3_1:-82109924 Msa0380450:exon
AGCACGCAATGTTATGTTGG+GGG 0.626405 3_1:+82108939 None:intergenic
GAGCACGCAATGTTATGTTG+GGG 0.634026 3_1:+82108938 None:intergenic
TACTTCCCAGCTACTTCCCG+AGG 0.636324 3_1:-82108995 Msa0380450:CDS
GCAACTCTGAACAATAACTA+CGG 0.639683 3_1:-82109635 Msa0380450:CDS
GTGACCAATCAATGATAGAG+TGG 0.646895 3_1:+82109439 None:intergenic
AATGATAGAGTGGTCTCAGG+AGG 0.654021 3_1:+82109449 None:intergenic
TGTGGGCAAGCAGATGTATG+GGG 0.663496 3_1:-82108762 Msa0380450:CDS
TGGTGTTATCGATCAAACCA+GGG 0.665729 3_1:-82109306 Msa0380450:CDS
GACATCATCTGAACCAACCG+GGG 0.670989 3_1:+82108665 None:intergenic
CTAACCGGGAGAATGACGGC+GGG 0.672855 3_1:+82109773 None:intergenic
GGAGTGGTAAACTCCATCCA+GGG 0.679305 3_1:+82108686 None:intergenic
TCTGTATATGCAGCAATTTG+GGG 0.680712 3_1:-82109393 Msa0380450:CDS
GCATTTGGATGGAATTGGAG+AGG 0.682203 3_1:+82109838 None:intergenic
TCTATTCTACTAGTTACCAG+CGG 0.684416 3_1:+82109948 None:intergenic
GCATACATACTTGAGGTGAG+GGG 0.697105 3_1:+82109239 None:intergenic
ACTAACCGGGAGAATGACGG+CGG 0.699406 3_1:+82109772 None:intergenic
GACAACCAAGACTGACCTAG+AGG 0.703000 3_1:-82106366 Msa0380450:CDS
GGTGTTATCGATCAAACCAG+GGG 0.713378 3_1:-82109305 Msa0380450:CDS
CGGTGACTACCAGAAGCTGG+AGG 0.713933 3_1:-82109657 Msa0380450:CDS
ATTGGGATCGATCAAACCAG+CGG 0.724154 3_1:+82109562 None:intergenic
TGGTTTGATCGATAACACCA+GGG 0.758878 3_1:+82109309 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTTATTATTTA+AGG - chr3_1:82107952-82107971 Msa0380450:intron 0.0%
!! AGTTAATAACAATGATATAT+TGG + chr3_1:82106874-82106893 None:intergenic 15.0%
!! AGAAATTATTATTAGAACTT+TGG + chr3_1:82107450-82107469 None:intergenic 15.0%
!!! ATGAAAATCATTTTCTATAA+TGG + chr3_1:82107693-82107712 None:intergenic 15.0%
!!! TCTACTATTATTTTTTTGTT+AGG - chr3_1:82108793-82108812 Msa0380450:intron 15.0%
!!! CTACTATTATTTTTTTGTTA+GGG - chr3_1:82108794-82108813 Msa0380450:intron 15.0%
!! CTACATATAGAATTATTTAT+TGG + chr3_1:82109091-82109110 None:intergenic 15.0%
!!! ATTGTTATTATGTTAGTAAT+AGG - chr3_1:82109192-82109211 Msa0380450:intron 15.0%
!! AATATAATTTGAAAACTTTC+CGG + chr3_1:82109667-82109686 None:intergenic 15.0%
!!! ATATCATTGTTATTAACTCT+TGG - chr3_1:82106876-82106895 Msa0380450:intron 20.0%
!! AATATTGTTGAACATAATCA+AGG + chr3_1:82106962-82106981 None:intergenic 20.0%
!! TATAGTAAGTTAGTATGTTT+GGG + chr3_1:82107118-82107137 None:intergenic 20.0%
!!! TAGTTTTGGCTATAAATTAA+CGG + chr3_1:82107375-82107394 None:intergenic 20.0%
!! TTAATTTATAGCCAAAACTA+TGG - chr3_1:82107375-82107394 Msa0380450:intron 20.0%
!!! AGTTCTAATAATAATTTCTC+AGG - chr3_1:82107451-82107470 Msa0380450:intron 20.0%
!! TTTCATTCTTCTTGTATTTA+TGG - chr3_1:82107707-82107726 Msa0380450:intron 20.0%
!!! ATAACCTCATTGATATTTTT+AGG - chr3_1:82107807-82107826 Msa0380450:intron 20.0%
!!! TAACCTCATTGATATTTTTA+GGG - chr3_1:82107808-82107827 Msa0380450:intron 20.0%
!!! TTTGACTTTAAAACAAATTG+CGG - chr3_1:82107922-82107941 Msa0380450:intron 20.0%
!! CATATTTATATGTTAAGTTC+TGG - chr3_1:82109134-82109153 Msa0380450:intron 20.0%
!! AGAATTATACATAAACTGAA+AGG - chr3_1:82109279-82109298 Msa0380450:CDS 20.0%
!! GAATTATACATAAACTGAAA+GGG - chr3_1:82109280-82109299 Msa0380450:CDS 20.0%
!! AAATATTGAAGATAGTTCAA+TGG + chr3_1:82109513-82109532 None:intergenic 20.0%
!!! ATATTTCAATGAATTTTCTC+AGG - chr3_1:82109720-82109739 Msa0380450:intron 20.0%
!! GTTCTTTATTTATTGAACCA+GGG - chr3_1:82106544-82106563 Msa0380450:intron 25.0%
! GTATAGTAAGTTAGTATGTT+TGG + chr3_1:82107119-82107138 None:intergenic 25.0%
! CATTTCTTACTACAAAATGA+AGG - chr3_1:82107157-82107176 Msa0380450:CDS 25.0%
!! ACAAAATGAAGGTATATTCA+AGG - chr3_1:82107168-82107187 Msa0380450:CDS 25.0%
!! CAAAATGAAGGTATATTCAA+GGG - chr3_1:82107169-82107188 Msa0380450:CDS 25.0%
! ATAATAATTTCTCAGGTTTG+TGG - chr3_1:82107458-82107477 Msa0380450:intron 25.0%
! TAATAATTTCTCAGGTTTGT+GGG - chr3_1:82107459-82107478 Msa0380450:intron 25.0%
!!! TTGACTTTAAAACAAATTGC+GGG - chr3_1:82107923-82107942 Msa0380450:intron 25.0%
