AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0545750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545750 MtrunA17_Chr4g0026581 97.638 381 9 0 1 381 1 381 0.0 782
Msa0545750 MtrunA17_Chr4g0027491 74.737 380 93 2 3 379 8 387 0.0 617
Msa0545750 MtrunA17_Chr1g0208111 74.387 367 91 2 3 366 8 374 0.0 590
Msa0545750 MtrunA17_Chr1g0208571 70.185 379 92 3 3 378 8 368 0.0 557
Msa0545750 MtrunA17_Chr2g0300401 61.633 245 67 3 3 244 8 228 7.62e-103 303
Msa0545750 MtrunA17_Chr2g0327981 28.613 346 196 11 14 357 38 334 4.28e-30 118
Msa0545750 MtrunA17_Chr4g0023721 56.989 93 39 1 3 94 8 100 9.88e-30 110
Msa0545750 MtrunA17_Chr1g0195521 26.923 364 194 15 14 357 118 429 8.31e-24 102
Msa0545750 MtrunA17_Chr4g0067461 24.928 345 200 12 16 357 113 401 1.38e-21 95.5
Msa0545750 MtrunA17_Chr1g0182091 25.498 251 140 9 110 357 5 211 9.26e-14 70.1
Msa0545750 MtrunA17_Chr3g0145871 78.125 32 7 0 87 118 1 32 4.62e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0545750 AT1G08200.1 74.803 381 93 2 2 379 6 386 0.0 615
Msa0545750 AT2G27860.1 73.753 381 97 2 2 379 6 386 0.0 607
Msa0545750 AT3G46440.2 28.035 346 198 10 14 357 29 325 1.41e-28 114
Msa0545750 AT3G46440.1 28.035 346 198 10 14 357 29 325 1.41e-28 114
Msa0545750 AT5G59290.4 27.746 346 199 11 14 357 1 297 4.13e-28 112
Msa0545750 AT5G59290.1 27.746 346 199 11 14 357 30 326 8.83e-28 112
Msa0545750 AT5G59290.3 27.794 349 201 11 11 357 20 319 1.26e-27 111
Msa0545750 AT5G59290.2 28.324 346 197 12 14 357 45 341 1.29e-27 112
Msa0545750 AT2G28760.1 28.035 346 198 11 14 357 31 327 5.40e-27 110
Msa0545750 AT2G28760.2 28.035 346 198 11 14 357 31 327 5.40e-27 110
Msa0545750 AT2G28760.3 28.035 346 198 11 14 357 31 327 5.40e-27 110
Msa0545750 AT3G53520.1 28.775 351 188 16 14 357 120 415 5.48e-27 111
Msa0545750 AT2G28760.4 28.035 346 198 11 14 357 62 358 1.33e-26 109
Msa0545750 AT3G53520.2 29.060 351 185 17 14 357 120 413 1.26e-24 104
Msa0545750 AT2G47650.2 26.149 348 207 13 14 357 121 422 3.25e-24 103
Msa0545750 AT3G62830.2 26.648 349 198 14 14 357 119 414 7.83e-24 102
Msa0545750 AT3G62830.1 26.648 349 198 14 14 357 119 414 7.83e-24 102
Msa0545750 AT2G47650.1 26.074 349 200 14 14 357 121 416 3.28e-23 100
Msa0545750 AT3G53520.3 27.843 255 145 11 14 264 120 339 1.10e-15 78.2

Find 105 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTCCATTTGCTCTATC+AGG 0.212687 4_1:-36333298 None:intergenic
TTACATAGAGTTTATTTAAA+AGG 0.234063 4_1:-36334174 None:intergenic
TTAACAGATACTTCATTATC+TGG 0.251368 4_1:-36333337 None:intergenic
