Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045940 | XP_003621060.1 | 88.372 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 5.12e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045940 | sp|Q93WI9|HD3A_ORYSJ | 64.706 | 170 | 59 | 1 | 2 | 171 | 9 | 177 | 6.79e-80 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045940 | F8T7T3 | 88.372 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 2.45e-109 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007810 | Msa1045940 | 0.838891 | 2.196542e-57 | -8.615850e-47 |
| Msa0011060 | Msa1045940 | 0.810051 | 1.396949e-50 | -8.615850e-47 |
| Msa0011920 | Msa1045940 | 0.820210 | 7.735571e-53 | -8.615850e-47 |
| Msa0032890 | Msa1045940 | 0.828005 | 1.143128e-54 | -8.615850e-47 |
| Msa0032930 | Msa1045940 | 0.807079 | 6.023162e-50 | -8.615850e-47 |
| Msa0037650 | Msa1045940 | 0.827681 | 1.367598e-54 | -8.615850e-47 |
| Msa0049670 | Msa1045940 | 0.806623 | 7.518030e-50 | -8.615850e-47 |
| Msa0053260 | Msa1045940 | 0.822207 | 2.680685e-53 | -8.615850e-47 |
| Msa0056220 | Msa1045940 | 0.806619 | 7.532744e-50 | -8.615850e-47 |
| Msa0056230 | Msa1045940 | 0.828936 | 6.813917e-55 | -8.615850e-47 |
| Msa0066890 | Msa1045940 | 0.801422 | 9.072994e-49 | -8.615850e-47 |
| Msa0074860 | Msa1045940 | 0.802117 | 6.531808e-49 | -8.615850e-47 |
| Msa0080060 | Msa1045940 | 0.831950 | 1.248230e-55 | -8.615850e-47 |
| Msa0081700 | Msa1045940 | 0.823298 | 1.493745e-53 | -8.615850e-47 |
| Msa0091300 | Msa1045940 | 0.828684 | 7.840604e-55 | -8.615850e-47 |
| Msa0098500 | Msa1045940 | 0.821978 | 3.028593e-53 | -8.615850e-47 |
| Msa0098750 | Msa1045940 | 0.817820 | 2.705018e-52 | -8.615850e-47 |
| Msa0110350 | Msa1045940 | 0.806158 | 9.420807e-50 | -8.615850e-47 |
| Msa0616890 | Msa1045940 | 0.802246 | 6.144265e-49 | -8.615850e-47 |
| Msa0617470 | Msa1045940 | 0.807087 | 5.999572e-50 | -8.615850e-47 |
| Msa0621670 | Msa1045940 | 0.802964 | 4.369097e-49 | -8.615850e-47 |
| Msa0625550 | Msa1045940 | 0.807719 | 4.405836e-50 | -8.615850e-47 |
| Msa0654400 | Msa1045940 | 0.840543 | 8.160374e-58 | -8.615850e-47 |
| Msa0654500 | Msa1045940 | 0.824556 | 7.570166e-54 | -8.615850e-47 |
| Msa0654570 | Msa1045940 | 0.803816 | 2.910596e-49 | -8.615850e-47 |
| Msa0656570 | Msa1045940 | 0.801603 | 8.328529e-49 | -8.615850e-47 |
| Msa0676290 | Msa1045940 | 0.828268 | 9.879675e-55 | -8.615850e-47 |
| Msa0676570 | Msa1045940 | 0.802062 | 6.705486e-49 | -8.615850e-47 |
| Msa0701800 | Msa1045940 | 0.819979 | 8.737908e-53 | -8.615850e-47 |
| Msa0711110 | Msa1045940 | 0.809302 | 2.023275e-50 | -8.615850e-47 |
| Msa0742690 | Msa1045940 | 0.807761 | 4.317139e-50 | -8.615850e-47 |
| Msa0754020 | Msa1045940 | 0.806156 | 9.429915e-50 | -8.615850e-47 |
| Msa0779450 | Msa1045940 | 0.802915 | 4.472422e-49 | -8.615850e-47 |
| Msa0779830 | Msa1045940 | 0.814719 | 1.335003e-51 | -8.615850e-47 |
| Msa0801320 | Msa1045940 | 0.814284 | 1.666440e-51 | -8.615850e-47 |
| Msa0807100 | Msa1045940 | 0.806183 | 9.307687e-50 | -8.615850e-47 |
| Msa0807870 | Msa1045940 | 0.800960 | 1.127704e-48 | -8.615850e-47 |
| Msa0827560 | Msa1045940 | 0.800783 | 1.225561e-48 | -8.615850e-47 |
| Msa0832160 | Msa1045940 | 0.808079 | 3.693598e-50 | -8.615850e-47 |
| Msa0833030 | Msa1045940 | 0.802401 | 5.709681e-49 | -8.615850e-47 |
| Msa0127910 | Msa1045940 | 0.816863 | 4.441141e-52 | -8.615850e-47 |
| Msa0138990 | Msa1045940 | 0.810573 | 1.078027e-50 | -8.615850e-47 |
| Msa0139930 | Msa1045940 | 0.935269 | 1.106308e-96 | -8.615850e-47 |
| Msa0154880 | Msa1045940 | 0.801996 | 6.918693e-49 | -8.615850e-47 |
| Msa0163540 | Msa1045940 | 0.802517 | 5.403614e-49 | -8.615850e-47 |
| Msa0173580 | Msa1045940 | 0.819704 | 1.009769e-52 | -8.615850e-47 |
| Msa0173950 | Msa1045940 | 0.810387 | 1.182363e-50 | -8.615850e-47 |
| Msa0174060 | Msa1045940 | 0.838401 | 2.939756e-57 | -8.615850e-47 |
| Msa0198140 | Msa1045940 | 0.800631 | 1.316314e-48 | -8.615850e-47 |
| Msa0212950 | Msa1045940 | 0.802446 | 5.587599e-49 | -8.615850e-47 |
| Msa0238530 | Msa1045940 | 0.800774 | 1.230650e-48 | -8.615850e-47 |
| Msa0368450 | Msa1045940 | 0.825017 | 5.893941e-54 | -8.615850e-47 |
| Msa0378440 | Msa1045940 | 0.801417 | 9.091880e-49 | -8.615850e-47 |
| Msa0387630 | Msa1045940 | 0.811144 | 8.106984e-51 | -8.615850e-47 |
| Msa0389080 | Msa1045940 | 0.828425 | 9.054266e-55 | -8.615850e-47 |
| Msa0390590 | Msa1045940 | 0.819457 | 1.149890e-52 | -8.615850e-47 |
