AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139930 MtrunA17_Chr7g0214771 88.372 172 20 0 2 173 7 178 4.71e-113 318
Msa0139930 MtrunA17_Chr7g0214761 88.439 173 20 0 1 173 6 178 6.27e-112 315
Msa0139930 MtrunA17_Chr6g0461711 67.647 170 54 1 2 171 7 175 8.36e-82 239
Msa0139930 MtrunA17_Chr7g0252784 66.667 168 55 1 2 169 7 173 1.21e-79 234
Msa0139930 MtrunA17_Chr7g0252800 61.905 168 63 1 2 169 8 174 5.78e-73 217
Msa0139930 MtrunA17_Chr7g0252811 60.736 163 62 2 8 170 35 195 8.72e-69 207
Msa0139930 MtrunA17_Chr6g0472451 56.805 169 72 1 1 169 5 172 1.02e-66 201
Msa0139930 MtrunA17_Chr7g0266201 55.689 167 72 2 4 169 9 174 1.69e-62 190
Msa0139930 MtrunA17_Chr1g0178751 53.125 160 72 2 2 159 7 165 1.12e-58 181
Msa0139930 MtrunA17_Chr2g0321301 48.521 169 85 2 2 169 6 173 1.11e-56 176
Msa0139930 MtrunA17_Chr8g0392741 48.824 170 84 3 1 169 6 173 8.60e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139930 AT1G65480.2 64.118 170 60 1 2 171 51 219 1.41e-80 238
Msa0139930 AT1G65480.1 64.118 170 60 1 2 171 7 175 1.42e-80 236
Msa0139930 AT4G20370.1 62.130 169 63 1 2 170 7 174 2.42e-76 226
Msa0139930 AT5G62040.1 53.988 163 74 1 4 165 8 170 9.23e-61 186
Msa0139930 AT5G03840.1 53.892 167 75 2 4 169 12 177 4.71e-59 182
Msa0139930 AT2G27550.1 49.704 169 84 1 2 169 7 175 1.59e-57 178
Msa0139930 AT1G18100.1 50.292 171 81 3 1 169 5 173 6.96e-51 161

Find 57 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTGGTGGGTTAACTATT+TGG 0.101664 1_3:+73885160 None:intergenic
TTACAAATTCAGTGTCTTTC+AGG 0.122353 1_3:-73885236 Msa0139930:CDS
TGCTTTGATAATTTGCTTAT+TGG 0.192847 1_3:+73885336 None:intergenic
AAAGACACTGAATTTGTAAA+AGG 0.219593 1_3:+73885240 None:intergenic
CTTGTTGTTGGTGGTGTAAT+TGG 0.225955 1_3:-73885276 Msa0139930:CDS
TTTGCAGAAGTTTACAATCT+TGG 0.279344 1_3:-73882290 Msa0139930:CDS
TGAATCCCTCTTGTTGGTCT+TGG 0.316500 1_3:+73882398 None:intergenic
TCTTGGTGGGTTAACTATTT+GGG 0.334065 1_3:+73885161 None:intergenic
CCCTGTAGTCGCTGGAATAT+TGG 0.340527 1_3:+73882769 None:intergenic
TCAGTAGGGCTTGGTGCATC+AGG 0.356176 1_3:+73884390 None:intergenic
TACAGGTATTCCCTCATATT+AGG 0.366238 1_3:+73884366 None:intergenic
TTGTGGTTATAATTATTAGA+TGG 0.404057 1_3:+73882202 None:intergenic
TTTCCACCAACTTGAACTCT+TGG 0.407751 1_3:+73885144 None:intergenic
CCAGAGTGTGTAGGGTTCTC+AGG 0.411027 1_3:+73885118 None:intergenic
TGTTGTTTAAGCAACCTTGT+AGG 0.415361 1_3:-73882361 Msa0139930:CDS
CCACCAACTTGAACTCTTGG+TGG 0.429744 1_3:+73885147 None:intergenic
TACAAATTCAGTGTCTTTCA+GGG 0.444238 1_3:-73885235 Msa0139930:CDS
