AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656570 MtrunA17_Chr8g0378721 91.419 303 26 0 1 303 227 529 0.0 586
Msa0656570 MtrunA17_Chr8g0378671 84.385 301 44 2 1 300 227 525 0.0 538
Msa0656570 MtrunA17_Chr8g0378701 83.974 156 25 0 1 156 241 396 5.06e-95 287
Msa0656570 MtrunA17_Chr8g0378691 90.411 146 14 0 156 301 9 154 3.64e-94 276
Msa0656570 MtrunA17_Chr4g0027961 31.464 321 176 13 3 301 241 539 1.19e-34 132
Msa0656570 MtrunA17_Chr3g0136771 24.906 265 158 7 5 239 239 492 3.01e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656570 AT4G25650.1 58.766 308 120 2 1 301 227 534 2.62e-135 394
Msa0656570 AT4G25650.2 54.683 331 120 3 1 301 227 557 9.08e-130 380
Msa0656570 AT3G44880.1 31.402 328 170 15 3 301 233 534 1.78e-33 129
Msa0656570 AT2G24820.1 23.864 264 163 6 5 239 225 479 2.68e-14 73.6

Find 117 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAAGAATATTGGAATT+TGG 0.120742 4_3:-65939541 None:intergenic
TCAGAAGGTGCAAGTTTATT+TGG 0.156557 4_3:-65937268 None:intergenic
CATTAGGAATTCAAATTAAA+TGG 0.162683 4_3:-65939404 None:intergenic
TTGTATTGAGGATCAGTATT+TGG 0.266413 4_3:-65936297 None:intergenic
CACCACATTGAGACTCTTAT+AGG 0.274363 4_3:-65939038 None:intergenic
CTTTGGGTTAATACCGCTTT+TGG 0.280602 4_3:+65939614 Msa0656570:three_prime_UTR
AACAAAGAATATTGGAATTT+GGG 0.288696 4_3:-65939540 None:intergenic
CAACGGTTTCACAGCAAATC+AGG 0.294043 4_3:+65937192 Msa0656570:CDS
CTGCTGTTGCCGGGACTAAC+AGG 0.295981 4_3:-65937437 None:intergenic
CCTGTCCATAAGTTGTTCTC+TGG 0.305227 4_3:-65938349 None:intergenic
ATCCACAGCCCAAAGTTTCT+TGG 0.314198 4_3:-65937476 None:intergenic
GGAAACAGAGATATTGCTTA+TGG 0.316235 4_3:+65936390 Msa0656570:CDS
TGTTGATATTTATTATACTT+TGG 0.320522 4_3:+65939597 Msa0656570:three_prime_UTR
CCGGAATTCGCTAATATTAC+AGG 0.321184 4_3:-65939639 None:intergenic
ATTCATCCAACAAAGAATAT+TGG 0.323851 4_3:-65939548 None:intergenic
GTTGATATTTATTATACTTT+GGG 0.334427 4_3:+65939598 Msa0656570:three_prime_UTR
TATAGCAAGATGTTAGCATT+AGG 0.350375 4_3:-65939420 None:intergenic
ACCTCCCAGAGAACAACTTA+TGG 0.350458 4_3:+65938344 Msa0656570:CDS
CCGTCCTTTACTAGCGTAAT+GGG 0.353585 4_3:+65936369 Msa0656570:exon
CCTGTAATATTAGCGAATTC+CGG 0.356157 4_3:+65939639 Msa0656570:three_prime_UTR
GGGATGTATGTTGCTTTGTT+TGG 0.359314 4_3:+65939479 Msa0656570:three_prime_UTR
CCAAATCAGTCTGCTGTTGC+CGG 0.371564 4_3:-65937447 None:intergenic
GGTGCTTCCCAAGAAACTTT+GGG 0.374338 4_3:+65937468 Msa0656570:CDS
CAAATTCCAATATTCTTTGT+TGG 0.381462 4_3:+65939542 Msa0656570:three_prime_UTR
AGAATGGTATCGTGTGGTTT+TGG 0.391412 4_3:+65936274 Msa0656570:five_prime_UTR
ATCATATCAGTTGCTTCAGT+TGG 0.398957 4_3:+65939076 Msa0656570:CDS
AAGGCAGATGCTCTTGTGAT+TGG 0.399532 4_3:+65938243 Msa0656570:CDS
CTCTGGGAGGTGTAGGAGGA+AGG 0.400762 4_3:-65938332 None:intergenic
CCGGCAACAGCAGACTGATT+TGG 0.404958 4_3:+65937447 Msa0656570:CDS
AAGGACGGATCATCAATTTC+TGG 0.405521 4_3:-65936354 None:intergenic
TGGTGCTTCCCAAGAAACTT+TGG 0.411359 4_3:+65937467 Msa0656570:CDS
ATACCATTCTGCACAGTACT+TGG 0.413715 4_3:-65936261 None:intergenic
ACAAGAGCATCTGCCTTTGT+TGG 0.416937 4_3:-65938237 None:intergenic
AAACATTGCCTTCTGCCAAT+TGG 0.423428 4_3:-65938211 None:intergenic
TCCACAGCCCAAAGTTTCTT+GGG 0.430795 4_3:-65937475 None:intergenic
GTAATAATATCTTTGTATTG+AGG 0.430842 4_3:-65936309 None:intergenic