| Msa0414510 | Msa1045940 | 0.815513 | 8.898128e-52 | -8.615850e-47 |
| Msa0427890 | Msa1045940 | 0.818454 | 1.943489e-52 | -8.615850e-47 |
| Msa0450890 | Msa1045940 | 0.801867 | 7.353037e-49 | -8.615850e-47 |
| Msa0460080 | Msa1045940 | 0.832907 | 7.232519e-56 | -8.615850e-47 |
| Msa0461620 | Msa1045940 | 0.822237 | 2.637743e-53 | -8.615850e-47 |
| Msa0463030 | Msa1045940 | 0.803939 | 2.743695e-49 | -8.615850e-47 |
| Msa0474120 | Msa1045940 | 0.819087 | 1.395922e-52 | -8.615850e-47 |
| Msa0475690 | Msa1045940 | 0.805298 | 1.428235e-49 | -8.615850e-47 |
| Msa1004310 | Msa1045940 | 0.920575 | 1.076195e-87 | -8.615850e-47 |
| Msa1004630 | Msa1045940 | 0.843495 | 1.353128e-58 | -8.615850e-47 |
| Msa1004660 | Msa1045940 | 0.855836 | 4.829042e-62 | -8.615850e-47 |
| Msa1014550 | Msa1045940 | 0.829682 | 4.491266e-55 | -8.615850e-47 |
| Msa1031310 | Msa1045940 | 0.828083 | 1.094730e-54 | -8.615850e-47 |
| Msa1038570 | Msa1045940 | 0.807130 | 5.874979e-50 | -8.615850e-47 |
| Msa1045940 | Msa1046980 | 0.836612 | 8.450867e-57 | -8.615850e-47 |
| Msa1045940 | Msa1046990 | 0.930874 | 8.659459e-94 | -8.615850e-47 |
| Msa1045940 | Msa1055520 | 0.819938 | 8.930103e-53 | -8.615850e-47 |
| Msa1045940 | Msa1057940 | 0.818403 | 1.996652e-52 | -8.615850e-47 |
| Msa1045940 | Msa1078280 | 0.818010 | 2.450323e-52 | -8.615850e-47 |
| Msa1045940 | Msa1078760 | 0.802799 | 4.727241e-49 | -8.615850e-47 |
| Msa1045940 | Msa1088000 | 0.810989 | 8.758825e-51 | -8.615850e-47 |
| Msa1045940 | Msa1091130 | 0.830277 | 3.214472e-55 | -8.615850e-47 |
| Msa1045940 | Msa1093190 | 0.801587 | 8.391790e-49 | -8.615850e-47 |
| Msa1045940 | Msa1101050 | 0.838642 | 2.546991e-57 | -8.615850e-47 |
| Msa1045940 | Msa1104020 | 0.803651 | 3.149421e-49 | -8.615850e-47 |
| Msa1045940 | Msa1112210 | 0.810626 | 1.049655e-50 | -8.615850e-47 |
| Msa1045940 | Msa1112230 | 0.810779 | 9.729661e-51 | -8.615850e-47 |
| Msa1045940 | Msa1121720 | 0.812589 | 3.930176e-51 | -8.615850e-47 |
| Msa1045940 | Msa1123490 | 0.819240 | 1.288688e-52 | -8.615850e-47 |
| Msa1045940 | Msa1129120 | 0.807268 | 5.493073e-50 | -8.615850e-47 |
| Msa1045940 | Msa1129160 | 0.811795 | 5.855192e-51 | -8.615850e-47 |
| Msa1045940 | Msa1134430 | 0.903895 | 2.161175e-79 | -8.615850e-47 |
| Msa1045940 | Msa1134480 | 0.822518 | 2.270112e-53 | -8.615850e-47 |
| Msa1045940 | Msa1144380 | 0.800642 | 1.309925e-48 | -8.615850e-47 |
| Msa1045940 | Msa1158280 | 0.845503 | 3.899437e-59 | -8.615850e-47 |
| Msa1045940 | Msa1169590 | 0.814009 | 1.916498e-51 | -8.615850e-47 |
| Msa1045940 | Msa1169780 | 0.808566 | 2.907975e-50 | -8.615850e-47 |
| Msa1045940 | Msa1181370 | 0.850807 | 1.337207e-60 | -8.615850e-47 |
| Msa1045940 | Msa1194480 | 0.808149 | 3.568812e-50 | -8.615850e-47 |
| Msa1045940 | Msa1199540 | 0.819959 | 8.831160e-53 | -8.615850e-47 |
| Msa1045940 | Msa1202470 | -0.801264 | 9.772150e-49 | -8.615850e-47 |
| Msa1045940 | Msa1212150 | 0.806925 | 6.489806e-50 | -8.615850e-47 |
| Msa1045940 | Msa1212210 | 0.802022 | 6.832618e-49 | -8.615850e-47 |
| Msa1045940 | Msa1213470 | 0.842499 | 2.491400e-58 | -8.615850e-47 |
| Msa1045940 | Msa1219530 | 0.801714 | 7.903822e-49 | -8.615850e-47 |
| Msa1045940 | Msa1236190 | 0.810713 | 1.005339e-50 | -8.615850e-47 |
| Msa1045940 | Msa1265670 | 0.805442 | 1.332481e-49 | -8.615850e-47 |
| Msa1045940 | Msa1273620 | 0.829412 | 5.222775e-55 | -8.615850e-47 |
| Msa1045940 | Msa1278080 | 0.804904 | 1.726496e-49 | -8.615850e-47 |
| Msa1045940 | Msa1279200 | 0.807117 | 5.912898e-50 | -8.615850e-47 |
| Msa1045940 | Msa1290090 | 0.800298 | 1.539246e-48 | -8.615850e-47 |
| Msa1045940 | Msa1300370 | 0.844031 | 9.726010e-59 | -8.615850e-47 |
| Msa1045940 | Msa1305970 | 0.841463 | 4.680918e-58 | -8.615850e-47 |
| Msa1045940 | Msa1311600 | 0.819934 | 8.945412e-53 | -8.615850e-47 |
| Msa1045940 | Msa1328680 | 0.804208 | 2.411836e-49 | -8.615850e-47 |
| Msa1045940 | Msa1333220 | 0.809866 | 1.531055e-50 | -8.615850e-47 |
| Msa1045940 | Msa1356100 | 0.813189 | 2.903498e-51 | -8.615850e-47 |
| Msa1045940 | Msa1380180 | 0.833085 | 6.529740e-56 | -8.615850e-47 |
| Msa1045940 | Msa1384410 | 0.811070 | 8.413328e-51 | -8.615850e-47 |
| Msa1045940 | Msa1386580 | 0.800185 | 1.622733e-48 | -8.615850e-47 |
| Msa1045940 | Msa1386910 | 0.803012 | 4.270690e-49 | -8.615850e-47 |
| Msa1045940 | Msa1388720 | 0.805412 | 1.352016e-49 | -8.615850e-47 |