ATGACAGACAGGCTCATTTA+TGG 0.288959 4_1:+36332600 Msa0545750:CDS
ACCAACTCTGCAAGTTGAAT+TGG 0.296206 4_1:+36333949 Msa0545750:exon
CTATTGTGAGACCTTATAAC+TGG 0.307051 4_1:+36332896 Msa0545750:CDS
ACCTTTCCCTTATTTGTCTC+TGG 0.319335 4_1:+36334148 Msa0545750:three_prime_UTR
AAGGAAGCCAGAGACAAATA+AGG 0.326158 4_1:-36334155 None:intergenic
TGTGGAAGTTAGTTAATAAC+TGG 0.337606 4_1:-36331462 None:intergenic
GCTAGCTGAGCTGATGATAA+AGG 0.338715 4_1:+36333363 Msa0545750:CDS
TTTCTACGTGTGAGGTCTTT+GGG 0.341819 4_1:+36332177 Msa0545750:CDS
AACACACACAAAAGCTTTCA+TGG 0.346582 4_1:+36331544 Msa0545750:exon
TGATATAGAGAAAGGTTCTC+TGG 0.371467 4_1:-36333162 None:intergenic
CTTGGTCCAATCCAGTTATA+AGG 0.372591 4_1:-36332907 None:intergenic
CCAGGAATGAAGTCCATTCT+TGG 0.373462 4_1:-36332925 None:intergenic
AGTTCGTCAAGAGATGTCTT+TGG 0.383851 4_1:-36333848 None:intergenic
TATGGCTTTGTGAGATGTTT+CGG 0.384939 4_1:-36331666 None:intergenic
GAGAAAATGCAGAGAGGAAG+AGG 0.403709 4_1:-36331501 None:intergenic
GCGTGATTGGTTTCCCGTCC+AGG 0.404306 4_1:-36331577 None:intergenic
CATATTGAGATCGGCGTGAT+TGG 0.409720 4_1:-36331590 None:intergenic
CCAAGAATGGACTTCATTCC+TGG 0.411557 4_1:+36332925 Msa0545750:CDS
GACCATCTCTGTTTGTGAAC+TGG 0.420386 4_1:-36332558 None:intergenic
TCCTTGATAAGTCTCATCCT+TGG 0.421329 4_1:+36331723 Msa0545750:CDS
GGATTATAACACGCGGCCTT+TGG 0.424145 4_1:+36331964 Msa0545750:CDS
TTCAAGATGGTGATTGAAGA+AGG 0.434085 4_1:-36331430 None:intergenic
AGAGGAGACATCAATGACTA+TGG 0.439801 4_1:-36331684 None:intergenic
TCCAATTCAACTTGCAGAGT+TGG 0.443339 4_1:-36333950 None:intergenic
TGCAGAGTTGGTCAAGTTGA+AGG 0.445195 4_1:-36333938 None:intergenic
AAGCTTTGACAAGAGTTTCA+AGG 0.448052 4_1:-36331793 None:intergenic
CTGGTGATGATTGTCATGTC+AGG 0.448491 4_1:-36333579 None:intergenic
ACTGAAACAAGCTAAAACTC+TGG 0.453604 4_1:-36332974 None:intergenic
TGCATCTTTGATATAGAGAA+AGG 0.455525 4_1:-36333170 None:intergenic
CCTTGATAAGTCTCATCCTT+GGG 0.467401 4_1:+36331724 Msa0545750:CDS
AAGGCTATGATGACAGTGAT+AGG 0.467697 4_1:+36333550 Msa0545750:CDS
GACATCTCTTGACGAACTGT+TGG 0.469860 4_1:+36333853 Msa0545750:CDS
GTGAGACCTTATAACTGGAT+TGG 0.470330 4_1:+36332901 Msa0545750:CDS
GAGGTCTTTGGGAAGACAAT+TGG 0.475078 4_1:+36332188 Msa0545750:CDS
TAACTGGATTGGACCAAGAA+TGG 0.477010 4_1:+36332912 Msa0545750:CDS
GATAACCCTGATAGAGCAAA+TGG 0.482209 4_1:+36333292 Msa0545750:CDS
TAACAGATACTTCATTATCT+GGG 0.496503 4_1:-36333336 None:intergenic
TGTACCTTTCTATACTCCTC+AGG 0.497124 4_1:-36332221 None:intergenic