AGTTCAGAAGAAATTTGCTT+TGG 0.431020 4_3:+65937400 Msa0656570:CDS
CATCAATTTCTGGTATGAAT+GGG 0.432152 4_3:-65936344 None:intergenic
AGCTACAACAAGAAATTCAA+TGG 0.435956 4_3:+65939132 Msa0656570:CDS
TCATCAATTTCTGGTATGAA+TGG 0.439816 4_3:-65936345 None:intergenic
TCCCAAGAAACTTTGGGCTG+TGG 0.443485 4_3:+65937474 Msa0656570:CDS
AAGAAATTCAATGGTTGTGT+TGG 0.446962 4_3:+65939141 Msa0656570:CDS
AATATGCAATTTCAGGTATG+AGG 0.448521 4_3:+65936948 Msa0656570:intron
CTGTCCATAAGTTGTTCTCT+GGG 0.462546 4_3:-65938348 None:intergenic
TATTCTTTGTTGGATGAATG+AGG 0.466628 4_3:+65939552 Msa0656570:three_prime_UTR
TATCTAACTCTTCAATTGAC+AGG 0.476177 4_3:-65937168 None:intergenic
TGCTTTCATTCGCGTTGTCA+CGG 0.476403 4_3:+65939167 Msa0656570:CDS
GAAACAGAGATATTGCTTAT+GGG 0.479650 4_3:+65936391 Msa0656570:CDS
AATATCAACATCTCTAGAAA+AGG 0.481507 4_3:-65939584 None:intergenic
TGCACCTTCTGATGAAACTA+AGG 0.483654 4_3:+65937279 Msa0656570:CDS
GAATGGAGAGGAAAATATAG+TGG 0.487849 4_3:+65938306 Msa0656570:CDS
TTGGTACTTAAGAGGAGCGT+TGG 0.490914 4_3:+65939327 Msa0656570:three_prime_UTR
TCATATCAGTTGCTTCAGTT+GGG 0.492517 4_3:+65939077 Msa0656570:CDS
TCCGTCCTTTACTAGCGTAA+TGG 0.492928 4_3:+65936368 Msa0656570:exon
CAAATCAGTCTGCTGTTGCC+GGG 0.495892 4_3:-65937446 None:intergenic
ATACACACACATAACAAAGT+TGG 0.497222 4_3:-65939262 None:intergenic
ATTTGTATTCCTGTTAGTCC+CGG 0.500956 4_3:+65937428 Msa0656570:CDS
TGGATGTTGGTCAAGCCAAT+TGG 0.502926 4_3:+65938196 Msa0656570:CDS
GTTACCTTAGTTTCATCAGA+AGG 0.511824 4_3:-65937283 None:intergenic
GATTGTTGCCACAATGAAGC+AGG 0.513141 4_3:+65939099 Msa0656570:CDS
TGTGCATATGTAGTATGTGC+AGG 0.520193 4_3:-65936994 None:intergenic
AAATGGTTAAAGAAGTATGC+AGG 0.524010 4_3:+65938273 Msa0656570:CDS
AGTTGTTCTCTGGGAGGTGT+AGG 0.528179 4_3:-65938339 None:intergenic
TCTGGGAGGTGTAGGAGGAA+GGG 0.530338 4_3:-65938331 None:intergenic
TTCTGTTGTGGAACATGTGA+AGG 0.532955 4_3:+65939457 Msa0656570:three_prime_UTR
GTTTCCCATTACGCTAGTAA+AGG 0.533694 4_3:-65936373 None:intergenic
AACTCTTACAATTCACCGTA+TGG 0.536185 4_3:-65939006 None:intergenic
ATGCAGGTGATCAAGTTGAA+TGG 0.536676 4_3:+65938289 Msa0656570:CDS
GTTTCACAGCAAATCAGGGT+TGG 0.537857 4_3:+65937197 Msa0656570:CDS
AACGGTTTCACAGCAAATCA+GGG 0.544637 4_3:+65937193 Msa0656570:CDS
ATGAACACTCCAAAACCAAA+AGG 0.547696 4_3:+65937027 Msa0656570:CDS
ATTCTTTGTTGGATGAATGA+GGG 0.550442 4_3:+65939553 Msa0656570:three_prime_UTR
TTCACATGTTCCACAACAGA+AGG 0.552489 4_3:-65939455 None:intergenic
CCAGAGAACAACTTATGGAC+AGG 0.552971 4_3:+65938349 Msa0656570:CDS
TGGAGATTAATTTCAGCGAA+AGG 0.555282 4_3:-65939242 None:intergenic
TGCCACAATGAAGCAGGGTG+TGG 0.560699 4_3:+65939105 Msa0656570:CDS
TGTTCTCTGGGAGGTGTAGG+AGG 0.562948 4_3:-65938336 None:intergenic
ATTGAAGAGTTAGATATCAA+CGG 0.563093 4_3:+65937175 Msa0656570:CDS
TTGACAAAATTGTACCGCGA+TGG 0.563874 4_3:+65937498 Msa0656570:CDS
ATCAATTTCTGGTATGAATG+GGG 0.563979 4_3:-65936343 None:intergenic
GAAAGGCGTGGTTGTAGTCA+TGG 0.570529 4_3:-65939225 None:intergenic
GTATATGCATAAAAGATGCT+TGG 0.572412 4_3:-65937241 None:intergenic
TACCCAAGTACTGTGCAGAA+TGG 0.574247 4_3:+65936258 Msa0656570:five_prime_UTR
GTGAAAGCTGATAGAGAAGG+AGG 0.578869 4_3:+65937133 Msa0656570:intron
CCCATTACGCTAGTAAAGGA+CGG 0.582016 4_3:-65936369 None:intergenic
AGTACCAATAAAACAAGTAA+CGG 0.587278 4_3:-65939312 None:intergenic
CATACTACATATGCACACTA+CGG 0.590698 4_3:+65937000 Msa0656570:CDS