| Msa1045940 | Msa1389670 | 0.826885 | 2.122412e-54 | -8.615850e-47 |
| Msa1045940 | Msa1395360 | 0.806564 | 7.736737e-50 | -8.615850e-47 |
| Msa1045940 | Msa1397560 | 0.814109 | 1.820859e-51 | -8.615850e-47 |
| Msa1045940 | Msa1398450 | 0.827007 | 1.983675e-54 | -8.615850e-47 |
| Msa1045940 | Msa1407770 | 0.815811 | 7.632993e-52 | -8.615850e-47 |
| Msa1045940 | Msa1408860 | 0.807146 | 5.827443e-50 | -8.615850e-47 |
| Msa1045940 | Msa1409360 | 0.801808 | 7.560952e-49 | -8.615850e-47 |
| Msa1045940 | Msa1410480 | 0.806854 | 6.720655e-50 | -8.615850e-47 |
| Msa1045940 | Msa1410500 | 0.805767 | 1.138846e-49 | -8.615850e-47 |
| Msa1045940 | Msa1421520 | 0.833376 | 5.525376e-56 | -8.615850e-47 |
| Msa1045940 | Msa1437740 | 0.812760 | 3.604220e-51 | -8.615850e-47 |
| Msa1045940 | Msa1444130 | 0.805611 | 1.228167e-49 | -8.615850e-47 |
| Msa1045940 | Msa1448840 | 0.820506 | 6.618504e-53 | -8.615850e-47 |
| Msa1045940 | Msa1459130 | 0.824389 | 8.289469e-54 | -8.615850e-47 |
| Msa0259770 | Msa1045940 | 0.814523 | 1.475528e-51 | -8.615850e-47 |
| Msa0261350 | Msa1045940 | 0.805141 | 1.540707e-49 | -8.615850e-47 |
| Msa0305440 | Msa1045940 | 0.814318 | 1.637828e-51 | -8.615850e-47 |
| Msa0331070 | Msa1045940 | 0.813428 | 2.572518e-51 | -8.615850e-47 |
| Msa0340700 | Msa1045940 | 0.803391 | 3.564790e-49 | -8.615850e-47 |
| Msa0362440 | Msa1045940 | 0.824507 | 7.775265e-54 | -8.615850e-47 |
| Msa0502900 | Msa1045940 | 0.841003 | 6.181844e-58 | -8.615850e-47 |
| Msa0506090 | Msa1045940 | 0.806030 | 1.002438e-49 | -8.615850e-47 |
| Msa0507960 | Msa1045940 | 0.810250 | 1.265819e-50 | -8.615850e-47 |
| Msa0526500 | Msa1045940 | 0.800243 | 1.579279e-48 | -8.615850e-47 |
| Msa0533610 | Msa1045940 | 0.832831 | 7.554106e-56 | -8.615850e-47 |
| Msa0545750 | Msa1045940 | 0.824400 | 8.237513e-54 | -8.615850e-47 |
| Msa0559440 | Msa1045940 | 0.828520 | 8.591470e-55 | -8.615850e-47 |
| Msa0559640 | Msa1045940 | 0.826466 | 2.671640e-54 | -8.615850e-47 |
| Msa0564580 | Msa1045940 | 0.808994 | 2.355950e-50 | -8.615850e-47 |
| Msa0567420 | Msa1045940 | 0.801947 | 7.078742e-49 | -8.615850e-47 |
| Msa0567490 | Msa1045940 | 0.825460 | 4.631734e-54 | -8.615850e-47 |
| Msa0567530 | Msa1045940 | 0.829470 | 5.056751e-55 | -8.615850e-47 |
| Msa0569980 | Msa1045940 | 0.802050 | 6.741569e-49 | -8.615850e-47 |
| Msa0571900 | Msa1045940 | 0.815737 | 7.932338e-52 | -8.615850e-47 |
| Msa0575960 | Msa1045940 | 0.805840 | 1.099300e-49 | -8.615850e-47 |
| Msa0577960 | Msa1045940 | 0.809055 | 2.286175e-50 | -8.615850e-47 |
| Msa0582270 | Msa1045940 | 0.811304 | 7.485866e-51 | -8.615850e-47 |
| Msa0589930 | Msa1045940 | 0.821476 | 3.956764e-53 | -8.615850e-47 |
| Msa0601470 | Msa1045940 | 0.816233 | 6.145289e-52 | -8.615850e-47 |
| Msa0862750 | Msa1045940 | 0.806924 | 6.495780e-50 | -8.615850e-47 |
| Msa0868050 | Msa1045940 | 0.816188 | 6.288647e-52 | -8.615850e-47 |
| Msa0869320 | Msa1045940 | 0.841166 | 5.604055e-58 | -8.615850e-47 |
| Msa0870220 | Msa1045940 | 0.840610 | 7.837402e-58 | -8.615850e-47 |
| Msa0903460 | Msa1045940 | 0.830765 | 2.442309e-55 | -8.615850e-47 |
| Msa0906100 | Msa1045940 | 0.804899 | 1.730569e-49 | -8.615850e-47 |
| Msa0924690 | Msa1045940 | 0.828212 | 1.019448e-54 | -8.615850e-47 |
| Msa0934290 | Msa1045940 | 0.837125 | 6.250901e-57 | -8.615850e-47 |
| Msa0935930 | Msa1045940 | 0.836293 | 1.018977e-56 | -8.615850e-47 |
| Msa0945520 | Msa1045940 | 0.829409 | 5.231477e-55 | -8.615850e-47 |
| Msa0956600 | Msa1045940 | 0.817589 | 3.049072e-52 | -8.615850e-47 |
| Msa0963800 | Msa1045940 | 0.834747 | 2.506375e-56 | -8.615850e-47 |
| Msa0971780 | Msa1045940 | 0.837716 | 4.410085e-57 | -8.615850e-47 |
| Msa0972930 | Msa1045940 | 0.840495 | 8.401283e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045940 | MtrunA17_Chr7g0214771 | 88.372 | 172 | 20 | 0 | 2 | 173 | 7 | 178 | 4.71e-113 | 318 |
| Msa1045940 | MtrunA17_Chr7g0214761 | 88.439 | 173 | 20 | 0 | 1 | 173 | 6 | 178 | 6.27e-112 | 315 |
| Msa1045940 | MtrunA17_Chr6g0461711 | 67.647 | 170 | 54 | 1 | 2 | 171 | 7 | 175 | 8.36e-82 | 239 |
| Msa1045940 | MtrunA17_Chr7g0252784 | 66.667 | 168 | 55 | 1 | 2 | 169 | 7 | 173 | 1.21e-79 | 234 |
| Msa1045940 | MtrunA17_Chr7g0252800 | 61.905 | 168 | 63 | 1 | 2 | 169 | 8 | 174 | 5.78e-73 | 217 |
| Msa1045940 | MtrunA17_Chr7g0252811 | 60.736 | 163 | 62 | 2 | 8 | 170 | 35 | 195 | 8.72e-69 | 207 |