! GGATATGTATTTAAAAACGA+AGG - chr3_1:82107973-82107992 Msa0380450:intron 25.0%
!!! ATTTTTTCATAGGTCAACAT+AGG + chr3_1:82108037-82108056 None:intergenic 25.0%
! TATGTTGACCTATGAAAAAA+TGG - chr3_1:82108036-82108055 Msa0380450:intron 25.0%
!!! TCATGATGTTTGCTTTATTT+GGG + chr3_1:82108431-82108450 None:intergenic 25.0%
!! TTCATGATGTTTGCTTTATT+TGG + chr3_1:82108432-82108451 None:intergenic 25.0%
! AATATATACCAACCTTATTC+TGG + chr3_1:82108725-82108744 None:intergenic 25.0%
!!! GAATAAGGTTGGTATATATT+TGG - chr3_1:82108725-82108744 Msa0380450:CDS 25.0%
!!! TTTTTGAGATTGTGACTTTA+GGG - chr3_1:82108820-82108839 Msa0380450:intron 25.0%
!! TTTATGAGATTGAGAACTTT+TGG - chr3_1:82108876-82108895 Msa0380450:intron 25.0%
! TTTCCAATTCCATTAACAAA+AGG - chr3_1:82108950-82108969 Msa0380450:CDS 25.0%
! CTATATGTAGTATAGTTCAT+TGG - chr3_1:82109101-82109120 Msa0380450:intron 25.0%
!!! GCATTGGTTATTTTATATGT+TGG - chr3_1:82109313-82109332 Msa0380450:CDS 25.0%
!!! TGGTTATTTTATATGTTGGT+TGG - chr3_1:82109317-82109336 Msa0380450:CDS 25.0%
!!! ATTTTATATGTTGGTTGGTT+TGG - chr3_1:82109322-82109341 Msa0380450:CDS 25.0%
!!! TTTTATATGTTGGTTGGTTT+GGG - chr3_1:82109323-82109342 Msa0380450:CDS 25.0%
! AAGATAGTTCAATGGTATTT+GGG + chr3_1:82109505-82109524 None:intergenic 25.0%
! TCAAATTATATTACGTGCAT+AGG - chr3_1:82109675-82109694 Msa0380450:CDS 25.0%
AGAAAGAGAATGCAAAGAAA+TGG - chr3_1:82106310-82106329 Msa0380450:CDS 30.0%
GAAAGAGAATGCAAAGAAAT+GGG - chr3_1:82106311-82106330 Msa0380450:CDS 30.0%
AAAGAGAAATAGAGACTAAC+CGG + chr3_1:82106483-82106502 None:intergenic 30.0%
! GGTTCTTTATTTATTGAACC+AGG - chr3_1:82106543-82106562 Msa0380450:intron 30.0%
TTATTTATTGAACCAGGGTT+AGG - chr3_1:82106549-82106568 Msa0380450:intron 30.0%
TATTTATTGAACCAGGGTTA+GGG - chr3_1:82106550-82106569 Msa0380450:intron 30.0%
ACTCTTTCAAGGAAACATAT+AGG - chr3_1:82107044-82107063 Msa0380450:intron 30.0%
! TGGATTTGAGTTTCCAAAAA+GGG + chr3_1:82107198-82107217 None:intergenic 30.0%
! TTGGATTTGAGTTTCCAAAA+AGG + chr3_1:82107199-82107218 None:intergenic 30.0%
TTATTTGCTTGTGATAGATG+CGG - chr3_1:82107412-82107431 Msa0380450:intron 30.0%
CATCTTCAAGCTAATTAAAG+AGG + chr3_1:82107649-82107668 None:intergenic 30.0%
GATCCCTAAAAATATCAATG+AGG + chr3_1:82107814-82107833 None:intergenic 30.0%
!! TGACTTTAAAACAAATTGCG+GGG - chr3_1:82107924-82107943 Msa0380450:intron 30.0%
TTGACCTATGAAAAAATGGT+CGG - chr3_1:82108040-82108059 Msa0380450:intron 30.0%
!! GAAGAAATTTTGATCACCAA+AGG + chr3_1:82108097-82108116 None:intergenic 30.0%
CTAGACATTGCATATTTAGA+AGG + chr3_1:82108770-82108789 None:intergenic 30.0%
!!! GTTTTTGAGATTGTGACTTT+AGG - chr3_1:82108819-82108838 Msa0380450:intron 30.0%
TTCTCAATCTCATAAAGTGT+AGG + chr3_1:82108872-82108891 None:intergenic 30.0%
!! AGATTGAGAACTTTTGGTTA+GGG - chr3_1:82108882-82108901 Msa0380450:intron 30.0%
TCCTGAAGTTCAGAAATAAA+TGG + chr3_1:82108986-82109005 None:intergenic 30.0%
ATTTCTGAACTTCAGGATTT+AGG - chr3_1:82108989-82109008 Msa0380450:CDS 30.0%
TACATAAACTGAAAGGGAAA+AGG - chr3_1:82109286-82109305 Msa0380450:CDS 30.0%
ACATAAACTGAAAGGGAAAA+GGG - chr3_1:82109287-82109306 Msa0380450:CDS 30.0%
TAGAAAACTAACAAACCTCT+AGG + chr3_1:82109369-82109388 None:intergenic 30.0%
!!! AGAGGTTTGTTAGTTTTCTA+TGG - chr3_1:82109369-82109388 Msa0380450:CDS 30.0%
TGTACTATTGATACACACTA+TGG + chr3_1:82109448-82109467 None:intergenic 30.0%
GAGATTATTGGACAATAACA+AGG + chr3_1:82109483-82109502 None:intergenic 30.0%
AATGGTATTTGGGAGATTAT+TGG + chr3_1:82109495-82109514 None:intergenic 30.0%
GAAGATAGTTCAATGGTATT+TGG + chr3_1:82109506-82109525 None:intergenic 30.0%
ACTAGAATATTGTGCTATCA+TGG - chr3_1:82109563-82109582 Msa0380450:CDS 30.0%
!!! TGCTATCATGGCTTTTTTAA+AGG - chr3_1:82109575-82109594 Msa0380450:CDS 30.0%
! ACTTGCTGATATTGTATATG+TGG - chr3_1:82109638-82109657 Msa0380450:CDS 30.0%
! TGAATTTTCTCAGGCATAAT+AGG - chr3_1:82109729-82109748 Msa0380450:intron 30.0%