GGCAATGTTTGTGCCAACAA+AGG 0.593457 4_3:+65938224 Msa0656570:CDS
TACCATTCTGCACAGTACTT+GGG 0.594856 4_3:-65936260 None:intergenic
CGTGGTTGTAGTCATGGTAA+CGG 0.596317 4_3:-65939219 None:intergenic
GGTTCTGATTGAAAACCTCA+TGG 0.598068 4_3:+65936969 Msa0656570:CDS
TATGCATAAAAGATGCTTGG+TGG 0.606284 4_3:-65937238 None:intergenic
ATTAATTTCAGCGAAAGGCG+TGG 0.609911 4_3:-65939237 None:intergenic
CGGAATTCGCTAATATTACA+GGG 0.612500 4_3:-65939638 None:intergenic
TCTTCAATTGACAGGTCAAG+TGG 0.615205 4_3:-65937160 None:intergenic
AATACAAAGATATTATTACA+AGG 0.616833 4_3:+65936313 Msa0656570:five_prime_UTR
AACCACACCCTGCTTCATTG+TGG 0.629575 4_3:-65939107 None:intergenic
TGGTCAAGCCAATTGGCAGA+AGG 0.632277 4_3:+65938203 Msa0656570:CDS
TCCATAAGTTGTTCTCTGGG+AGG 0.632920 4_3:-65938345 None:intergenic
AATATTACAGGGACCAAAAG+CGG 0.633957 4_3:-65939627 None:intergenic
TCTGTTGTGGAACATGTGAA+GGG 0.634943 4_3:+65939458 Msa0656570:three_prime_UTR
TACGTATCTTCTCCATGTTG+AGG 0.640030 4_3:+65937559 Msa0656570:CDS
GAACAGGTACTGGAGCCATA+CGG 0.641416 4_3:+65938991 Msa0656570:intron
CTATAAGAGTCTCAATGTGG+TGG 0.643278 4_3:+65939039 Msa0656570:CDS
GTGCATATGTAGTATGTGCA+GGG 0.644617 4_3:-65936993 None:intergenic
TTTCATTCGCGTTGTCACGG+TGG 0.645969 4_3:+65939170 Msa0656570:CDS
TAAAAGAAATTACCTCAACA+TGG 0.650469 4_3:-65937571 None:intergenic
TCAATTTCTGGTATGAATGG+GGG 0.651927 4_3:-65936342 None:intergenic
ACAGTGAAAGCTGATAGAGA+AGG 0.655364 4_3:+65937130 Msa0656570:intron
GGTGATCAAGTTGAATGGAG+AGG 0.656464 4_3:+65938294 Msa0656570:CDS
TAGTATGTGCAGGGTCCATG+AGG 0.657402 4_3:-65936984 None:intergenic
TCACATGTTCCACAACAGAA+GGG 0.659757 4_3:-65939454 None:intergenic
GGAGCGTTGGAACATTTGTG+TGG 0.668212 4_3:+65939340 Msa0656570:three_prime_UTR
CTGTTGTGGAACATGTGAAG+GGG 0.699583 4_3:+65939459 Msa0656570:three_prime_UTR
ATTGTTGCCACAATGAAGCA+GGG 0.715859 4_3:+65939100 Msa0656570:CDS
AGCCTATAAGAGTCTCAATG+TGG 0.722672 4_3:+65939036 Msa0656570:CDS
CTGTGCAGAATGGTATCGTG+TGG 0.742797 4_3:+65936268 Msa0656570:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAATAAAAATTCAAA+GGG - chr4_3:65936742-65936761 None:intergenic 10.0%
!! TAAAACAAATAAAAATTCAA+AGG - chr4_3:65936743-65936762 None:intergenic 10.0%
!! TAAAAATACCTTTATATAAA+AGG + chr4_3:65936797-65936816 Msa0656570:intron 10.0%
!!! TAAATGAATAATTTTTTAAC+AGG + chr4_3:65936827-65936846 Msa0656570:intron 10.0%
!!! TATTTTTCATAATATAAGTA+AGG - chr4_3:65937327-65937346 None:intergenic 10.0%
!!! TTTTATAATATACAAATCAT+TGG + chr4_3:65937589-65937608 Msa0656570:intron 10.0%
!!! TTTTATATTTGACAAATTTT+AGG - chr4_3:65938924-65938943 None:intergenic 10.0%
!! AAAAAATTATTAATTGCATT+TGG + chr4_3:65938963-65938982 Msa0656570:intron 10.0%
!! AATACAAAGATATTATTACA+AGG + chr4_3:65936313-65936332 Msa0656570:five_prime_UTR 15.0%
!! TTGATAGGAAAAAAAAATAA+TGG + chr4_3:65938176-65938195 Msa0656570:intron 15.0%
!!! AAACATTTTAAAGTAAAAAC+AGG - chr4_3:65938771-65938790 None:intergenic 15.0%
!!! TTAAAATGTTTTACTTTTGT+TGG + chr4_3:65938780-65938799 Msa0656570:intron 15.0%
!! TGTTGATATTTATTATACTT+TGG + chr4_3:65939597-65939616 Msa0656570:three_prime_UTR 15.0%
!! GTTGATATTTATTATACTTT+GGG + chr4_3:65939598-65939617 Msa0656570:three_prime_UTR 15.0%
!! GTAATAATATCTTTGTATTG+AGG - chr4_3:65936312-65936331 None:intergenic 20.0%
!! ATTTAACTCGTAATTTCTTA+GGG - chr4_3:65936677-65936696 None:intergenic 20.0%