| Msa1045940 | MtrunA17_Chr6g0472451 | 56.805 | 169 | 72 | 1 | 1 | 169 | 5 | 172 | 1.02e-66 | 201 |
| Msa1045940 | MtrunA17_Chr7g0266201 | 55.689 | 167 | 72 | 2 | 4 | 169 | 9 | 174 | 1.69e-62 | 190 |
| Msa1045940 | MtrunA17_Chr1g0178751 | 53.125 | 160 | 72 | 2 | 2 | 159 | 7 | 165 | 1.12e-58 | 181 |
| Msa1045940 | MtrunA17_Chr2g0321301 | 48.521 | 169 | 85 | 2 | 2 | 169 | 6 | 173 | 1.11e-56 | 176 |
| Msa1045940 | MtrunA17_Chr8g0392741 | 48.824 | 170 | 84 | 3 | 1 | 169 | 6 | 173 | 8.60e-47 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1045940 | AT1G65480.2 | 64.118 | 170 | 60 | 1 | 2 | 171 | 51 | 219 | 1.41e-80 | 238 |
| Msa1045940 | AT1G65480.1 | 64.118 | 170 | 60 | 1 | 2 | 171 | 7 | 175 | 1.42e-80 | 236 |
| Msa1045940 | AT4G20370.1 | 62.130 | 169 | 63 | 1 | 2 | 170 | 7 | 174 | 2.42e-76 | 226 |
| Msa1045940 | AT5G62040.1 | 53.988 | 163 | 74 | 1 | 4 | 165 | 8 | 170 | 9.23e-61 | 186 |
| Msa1045940 | AT5G03840.1 | 53.892 | 167 | 75 | 2 | 4 | 169 | 12 | 177 | 4.71e-59 | 182 |
| Msa1045940 | AT2G27550.1 | 49.704 | 169 | 84 | 1 | 2 | 169 | 7 | 175 | 1.59e-57 | 178 |
| Msa1045940 | AT1G18100.1 | 50.292 | 171 | 81 | 3 | 1 | 169 | 5 | 173 | 6.96e-51 | 161 |
Find 57 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGGTGGGTTAACTATT+TGG | 0.101664 | 7_2:-6192907 | None:intergenic |
| TTACAAATTCAGTGTCTTTC+AGG | 0.122353 | 7_2:+6192831 | Msa1045940:CDS |
| TGCTTTGATAATTTGCTTAT+TGG | 0.192847 | 7_2:-6192731 | None:intergenic |
| AAAGACACTGAATTTGTAAA+AGG | 0.219593 | 7_2:-6192827 | None:intergenic |
| CTTGTTGTTGGTGGTGTAAT+TGG | 0.225955 | 7_2:+6192791 | Msa1045940:CDS |
| TTTGCAGAAGTTTACAATCT+TGG | 0.279344 | 7_2:+6195795 | Msa1045940:CDS |
| TGAATCCCTCTTGTTGGTCT+TGG | 0.316500 | 7_2:-6195687 | None:intergenic |
| TCTTGGTGGGTTAACTATTT+GGG | 0.334065 | 7_2:-6192906 | None:intergenic |
| CCCTGTAGTCGCTGGAATAT+TGG | 0.340527 | 7_2:-6195316 | None:intergenic |
| TCAGTAGGGCTTGGTGCATC+AGG | 0.356176 | 7_2:-6193682 | None:intergenic |
| TACAGGTATTCCCTCATATT+AGG | 0.366238 | 7_2:-6193706 | None:intergenic |
| TTGTGGTTATAATTATTAGA+TGG | 0.404057 | 7_2:-6195883 | None:intergenic |
| TTTCCACCAACTTGAACTCT+TGG | 0.407751 | 7_2:-6192923 | None:intergenic |
| CCAGAGTGTGTAGGGTTCTC+AGG | 0.411027 | 7_2:-6192949 | None:intergenic |
| TGTTGTTTAAGCAACCTTGT+AGG | 0.415361 | 7_2:+6195724 | Msa1045940:CDS |
| CCACCAACTTGAACTCTTGG+TGG | 0.429744 | 7_2:-6192920 | None:intergenic |
| TACAAATTCAGTGTCTTTCA+GGG | 0.444238 | 7_2:+6192832 | Msa1045940:CDS |
| GCCCTACTGATCCTAATATG+AGG | 0.445100 | 7_2:+6193695 | Msa1045940:CDS |
| TGTCAACGAGAAAGTGGTTC+CGG | 0.448740 | 7_2:+6195846 | Msa1045940:CDS |
| ACCAATATTCCAGCGACTAC+AGG | 0.450659 | 7_2:+6195315 | Msa1045940:CDS |
| ATATGAGGGAATACCTGTAT+TGG | 0.453295 | 7_2:+6193710 | Msa1045940:CDS |
| ACACGATGAATCCCTCTTGT+TGG | 0.458184 | 7_2:-6195693 | None:intergenic |
| TTCAATTGTCAACGAGAAAG+TGG | 0.476637 | 7_2:+6195840 | Msa1045940:CDS |
| TTGAAATAGAGAGCAGCAAC+AGG | 0.483630 | 7_2:-6195822 | None:intergenic |
| ATGAATTCCCTTGTTGTTGG+TGG | 0.489339 | 7_2:+6192782 | Msa1045940:CDS |
| CTCAAGGTTTGTGGTTGTTG+TGG | 0.492802 | 7_2:-6195900 | None:intergenic |
| TATCTACTACTCAAGGTTTG+TGG | 0.499893 | 7_2:-6195909 | None:intergenic |
| AAATTCAAACTTACCAATAC+AGG | 0.502537 | 7_2:-6193723 | None:intergenic |
| GCGACTACAGGGACAACATT+CGG | 0.503478 | 7_2:+6195327 | Msa1045940:CDS |
| AATGTTGTCCCTGTAGTCGC+TGG | 0.506880 | 7_2:-6195324 | None:intergenic |
| CACCAACTTGAACTCTTGGT+GGG | 0.509185 | 7_2:-6192919 | None:intergenic |
| TATACCAACCAGAGTGTGTA+GGG | 0.509279 | 7_2:-6192957 | None:intergenic |
| ATATTAGGATCAGTAGGGCT+TGG | 0.509781 | 7_2:-6193691 | None:intergenic |
| AAGACACTGAATTTGTAAAA+GGG | 0.531689 | 7_2:-6192826 | None:intergenic |
| GCTAATATAGTGTGCCTACA+AGG | 0.535198 | 7_2:-6195738 | None:intergenic |
| CCACCAAGAGTTCAAGTTGG+TGG | 0.538019 | 7_2:+6192920 | Msa1045940:CDS |
| GATGGTTAGCCTCCTTCCAC+CGG | 0.542124 | 7_2:-6195865 | None:intergenic |
| GAGAAAGTGGTTCCGGTGGA+AGG | 0.542228 | 7_2:+6195853 | Msa1045940:CDS |
| CAGTAGGGCTTGGTGCATCA+GGG | 0.543914 | 7_2:-6193681 | None:intergenic |
| TCAATGAATTCCCTTGTTGT+TGG | 0.548648 | 7_2:+6192779 | Msa1045940:exon |
| CCCTCATATTAGGATCAGTA+GGG | 0.548872 | 7_2:-6193696 | None:intergenic |
| TTATAGATATCTACTACTCA+AGG | 0.561415 | 7_2:-6195916 | None:intergenic |
| CCCTACTGATCCTAATATGA+GGG | 0.564661 | 7_2:+6193696 | Msa1045940:CDS |
| GAAAATCCAAGACCAACAAG+AGG | 0.566107 | 7_2:+6195681 | Msa1045940:CDS |