AACACATATTGCACATTGTT+TGG - chr3_1:82109927-82109946 Msa0380450:exon 30.0%
ACACATATTGCACATTGTTT+GGG - chr3_1:82109928-82109947 Msa0380450:exon 30.0%
TCTATTCTACTAGTTACCAG+CGG + chr3_1:82106293-82106312 None:intergenic 35.0%
!! TGTTAACTTGTGGAGCAAAA+TGG - chr3_1:82106370-82106389 Msa0380450:CDS 35.0%
AAGAGAAATAGAGACTAACC+GGG + chr3_1:82106482-82106501 None:intergenic 35.0%
GCAACTCTGAACAATAACTA+CGG - chr3_1:82106603-82106622 Msa0380450:intron 35.0%
TTCAAATACCAATCAAGGAC+AGG + chr3_1:82106729-82106748 None:intergenic 35.0%
CTCTCTTCAAATACCAATCA+AGG + chr3_1:82106734-82106753 None:intergenic 35.0%
! TCTATCATTGATTGGTCACT+CGG - chr3_1:82106803-82106822 Msa0380450:intron 35.0%
GTCTGTATATGCAGCAATTT+GGG - chr3_1:82106844-82106863 Msa0380450:intron 35.0%
TCTGTATATGCAGCAATTTG+GGG - chr3_1:82106845-82106864 Msa0380450:intron 35.0%
! GGATTTGAGTTTCCAAAAAG+GGG + chr3_1:82107197-82107216 None:intergenic 35.0%
! TTTGATAATAGCAGTCTCCT+CGG + chr3_1:82107263-82107282 None:intergenic 35.0%
ATCACAAAGCAATATTTCCC+TGG - chr3_1:82107744-82107763 Msa0380450:intron 35.0%
CAGTAGCAAACAGATTAGAA+AGG + chr3_1:82107770-82107789 None:intergenic 35.0%
! CTTTCTAATCTGTTTGCTAC+TGG - chr3_1:82107768-82107787 Msa0380450:intron 35.0%
!! GACTTTAAAACAAATTGCGG+GGG - chr3_1:82107925-82107944 Msa0380450:intron 35.0%
! TTTTCATAGGTCAACATAGG+TGG + chr3_1:82108034-82108053 None:intergenic 35.0%
TGACCTATGAAAAAATGGTC+GGG - chr3_1:82108041-82108060 Msa0380450:intron 35.0%
!!! TAACCCGACCATTTTTTCAT+AGG + chr3_1:82108047-82108066 None:intergenic 35.0%
ACAACACTTTGAGTCAACAT+TGG - chr3_1:82108152-82108171 Msa0380450:intron 35.0%
! TTAAAAGCTCTGGTTGGTAT+TGG + chr3_1:82108278-82108297 None:intergenic 35.0%
AATTAGGGAGCCAATGTAAA+GGG + chr3_1:82108316-82108335 None:intergenic 35.0%
GAAGAGCTTCCTTTCAATTA+GGG + chr3_1:82108331-82108350 None:intergenic 35.0%
TGAAGAGCTTCCTTTCAATT+AGG + chr3_1:82108332-82108351 None:intergenic 35.0%
GGTTATAGTAATCGTGTTTG+AGG + chr3_1:82108407-82108426 None:intergenic 35.0%
!! TGATGTTTGCTTTATTTGGG+TGG + chr3_1:82108428-82108447 None:intergenic 35.0%
! TCTGGTTTCGTCATAATAAC+CGG + chr3_1:82108477-82108496 None:intergenic 35.0%
!!! GAATGTGTTTTTTCCACTAG+TGG + chr3_1:82108510-82108529 None:intergenic 35.0%
TAGGGAAAGAGACAACAAAT+TGG - chr3_1:82108838-82108857 Msa0380450:intron 35.0%
!! GAGATTGAGAACTTTTGGTT+AGG - chr3_1:82108881-82108900 Msa0380450:intron 35.0%
AACAAGTTGTTGAATGCATG+TGG + chr3_1:82108932-82108951 None:intergenic 35.0%
! CTGCCTTTTGTTAATGGAAT+TGG + chr3_1:82108956-82108975 None:intergenic 35.0%
! AAGTAGCTGCCTTTTGTTAA+TGG + chr3_1:82108962-82108981 None:intergenic 35.0%
!! GCCATTTATTTCTGAACTTC+AGG - chr3_1:82108982-82109001 Msa0380450:CDS 35.0%
! TACTTGTTGGAGATAGAACT+TGG - chr3_1:82109022-82109041 Msa0380450:intron 35.0%
TTGGAGATAGAACTTGGAAT+TGG - chr3_1:82109028-82109047 Msa0380450:intron 35.0%
ATTAATGTAACCACCTCTGT+TGG - chr3_1:82109414-82109433 Msa0380450:CDS 35.0%
TACAATATCAGCAAGTATGC+CGG + chr3_1:82109634-82109653 None:intergenic 35.0%
GATATTGTATATGTGGCTAC+CGG - chr3_1:82109645-82109664 Msa0380450:CDS 35.0%
CAAGCAATAGTGATAGATGA+TGG - chr3_1:82109792-82109811 Msa0380450:CDS 35.0%
! GATAGATGATGGTACTTGAA+TGG - chr3_1:82109803-82109822 Msa0380450:CDS 35.0%
!! TCCACTAGTAAAGTTGCTTT+TGG - chr3_1:82109900-82109919 Msa0380450:CDS 35.0%
TCCAAAAGCAACTTTACTAG+TGG + chr3_1:82109904-82109923 None:intergenic 35.0%
CACATATTGCACATTGTTTG+GGG - chr3_1:82109929-82109948 Msa0380450:exon 35.0%
AGAGAATGCAAAGAAATGGG+TGG - chr3_1:82106314-82106333 Msa0380450:CDS 40.0%
AGTGAGCATTTGGATGGAAT+TGG + chr3_1:82106408-82106427 None:intergenic 40.0%
AGAAGAAGACAGTGAGCATT+TGG + chr3_1:82106418-82106437 None:intergenic 40.0%
AACCAAATGAATGCGATGTG+AGG + chr3_1:82106527-82106546 None:intergenic 40.0%
GTTTGATCGATCCCAATTAC+TGG - chr3_1:82106682-82106701 Msa0380450:intron 40.0%
!! AGTTGATGATGCTGTTCAAG+AGG - chr3_1:82106752-82106771 Msa0380450:intron 40.0%