GCCCTACTGATCCTAATATG+AGG 0.445100 1_3:-73884377 Msa0139930:CDS
TGTCAACGAGAAAGTGGTTC+CGG 0.448740 1_3:-73882239 Msa0139930:CDS
ACCAATATTCCAGCGACTAC+AGG 0.450659 1_3:-73882770 Msa0139930:CDS
ATATGAGGGAATACCTGTAT+TGG 0.453295 1_3:-73884362 Msa0139930:intron
ACACGATGAATCCCTCTTGT+TGG 0.458184 1_3:+73882392 None:intergenic
TTCAATTGTCAACGAGAAAG+TGG 0.476637 1_3:-73882245 Msa0139930:CDS
TTGAAATAGAGAGCAGCAAC+AGG 0.483630 1_3:+73882263 None:intergenic
ATGAATTCCCTTGTTGTTGG+TGG 0.489339 1_3:-73885285 Msa0139930:CDS
CTCAAGGTTTGTGGTTGTTG+TGG 0.492802 1_3:+73882185 None:intergenic
TATCTACTACTCAAGGTTTG+TGG 0.499893 1_3:+73882176 None:intergenic
AAATTCAAACTTACCAATAC+AGG 0.502537 1_3:+73884349 None:intergenic
GCGACTACAGGGACAACATT+CGG 0.503478 1_3:-73882758 Msa0139930:intron
AATGTTGTCCCTGTAGTCGC+TGG 0.506880 1_3:+73882761 None:intergenic
CACCAACTTGAACTCTTGGT+GGG 0.509185 1_3:+73885148 None:intergenic
ATATTAGGATCAGTAGGGCT+TGG 0.509781 1_3:+73884381 None:intergenic
AAGACACTGAATTTGTAAAA+GGG 0.531689 1_3:+73885241 None:intergenic
GCTAATATAGTGTGCCTACA+AGG 0.535198 1_3:+73882347 None:intergenic
CCACCAAGAGTTCAAGTTGG+TGG 0.538019 1_3:-73885147 Msa0139930:CDS
TATACCAACCAGAGTGTGTA+GGG 0.538571 1_3:+73885110 None:intergenic
GATGGTTAGCCTCCTTCCAC+CGG 0.542124 1_3:+73882220 None:intergenic
GAGAAAGTGGTTCCGGTGGA+AGG 0.542228 1_3:-73882232 Msa0139930:CDS
CAGTAGGGCTTGGTGCATCA+GGG 0.543914 1_3:+73884391 None:intergenic
TCAATGAATTCCCTTGTTGT+TGG 0.548648 1_3:-73885288 Msa0139930:CDS
CCCTCATATTAGGATCAGTA+GGG 0.548872 1_3:+73884376 None:intergenic
TTATAGATATCTACTACTCA+AGG 0.561415 1_3:+73882169 None:intergenic
CCCTACTGATCCTAATATGA+GGG 0.564661 1_3:-73884376 Msa0139930:CDS
GAAAATCCAAGACCAACAAG+AGG 0.566107 1_3:-73882404 Msa0139930:CDS
CCTGAGAACCCTACACACTC+TGG 0.566847 1_3:-73885118 Msa0139930:intron
CAATTACACCACCAACAACA+AGG 0.568356 1_3:+73885277 None:intergenic
TCCCTCATATTAGGATCAGT+AGG 0.580960 1_3:+73884375 None:intergenic
CCAATATTCCAGCGACTACA+GGG 0.601358 1_3:-73882769 Msa0139930:CDS
GGTGGGTTAACTATTTGGGA+CGG 0.602001 1_3:+73885165 None:intergenic
AAAATCCAAGACCAACAAGA+GGG 0.616950 1_3:-73882403 Msa0139930:CDS
ATATACCAACCAGAGTGTGT+AGG 0.622090 1_3:+73885109 None:intergenic
CAACGAGAAAGTGGTTCCGG+TGG 0.628002 1_3:-73882236 Msa0139930:CDS
AAAGTGGTTCCGGTGGAAGG+AGG 0.632372 1_3:-73882229 Msa0139930:CDS
AACCCACCAAGAGTTCAAGT+TGG 0.642757 1_3:-73885150 Msa0139930:CDS
AATAACAAAGAAGTCATCAA+CGG 0.645377 1_3:-73885201 Msa0139930:CDS
AATTACACCACCAACAACAA+GGG 0.656428 1_3:+73885278 None:intergenic