ATGTCTGATGTTGATATTGA+AGG 0.498197 4_1:-36333883 None:intergenic
GGAAAGAGAAAAGGCGTGTG+TGG 0.500447 4_1:-36331480 None:intergenic
ATAGCTGAGCATGCGGAGAA+TGG 0.502681 4_1:+36332862 Msa0545750:intron
CTGAAACAAGCTAAAACTCT+GGG 0.509904 4_1:-36332973 None:intergenic
AAGGTATATGCAAAGGTGGC+TGG 0.511233 4_1:+36333471 Msa0545750:intron
AGGAAGCCAGAGACAAATAA+GGG 0.511325 4_1:-36334154 None:intergenic
GACTTCATTCCTGGTGTGGA+TGG 0.515549 4_1:+36332934 Msa0545750:CDS
AGAGGAAGAGGAAAGAGAAA+AGG 0.515563 4_1:-36331489 None:intergenic
TAATTTCATCGATGCGATCC+CGG 0.523625 4_1:+36332000 Msa0545750:CDS
ATATGCATGATCGGCGGTGG+AGG 0.526513 4_1:+36331608 Msa0545750:CDS
TCAATATGCATGATCGGCGG+TGG 0.527392 4_1:+36331605 Msa0545750:CDS
TGGATCGAGTGAACCTGGAC+GGG 0.529219 4_1:+36331564 Msa0545750:CDS
TTTCATGGATCGAGTGAACC+TGG 0.529328 4_1:+36331559 Msa0545750:exon
ATTTGTCAGATTGTCGCTCA+TGG 0.529738 4_1:-36334020 None:intergenic
TCCCTCTAGTCTATCAACTC+TGG 0.531156 4_1:+36333500 Msa0545750:CDS
GTTTGAGCGGCTCGCCACGC+AGG 0.531281 4_1:-36333120 None:intergenic
GGACAGCATACCAAGCTGCC+TGG 0.535237 4_1:-36333598 None:intergenic
CCCAAGGATGAGACTTATCA+AGG 0.539968 4_1:-36331724 None:intergenic
ACAATCATCACCAGGCAGCT+TGG 0.544555 4_1:+36333588 Msa0545750:CDS
GAGCCGCTCAAACTTGTTGA+TGG 0.544603 4_1:+36333130 Msa0545750:CDS
TGTGTCCATTTGCTCTATCA+GGG 0.545363 4_1:-36333297 None:intergenic
ACTCTGGGGACACCATCACT+TGG 0.547457 4_1:-36332958 None:intergenic
AAATGGACACATCTTTAATG+TGG 0.547790 4_1:+36333309 Msa0545750:CDS
GTGCAAAGCAAATGACAGAC+AGG 0.549748 4_1:+36332589 Msa0545750:CDS
GATATAGAGAAAGGTTCTCT+GGG 0.550685 4_1:-36333161 None:intergenic
CATTAAGGTATATGCAAAGG+TGG 0.552476 4_1:+36333467 Msa0545750:intron
TTTCATTAAGGTATATGCAA+AGG 0.553205 4_1:+36333464 Msa0545750:intron
TCATTTGATGAAACTCGATA+CGG 0.560664 4_1:-36331751 None:intergenic
TCTTGCTGCGATTTGTACAC+CGG 0.572521 4_1:+36331940 Msa0545750:CDS
TCCAGAGTTGATAGACTAGA+GGG 0.573185 4_1:-36333501 None:intergenic
GGTGTGGATGGTCCAAGTGA+TGG 0.573258 4_1:+36332946 Msa0545750:CDS
CCGATCTCAATATGCATGAT+CGG 0.574639 4_1:+36331599 Msa0545750:CDS
AATTGGTAGCTTTCTGCCTG+AGG 0.575752 4_1:+36332205 Msa0545750:CDS
CCGATCATGCATATTGAGAT+CGG 0.578859 4_1:-36331599 None:intergenic
TCTGCCTGAGGAGTATAGAA+AGG 0.581092 4_1:+36332217 Msa0545750:CDS
ATGGATCGAGTGAACCTGGA+CGG 0.589210 4_1:+36331563 Msa0545750:CDS
CTATATCAAAGATGCAGTTG+AGG 0.589890 4_1:+36333177 Msa0545750:CDS
AATGGACACATCTTTAATGT+GGG 0.590992 4_1:+36333310 Msa0545750:CDS
ATCGGCGGTGGAGGATTCAT+CGG 0.591414 4_1:+36331617 Msa0545750:CDS