ATCAATGATAGAGTGGTCTC+AGG + chr3_1:82106795-82106814 None:intergenic 40.0%
GAGACCACTCTATCATTGAT+TGG - chr3_1:82106795-82106814 Msa0380450:intron 40.0%
GTGACCAATCAATGATAGAG+TGG + chr3_1:82106802-82106821 None:intergenic 40.0%
CGTCTGTATATGCAGCAATT+TGG - chr3_1:82106843-82106862 Msa0380450:intron 40.0%
TGGTTTGATCGATAACACCA+GGG + chr3_1:82106932-82106951 None:intergenic 40.0%
!! TGGTGTTATCGATCAAACCA+GGG - chr3_1:82106932-82106951 Msa0380450:intron 40.0%
TGCATACATACTTGAGGTGA+GGG + chr3_1:82107003-82107022 None:intergenic 40.0%
ATGCATACATACTTGAGGTG+AGG + chr3_1:82107004-82107023 None:intergenic 40.0%
CTGCTATGCATACATACTTG+AGG + chr3_1:82107009-82107028 None:intergenic 40.0%
CTCAAGTATGTATGCATAGC+AGG - chr3_1:82107007-82107026 Msa0380450:intron 40.0%
AGTATGTATGCATAGCAGGA+AGG - chr3_1:82107011-82107030 Msa0380450:intron 40.0%
GTAACACACACACTCTTTCA+AGG - chr3_1:82107033-82107052 Msa0380450:intron 40.0%
GTATCTGCTTCCTACTTTGA+GGG + chr3_1:82107073-82107092 None:intergenic 40.0%
AGTATCTGCTTCCTACTTTG+AGG + chr3_1:82107074-82107093 None:intergenic 40.0%
ATACTCAACAGCACCTACAA+GGG - chr3_1:82107089-82107108 Msa0380450:intron 40.0%
! TTGATAATAGCAGTCTCCTC+GGG + chr3_1:82107262-82107281 None:intergenic 40.0%
! CAGTTTGCACACCATAGTTT+TGG + chr3_1:82107389-82107408 None:intergenic 40.0%
TCAAGATGAGCTGATACTTC+TGG + chr3_1:82107515-82107534 None:intergenic 40.0%
! GAAGTATCAGCTCATCTTGA+CGG - chr3_1:82107515-82107534 Msa0380450:intron 40.0%
ATGACATCATCTGAACCAAC+CGG + chr3_1:82107578-82107597 None:intergenic 40.0%
CAGATGATGTCATTAGACCA+TGG - chr3_1:82107585-82107604 Msa0380450:intron 40.0%
GATGTCATTAGACCATGGTA+TGG - chr3_1:82107590-82107609 Msa0380450:intron 40.0%
TCCATTGTTCCAACACATCA+GGG + chr3_1:82107619-82107638 None:intergenic 40.0%
ATCCATTGTTCCAACACATC+AGG + chr3_1:82107620-82107639 None:intergenic 40.0%
CAAACAGATTAGAAAGGCCA+GGG + chr3_1:82107764-82107783 None:intergenic 40.0%
TGCTACTGGTATGTCTATAG+AGG - chr3_1:82107782-82107801 Msa0380450:intron 40.0%
CATATGGCAGATCTTGGAAT+TGG + chr3_1:82108124-82108143 None:intergenic 40.0%
!! AGTGTTGTTTCGTGCACATA+TGG + chr3_1:82108140-82108159 None:intergenic 40.0%
AGGTCAAAGTGGAATGATGT+AGG + chr3_1:82108240-82108259 None:intergenic 40.0%
! AGTGGTTTAAAAGCTCTGGT+TGG + chr3_1:82108284-82108303 None:intergenic 40.0%
CAATTAGGGAGCCAATGTAA+AGG + chr3_1:82108317-82108336 None:intergenic 40.0%
!! ACATTGGCTCCCTAATTGAA+AGG - chr3_1:82108319-82108338 Msa0380450:intron 40.0%
! TTTTCCAGAACTCCATCATC+CGG - chr3_1:82108455-82108474 Msa0380450:intron 40.0%
TCGTCATAATAACCGGATGA+TGG + chr3_1:82108470-82108489 None:intergenic 40.0%
!!! GTGTTTTTTCCACTAGTGGA+TGG + chr3_1:82108506-82108525 None:intergenic 40.0%
ACAATGCAACAATGAGGTGA+GGG - chr3_1:82108570-82108589 Msa0380450:intron 40.0%
ATGTCACACTCACCAGAATA+AGG - chr3_1:82108710-82108729 Msa0380450:CDS 40.0%
GGAAAGAGACAACAAATTGG+AGG - chr3_1:82108841-82108860 Msa0380450:intron 40.0%
AATGCATGTGGAGTTTCCAT+GGG + chr3_1:82108920-82108939 None:intergenic 40.0%
AACTTCAGGATTTAGGTGCA+CGG - chr3_1:82108996-82109015 Msa0380450:CDS 40.0%
! CTTGGAATTGGTGTCTTTGT+TGG - chr3_1:82109040-82109059 Msa0380450:intron 40.0%
AACTGCTATGTTACTGCTGT+AGG - chr3_1:82109251-82109270 Msa0380450:CDS 40.0%
TAAACTGAAAGGGAAAAGGG+AGG - chr3_1:82109290-82109309 Msa0380450:CDS 40.0%
AAACTGAAAGGGAAAAGGGA+GGG - chr3_1:82109291-82109310 Msa0380450:CDS 40.0%
TATGGTTATTCTGCCAACAG+AGG + chr3_1:82109430-82109449 None:intergenic 40.0%
CTGTTATTCTCATGTTGCAC+CGG - chr3_1:82109612-82109631 Msa0380450:CDS 40.0%
! GGCAGCATTGTTAGATTTTG+TGG - chr3_1:82109824-82109843 Msa0380450:CDS 40.0%
! GCATTGTTAGATTTTGTGGC+AGG - chr3_1:82109828-82109847 Msa0380450:CDS 40.0%
ATGCAAAGAAATGGGTGGAG+AGG - chr3_1:82106319-82106338 Msa0380450:CDS 45.0%
AATGGGTGGAGAGGAAGTAA+AGG - chr3_1:82106328-82106347 Msa0380450:CDS 45.0%
ATGGGTGGAGAGGAAGTAAA+GGG - chr3_1:82106329-82106348 Msa0380450:CDS 45.0%
! CGAGCAGTGATGTTAACTTG+TGG - chr3_1:82106360-82106379 Msa0380450:CDS 45.0%