| CCTGAGAACCCTACACACTC+TGG | 0.566847 | 7_2:+6192949 | Msa1045940:CDS |
| CAATTACACCACCAACAACA+AGG | 0.568356 | 7_2:-6192790 | None:intergenic |
| TCCCTCATATTAGGATCAGT+AGG | 0.580960 | 7_2:-6193697 | None:intergenic |
| CCAATATTCCAGCGACTACA+GGG | 0.601358 | 7_2:+6195316 | Msa1045940:CDS |
| GGTGGGTTAACTATTTGGGA+CGG | 0.602001 | 7_2:-6192902 | None:intergenic |
| GTATACCAACCAGAGTGTGT+AGG | 0.613080 | 7_2:-6192958 | None:intergenic |
| AAAATCCAAGACCAACAAGA+GGG | 0.616950 | 7_2:+6195682 | Msa1045940:CDS |
| CAACGAGAAAGTGGTTCCGG+TGG | 0.628002 | 7_2:+6195849 | Msa1045940:CDS |
| AAAGTGGTTCCGGTGGAAGG+AGG | 0.632372 | 7_2:+6195856 | Msa1045940:CDS |
| AACCCACCAAGAGTTCAAGT+TGG | 0.642757 | 7_2:+6192917 | Msa1045940:CDS |
| AATAACAAAGAAGTCATCAA+CGG | 0.645377 | 7_2:+6192866 | Msa1045940:CDS |
| AATTACACCACCAACAACAA+GGG | 0.656428 | 7_2:-6192789 | None:intergenic |
| AACAAAGAAGTCATCAACGG+TGG | 0.689200 | 7_2:+6192869 | Msa1045940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATATTTTTATTTTGTTT+CGG | + | chr7_2:6193788-6193807 | Msa1045940:intron | 10.0% |
| !! | TTATTTATTAAAGATCTATT+TGG | - | chr7_2:6194137-6194156 | None:intergenic | 10.0% |
| !! | ATTCCAAAAATATTATAAAT+TGG | - | chr7_2:6194303-6194322 | None:intergenic | 10.0% |
| !!! | TAATATTTTTGGAATTTATA+AGG | + | chr7_2:6194308-6194327 | Msa1045940:intron | 10.0% |
| !! | TTGTATAAATATTCAAAAAA+TGG | - | chr7_2:6194343-6194362 | None:intergenic | 10.0% |
| !!! | AATTTTTTAATAATTTAGCA+TGG | + | chr7_2:6194499-6194518 | Msa1045940:intron | 10.0% |
| !!! | ATACATTTTTATATATAACA+AGG | + | chr7_2:6195445-6195464 | Msa1045940:intron | 10.0% |
| !!! | TACATTTTTATATATAACAA+GGG | + | chr7_2:6195446-6195465 | Msa1045940:intron | 10.0% |
| !!! | ATCATTGTTATTTTTTTTAA+AGG | - | chr7_2:6195961-6195980 | None:intergenic | 10.0% |
| !! | GATTATGTGTTAATTAATTT+GGG | - | chr7_2:6193525-6193544 | None:intergenic | 15.0% |
| !! | TGATTATGTGTTAATTAATT+TGG | - | chr7_2:6193526-6193545 | None:intergenic | 15.0% |
| !! | AATACAAAATAAACCTAATT+GGG | + | chr7_2:6193571-6193590 | Msa1045940:intron | 15.0% |
| !! | ACAAAATAAAAATATGATTG+TGG | - | chr7_2:6193786-6193805 | None:intergenic | 15.0% |
| !! | TGATAAATATTATTATGTCT+TGG | + | chr7_2:6193820-6193839 | Msa1045940:intron | 15.0% |
| !!! | CAACCAATTTATAATATTTT+TGG | + | chr7_2:6194297-6194316 | Msa1045940:intron | 15.0% |
| !!! | TATATTTTTCATGAATTCAA+AGG | - | chr7_2:6194653-6194672 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAGTGTTGTATTT+AGG | + | chr7_2:6194963-6194982 | Msa1045940:intron | 15.0% |
| !!! | TATTTAGGTTAGAAAATAAT+TGG | + | chr7_2:6194978-6194997 | Msa1045940:intron | 15.0% |
| !! | TTTCTATATAAAAATCTCCT+TGG | - | chr7_2:6193059-6193078 | None:intergenic | 20.0% |
| !! | TATAGAAATTAGAGTTGAAA+CGG | + | chr7_2:6193071-6193090 | Msa1045940:intron | 20.0% |
| !!! | GACATAACTTTTTTTTTGAA+AGG | - | chr7_2:6193216-6193235 | None:intergenic | 20.0% |
| !!! | AGTTTTTCACCTTTTTTTTA+AGG | - | chr7_2:6193421-6193440 | None:intergenic | 20.0% |
| !! | TTGTATTGAAGTAATGTTAT+TGG | - | chr7_2:6193558-6193577 | None:intergenic | 20.0% |
| !! | CAATACAAAATAAACCTAAT+TGG | + | chr7_2:6193570-6193589 | Msa1045940:intron | 20.0% |
| !!! | CTTTCACTAATTAAAGATTT+TGG | - | chr7_2:6193612-6193631 | None:intergenic | 20.0% |
| !! | ATATTCAAAAAATGGTAAGT+TGG | - | chr7_2:6194335-6194354 | None:intergenic | 20.0% |
| !! | AGTGTAAGAACAAATAATTT+GGG | - | chr7_2:6194390-6194409 | None:intergenic | 20.0% |
| !! | TAGTGTAAGAACAAATAATT+TGG | - | chr7_2:6194391-6194410 | None:intergenic | 20.0% |
| !! | GAAAAATATAACTTCAATTG+TGG | + | chr7_2:6194663-6194682 | Msa1045940:intron | 20.0% |
| !! | TCAAAATAAAGATAAACAGT+GGG | - | chr7_2:6194803-6194822 | None:intergenic | 20.0% |
| !! | ATCAAAATAAAGATAAACAG+TGG | - | chr7_2:6194804-6194823 | None:intergenic | 20.0% |
| !!! | GTTTATCTTTATTTTGATGA+TGG | + | chr7_2:6194806-6194825 | Msa1045940:intron | 20.0% |
| !! | TTGTGGTTATAATTATTAGA+TGG | - | chr7_2:6195886-6195905 | None:intergenic | 20.0% |
| !!! | TGCTTTGATAATTTGCTTAT+TGG | - | chr7_2:6192734-6192753 | None:intergenic | 25.0% |
| ! | AAGACACTGAATTTGTAAAA+GGG | - | chr7_2:6192829-6192848 | None:intergenic | 25.0% |
| ! | AAAGACACTGAATTTGTAAA+AGG | - | chr7_2:6192830-6192849 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGTCATCAA+CGG | + | chr7_2:6192866-6192885 | Msa1045940:CDS | 25.0% |