GTCTCACAATAGTGAACTTG+AGG 0.593001 4_1:-36332885 None:intergenic
CCGCTCAAACTTGTTGATGG+TGG 0.594336 4_1:+36333133 Msa0545750:CDS
TCACTTGGACCATCCACACC+AGG 0.596283 4_1:-36332943 None:intergenic
GTCCAGTTCACAAACAGAGA+TGG 0.596455 4_1:+36332556 Msa0545750:CDS
GCCAGAGACAAATAAGGGAA+AGG 0.602255 4_1:-36334149 None:intergenic
ATCCAGAGTTGATAGACTAG+AGG 0.603381 4_1:-36333502 None:intergenic
TCTTTGAGCTTGTAATATCG+AGG 0.603944 4_1:-36332510 None:intergenic
CTGACATGACAATCATCACC+AGG 0.624329 4_1:+36333580 Msa0545750:CDS
TGTCTGATGTTGATATTGAA+GGG 0.635641 4_1:-36333882 None:intergenic
GGCCGCGTGTTATAATCCGC+CGG 0.636617 4_1:-36331959 None:intergenic
AACTCGATACGGTTAGCCCA+AGG 0.640625 4_1:-36331740 None:intergenic
TAAATCTATAGCTGAGCATG+CGG 0.640819 4_1:+36332855 Msa0545750:intron
TGGTGATGATTGTCATGTCA+GGG 0.642852 4_1:-36333578 None:intergenic
TTACTGTAAATAGTATCCAA+AGG 0.643272 4_1:-36331980 None:intergenic
AATGGACTTCATTCCTGGTG+TGG 0.645922 4_1:+36332930 Msa0545750:CDS
AGAAGAGAGAAAATGCAGAG+AGG 0.648423 4_1:-36331507 None:intergenic
TGCTGCGATTTGTACACCGG+CGG 0.656615 4_1:+36331943 Msa0545750:CDS
TATATGATACACTAATTGTG+AGG 0.660077 4_1:+36334044 Msa0545750:three_prime_UTR
CCACCATCAACAAGTTTGAG+CGG 0.662331 4_1:-36333133 None:intergenic
TTTCATCGATGCGATCCCGG+TGG 0.689547 4_1:+36332003 Msa0545750:CDS
ATCTCAATATGCATGATCGG+CGG 0.695000 4_1:+36331602 Msa0545750:CDS
AGAGTTGATAGACTAGAGGG+AGG 0.706272 4_1:-36333498 None:intergenic
TTGCTCTAGAATCTCCTGCG+TGG 0.708460 4_1:+36333106 Msa0545750:intron
CACCGGCGGATTATAACACG+CGG 0.709009 4_1:+36331957 Msa0545750:CDS
TGAAACAAGCTAAAACTCTG+GGG 0.732978 4_1:-36332972 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAAAGTAAATAAAAA+CGG - chr4_1:36331864-36331883 None:intergenic 10.0%
!! TCATCAAAAATAAATAAAAA+TGG - chr4_1:36331895-36331914 None:intergenic 10.0%
!!! AAAAAATTTAAAACATAACA+TGG + chr4_1:36332279-36332298 Msa0545750:intron 10.0%
!!! ATGAATGTAATCATATTTTT+CGG + chr4_1:36332353-36332372 Msa0545750:intron 15.0%
!! CTAAAAATTAAACATATCTT+TGG - chr4_1:36332413-36332432 None:intergenic 15.0%
!!! ATTTTTGATGATGTTGTTTT+TGG + chr4_1:36331904-36331923 Msa0545750:intron 20.0%
!!! TTTCATGTTTTTATGAAATC+TGG + chr4_1:36332092-36332111 Msa0545750:intron 20.0%
!!! TTCTAAATTAGTCTTTAGAT+AGG + chr4_1:36333390-36333409 Msa0545750:intron 20.0%
!!! TTATTTCTCTTGAAAAACAA+AGG - chr4_1:36333422-36333441 None:intergenic 20.0%
!!! CTCATTTTGTTTTTTCATTA+AGG + chr4_1:36333452-36333471 Msa0545750:intron 20.0%
! TTACTGTAAATAGTATCCAA+AGG - chr4_1:36331983-36332002 None:intergenic 25.0%