GCATTTGGATGGAATTGGAG+AGG + chr3_1:82106403-82106422 None:intergenic 45.0%
GAAGACAGTGAGCATTTGGA+TGG + chr3_1:82106414-82106433 None:intergenic 45.0%
CTGCTTCCACCAACAACTAT+CGG - chr3_1:82106442-82106461 Msa0380450:intron 45.0%
CTCCTCACATCGCATTCATT+TGG - chr3_1:82106522-82106541 Msa0380450:intron 45.0%
ATTGGGATCGATCAAACCAG+CGG + chr3_1:82106679-82106698 None:intergenic 45.0%
AATGATAGAGTGGTCTCAGG+AGG + chr3_1:82106792-82106811 None:intergenic 45.0%
!! TTTTGGAGGTGGATGATGAG+GGG + chr3_1:82106904-82106923 None:intergenic 45.0%
!! CTTTTGGAGGTGGATGATGA+GGG + chr3_1:82106905-82106924 None:intergenic 45.0%
! CTGGTTTGATCGATAACACC+AGG + chr3_1:82106933-82106952 None:intergenic 45.0%
!! CTGGTGTTATCGATCAAACC+AGG - chr3_1:82106931-82106950 Msa0380450:intron 45.0%
! GGTGTTATCGATCAAACCAG+GGG - chr3_1:82106933-82106952 Msa0380450:intron 45.0%
AACATAATCAAGGAGACCCC+TGG + chr3_1:82106952-82106971 None:intergenic 45.0%
GCATACATACTTGAGGTGAG+GGG + chr3_1:82107002-82107021 None:intergenic 45.0%
ATATAGGCAGCCCTCAAAGT+AGG - chr3_1:82107060-82107079 Msa0380450:intron 45.0%
GATACTCAACAGCACCTACA+AGG - chr3_1:82107088-82107107 Msa0380450:intron 45.0%
TATGTTTGGGCTTCCCTTGT+AGG + chr3_1:82107105-82107124 None:intergenic 45.0%
! TATTCAAGGGCTCCCCTTTT+TGG - chr3_1:82107182-82107201 Msa0380450:CDS 45.0%
!! AGTAGCTGGGAAGTATCTGT+AGG + chr3_1:82107238-82107257 None:intergenic 45.0%
TGTTATGTTGGGGGAAGAAG+TGG + chr3_1:82107293-82107312 None:intergenic 45.0%
AGCACGCAATGTTATGTTGG+GGG + chr3_1:82107302-82107321 None:intergenic 45.0%
GAGCACGCAATGTTATGTTG+GGG + chr3_1:82107303-82107322 None:intergenic 45.0%
CGAGCACGCAATGTTATGTT+GGG + chr3_1:82107304-82107323 None:intergenic 45.0%
CATTCACCTGCTTGTATCCT+TGG + chr3_1:82107336-82107355 None:intergenic 45.0%
TTTGTGGGCAAGCAGATGTA+TGG - chr3_1:82107474-82107493 Msa0380450:intron 45.0%
TTGTGGGCAAGCAGATGTAT+GGG - chr3_1:82107475-82107494 Msa0380450:intron 45.0%
GCACTTAACATTTCCCTGGA+TGG - chr3_1:82107539-82107558 Msa0380450:intron 45.0%
TGACATCATCTGAACCAACC+GGG + chr3_1:82107577-82107596 None:intergenic 45.0%
CCATTGTTCCAACACATCAG+GGG + chr3_1:82107618-82107637 None:intergenic 45.0%
GCAAACAGATTAGAAAGGCC+AGG + chr3_1:82107765-82107784 None:intergenic 45.0%
TCATAGGTCAACATAGGTGG+TGG + chr3_1:82108031-82108050 None:intergenic 45.0%
GGTCGGGTTATTGATACCAT+TGG - chr3_1:82108057-82108076 Msa0380450:intron 45.0%
GGAAACGTCATTGTCACCAA+TGG + chr3_1:82108076-82108095 None:intergenic 45.0%
GGTGACAATGACGTTTCCTT+TGG - chr3_1:82108078-82108097 Msa0380450:intron 45.0%
TGTGTGGGTTCAATGAAGCA+TGG + chr3_1:82108201-82108220 None:intergenic 45.0%
ATTGAACCCACACAACACCT+CGG - chr3_1:82108207-82108226 Msa0380450:intron 45.0%
CAAAGTGGAATGATGTAGGC+AGG + chr3_1:82108236-82108255 None:intergenic 45.0%
! TTTGGTGGTTGAGGTCAAAG+TGG + chr3_1:82108251-82108270 None:intergenic 45.0%
!! ATTGGTGCTTTTGGTGGTTG+AGG + chr3_1:82108260-82108279 None:intergenic 45.0%
!!! GTTGGTATTGGTGCTTTTGG+TGG + chr3_1:82108266-82108285 None:intergenic 45.0%
!!! CTGGTTGGTATTGGTGCTTT+TGG + chr3_1:82108269-82108288 None:intergenic 45.0%
TGGGAGTGGTTTAAAAGCTC+TGG + chr3_1:82108288-82108307 None:intergenic 45.0%
TCCCACTTCTCCCTTTACAT+TGG - chr3_1:82108303-82108322 Msa0380450:intron 45.0%
GCCAATGTAAAGGGAGAAGT+GGG + chr3_1:82108307-82108326 None:intergenic 45.0%
AGCCAATGTAAAGGGAGAAG+TGG + chr3_1:82108308-82108327 None:intergenic 45.0%
! GTTTCAGGTGTGAACTTGGA+TGG + chr3_1:82108357-82108376 None:intergenic 45.0%
! TGTGGTTTCAGGTGTGAACT+TGG + chr3_1:82108361-82108380 None:intergenic 45.0%
AAGTTCACACCTGAAACCAC+AGG - chr3_1:82108360-82108379 Msa0380450:intron 45.0%
CCACAGGACCTTCTCTATAA+CGG - chr3_1:82108376-82108395 Msa0380450:intron 45.0%
AGGTCTTGCCGTTATAGAGA+AGG + chr3_1:82108387-82108406 None:intergenic 45.0%
!! ATAACCGGATGATGGAGTTC+TGG + chr3_1:82108462-82108481 None:intergenic 45.0%
! TTTCCACTAGTGGATGGTAC+TGG + chr3_1:82108500-82108519 None:intergenic 45.0%