AACAAAGAAGTCATCAACGG+TGG 0.689200 1_3:-73885198 Msa0139930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATATTTTTATTTTGTTT+CGG - chr1_3:73883078-73883097 Msa0139930:intron 10.0%
!! TTATTTATTAAAGATCTATT+TGG + chr1_3:73883419-73883438 None:intergenic 10.0%
!! ATTCCAAAAATATTATAAAT+TGG + chr1_3:73883583-73883602 None:intergenic 10.0%
!!! TAATATTTTTGGAATTTATA+AGG - chr1_3:73883588-73883607 Msa0139930:intron 10.0%
!! TTGTATAAATATTCAAAAAA+TGG + chr1_3:73883623-73883642 None:intergenic 10.0%
!!! AATTTTTTAATAATTTAGCA+TGG - chr1_3:73883778-73883797 Msa0139930:intron 10.0%
!!! ATACATTTTTATATATAACA+AGG - chr1_3:73884722-73884741 Msa0139930:intron 10.0%
!!! TACATTTTTATATATAACAA+GGG - chr1_3:73884723-73884742 Msa0139930:intron 10.0%
!!! ATCATTGTTATTTTTTTTAA+AGG + chr1_3:73885239-73885258 None:intergenic 10.0%
!! AAATGATTGTGTTAATAATT+GGG + chr1_3:73882820-73882839 None:intergenic 15.0%
!! TAAATGATTGTGTTAATAAT+TGG + chr1_3:73882821-73882840 None:intergenic 15.0%
!! ACAAAATAAAAATATGATTG+TGG + chr1_3:73883076-73883095 None:intergenic 15.0%
!! TGATAAATATTATTATGTCT+TGG - chr1_3:73883110-73883129 Msa0139930:intron 15.0%
!!! CAACCAATTTATAATATTTT+TGG - chr1_3:73883577-73883596 Msa0139930:intron 15.0%
!!! TATATTTTTCATGAATTCAA+AGG + chr1_3:73883931-73883950 None:intergenic 15.0%
!!! AAAAAAAAAGTGTTGTATTT+AGG - chr1_3:73884241-73884260 Msa0139930:intron 15.0%
!!! TATTTAGGTTAGAAAATAAT+TGG - chr1_3:73884256-73884275 Msa0139930:intron 15.0%
!! TTTCTATATAAAAATCTCCT+TGG + chr1_3:73882354-73882373 None:intergenic 20.0%
!! TATAGAAATTAGAGTTGAAA+CGG - chr1_3:73882366-73882385 Msa0139930:CDS 20.0%
!!! GACATAACTTTTTTTTTGAA+AGG + chr1_3:73882511-73882530 None:intergenic 20.0%
!!! AGTTTTTCACCTTTTTTTTA+AGG + chr1_3:73882716-73882735 None:intergenic 20.0%
!! TTGTATTGAAGTAATGTTAT+TGG + chr1_3:73882849-73882868 None:intergenic 20.0%
!! TCAATACAAATAAACCTAAT+TGG - chr1_3:73882860-73882879 Msa0139930:intron 20.0%
!! CAATACAAATAAACCTAATT+GGG - chr1_3:73882861-73882880 Msa0139930:intron 20.0%
!!! CTTTCACTAATTAAAGATTT+TGG + chr1_3:73882902-73882921 None:intergenic 20.0%
!! ATATTCAAAAAATGGTAAGT+TGG + chr1_3:73883615-73883634 None:intergenic 20.0%
!! AGTGTAAGAACAAATAATTT+GGG + chr1_3:73883670-73883689 None:intergenic 20.0%
!! TAGTGTAAGAACAAATAATT+TGG + chr1_3:73883671-73883690 None:intergenic 20.0%
!! GAAAAATATAACTTCAATTG+TGG - chr1_3:73883941-73883960 Msa0139930:intron 20.0%
!! TCAAAATAAAGATAAACAGT+GGG + chr1_3:73884081-73884100 None:intergenic 20.0%
!! ATCAAAATAAAGATAAACAG+TGG + chr1_3:73884082-73884101 None:intergenic 20.0%
!!! GTTTATCTTTATTTTGATGA+TGG - chr1_3:73884084-73884103 Msa0139930:intron 20.0%