!! TATTTAACTCGTAATTTCTT+AGG - chr4_3:65936678-65936697 None:intergenic 20.0%
!! AAATACCTTTATATAAAAGG+TGG + chr4_3:65936800-65936819 Msa0656570:intron 20.0%
!!! TAAAAGATCTGTGATTTTAT+AGG + chr4_3:65936859-65936878 Msa0656570:intron 20.0%
!!! AAAAGATCTGTGATTTTATA+GGG + chr4_3:65936860-65936879 Msa0656570:intron 20.0%
!! GTGTCATATATAAAACAAAT+AGG - chr4_3:65937090-65937109 None:intergenic 20.0%
!!! AATATGCAACAAATTTTATG+TGG + chr4_3:65937343-65937362 Msa0656570:intron 20.0%
!!! ATATGCAACAAATTTTATGT+GGG + chr4_3:65937344-65937363 Msa0656570:intron 20.0%
!!! TGGATAATATTTTTCTTCAA+CGG - chr4_3:65937659-65937678 None:intergenic 20.0%
!! TTTCTTCTGATTACTTTATT+AGG + chr4_3:65937738-65937757 Msa0656570:intron 20.0%
!! GATATAATTACTAAAATGCT+TGG + chr4_3:65937800-65937819 Msa0656570:intron 20.0%
!!! GAAAAAAAAATAATGGATGT+TGG + chr4_3:65938183-65938202 Msa0656570:CDS 20.0%
!! CTTAAAACTTCACATATTAA+AGG - chr4_3:65938446-65938465 None:intergenic 20.0%
!!! AATATGTGAAGTTTTAAGTA+TGG + chr4_3:65938448-65938467 Msa0656570:intron 20.0%
!! CATTAGGAATTCAAATTAAA+TGG - chr4_3:65939407-65939426 None:intergenic 20.0%
!! AACAAAGAATATTGGAATTT+GGG - chr4_3:65939543-65939562 None:intergenic 20.0%
!! TTTCTTTTGTAGAACTCTAA+TGG + chr4_3:65936444-65936463 Msa0656570:intron 25.0%
!! TTCTTTTGTAGAACTCTAAT+GGG + chr4_3:65936445-65936464 Msa0656570:intron 25.0%
!! GTCATTGATAATTGATTGAT+AGG + chr4_3:65936565-65936584 Msa0656570:intron 25.0%
!!! AAGCAAATACTATGGTTTTT+TGG - chr4_3:65936904-65936923 None:intergenic 25.0%
! AAAAAACCATAGTATTTGCT+TGG + chr4_3:65936903-65936922 Msa0656570:intron 25.0%
! AATATACCAAGCAAATACTA+TGG - chr4_3:65936912-65936931 None:intergenic 25.0%
! TTTGTTGAATATGCAATTTC+AGG + chr4_3:65936941-65936960 Msa0656570:intron 25.0%
!! TATCATATATGCATACCTTT+TGG - chr4_3:65937045-65937064 None:intergenic 25.0%
! ATTGAAGAGTTAGATATCAA+CGG + chr4_3:65937175-65937194 Msa0656570:CDS 25.0%
!! TTTTCATGTTAGACAAAACT+TGG + chr4_3:65937523-65937542 Msa0656570:CDS 25.0%
! TAAAAGAAATTACCTCAACA+TGG - chr4_3:65937574-65937593 None:intergenic 25.0%
! ATATTGTTATGTAACAGTAC+TGG - chr4_3:65937679-65937698 None:intergenic 25.0%
! CTTCTTGAATTATGAAAGAT+TGG + chr4_3:65937925-65937944 Msa0656570:intron 25.0%
!!! TTGTGATTGGTTTTAGAAAA+TGG + chr4_3:65938256-65938275 Msa0656570:CDS 25.0%
! CATATGATTGCATTTAAACA+TGG + chr4_3:65938379-65938398 Msa0656570:intron 25.0%
! GTCAATTCAAATAAGAAAAG+TGG - chr4_3:65938677-65938696 None:intergenic 25.0%
!!! CTTTTGACTTGAATTTTGAA+TGG + chr4_3:65938696-65938715 Msa0656570:intron 25.0%
! AAATTCTTCACTTCAAATCA+CGG - chr4_3:65938882-65938901 None:intergenic 25.0%
! AGTACCAATAAAACAAGTAA+CGG - chr4_3:65939315-65939334 None:intergenic 25.0%
!!! TTGTTTTATTGGTACTTAAG+AGG + chr4_3:65939319-65939338 Msa0656570:three_prime_UTR 25.0%
! CAACAAAGAATATTGGAATT+TGG - chr4_3:65939544-65939563 None:intergenic 25.0%
! CAAATTCCAATATTCTTTGT+TGG + chr4_3:65939542-65939561 Msa0656570:three_prime_UTR 25.0%
! ATTCATCCAACAAAGAATAT+TGG - chr4_3:65939551-65939570 None:intergenic 25.0%
!! AATATCAACATCTCTAGAAA+AGG - chr4_3:65939587-65939606 None:intergenic 25.0%
TTGTATTGAGGATCAGTATT+TGG - chr4_3:65936300-65936319 None:intergenic 30.0%
!! ATCAATTTCTGGTATGAATG+GGG - chr4_3:65936346-65936365 None:intergenic 30.0%
!! CATCAATTTCTGGTATGAAT+GGG - chr4_3:65936347-65936366 None:intergenic 30.0%