TCTGCTGTGAAAGCTCATTG+TGG + chr3_1:82108532-82108551 None:intergenic 45.0%
TGCCACACAATGCAACAATG+AGG - chr3_1:82108564-82108583 Msa0380450:intron 45.0%
CACCTCATTGTTGCATTGTG+TGG + chr3_1:82108569-82108588 None:intergenic 45.0%
CACAATGCAACAATGAGGTG+AGG - chr3_1:82108569-82108588 Msa0380450:intron 45.0%
ATGGCAAATGACATGATGGC+GGG + chr3_1:82108638-82108657 None:intergenic 45.0%
GATGGCAAATGACATGATGG+CGG + chr3_1:82108639-82108658 None:intergenic 45.0%
CAGGATGGCAAATGACATGA+TGG + chr3_1:82108642-82108661 None:intergenic 45.0%
! CATCATGTCATTTGCCATCC+TGG - chr3_1:82108640-82108659 Msa0380450:intron 45.0%
TATGTAGTGAAGCAAGAGCC+AGG + chr3_1:82108661-82108680 None:intergenic 45.0%
GACAAACAGAGGAAGAGTGA+GGG + chr3_1:82108684-82108703 None:intergenic 45.0%
TTCTGGTGAGTGTGACATGT+CGG + chr3_1:82108708-82108727 None:intergenic 45.0%
CACACTCACCAGAATAAGGT+TGG - chr3_1:82108714-82108733 Msa0380450:CDS 45.0%
GAATGCATGTGGAGTTTCCA+TGG + chr3_1:82108921-82108940 None:intergenic 45.0%
ACTTCAGGATTTAGGTGCAC+GGG - chr3_1:82108997-82109016 Msa0380450:CDS 45.0%
! GGAATTGGTGTCTTTGTTGG+AGG - chr3_1:82109043-82109062 Msa0380450:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG - chr3_1:82109351-82109370 Msa0380450:CDS 45.0%
CGGTGCAACATGAGAATAAC+AGG + chr3_1:82109614-82109633 None:intergenic 45.0%
AGGTTACGTCCAAAAGCAGT+TGG - chr3_1:82109749-82109768 Msa0380450:intron 45.0%
GTCCAAAAGCAGTTGGACAT+AGG - chr3_1:82109756-82109775 Msa0380450:intron 45.0%
! GACCTATGTCCAACTGCTTT+TGG + chr3_1:82109761-82109780 None:intergenic 45.0%
! TTAGATTTTGTGGCAGGTGC+CGG - chr3_1:82109834-82109853 Msa0380450:CDS 45.0%
TACTAGTGGAAGAAGCCTCT+AGG + chr3_1:82109890-82109909 None:intergenic 45.0%
GAGACTAACCGGGAGAATGA+CGG + chr3_1:82106472-82106491 None:intergenic 50.0%
CCAGGGTTAGGGAACAATTC+CGG - chr3_1:82106561-82106580 Msa0380450:intron 50.0%
TGACACCTTGGCAACAACTG+TGG + chr3_1:82106634-82106653 None:intergenic 50.0%
CCAATCAGGTCTTGACACCT+TGG + chr3_1:82106646-82106665 None:intergenic 50.0%
! CCAAGGTGTCAAGACCTGAT+TGG - chr3_1:82106643-82106662 Msa0380450:intron 50.0%
CGATCAAACCAGCGGCATTT+CGG + chr3_1:82106671-82106690 None:intergenic 50.0%
ATCGATCCCAATTACTGGCG+TGG - chr3_1:82106687-82106706 Msa0380450:intron 50.0%
! AGAGTGCCACGCCAGTAATT+GGG + chr3_1:82106696-82106715 None:intergenic 50.0%
!! AAGAGTGCCACGCCAGTAAT+TGG + chr3_1:82106697-82106716 None:intergenic 50.0%
AACCAACGCCTGTCCTTGAT+TGG - chr3_1:82106718-82106737 Msa0380450:intron 50.0%
TACCAATCAAGGACAGGCGT+TGG + chr3_1:82106723-82106742 None:intergenic 50.0%
TGATGCTGTTCAAGAGGCCA+TGG - chr3_1:82106758-82106777 Msa0380450:intron 50.0%
! TCATTGATTGGTCACTCGGC+TGG - chr3_1:82106807-82106826 Msa0380450:intron 50.0%
!! CCTTTTGGAGGTGGATGATG+AGG + chr3_1:82106906-82106925 None:intergenic 50.0%
CCTCATCATCCACCTCCAAA+AGG - chr3_1:82106903-82106922 Msa0380450:intron 50.0%
! ATAACACCAGGGACGCCTTT+TGG + chr3_1:82106921-82106940 None:intergenic 50.0%
! AGGAAGTGCAGCTCAGCATT+TGG + chr3_1:82107218-82107237 None:intergenic 50.0%
GCGAGCACGCAATGTTATGT+TGG + chr3_1:82107305-82107324 None:intergenic 50.0%
ACATTGCGTGCTCGCTTTGT+TGG - chr3_1:82107310-82107329 Msa0380450:intron 50.0%
TGTTGGCCAAGGATACAAGC+AGG - chr3_1:82107327-82107346 Msa0380450:intron 50.0%
TGTGGGCAAGCAGATGTATG+GGG - chr3_1:82107476-82107495 Msa0380450:intron 50.0%
CGGTGCACTTAACATTTCCC+TGG - chr3_1:82107535-82107554 Msa0380450:intron 50.0%
GGAGTGGTAAACTCCATCCA+GGG + chr3_1:82107555-82107574 None:intergenic 50.0%
GACATCATCTGAACCAACCG+GGG + chr3_1:82107576-82107595 None:intergenic 50.0%
ACATCAGGGGAACCATACCA+TGG + chr3_1:82107605-82107624 None:intergenic 50.0%
GTATGGTTCCCCTGATGTGT+TGG - chr3_1:82107607-82107626 Msa0380450:intron 50.0%
CCCCTGATGTGTTGGAACAA+TGG - chr3_1:82107615-82107634 Msa0380450:intron 50.0%
!! GTCAACATAGGTGGTGGATG+GGG + chr3_1:82108025-82108044 None:intergenic 50.0%
!! GGTCAACATAGGTGGTGGAT+GGG + chr3_1:82108026-82108045 None:intergenic 50.0%