| !!! | TTATTTCTTTTGAACAACCA+AGG | + | chr7_2:6193039-6193058 | Msa1045940:intron | 25.0% |
| ! | GGTTATATACAAAGTATAAG+AGG | + | chr7_2:6193099-6193118 | Msa1045940:intron | 25.0% |
| ! | AAGTAACTTTCTTCTATGTT+TGG | - | chr7_2:6193162-6193181 | None:intergenic | 25.0% |
| ! | TTAAGAGACATTAATCCATA+AGG | + | chr7_2:6193183-6193202 | Msa1045940:intron | 25.0% |
| ! | AGTTCAAATTGCCAAATTAA+TGG | + | chr7_2:6193318-6193337 | Msa1045940:intron | 25.0% |
| ! | AAACTCCTTCCTTAAAAAAA+AGG | + | chr7_2:6193409-6193428 | Msa1045940:intron | 25.0% |
| !!! | TTTCACCTTTTTTTTAAGGA+AGG | - | chr7_2:6193417-6193436 | None:intergenic | 25.0% |
| !!! | ATTAGTGAAAGCTTTTTTCT+AGG | + | chr7_2:6193621-6193640 | Msa1045940:intron | 25.0% |
| !!! | TTAGTGAAAGCTTTTTTCTA+GGG | + | chr7_2:6193622-6193641 | Msa1045940:intron | 25.0% |
| ! | AAATTCAAACTTACCAATAC+AGG | - | chr7_2:6193726-6193745 | None:intergenic | 25.0% |
| !!! | ATATTTTAAGAGTGCGTTTT+AGG | + | chr7_2:6193917-6193936 | Msa1045940:intron | 25.0% |
| !!! | TATTTTAAGAGTGCGTTTTA+GGG | + | chr7_2:6193918-6193937 | Msa1045940:intron | 25.0% |
| ! | AAAAATAAGCCAAACAAAAG+AGG | - | chr7_2:6193944-6193963 | None:intergenic | 25.0% |
| !! | TTTTTGATAAGTCAATTCAC+TGG | - | chr7_2:6194443-6194462 | None:intergenic | 25.0% |
| ! | AATACACAACTTATGATTTG+CGG | + | chr7_2:6194464-6194483 | Msa1045940:intron | 25.0% |
| ! | ATAGTTCATTCTTTGCAATT+TGG | + | chr7_2:6194753-6194772 | Msa1045940:intron | 25.0% |
| ! | ATGCATTTGAACAATGTTTA+TGG | + | chr7_2:6194856-6194875 | Msa1045940:intron | 25.0% |
| !! | TTTTTATATATAACAAGGGC+CGG | + | chr7_2:6195450-6195469 | Msa1045940:intron | 25.0% |
| !!! | CACGTTGTTTTATTAATTGT+AGG | + | chr7_2:6195639-6195658 | Msa1045940:intron | 25.0% |
| ! | TTATAGATATCTACTACTCA+AGG | - | chr7_2:6195919-6195938 | None:intergenic | 25.0% |
| TTACAAATTCAGTGTCTTTC+AGG | + | chr7_2:6192831-6192850 | Msa1045940:CDS | 30.0% | |
| TACAAATTCAGTGTCTTTCA+GGG | + | chr7_2:6192832-6192851 | Msa1045940:CDS | 30.0% | |
| AATTAGAGTTGAAACGGTTT+AGG | + | chr7_2:6193077-6193096 | Msa1045940:intron | 30.0% | |
| ATTAGAGTTGAAACGGTTTA+GGG | + | chr7_2:6193078-6193097 | Msa1045940:intron | 30.0% | |
| TATACAAAGTATAAGAGGCA+TGG | + | chr7_2:6193104-6193123 | Msa1045940:intron | 30.0% | |
| TAACTTTCTTCTATGTTTGG+AGG | - | chr7_2:6193159-6193178 | None:intergenic | 30.0% | |
| !! | CTTAGAAACGGTTTTTGATT+AGG | - | chr7_2:6193248-6193267 | None:intergenic | 30.0% |
| CTAGAAATGGCAATAAGTTT+CGG | - | chr7_2:6193297-6193316 | None:intergenic | 30.0% | |
| GCAATTTGAACTACTAGAAA+TGG | - | chr7_2:6193310-6193329 | None:intergenic | 30.0% | |
| GACAATATTTCTTGTAGTGA+AGG | - | chr7_2:6193347-6193366 | None:intergenic | 30.0% | |
| ! | AGATTTTGGATCCTTCTAAT+TGG | - | chr7_2:6193598-6193617 | None:intergenic | 30.0% |
| CTATAGGACTTAAATTTGGT+TGG | - | chr7_2:6194416-6194435 | None:intergenic | 30.0% | |
| ! | ATACACAACTTATGATTTGC+GGG | + | chr7_2:6194465-6194484 | Msa1045940:intron | 30.0% |
| ACCATTTCCCTCTTTATTAT+TGG | + | chr7_2:6195273-6195292 | Msa1045940:intron | 30.0% | |
| TCCAATAATAAAGAGGGAAA+TGG | - | chr7_2:6195277-6195296 | None:intergenic | 30.0% | |
| TAGCGATCCAATAATAAAGA+GGG | - | chr7_2:6195283-6195302 | None:intergenic | 30.0% | |
| ATAGCGATCCAATAATAAAG+AGG | - | chr7_2:6195284-6195303 | None:intergenic | 30.0% | |
| TTATTATTGGATCGCTATAC+AGG | + | chr7_2:6195286-6195305 | Msa1045940:intron | 30.0% | |
| ! | TGGCTAGAATTCACATTTTA+AGG | - | chr7_2:6195505-6195524 | None:intergenic | 30.0% |
| !!! | TTTTTTGTCAAGTAGTCTAG+TGG | - | chr7_2:6195525-6195544 | None:intergenic | 30.0% |
| ! | ATAAAATTTTGTCTCGATCG+AGG | - | chr7_2:6195765-6195784 | None:intergenic | 30.0% |
| TTTGCAGAAGTTTACAATCT+TGG | + | chr7_2:6195795-6195814 | Msa1045940:CDS | 30.0% | |
| ! | TCAATGAATTCCCTTGTTGT+TGG | + | chr7_2:6192779-6192798 | Msa1045940:exon | 35.0% |
| AATTACACCACCAACAACAA+GGG | - | chr7_2:6192792-6192811 | None:intergenic | 35.0% | |
| !! | TCTTGGTGGGTTAACTATTT+GGG | - | chr7_2:6192909-6192928 | None:intergenic | 35.0% |
| TTCAACTGCAGTCTTAGAAA+CGG | - | chr7_2:6193260-6193279 | None:intergenic | 35.0% | |
| AGTGAAGGTTGCCATTAATT+TGG | - | chr7_2:6193332-6193351 | None:intergenic | 35.0% | |
| !! | TTGCTGTTACATGCAACTTT+TGG | - | chr7_2:6193381-6193400 | None:intergenic | 35.0% |
| !!! | TTCTAGGGTTTTTGACTTTG+TGG | + | chr7_2:6193637-6193656 | Msa1045940:intron | 35.0% |