!! TCATCAATTTCTGGTATGAA+TGG - chr4_3:65936348-65936367 None:intergenic 30.0%
GAAACAGAGATATTGCTTAT+GGG + chr4_3:65936391-65936410 Msa0656570:CDS 30.0%
! AGTCTCCACCTTTTATATAA+AGG - chr4_3:65936808-65936827 None:intergenic 30.0%
! AATATGCAATTTCAGGTATG+AGG + chr4_3:65936948-65936967 Msa0656570:intron 30.0%
!!! ATATGCATACCTTTTGGTTT+TGG - chr4_3:65937039-65937058 None:intergenic 30.0%
TATCTAACTCTTCAATTGAC+AGG - chr4_3:65937171-65937190 None:intergenic 30.0%
GTATATGCATAAAAGATGCT+TGG - chr4_3:65937244-65937263 None:intergenic 30.0%
! AGTTCAGAAGAAATTTGCTT+TGG + chr4_3:65937400-65937419 Msa0656570:CDS 30.0%
!! GCGTAATTGATTTTTCATAC+CGG + chr4_3:65937902-65937921 Msa0656570:intron 30.0%
TCTTTCATAATTCAAGAAGC+CGG - chr4_3:65937924-65937943 None:intergenic 30.0%
!! CATCCATTTTTCTTAGTCTT+GGG + chr4_3:65937992-65938011 Msa0656570:intron 30.0%
TCAACAATTCGACCAAAATA+AGG - chr4_3:65938071-65938090 None:intergenic 30.0%
! AAATGGTTAAAGAAGTATGC+AGG + chr4_3:65938273-65938292 Msa0656570:CDS 30.0%
ATACGATTCACATGTATAGT+AGG - chr4_3:65938484-65938503 None:intergenic 30.0%
ATTGCATTTGGTATTTGAAC+AGG + chr4_3:65938975-65938994 Msa0656570:intron 30.0%
AGCTACAACAAGAAATTCAA+TGG + chr4_3:65939132-65939151 Msa0656570:CDS 30.0%
AAGAAATTCAATGGTTGTGT+TGG + chr4_3:65939141-65939160 Msa0656570:CDS 30.0%
ATACACACACATAACAAAGT+TGG - chr4_3:65939265-65939284 None:intergenic 30.0%
!!! AAAGCCGTTACTTGTTTTAT+TGG + chr4_3:65939308-65939327 Msa0656570:three_prime_UTR 30.0%
TATAGCAAGATGTTAGCATT+AGG - chr4_3:65939423-65939442 None:intergenic 30.0%
TATTCTTTGTTGGATGAATG+AGG + chr4_3:65939552-65939571 Msa0656570:three_prime_UTR 30.0%
ATTCTTTGTTGGATGAATGA+GGG + chr4_3:65939553-65939572 Msa0656570:three_prime_UTR 30.0%
!! TCAATTTCTGGTATGAATGG+GGG - chr4_3:65936345-65936364 None:intergenic 35.0%
GGAAACAGAGATATTGCTTA+TGG + chr4_3:65936390-65936409 Msa0656570:CDS 35.0%
AACATGCAAGTTACGATCAT+GGG - chr4_3:65936651-65936670 None:intergenic 35.0%
TAACATGCAAGTTACGATCA+TGG - chr4_3:65936652-65936671 None:intergenic 35.0%
CATACTACATATGCACACTA+CGG + chr4_3:65937000-65937019 Msa0656570:CDS 35.0%
ATGAACACTCCAAAACCAAA+AGG + chr4_3:65937027-65937046 Msa0656570:CDS 35.0%
TATGCATAAAAGATGCTTGG+TGG - chr4_3:65937241-65937260 None:intergenic 35.0%
! TCAGAAGGTGCAAGTTTATT+TGG - chr4_3:65937271-65937290 None:intergenic 35.0%
GTTACCTTAGTTTCATCAGA+AGG - chr4_3:65937286-65937305 None:intergenic 35.0%
ATTTGTATTCCTGTTAGTCC+CGG + chr4_3:65937428-65937447 Msa0656570:CDS 35.0%
CTAACATGAAAAATCCATCG+CGG - chr4_3:65937515-65937534 None:intergenic 35.0%
GATTGAACCAACAAATCAAC+AGG - chr4_3:65937616-65937635 None:intergenic 35.0%
CCAAGACTAAGAAAAATGGA+TGG - chr4_3:65937994-65938013 None:intergenic 35.0%
!! CCATCCATTTTTCTTAGTCT+TGG + chr4_3:65937991-65938010 Msa0656570:intron 35.0%
TCACCCAAGACTAAGAAAAA+TGG - chr4_3:65937998-65938017 None:intergenic 35.0%
!!! GTGAGCAATAGTACTTTTTC+AGG + chr4_3:65938014-65938033 Msa0656570:intron 35.0%
!! TCGTGTTTCCTACCTTATTT+TGG + chr4_3:65938056-65938075 Msa0656570:intron 35.0%
CAATTCGACCAAAATAAGGT+AGG - chr4_3:65938067-65938086 None:intergenic 35.0%
GAATGGAGAGGAAAATATAG+TGG + chr4_3:65938306-65938325 Msa0656570:CDS 35.0%
! TCGCTAGTGCATATCTATTT+TGG + chr4_3:65938541-65938560 Msa0656570:intron 35.0%
! TGTCGTCAATTTTGTATAGC+TGG + chr4_3:65938651-65938670 Msa0656570:intron 35.0%