!! AGGTCAACATAGGTGGTGGA+TGG + chr3_1:82108027-82108046 None:intergenic 50.0%
CGTGCACATATGGCAGATCT+TGG + chr3_1:82108130-82108149 None:intergenic 50.0%
! CAACATTGGAGTGCCAAGTG+AGG - chr3_1:82108166-82108185 Msa0380450:intron 50.0%
TTGAACCCACACAACACCTC+GGG - chr3_1:82108208-82108227 Msa0380450:intron 50.0%
TGTAAAGGGAGAAGTGGGAG+TGG + chr3_1:82108302-82108321 None:intergenic 50.0%
AGAGAAGGTCCTGTGGTTTC+AGG + chr3_1:82108372-82108391 None:intergenic 50.0%
CCGTTATAGAGAAGGTCCTG+TGG + chr3_1:82108379-82108398 None:intergenic 50.0%
!! ACTAGTGGATGGTACTGGTC+TGG + chr3_1:82108495-82108514 None:intergenic 50.0%
AGACCAGTACCATCCACTAG+TGG - chr3_1:82108494-82108513 Msa0380450:intron 50.0%
TAGTGAAGCAAGAGCCAGGA+TGG + chr3_1:82108657-82108676 None:intergenic 50.0%
CGACAAACAGAGGAAGAGTG+AGG + chr3_1:82108685-82108704 None:intergenic 50.0%
AGGGAAGCTTTCACTTCCCA+TGG - chr3_1:82108901-82108920 Msa0380450:intron 50.0%
AGGTGCACGGGTATACTTGT+TGG - chr3_1:82109009-82109028 Msa0380450:intron 50.0%
! AAAGGGAAAAGGGAGGGCAT+TGG - chr3_1:82109297-82109316 Msa0380450:CDS 50.0%
!! TGGTTGGTTTGGGAGAGACT+AGG - chr3_1:82109333-82109352 Msa0380450:CDS 50.0%
GGTTATTCTGCCAACAGAGG+TGG + chr3_1:82109427-82109446 None:intergenic 50.0%
GACAACCAAGACTGACCTAG+AGG - chr3_1:82109872-82109891 Msa0380450:CDS 50.0%
AGAAGCCTCTAGGTCAGTCT+TGG + chr3_1:82109880-82109899 None:intergenic 50.0%
ACTAACCGGGAGAATGACGG+CGG + chr3_1:82106469-82106488 None:intergenic 55.0%
CCGGAATTGTTCCCTAACCC+TGG + chr3_1:82106564-82106583 None:intergenic 55.0%
TTCCGGTGACTACCAGAAGC+TGG - chr3_1:82106578-82106597 Msa0380450:intron 55.0%
CTCCAGCTTCTGGTAGTCAC+CGG + chr3_1:82106583-82106602 None:intergenic 55.0%
TCAGAGTTGCCTCCAGCTTC+TGG + chr3_1:82106593-82106612 None:intergenic 55.0%
CGTGTCCACAGTTGTTGCCA+AGG - chr3_1:82106626-82106645 Msa0380450:intron 55.0%
!! CTCAGGAGGTGCTAACTCCA+TGG + chr3_1:82106778-82106797 None:intergenic 55.0%
! TTGATTGGTCACTCGGCTGG+AGG - chr3_1:82106810-82106829 Msa0380450:intron 55.0%
! CTTGAGGTGAGGGGTGTAAC+AGG + chr3_1:82106993-82107012 None:intergenic 55.0%
TACTTCCCAGCTACTTCCCG+AGG - chr3_1:82107243-82107262 Msa0380450:intron 55.0%
AGTCTCCTCGGGAAGTAGCT+GGG + chr3_1:82107251-82107270 None:intergenic 55.0%
CAAGCAGATGTATGGGGCGA+TGG - chr3_1:82107482-82107501 Msa0380450:intron 55.0%
GGGAGTGGTAAACTCCATCC+AGG + chr3_1:82107556-82107575 None:intergenic 55.0%
GGATGGAGTTTACCACTCCC+CGG - chr3_1:82107556-82107575 Msa0380450:intron 55.0%
!! ACATAGGTGGTGGATGGGGA+AGG + chr3_1:82108021-82108040 None:intergenic 55.0%
GACATGTCGGCGACAAACAG+AGG + chr3_1:82108695-82108714 None:intergenic 55.0%
!! TTTGTGGCAGGTGCCGGAAA+AGG - chr3_1:82109840-82109859 Msa0380450:CDS 55.0%
CTAACCGGGAGAATGACGGC+GGG + chr3_1:82106468-82106487 None:intergenic 60.0%
CGGTGACTACCAGAAGCTGG+AGG - chr3_1:82106581-82106600 Msa0380450:intron 60.0%
GCGGCATTTCGGAGCCAATC+AGG + chr3_1:82106660-82106679 None:intergenic 60.0%
! GATTGGCTCCGAAATGCCGC+TGG - chr3_1:82106660-82106679 Msa0380450:intron 60.0%
TTGGTCACTCGGCTGGAGGA+TGG - chr3_1:82106814-82106833 Msa0380450:intron 60.0%
! ACACCAGGGACGCCTTTTGG+AGG + chr3_1:82106918-82106937 None:intergenic 60.0%
CAGTCTCCTCGGGAAGTAGC+TGG + chr3_1:82107252-82107271 None:intergenic 60.0%
! CGTGCTCGCTTTGTTGGCCA+AGG - chr3_1:82107316-82107335 Msa0380450:intron 60.0%
GGAGTTTACCACTCCCCGGT+TGG - chr3_1:82107560-82107579 Msa0380450:intron 60.0%
CATCTGAACCAACCGGGGAG+TGG + chr3_1:82107571-82107590 None:intergenic 60.0%
ATGGCAGAGCTCGCCTCACT+TGG + chr3_1:82108182-82108201 None:intergenic 60.0%
!! AGGAGCCCGAGGTGTTGTGT+GGG + chr3_1:82108216-82108235 None:intergenic 60.0%
ATGATGTAGGCAGGAGCCCG+AGG + chr3_1:82108227-82108246 None:intergenic 60.0%
TGGCGGGAGTGAACGATCAG+CGG + chr3_1:82108622-82108641 None:intergenic 60.0%
! TGTCAACGCGCCGCCTTTTC+CGG + chr3_1:82109856-82109875 None:intergenic 60.0%
GGCGGGCCGATAGTTGTTGG+TGG + chr3_1:82106451-82106470 None:intergenic 65.0%