!! TTGTGGTTATAATTATTAGA+TGG + chr1_3:73885163-73885182 None:intergenic 20.0%
!!! TGCTTTGATAATTTGCTTAT+TGG + chr1_3:73882029-73882048 None:intergenic 25.0%
! AAGACACTGAATTTGTAAAA+GGG + chr1_3:73882124-73882143 None:intergenic 25.0%
! AAAGACACTGAATTTGTAAA+AGG + chr1_3:73882125-73882144 None:intergenic 25.0%
! AATAACAAAGAAGTCATCAA+CGG - chr1_3:73882161-73882180 Msa0139930:three_prime_UTR 25.0%
!!! TTTTTTCTTTTGAACAACCA+AGG - chr1_3:73882334-73882353 Msa0139930:CDS 25.0%
! GGTTATATACAAAGTATAAG+AGG - chr1_3:73882394-73882413 Msa0139930:CDS 25.0%
! AAGTAACTTTCTTCTATGTT+TGG + chr1_3:73882457-73882476 None:intergenic 25.0%
! TTAAGAGACATTAATCCATA+AGG - chr1_3:73882478-73882497 Msa0139930:intron 25.0%
! AGTTCAAATTGCCAAATTAA+TGG - chr1_3:73882613-73882632 Msa0139930:intron 25.0%
! AAACTCCTTCCTTAAAAAAA+AGG - chr1_3:73882704-73882723 Msa0139930:intron 25.0%
!!! TTTCACCTTTTTTTTAAGGA+AGG + chr1_3:73882712-73882731 None:intergenic 25.0%
!!! ATTAGTGAAAGCTTTTTTCT+AGG - chr1_3:73882911-73882930 Msa0139930:intron 25.0%
!!! TTAGTGAAAGCTTTTTTCTA+GGG - chr1_3:73882912-73882931 Msa0139930:intron 25.0%
! AAATTCAAACTTACCAATAC+AGG + chr1_3:73883016-73883035 None:intergenic 25.0%
!!! TATTTTAAGAGTGCGTTTTA+GGG - chr1_3:73883201-73883220 Msa0139930:intron 25.0%
! AAAAATAAGCCAAACAAAAG+AGG + chr1_3:73883227-73883246 None:intergenic 25.0%
!! TTTTTGATAAGTCAATTCAC+TGG + chr1_3:73883723-73883742 None:intergenic 25.0%
! AAAACACAACTTATGATTTG+CGG - chr1_3:73883743-73883762 Msa0139930:intron 25.0%
! ATAGTTCATTCTTTGCAATT+TGG - chr1_3:73884031-73884050 Msa0139930:intron 25.0%
! ATGCATTTGAACAATGTTTA+TGG - chr1_3:73884134-73884153 Msa0139930:intron 25.0%
!! TTTTTATATATAACAAGGGC+CGG - chr1_3:73884727-73884746 Msa0139930:intron 25.0%
!!! CACGTTGTTTTATTAATTGT+AGG - chr1_3:73884916-73884935 Msa0139930:intron 25.0%
! TTATAGATATCTACTACTCA+AGG + chr1_3:73885196-73885215 None:intergenic 25.0%
TTACAAATTCAGTGTCTTTC+AGG - chr1_3:73882126-73882145 Msa0139930:three_prime_UTR 30.0%
TACAAATTCAGTGTCTTTCA+GGG - chr1_3:73882127-73882146 Msa0139930:three_prime_UTR 30.0%
AATTAGAGTTGAAACGGTTT+AGG - chr1_3:73882372-73882391 Msa0139930:CDS 30.0%
ATTAGAGTTGAAACGGTTTA+GGG - chr1_3:73882373-73882392 Msa0139930:CDS 30.0%
TATACAAAGTATAAGAGGCA+TGG - chr1_3:73882399-73882418 Msa0139930:CDS 30.0%
TAACTTTCTTCTATGTTTGG+AGG + chr1_3:73882454-73882473 None:intergenic 30.0%
!! CTTAGAAACGGTTTTTGATT+AGG + chr1_3:73882543-73882562 None:intergenic 30.0%
CTAGAAATGGCAATAAGTTT+CGG + chr1_3:73882592-73882611 None:intergenic 30.0%