TTTGGTATTTGAACAGGTAC+TGG + chr4_3:65938981-65939000 Msa0656570:intron 35.0%
AACTCTTACAATTCACCGTA+TGG - chr4_3:65939009-65939028 None:intergenic 35.0%
ATCATATCAGTTGCTTCAGT+TGG + chr4_3:65939076-65939095 Msa0656570:CDS 35.0%
TCATATCAGTTGCTTCAGTT+GGG + chr4_3:65939077-65939096 Msa0656570:CDS 35.0%
TGGAGATTAATTTCAGCGAA+AGG - chr4_3:65939245-65939264 None:intergenic 35.0%
! AATTGTTTTCCCTTCTGTTG+TGG + chr4_3:65939445-65939464 Msa0656570:three_prime_UTR 35.0%
TTGGAAAAATCATGCAGATG+AGG + chr4_3:65939498-65939517 Msa0656570:three_prime_UTR 35.0%
AATATTACAGGGACCAAAAG+CGG - chr4_3:65939630-65939649 None:intergenic 35.0%
CGGAATTCGCTAATATTACA+GGG - chr4_3:65939641-65939660 None:intergenic 35.0%
!!! AGCAGCTACACATGCTTTTT+TGG - chr4_3:65936238-65936257 None:intergenic 40.0%
TACCATTCTGCACAGTACTT+GGG - chr4_3:65936263-65936282 None:intergenic 40.0%
ATACCATTCTGCACAGTACT+TGG - chr4_3:65936264-65936283 None:intergenic 40.0%
! AGAATGGTATCGTGTGGTTT+TGG + chr4_3:65936274-65936293 Msa0656570:five_prime_UTR 40.0%
AAGGACGGATCATCAATTTC+TGG - chr4_3:65936357-65936376 None:intergenic 40.0%
GTTTCCCATTACGCTAGTAA+AGG - chr4_3:65936376-65936395 None:intergenic 40.0%
CTCCACATTTGACAAAAGCA+TGG + chr4_3:65936765-65936784 Msa0656570:intron 40.0%
! CACCATGCTTTTGTCAAATG+TGG - chr4_3:65936770-65936789 None:intergenic 40.0%
! GGTTCTGATTGAAAACCTCA+TGG + chr4_3:65936969-65936988 Msa0656570:CDS 40.0%
GTGCATATGTAGTATGTGCA+GGG - chr4_3:65936996-65937015 None:intergenic 40.0%
TGTGCATATGTAGTATGTGC+AGG - chr4_3:65936997-65937016 None:intergenic 40.0%
ACAGTGAAAGCTGATAGAGA+AGG + chr4_3:65937130-65937149 Msa0656570:intron 40.0%
TCTTCAATTGACAGGTCAAG+TGG - chr4_3:65937163-65937182 None:intergenic 40.0%
AACGGTTTCACAGCAAATCA+GGG + chr4_3:65937193-65937212 Msa0656570:CDS 40.0%
TGCACCTTCTGATGAAACTA+AGG + chr4_3:65937279-65937298 Msa0656570:CDS 40.0%
TTGACAAAATTGTACCGCGA+TGG + chr4_3:65937498-65937517 Msa0656570:CDS 40.0%
TACGTATCTTCTCCATGTTG+AGG + chr4_3:65937559-65937578 Msa0656570:CDS 40.0%
!! CATTGGTCCTGTTGATTTGT+TGG + chr4_3:65937606-65937625 Msa0656570:intron 40.0%
TTATGTGCACAATAGCTGCT+AGG + chr4_3:65937826-65937845 Msa0656570:intron 40.0%
AAACATTGCCTTCTGCCAAT+TGG - chr4_3:65938214-65938233 None:intergenic 40.0%
!! ATGCAGGTGATCAAGTTGAA+TGG + chr4_3:65938289-65938308 Msa0656570:CDS 40.0%
CTGTCCATAAGTTGTTCTCT+GGG - chr4_3:65938351-65938370 None:intergenic 40.0%
GAATCACTACCTAGTGTAGT+CGG + chr4_3:65938620-65938639 Msa0656570:intron 40.0%
AAAAAGAAGCCGACTACACT+AGG - chr4_3:65938632-65938651 None:intergenic 40.0%
AGCCTATAAGAGTCTCAATG+TGG + chr4_3:65939036-65939055 Msa0656570:CDS 40.0%
CACCACATTGAGACTCTTAT+AGG - chr4_3:65939041-65939060 None:intergenic 40.0%
CTATAAGAGTCTCAATGTGG+TGG + chr4_3:65939039-65939058 Msa0656570:CDS 40.0%
ATTGTTGCCACAATGAAGCA+GGG + chr4_3:65939100-65939119 Msa0656570:CDS 40.0%
ATTAATTTCAGCGAAAGGCG+TGG - chr4_3:65939240-65939259 None:intergenic 40.0%
TCACATGTTCCACAACAGAA+GGG - chr4_3:65939457-65939476 None:intergenic 40.0%
TTCACATGTTCCACAACAGA+AGG - chr4_3:65939458-65939477 None:intergenic 40.0%
TTCTGTTGTGGAACATGTGA+AGG + chr4_3:65939457-65939476 Msa0656570:three_prime_UTR 40.0%
TCTGTTGTGGAACATGTGAA+GGG + chr4_3:65939458-65939477 Msa0656570:three_prime_UTR 40.0%
!! GGGATGTATGTTGCTTTGTT+TGG + chr4_3:65939479-65939498 Msa0656570:three_prime_UTR 40.0%