GACGGCGGGCCGATAGTTGT+TGG + chr3_1:82106454-82106473 None:intergenic 65.0%
!! CCAGGGACGCCTTTTGGAGG+TGG + chr3_1:82106915-82106934 None:intergenic 65.0%
!! CCACCTCCAAAAGGCGTCCC+TGG - chr3_1:82106912-82106931 Msa0380450:intron 65.0%
GAAGGACGAGCGAGAGAGGG+AGG + chr3_1:82108003-82108022 None:intergenic 65.0%
GGGGAAGGACGAGCGAGAGA+GGG + chr3_1:82108006-82108025 None:intergenic 65.0%
TGGGGAAGGACGAGCGAGAG+AGG + chr3_1:82108007-82108026 None:intergenic 65.0%
!! CAGGAGCCCGAGGTGTTGTG+TGG + chr3_1:82108217-82108236 None:intergenic 65.0%
CGGGAGTGAACGATCAGCGG+CGG + chr3_1:82108619-82108638 None:intergenic 65.0%
!! GTGGCAGGTGCCGGAAAAGG+CGG - chr3_1:82109843-82109862 Msa0380450:CDS 65.0%
TCGGCCCGCCGTCATTCTCC+CGG - chr3_1:82106461-82106480 Msa0380450:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82106283 82109977 82106283 ID=Msa0380450;Name=Msa0380450
chr3_1 mRNA 82106283 82109977 82106283 ID=Msa0380450-mRNA-1;Parent=Msa0380450;Name=Msa0380450-mRNA-1;_AED=0.32;_eAED=0.32;_QI=46|0.16|0|1|0.5|0.42|7|0|350
chr3_1 exon 82106283 82106410 82106283 ID=Msa0380450-mRNA-1:exon:20974;Parent=Msa0380450-mRNA-1
chr3_1 exon 82107151 82107256 82107151 ID=Msa0380450-mRNA-1:exon:20973;Parent=Msa0380450-mRNA-1
chr3_1 exon 82108668 82108787 82108668 ID=Msa0380450-mRNA-1:exon:20972;Parent=Msa0380450-mRNA-1
chr3_1 exon 82108912 82109018 82108912 ID=Msa0380450-mRNA-1:exon:20971;Parent=Msa0380450-mRNA-1
chr3_1 exon 82109249 82109486 82109249 ID=Msa0380450-mRNA-1:exon:20970;Parent=Msa0380450-mRNA-1
chr3_1 exon 82109496 82109695 82109496 ID=Msa0380450-mRNA-1:exon:20969;Parent=Msa0380450-mRNA-1
chr3_1 exon 82109778 82109977 82109778 ID=Msa0380450-mRNA-1:exon:20968;Parent=Msa0380450-mRNA-1
chr3_1 five_prime_UTR 82109932 82109977 82109932 ID=Msa0380450-mRNA-1:five_prime_utr;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82109778 82109931 82109778 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82109496 82109695 82109496 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82109249 82109486 82109249 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82108912 82109018 82108912 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82108668 82108787 82108668 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82107151 82107256 82107151 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
chr3_1 CDS 82106283 82106410 82106283 ID=Msa0380450-mRNA-1:cds;Parent=Msa0380450-mRNA-1
Gene Sequence

>Msa0380450

ATGGGTGGAGAGGAAGTAAAGGGTAGCAGAGCGAGCAGTGATGTTAACTTGTGGAGCAAAATGGATGTCAGCCTCTCCAATTCCATCCAAATGCTCACTGTCTTCTTCTTCATCTGCTTCCACCAACAACTATCGGCCCGCCGTCATTCTCCCGGGTTAGGGAACAATTCCGGTGACTACCAGAAGCTGGAGGCAACTCTGAACAATAACTACGGCGTGTCCACAGTTGTTGCCAAGGTGTCAAGACCTGATTGGCTCCGAAATGCCGCTGGTTTGATCGATCCCAATTACTGGCGTGGCACTCTTCAACCAACGCCTGTCCTTGATTGGTATTTGAAGAGAGTTGATGATGCTGCCATGGAGTTAGCACCTCCTGAGACCACTCTATCATTGATTGGTCACTCGGCTGGAGGATGGCTTGCGCGTCTGTATATGCAGCAATTTGGGGTGTCCAATATATCATTGTTATTAACTCTTGGAACCCCTCATCATCCACCTCCAAAAGGCGTCCCTGGTGTTATCGATCAAACCAGGGGTCTCCTTGATTATGTTCAACAATATTGCTCTAAACCTGTTACACCCCTCACCTCAAATACTTCCCAGCTACTTCCCGAGGAGACTGCTATTATCAAAGCTGCAACCACTTCTTCCCCCAACATAACATTGCGTGCTCGCTTTGTTGGCCAAGGATACAAGCAGGTTTGTGGGCAAGCAGATGTATGGGGCGATGGTGTTGTGCCAGAAGTATCAGCTCATCTTGACGGTGCACTTAACATTTCCCTGGATGGAGTTTACCACTCCCCGGTTGGTTCAGATGATGATTTAGGTGCACGGGTATACTTGTTGGAGATAGAACTTGGAATTGGTGTCTTTGTTGGAGGTAGAACTCTCACTAACTTGCTGCCAATAAATAATTCTATATGTAGTGCCGGAAAAGGCGGCGCGTTGACAACCAAGACTGACCTAGAGGCTTCTTCCACTAGTAAAGTTGCTTTTGGAAAGAACACATATTGCACATTGTTTGGGGTTGACATGCTGTTGCTACTAAGATGA

Protein sequence

>Msa0380450

MGGEEVKGSRASSDVNLWSKMDVSLSNSIQMLTVFFFICFHQQLSARRHSPGLGNNSGDYQKLEATLNNNYGVSTVVAKVSRPDWLRNAAGLIDPNYWRGTLQPTPVLDWYLKRVDDAAMELAPPETTLSLIGHSAGGWLARLYMQQFGVSNISLLLTLGTPHHPPPKGVPGVIDQTRGLLDYVQQYCSKPVTPLTSNTSQLLPEETAIIKAATTSSPNITLRARFVGQGYKQVCGQADVWGDGVVPEVSAHLDGALNISLDGVYHSPVGSDDDLGARVYLLEIELGIGVFVGGRTLTNLLPINNSICSAGKGGALTTKTDLEASSTSKVAFGKNTYCTLFGVDMLLLLR*