GCAATTTGAACTACTAGAAA+TGG + chr1_3:73882605-73882624 None:intergenic 30.0%
GACAATATTTCTTGTAGTGA+AGG + chr1_3:73882642-73882661 None:intergenic 30.0%
! AGATTTTGGATCCTTCTAAT+TGG + chr1_3:73882888-73882907 None:intergenic 30.0%
!!! TCTTGGTTTGTTTTTTTCAG+TGG - chr1_3:73883127-73883146 Msa0139930:intron 30.0%
!! GTATTTTAAGAGTGCGTTTT+AGG - chr1_3:73883200-73883219 Msa0139930:intron 30.0%
CTATAGGACTTAAATTTGGT+TGG + chr1_3:73883696-73883715 None:intergenic 30.0%
! AAACACAACTTATGATTTGC+GGG - chr1_3:73883744-73883763 Msa0139930:intron 30.0%
ACCATTTCCCTCTTTATTAT+TGG - chr1_3:73884550-73884569 Msa0139930:intron 30.0%
TCCAATAATAAAGAGGGAAA+TGG + chr1_3:73884554-73884573 None:intergenic 30.0%
TAGCGATCCAATAATAAAGA+GGG + chr1_3:73884560-73884579 None:intergenic 30.0%
ATAGCGATCCAATAATAAAG+AGG + chr1_3:73884561-73884580 None:intergenic 30.0%
TTATTATTGGATCGCTATAC+AGG - chr1_3:73884563-73884582 Msa0139930:intron 30.0%
! TGGCTAGAATTCACATTTTA+AGG + chr1_3:73884782-73884801 None:intergenic 30.0%
!!! TTTTTTGTCAAGTAGTCTAG+TGG + chr1_3:73884802-73884821 None:intergenic 30.0%
! ATAAAATTTTGTCTCGATCG+AGG + chr1_3:73885042-73885061 None:intergenic 30.0%
TTTGCAGAAGTTTACAATCT+TGG - chr1_3:73885072-73885091 Msa0139930:intron 30.0%
! TCAATGAATTCCCTTGTTGT+TGG - chr1_3:73882074-73882093 Msa0139930:three_prime_UTR 35.0%
AATTACACCACCAACAACAA+GGG + chr1_3:73882087-73882106 None:intergenic 35.0%
!! TCTTGGTGGGTTAACTATTT+GGG + chr1_3:73882204-73882223 None:intergenic 35.0%
TTCAACTGCAGTCTTAGAAA+CGG + chr1_3:73882555-73882574 None:intergenic 35.0%
AGTGAAGGTTGCCATTAATT+TGG + chr1_3:73882627-73882646 None:intergenic 35.0%
!! TTGCTGTTACATGCAACTTT+TGG + chr1_3:73882676-73882695 None:intergenic 35.0%
!!! TTCTAGGGTTTTTGACTTTG+TGG - chr1_3:73882927-73882946 Msa0139930:intron 35.0%
TACAGGTATTCCCTCATATT+AGG + chr1_3:73882999-73883018 None:intergenic 35.0%
ATATGAGGGAATACCTGTAT+TGG - chr1_3:73883000-73883019 Msa0139930:intron 35.0%
TTGATAAGTCAATTCACTGG+CGG + chr1_3:73883720-73883739 None:intergenic 35.0%
! TCACTCATGTTTGTTGAACT+TGG + chr1_3:73883883-73883902 None:intergenic 35.0%
GGATAAACAATAGAACCAAG+TGG - chr1_3:73883962-73883981 Msa0139930:intron 35.0%
CTTTATTCTATTCGCTCACA+AGG + chr1_3:73884181-73884200 None:intergenic 35.0%
GTGATGTGATAGACAAAACA+AGG - chr1_3:73884406-73884425 Msa0139930:intron 35.0%
GAGGGAAATGGTAATTAGAA+TGG + chr1_3:73884542-73884561 None:intergenic 35.0%
!!! CACATTTTAAGGTGAGTAAG+TGG + chr1_3:73884771-73884790 None:intergenic 35.0%
AAAATCCAAGACCAACAAGA+GGG - chr1_3:73884959-73884978 Msa0139930:intron 35.0%