!! CTTTGGGTTAATACCGCTTT+TGG + chr4_3:65939614-65939633 Msa0656570:three_prime_UTR 40.0%
CCGGAATTCGCTAATATTAC+AGG - chr4_3:65939642-65939661 None:intergenic 40.0%
! TACCCAAGTACTGTGCAGAA+TGG + chr4_3:65936258-65936277 Msa0656570:five_prime_UTR 45.0%
TCCGTCCTTTACTAGCGTAA+TGG + chr4_3:65936368-65936387 Msa0656570:exon 45.0%
CCCATTACGCTAGTAAAGGA+CGG - chr4_3:65936372-65936391 None:intergenic 45.0%
CCGTCCTTTACTAGCGTAAT+GGG + chr4_3:65936369-65936388 Msa0656570:exon 45.0%
GTGAAAGCTGATAGAGAAGG+AGG + chr4_3:65937133-65937152 Msa0656570:intron 45.0%
CAACGGTTTCACAGCAAATC+AGG + chr4_3:65937192-65937211 Msa0656570:CDS 45.0%
GTTTCACAGCAAATCAGGGT+TGG + chr4_3:65937197-65937216 Msa0656570:CDS 45.0%
TGGTGCTTCCCAAGAAACTT+TGG + chr4_3:65937467-65937486 Msa0656570:CDS 45.0%
GGTGCTTCCCAAGAAACTTT+GGG + chr4_3:65937468-65937487 Msa0656570:CDS 45.0%
TCCACAGCCCAAAGTTTCTT+GGG - chr4_3:65937478-65937497 None:intergenic 45.0%
ATCCACAGCCCAAAGTTTCT+TGG - chr4_3:65937479-65937498 None:intergenic 45.0%
TGGATGTTGGTCAAGCCAAT+TGG + chr4_3:65938196-65938215 Msa0656570:CDS 45.0%
GGCAATGTTTGTGCCAACAA+AGG + chr4_3:65938224-65938243 Msa0656570:CDS 45.0%
!! ACAAGAGCATCTGCCTTTGT+TGG - chr4_3:65938240-65938259 None:intergenic 45.0%
AAGGCAGATGCTCTTGTGAT+TGG + chr4_3:65938243-65938262 Msa0656570:CDS 45.0%
!! GGTGATCAAGTTGAATGGAG+AGG + chr4_3:65938294-65938313 Msa0656570:CDS 45.0%
ACCTCCCAGAGAACAACTTA+TGG + chr4_3:65938344-65938363 Msa0656570:CDS 45.0%
TCCATAAGTTGTTCTCTGGG+AGG - chr4_3:65938348-65938367 None:intergenic 45.0%
CCTGTCCATAAGTTGTTCTC+TGG - chr4_3:65938352-65938371 None:intergenic 45.0%
CCAGAGAACAACTTATGGAC+AGG + chr4_3:65938349-65938368 Msa0656570:CDS 45.0%
GATTGTTGCCACAATGAAGC+AGG + chr4_3:65939099-65939118 Msa0656570:CDS 45.0%
TGCTTTCATTCGCGTTGTCA+CGG + chr4_3:65939167-65939186 Msa0656570:CDS 45.0%
CGTGGTTGTAGTCATGGTAA+CGG - chr4_3:65939222-65939241 None:intergenic 45.0%
! TTGGTACTTAAGAGGAGCGT+TGG + chr4_3:65939327-65939346 Msa0656570:three_prime_UTR 45.0%
CTGTTGTGGAACATGTGAAG+GGG + chr4_3:65939459-65939478 Msa0656570:three_prime_UTR 45.0%
!!! AAAGTTTTTTTTTTAATAAA+AGG - chr4_3:65937963-65937982 None:intergenic 5.0%
!! ATTAAAAAAAAAACTTTAAT+AGG + chr4_3:65937966-65937985 Msa0656570:intron 5.0%
!!! TTTTAATTATTTATTTTGAT+AGG + chr4_3:65938161-65938180 Msa0656570:intron 5.0%
CTGTGCAGAATGGTATCGTG+TGG + chr4_3:65936268-65936287 Msa0656570:five_prime_UTR 50.0%
TAGTATGTGCAGGGTCCATG+AGG - chr4_3:65936987-65937006 None:intergenic 50.0%
CAAATCAGTCTGCTGTTGCC+GGG - chr4_3:65937449-65937468 None:intergenic 50.0%
CCAAATCAGTCTGCTGTTGC+CGG - chr4_3:65937450-65937469 None:intergenic 50.0%
TCCCAAGAAACTTTGGGCTG+TGG + chr4_3:65937474-65937493 Msa0656570:CDS 50.0%
GTGCACAATAGCTGCTAGGT+TGG + chr4_3:65937830-65937849 Msa0656570:intron 50.0%
TGGTCAAGCCAATTGGCAGA+AGG + chr4_3:65938203-65938222 Msa0656570:CDS 50.0%
! AGTTGTTCTCTGGGAGGTGT+AGG - chr4_3:65938342-65938361 None:intergenic 50.0%
!! GAACAGGTACTGGAGCCATA+CGG + chr4_3:65938991-65939010 Msa0656570:intron 50.0%
AACCACACCCTGCTTCATTG+TGG - chr4_3:65939110-65939129 None:intergenic 50.0%
TTTCATTCGCGTTGTCACGG+TGG + chr4_3:65939170-65939189 Msa0656570:CDS 50.0%
! GAAAGGCGTGGTTGTAGTCA+TGG - chr4_3:65939228-65939247 None:intergenic 50.0%
!! GGAGCGTTGGAACATTTGTG+TGG + chr4_3:65939340-65939359 Msa0656570:three_prime_UTR 50.0%