| TACAGGTATTCCCTCATATT+AGG | - | chr7_2:6193709-6193728 | None:intergenic | 35.0% | |
| ATATGAGGGAATACCTGTAT+TGG | + | chr7_2:6193710-6193729 | Msa1045940:CDS | 35.0% | |
| !! | CTTGGTATTGTTTTGTTCAG+TGG | + | chr7_2:6193838-6193857 | Msa1045940:intron | 35.0% |
| TTGATAAGTCAATTCACTGG+CGG | - | chr7_2:6194440-6194459 | None:intergenic | 35.0% | |
| ! | TCACTCATGTTTGTTGAACT+TGG | - | chr7_2:6194605-6194624 | None:intergenic | 35.0% |
| GGATAAACAATAGAACCAAG+TGG | + | chr7_2:6194684-6194703 | Msa1045940:intron | 35.0% | |
| CTTTATTCTATTCGCTCACA+AGG | - | chr7_2:6194903-6194922 | None:intergenic | 35.0% | |
| GTGATGTGATAGACAAAACA+AGG | + | chr7_2:6195131-6195150 | Msa1045940:intron | 35.0% | |
| GAGGGAAATGGTAATTAGAA+TGG | - | chr7_2:6195265-6195284 | None:intergenic | 35.0% | |
| !!! | CACATTTTAAGGTGAGTAAG+TGG | - | chr7_2:6195494-6195513 | None:intergenic | 35.0% |
| AAAATCCAAGACCAACAAGA+GGG | + | chr7_2:6195682-6195701 | Msa1045940:CDS | 35.0% | |
| ! | TGTTGTTTAAGCAACCTTGT+AGG | + | chr7_2:6195724-6195743 | Msa1045940:CDS | 35.0% |
| TTCAATTGTCAACGAGAAAG+TGG | + | chr7_2:6195840-6195859 | Msa1045940:CDS | 35.0% | |
| TATCTACTACTCAAGGTTTG+TGG | - | chr7_2:6195912-6195931 | None:intergenic | 35.0% | |
| !! | ATGAATTCCCTTGTTGTTGG+TGG | + | chr7_2:6192782-6192801 | Msa1045940:CDS | 40.0% |
| CAATTACACCACCAACAACA+AGG | - | chr7_2:6192793-6192812 | None:intergenic | 40.0% | |
| !! | CTTGTTGTTGGTGGTGTAAT+TGG | + | chr7_2:6192791-6192810 | Msa1045940:CDS | 40.0% |
| AACAAAGAAGTCATCAACGG+TGG | + | chr7_2:6192869-6192888 | Msa1045940:CDS | 40.0% | |
| !! | CTCTTGGTGGGTTAACTATT+TGG | - | chr7_2:6192910-6192929 | None:intergenic | 40.0% |
| TTTCCACCAACTTGAACTCT+TGG | - | chr7_2:6192926-6192945 | None:intergenic | 40.0% | |
| TATACCAACCAGAGTGTGTA+GGG | - | chr7_2:6192960-6192979 | None:intergenic | 40.0% | |
| !!! | CTCATTTTTCAAGTGCCACA+AGG | + | chr7_2:6193439-6193458 | Msa1045940:intron | 40.0% |
| !!! | ATTTTTCAAGTGCCACAAGG+TGG | + | chr7_2:6193442-6193461 | Msa1045940:intron | 40.0% |
| GTGGGTAAAGGTTACATACA+AGG | - | chr7_2:6193477-6193496 | None:intergenic | 40.0% | |
| ! | GGGATTTTTCGTTATCCATG+TGG | - | chr7_2:6193505-6193524 | None:intergenic | 40.0% |
| CCTTCTAATTGGTCCCAATT+AGG | - | chr7_2:6193587-6193606 | None:intergenic | 40.0% | |
| CCTAATTGGGACCAATTAGA+AGG | + | chr7_2:6193584-6193603 | Msa1045940:intron | 40.0% | |
| ATATTAGGATCAGTAGGGCT+TGG | - | chr7_2:6193694-6193713 | None:intergenic | 40.0% | |
| CCCTCATATTAGGATCAGTA+GGG | - | chr7_2:6193699-6193718 | None:intergenic | 40.0% | |
| CCCTACTGATCCTAATATGA+GGG | + | chr7_2:6193696-6193715 | Msa1045940:CDS | 40.0% | |
| TCCCTCATATTAGGATCAGT+AGG | - | chr7_2:6193700-6193719 | None:intergenic | 40.0% | |
| !!! | GTTTTAGGGCCTCTTTTGTT+TGG | + | chr7_2:6193932-6193951 | Msa1045940:intron | 40.0% |
| CGGGCTATAGGACTTAAATT+TGG | - | chr7_2:6194420-6194439 | None:intergenic | 40.0% | |
| TGATAAGTCAATTCACTGGC+GGG | - | chr7_2:6194439-6194458 | None:intergenic | 40.0% | |
| TATTGGATCGCTATACAGGA+TGG | + | chr7_2:6195290-6195309 | Msa1045940:intron | 40.0% | |
| GTCTCTGAGTATAGATCAGT+TGG | + | chr7_2:6195414-6195433 | Msa1045940:intron | 40.0% | |
| GAAAATCCAAGACCAACAAG+AGG | + | chr7_2:6195681-6195700 | Msa1045940:CDS | 40.0% | |
| GCTAATATAGTGTGCCTACA+AGG | - | chr7_2:6195741-6195760 | None:intergenic | 40.0% | |
| TTGAAATAGAGAGCAGCAAC+AGG | - | chr7_2:6195825-6195844 | None:intergenic | 40.0% | |
| !! | GGTGGGTTAACTATTTGGGA+CGG | - | chr7_2:6192905-6192924 | None:intergenic | 45.0% |
| AACCCACCAAGAGTTCAAGT+TGG | + | chr7_2:6192917-6192936 | Msa1045940:CDS | 45.0% | |
| CACCAACTTGAACTCTTGGT+GGG | - | chr7_2:6192922-6192941 | None:intergenic | 45.0% | |
| GTATACCAACCAGAGTGTGT+AGG | - | chr7_2:6192961-6192980 | None:intergenic | 45.0% | |
| ! | TTGAAAGGCGCATGACCTTA+TGG | - | chr7_2:6193201-6193220 | None:intergenic | 45.0% |
| GTTATCCATGTGGCAGTTGT+GGG | - | chr7_2:6193495-6193514 | None:intergenic | 45.0% | |
| TTGACTTTGTGGCACTTTGC+AGG | + | chr7_2:6193648-6193667 | Msa1045940:intron | 45.0% | |
| GCCCTACTGATCCTAATATG+AGG | + | chr7_2:6193695-6193714 | Msa1045940:CDS | 45.0% | |
| ACTTGGTCACATCTTGTGCA+TGG | - | chr7_2:6194588-6194607 | None:intergenic | 45.0% | |
| CACAGACACAAGAAACCACT+TGG | - | chr7_2:6194702-6194721 | None:intergenic | 45.0% | |
| ! | ATTCGCTCACAAGGTGTCTA+CGG | - | chr7_2:6194894-6194913 | None:intergenic | 45.0% |
| ACCAATATTCCAGCGACTAC+AGG | + | chr7_2:6195315-6195334 | Msa1045940:CDS | 45.0% | |