! TGTTGTTTAAGCAACCTTGT+AGG - chr1_3:73885001-73885020 Msa0139930:intron 35.0%
TTCAATTGTCAACGAGAAAG+TGG - chr1_3:73885117-73885136 Msa0139930:intron 35.0%
TATCTACTACTCAAGGTTTG+TGG + chr1_3:73885189-73885208 None:intergenic 35.0%
!! ATGAATTCCCTTGTTGTTGG+TGG - chr1_3:73882077-73882096 Msa0139930:three_prime_UTR 40.0%
CAATTACACCACCAACAACA+AGG + chr1_3:73882088-73882107 None:intergenic 40.0%
!! CTTGTTGTTGGTGGTGTAAT+TGG - chr1_3:73882086-73882105 Msa0139930:three_prime_UTR 40.0%
AACAAAGAAGTCATCAACGG+TGG - chr1_3:73882164-73882183 Msa0139930:three_prime_UTR 40.0%
!! CTCTTGGTGGGTTAACTATT+TGG + chr1_3:73882205-73882224 None:intergenic 40.0%
TTTCCACCAACTTGAACTCT+TGG + chr1_3:73882221-73882240 None:intergenic 40.0%
TATACCAACCAGAGTGTGTA+GGG + chr1_3:73882255-73882274 None:intergenic 40.0%
ATATACCAACCAGAGTGTGT+AGG + chr1_3:73882256-73882275 None:intergenic 40.0%
!!! CTCATTTTTCAAGTGCCACA+AGG - chr1_3:73882734-73882753 Msa0139930:intron 40.0%
!!! ATTTTTCAAGTGCCACAAGG+TGG - chr1_3:73882737-73882756 Msa0139930:intron 40.0%
GTGGGTAAAGGTTACATACA+AGG + chr1_3:73882772-73882791 None:intergenic 40.0%
! GGGATTTTTCGTTATCCATG+TGG + chr1_3:73882800-73882819 None:intergenic 40.0%
CCTTCTAATTGGTCCCAATT+AGG + chr1_3:73882877-73882896 None:intergenic 40.0%
CCTAATTGGGACCAATTAGA+AGG - chr1_3:73882874-73882893 Msa0139930:intron 40.0%
ATATTAGGATCAGTAGGGCT+TGG + chr1_3:73882984-73883003 None:intergenic 40.0%
CCCTCATATTAGGATCAGTA+GGG + chr1_3:73882989-73883008 None:intergenic 40.0%
CCCTACTGATCCTAATATGA+GGG - chr1_3:73882986-73883005 Msa0139930:intron 40.0%
TCCCTCATATTAGGATCAGT+AGG + chr1_3:73882990-73883009 None:intergenic 40.0%
!!! GTTTTAGGGCCTCTTTTGTT+TGG - chr1_3:73883215-73883234 Msa0139930:intron 40.0%
CGGGCTATAGGACTTAAATT+TGG + chr1_3:73883700-73883719 None:intergenic 40.0%
TGATAAGTCAATTCACTGGC+GGG + chr1_3:73883719-73883738 None:intergenic 40.0%
TATTGGATCGCTATACAGGA+TGG - chr1_3:73884567-73884586 Msa0139930:intron 40.0%
GTCTCTGAGTATAGATCAGT+TGG - chr1_3:73884691-73884710 Msa0139930:intron 40.0%
GAAAATCCAAGACCAACAAG+AGG - chr1_3:73884958-73884977 Msa0139930:intron 40.0%
GCTAATATAGTGTGCCTACA+AGG + chr1_3:73885018-73885037 None:intergenic 40.0%
TTGAAATAGAGAGCAGCAAC+AGG + chr1_3:73885102-73885121 None:intergenic 40.0%
!! GGTGGGTTAACTATTTGGGA+CGG + chr1_3:73882200-73882219 None:intergenic 45.0%
AACCCACCAAGAGTTCAAGT+TGG - chr1_3:73882212-73882231 Msa0139930:exon 45.0%
CACCAACTTGAACTCTTGGT+GGG + chr1_3:73882217-73882236 None:intergenic 45.0%
! TTGAAAGGCGCATGACCTTA+TGG + chr1_3:73882496-73882515 None:intergenic 45.0%