CCGGCAACAGCAGACTGATT+TGG + chr4_3:65937447-65937466 Msa0656570:CDS 55.0%
! TCTGGGAGGTGTAGGAGGAA+GGG - chr4_3:65938334-65938353 None:intergenic 55.0%
! TGTTCTCTGGGAGGTGTAGG+AGG - chr4_3:65938339-65938358 None:intergenic 55.0%
TGCCACAATGAAGCAGGGTG+TGG + chr4_3:65939105-65939124 Msa0656570:CDS 55.0%
CTGCTGTTGCCGGGACTAAC+AGG - chr4_3:65937440-65937459 None:intergenic 60.0%
! CTCTGGGAGGTGTAGGAGGA+AGG - chr4_3:65938335-65938354 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65936222 65939661 65936222 ID=Msa0656570;Name=Msa0656570
chr4_3 mRNA 65936222 65939661 65936222 ID=Msa0656570-mRNA-1;Parent=Msa0656570;Name=Msa0656570-mRNA-1;_AED=0.36;_eAED=0.36;_QI=165|1|1|1|1|1|6|409|303
chr4_3 exon 65936222 65936412 65936222 ID=Msa0656570-mRNA-1:exon:18815;Parent=Msa0656570-mRNA-1
chr4_3 exon 65936963 65937048 65936963 ID=Msa0656570-mRNA-1:exon:18816;Parent=Msa0656570-mRNA-1
chr4_3 exon 65937134 65937300 65937134 ID=Msa0656570-mRNA-1:exon:18817;Parent=Msa0656570-mRNA-1
chr4_3 exon 65937392 65937580 65937392 ID=Msa0656570-mRNA-1:exon:18818;Parent=Msa0656570-mRNA-1
chr4_3 exon 65938183 65938370 65938183 ID=Msa0656570-mRNA-1:exon:18819;Parent=Msa0656570-mRNA-1
chr4_3 exon 65938997 65939661 65938997 ID=Msa0656570-mRNA-1:exon:18820;Parent=Msa0656570-mRNA-1
chr4_3 five_prime_UTR 65936222 65936386 65936222 ID=Msa0656570-mRNA-1:five_prime_utr;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65936387 65936412 65936387 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65936963 65937048 65936963 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65937134 65937300 65937134 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65937392 65937580 65937392 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65938183 65938370 65938183 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 CDS 65938997 65939252 65938997 ID=Msa0656570-mRNA-1:cds;Parent=Msa0656570-mRNA-1
chr4_3 three_prime_UTR 65939253 65939661 65939253 ID=Msa0656570-mRNA-1:three_prime_utr;Parent=Msa0656570-mRNA-1
Gene Sequence

>Msa0656570

ATGGGAAACAGAGATATTGCTTATGGGTATGAGGTTCTGATTGAAAACCTCATGGACCCTGCACATACTACATATGCACACTACGGAATAATGAACACTCCAAAACCAAAAGTGAAAGCTGATAGAGAAGGAGGAAGACCACTTGACCTGTCAATTGAAGAGTTAGATATCAACGGTTTCACAGCAAATCAGGGTTGGAGCAAAAGCAAGTTTATGCCACCAAGCATCTTTTATGCATATACTGATCCAAATAAACTTGCACCTTCTGATGAAACTAAGAATTCATCAGTTCAGAAGAAATTTGCTTTGGTCTTTATTTGTATTCCTGTTAGTCCCGGCAACAGCAGACTGATTTGGTGCTTCCCAAGAAACTTTGGGCTGTGGATTGACAAAATTGTACCGCGATGGATTTTTCATGTTAGACAAAACTTGGTTCTAGATTCAGATACGTATCTTCTCCATGTTGAGGAAAAAAAAATAATGGATGTTGGTCAAGCCAATTGGCAGAAGGCAATGTTTGTGCCAACAAAGGCAGATGCTCTTGTGATTGGTTTTAGAAAATGGTTAAAGAAGTATGCAGGTGATCAAGTTGAATGGAGAGGAAAATATAGTGGAGCCCTTCCTCCTACACCTCCCAGAGAACAACTTATGGACAGGTACTGGAGCCATACGGTGAATTGTAAGAGTTGCAATTTAGCCTATAAGAGTCTCAATGTGGTGGAAGTGATGCTGCAGATCATATCAGTTGCTTCAGTTGGGATTGTTGCCACAATGAAGCAGGGTGTGGTTTCAGCTACAACAAGAAATTCAATGGTTGTGTTGGCAGTGCTTTCATTCGCGTTGTCACGGTGGTTAGCTCACTTCATATACAAAAACTTCCGTTACCATGACTACAACCACGCCTTTCGCTGA

Protein sequence

>Msa0656570

MGNRDIAYGYEVLIENLMDPAHTTYAHYGIMNTPKPKVKADREGGRPLDLSIEELDINGFTANQGWSKSKFMPPSIFYAYTDPNKLAPSDETKNSSVQKKFALVFICIPVSPGNSRLIWCFPRNFGLWIDKIVPRWIFHVRQNLVLDSDTYLLHVEEKKIMDVGQANWQKAMFVPTKADALVIGFRKWLKKYAGDQVEWRGKYSGALPPTPPREQLMDRYWSHTVNCKSCNLAYKSLNVVEVMLQIISVASVGIVATMKQGVVSATTRNSMVVLAVLSFALSRWLAHFIYKNFRYHDYNHAFR*