| CCAATATTCCAGCGACTACA+GGG | + | chr7_2:6195316-6195335 | Msa1045940:CDS | 45.0% | |
| AAGGTGAGTAAGTGGAGTGT+CGG | - | chr7_2:6195486-6195505 | None:intergenic | 45.0% | |
| ! | TGAATCCCTCTTGTTGGTCT+TGG | - | chr7_2:6195690-6195709 | None:intergenic | 45.0% |
| ACACGATGAATCCCTCTTGT+TGG | - | chr7_2:6195696-6195715 | None:intergenic | 45.0% | |
| TGTCAACGAGAAAGTGGTTC+CGG | + | chr7_2:6195846-6195865 | Msa1045940:CDS | 45.0% | |
| CTCAAGGTTTGTGGTTGTTG+TGG | - | chr7_2:6195903-6195922 | None:intergenic | 45.0% | |
| !! | TTTCTATATAATTAAAAAAA+TGG | + | chr7_2:6194214-6194233 | Msa1045940:intron | 5.0% |
| CCACCAACTTGAACTCTTGG+TGG | - | chr7_2:6192923-6192942 | None:intergenic | 50.0% | |
| !! | CCACCAAGAGTTCAAGTTGG+TGG | + | chr7_2:6192920-6192939 | Msa1045940:CDS | 50.0% |
| AGAACCCTACACACTCTGGT+TGG | + | chr7_2:6192953-6192972 | Msa1045940:intron | 50.0% | |
| TTCAAGTGCCACAAGGTGGT+TGG | + | chr7_2:6193446-6193465 | Msa1045940:intron | 50.0% | |
| ! | AGGCTTTTCCAACCACCTTG+TGG | - | chr7_2:6193457-6193476 | None:intergenic | 50.0% |
| CATGTGGCAGTTGTGGGTAA+AGG | - | chr7_2:6193489-6193508 | None:intergenic | 50.0% | |
| CTTTACCCACAACTGCCACA+TGG | + | chr7_2:6193487-6193506 | Msa1045940:intron | 50.0% | |
| CGTTATCCATGTGGCAGTTG+TGG | - | chr7_2:6193496-6193515 | None:intergenic | 50.0% | |
| TTGTGGCACTTTGCAGGTGA+TGG | + | chr7_2:6193654-6193673 | Msa1045940:intron | 50.0% | |
| !! | TCAATTCACTGGCGGGCTAT+AGG | - | chr7_2:6194432-6194451 | None:intergenic | 50.0% |
| ! | TTCGCTCACAAGGTGTCTAC+GGG | - | chr7_2:6194893-6194912 | None:intergenic | 50.0% |
| CCCTGTAGTCGCTGGAATAT+TGG | - | chr7_2:6195319-6195338 | None:intergenic | 50.0% | |
| AATGTTGTCCCTGTAGTCGC+TGG | - | chr7_2:6195327-6195346 | None:intergenic | 50.0% | |
| GCGACTACAGGGACAACATT+CGG | + | chr7_2:6195327-6195346 | Msa1045940:CDS | 50.0% | |
| ! | AGGTGAGTAAGTGGAGTGTC+GGG | - | chr7_2:6195485-6195504 | None:intergenic | 50.0% |
| CCAGAGTGTGTAGGGTTCTC+AGG | - | chr7_2:6192952-6192971 | None:intergenic | 55.0% | |
| CCTGAGAACCCTACACACTC+TGG | + | chr7_2:6192949-6192968 | Msa1045940:CDS | 55.0% | |
| !! | CAGTAGGGCTTGGTGCATCA+GGG | - | chr7_2:6193684-6193703 | None:intergenic | 55.0% |
| !! | TCAGTAGGGCTTGGTGCATC+AGG | - | chr7_2:6193685-6193704 | None:intergenic | 55.0% |
| ! | CAAGGTGTCTACGGGATGGA+TGG | - | chr7_2:6194885-6194904 | None:intergenic | 55.0% |
| ! | CTCACAAGGTGTCTACGGGA+TGG | - | chr7_2:6194889-6194908 | None:intergenic | 55.0% |
| !! | GGTGAGTAAGTGGAGTGTCG+GGG | - | chr7_2:6195484-6195503 | None:intergenic | 55.0% |
| CAACGAGAAAGTGGTTCCGG+TGG | + | chr7_2:6195849-6195868 | Msa1045940:CDS | 55.0% | |
| GAGAAAGTGGTTCCGGTGGA+AGG | + | chr7_2:6195853-6195872 | Msa1045940:CDS | 55.0% | |
| AAAGTGGTTCCGGTGGAAGG+AGG | + | chr7_2:6195856-6195875 | Msa1045940:CDS | 55.0% | |
| !! | GATGGTTAGCCTCCTTCCAC+CGG | - | chr7_2:6195868-6195887 | None:intergenic | 55.0% |
| !! | GAGTGTCGGGGTTCGAACAC+CGG | - | chr7_2:6195472-6195491 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 6192731 | 6196080 | 6192731 | ID=Msa1045940;Name=Msa1045940 |
| chr7_2 | mRNA | 6192731 | 6196080 | 6192731 | ID=Msa1045940-mRNA-1;Parent=Msa1045940;Name=Msa1045940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=51|1|1|1|1|1|4|190|173 |
| chr7_2 | exon | 6192731 | 6192970 | 6192731 | ID=Msa1045940-mRNA-1:exon:1400;Parent=Msa1045940-mRNA-1 |
| chr7_2 | exon | 6193670 | 6193731 | 6193670 | ID=Msa1045940-mRNA-1:exon:1401;Parent=Msa1045940-mRNA-1 |
| chr7_2 | exon | 6195308 | 6195348 | 6195308 | ID=Msa1045940-mRNA-1:exon:1402;Parent=Msa1045940-mRNA-1 |
| chr7_2 | exon | 6195661 | 6196080 | 6195661 | ID=Msa1045940-mRNA-1:exon:1403;Parent=Msa1045940-mRNA-1 |
| chr7_2 | five_prime_UTR | 6192731 | 6192781 | 6192731 | ID=Msa1045940-mRNA-1:five_prime_utr;Parent=Msa1045940-mRNA-1 |
| chr7_2 | CDS | 6192782 | 6192970 | 6192782 | ID=Msa1045940-mRNA-1:cds;Parent=Msa1045940-mRNA-1 |
| chr7_2 | CDS | 6193670 | 6193731 | 6193670 | ID=Msa1045940-mRNA-1:cds;Parent=Msa1045940-mRNA-1 |
| chr7_2 | CDS | 6195308 | 6195348 | 6195308 | ID=Msa1045940-mRNA-1:cds;Parent=Msa1045940-mRNA-1 |
| chr7_2 | CDS | 6195661 | 6195890 | 6195661 | ID=Msa1045940-mRNA-1:cds;Parent=Msa1045940-mRNA-1 |
| chr7_2 | three_prime_UTR | 6195891 | 6196080 | 6195891 | ID=Msa1045940-mRNA-1:three_prime_utr;Parent=Msa1045940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