GTTATCCATGTGGCAGTTGT+GGG + chr1_3:73882790-73882809 None:intergenic 45.0%
TTGACTTTGTGGCACTTTGC+AGG - chr1_3:73882938-73882957 Msa0139930:intron 45.0%
GCCCTACTGATCCTAATATG+AGG - chr1_3:73882985-73883004 Msa0139930:intron 45.0%
ACTTGGTCACATCTTGTGCA+TGG + chr1_3:73883866-73883885 None:intergenic 45.0%
CACAGACACAAGAAACCACT+TGG + chr1_3:73883980-73883999 None:intergenic 45.0%
! ATTCGCTCACAAGGTGTCTA+CGG + chr1_3:73884172-73884191 None:intergenic 45.0%
ACCAATATTCCAGCGACTAC+AGG - chr1_3:73884592-73884611 Msa0139930:intron 45.0%
CCAATATTCCAGCGACTACA+GGG - chr1_3:73884593-73884612 Msa0139930:intron 45.0%
AAGGTGAGTAAGTGGAGTGT+CGG + chr1_3:73884763-73884782 None:intergenic 45.0%
! TGAATCCCTCTTGTTGGTCT+TGG + chr1_3:73884967-73884986 None:intergenic 45.0%
ACACGATGAATCCCTCTTGT+TGG + chr1_3:73884973-73884992 None:intergenic 45.0%
TGTCAACGAGAAAGTGGTTC+CGG - chr1_3:73885123-73885142 Msa0139930:CDS 45.0%
CTCAAGGTTTGTGGTTGTTG+TGG + chr1_3:73885180-73885199 None:intergenic 45.0%
!! TTTCTATATAATTAAAAAAA+TGG - chr1_3:73883495-73883514 Msa0139930:intron 5.0%
CCACCAACTTGAACTCTTGG+TGG + chr1_3:73882218-73882237 None:intergenic 50.0%
!! CCACCAAGAGTTCAAGTTGG+TGG - chr1_3:73882215-73882234 Msa0139930:exon 50.0%
AGAACCCTACACACTCTGGT+TGG - chr1_3:73882248-73882267 Msa0139930:CDS 50.0%
TTCAAGTGCCACAAGGTGGT+TGG - chr1_3:73882741-73882760 Msa0139930:intron 50.0%
! AGGCTTTTCCAACCACCTTG+TGG + chr1_3:73882752-73882771 None:intergenic 50.0%
CATGTGGCAGTTGTGGGTAA+AGG + chr1_3:73882784-73882803 None:intergenic 50.0%
CTTTACCCACAACTGCCACA+TGG - chr1_3:73882782-73882801 Msa0139930:intron 50.0%
CGTTATCCATGTGGCAGTTG+TGG + chr1_3:73882791-73882810 None:intergenic 50.0%
TTGTGGCACTTTGCAGGTGA+TGG - chr1_3:73882944-73882963 Msa0139930:intron 50.0%
!! TCAATTCACTGGCGGGCTAT+AGG + chr1_3:73883712-73883731 None:intergenic 50.0%
! TTCGCTCACAAGGTGTCTAC+GGG + chr1_3:73884171-73884190 None:intergenic 50.0%
CCCTGTAGTCGCTGGAATAT+TGG + chr1_3:73884596-73884615 None:intergenic 50.0%
AATGTTGTCCCTGTAGTCGC+TGG + chr1_3:73884604-73884623 None:intergenic 50.0%
GCGACTACAGGGACAACATT+CGG - chr1_3:73884604-73884623 Msa0139930:intron 50.0%
! AGGTGAGTAAGTGGAGTGTC+GGG + chr1_3:73884762-73884781 None:intergenic 50.0%
CCAGAGTGTGTAGGGTTCTC+AGG + chr1_3:73882247-73882266 None:intergenic 55.0%
CCTGAGAACCCTACACACTC+TGG - chr1_3:73882244-73882263 Msa0139930:CDS 55.0%
!! CAGTAGGGCTTGGTGCATCA+GGG + chr1_3:73882974-73882993 None:intergenic 55.0%
!! TCAGTAGGGCTTGGTGCATC+AGG + chr1_3:73882975-73882994 None:intergenic 55.0%
! CAAGGTGTCTACGGGATGGA+TGG + chr1_3:73884163-73884182 None:intergenic 55.0%
! CTCACAAGGTGTCTACGGGA+TGG + chr1_3:73884167-73884186 None:intergenic 55.0%
!! GGTGAGTAAGTGGAGTGTCG+GGG + chr1_3:73884761-73884780 None:intergenic 55.0%
CAACGAGAAAGTGGTTCCGG+TGG - chr1_3:73885126-73885145 Msa0139930:CDS 55.0%
GAGAAAGTGGTTCCGGTGGA+AGG - chr1_3:73885130-73885149 Msa0139930:CDS 55.0%
AAAGTGGTTCCGGTGGAAGG+AGG - chr1_3:73885133-73885152 Msa0139930:CDS 55.0%
!! GATGGTTAGCCTCCTTCCAC+CGG + chr1_3:73885145-73885164 None:intergenic 55.0%
!! GAGTGTCGGGGTTCGAACAC+CGG + chr1_3:73884749-73884768 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73882026 73885358 73882026 ID=Msa0139930;Name=Msa0139930
chr1_3 mRNA 73882026 73885358 73882026 ID=Msa0139930-mRNA-1;Parent=Msa0139930;Name=Msa0139930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=51|1|1|1|1|1|4|191|173
chr1_3 exon 73882026 73882446 73882026 ID=Msa0139930-mRNA-1:exon:25700;Parent=Msa0139930-mRNA-1
chr1_3 exon 73882759 73882799 73882759 ID=Msa0139930-mRNA-1:exon:25699;Parent=Msa0139930-mRNA-1
chr1_3 exon 73884363 73884424 73884363 ID=Msa0139930-mRNA-1:exon:25698;Parent=Msa0139930-mRNA-1
chr1_3 exon 73885119 73885358 73885119 ID=Msa0139930-mRNA-1:exon:25697;Parent=Msa0139930-mRNA-1
chr1_3 five_prime_UTR 73885308 73885358 73885308 ID=Msa0139930-mRNA-1:five_prime_utr;Parent=Msa0139930-mRNA-1
chr1_3 CDS 73885119 73885307 73885119 ID=Msa0139930-mRNA-1:cds;Parent=Msa0139930-mRNA-1
chr1_3 CDS 73884363 73884424 73884363 ID=Msa0139930-mRNA-1:cds;Parent=Msa0139930-mRNA-1
chr1_3 CDS 73882759 73882799 73882759 ID=Msa0139930-mRNA-1:cds;Parent=Msa0139930-mRNA-1
chr1_3 CDS 73882217 73882446 73882217 ID=Msa0139930-mRNA-1:cds;Parent=Msa0139930-mRNA-1
chr1_3 three_prime_UTR 73882026 73882216 73882026 ID=Msa0139930-mRNA-1:three_prime_utr;Parent=Msa0139930-mRNA-1
Gene Sequence

>Msa0139930

ATGAATTCCCTTGTTGTTGGTGGTGTAATTGGAGAAGTTTTAGACCCTTTTACAAATTCAGTGTCTTTCAGGGTTGTTTATGAAAATAACAAAGAAGTCATCAACGGTGGTGAGCTCAAACCGTCCCAAATAGTTAACCCACCAAGAGTTCAAGTTGGTGGAAATGACCTGAGAACCCTACACACTCTGGTGATGGTGAACCCTGATGCACCAAGCCCTACTGATCCTAATATGAGGGAATACCTGTATTGGATGGTTACCAATATTCCAGCGACTACAGGGACAACATTCGGACAAGAGATAGTGAGCTATGAAAATCCAAGACCAACAAGAGGGATTCATCGTGTGATATTTGTGTTGTTTAAGCAACCTTGTAGGCACACTATATTAGCTCCTCGATCGAGACAAAATTTTATTACAAGAGATTTTGCAGAAGTTTACAATCTTGGATTACCTGTTGCTGCTCTCTATTTCAATTGTCAACGAGAAAGTGGTTCCGGTGGAAGGAGGCTAACCATCTAA

Protein sequence

>Msa0139930

MNSLVVGGVIGEVLDPFTNSVSFRVVYENNKEVINGGELKPSQIVNPPRVQVGGNDLRTLHTLVMVNPDAPSPTDPNMREYLYWMVTNIPATTGTTFGQEIVSYENPRPTRGIHRVIFVLFKQPCRHTILAPRSRQNFITRDFAEVYNLGLPVAALYFNCQRESGSGGRRLTI*