!! TTTTTATGAAATCTGGTTGA+TGG + chr4_1:36332099-36332118 Msa0545750:intron 25.0%
! AAAAAAAAAGAAACAGAAGC+AGG - chr4_1:36333016-36333035 None:intergenic 25.0%
! TATGCTATCATTTAACATGT+AGG + chr4_1:36333270-36333289 Msa0545750:intron 25.0%
! TAACAGATACTTCATTATCT+GGG - chr4_1:36333339-36333358 None:intergenic 25.0%
! TTAACAGATACTTCATTATC+TGG - chr4_1:36333340-36333359 None:intergenic 25.0%
! TCAAGAGAAATAAACAACTT+TGG + chr4_1:36333429-36333448 Msa0545750:intron 25.0%
! TTTCATTAAGGTATATGCAA+AGG + chr4_1:36333464-36333483 Msa0545750:intron 25.0%
! GCATAGATACAAAAGAAATA+AGG - chr4_1:36333622-36333641 None:intergenic 25.0%
! TCAAATCTTCAACAAAATCA+TGG - chr4_1:36333687-36333706 None:intergenic 25.0%
! TATATGATACACTAATTGTG+AGG + chr4_1:36334044-36334063 Msa0545750:three_prime_UTR 25.0%
!!! CTGGTTTCTTTTTTTCAAGA+TGG - chr4_1:36331446-36331465 None:intergenic 30.0%
TGTGGAAGTTAGTTAATAAC+TGG - chr4_1:36331465-36331484 None:intergenic 30.0%
TCATTTGATGAAACTCGATA+CGG - chr4_1:36331754-36331773 None:intergenic 30.0%
AAAATAAAAAACCTACCACC+GGG - chr4_1:36332021-36332040 None:intergenic 30.0%
CAAAATAAAAAACCTACCAC+CGG - chr4_1:36332022-36332041 None:intergenic 30.0%
TACAGCAAGAATCTCTTTAT+GGG + chr4_1:36332240-36332259 Msa0545750:intron 30.0%
TGCATCTTTGATATAGAGAA+AGG - chr4_1:36333173-36333192 None:intergenic 30.0%
AAATGGACACATCTTTAATG+TGG + chr4_1:36333309-36333328 Msa0545750:CDS 30.0%
AATGGACACATCTTTAATGT+GGG + chr4_1:36333310-36333329 Msa0545750:CDS 30.0%
! TCAGAAGTTTTCTATGGTAA+AGG + chr4_1:36333531-36333550 Msa0545750:CDS 30.0%
GTTTAGACTAACAATGAGTT+TGG - chr4_1:36333753-36333772 None:intergenic 30.0%
CTGTTTATTCTTGTGAGTTT+AGG + chr4_1:36333818-36333837 Msa0545750:intron 30.0%
TTATTCTTGTGAGTTTAGGT+TGG + chr4_1:36333822-36333841 Msa0545750:intron 30.0%
TGTCTGATGTTGATATTGAA+GGG - chr4_1:36333885-36333904 None:intergenic 30.0%
ATGTCTGATGTTGATATTGA+AGG - chr4_1:36333886-36333905 None:intergenic 30.0%
TTCAAGATGGTGATTGAAGA+AGG - chr4_1:36331433-36331452 None:intergenic 35.0%
AACACACACAAAAGCTTTCA+TGG + chr4_1:36331544-36331563 Msa0545750:exon 35.0%
!!! TGTTTCGGACATTAGCTTTT+CGG - chr4_1:36331654-36331673 None:intergenic 35.0%
!! TATGGCTTTGTGAGATGTTT+CGG - chr4_1:36331669-36331688 None:intergenic 35.0%
!! GAGATGATTGATTTTCTCAG+AGG - chr4_1:36331705-36331724 None:intergenic 35.0%
! AAGCTTTGACAAGAGTTTCA+AGG - chr4_1:36331796-36331815 None:intergenic 35.0%
GTACAGCAAGAATCTCTTTA+TGG + chr4_1:36332239-36332258 Msa0545750:intron 35.0%
!!! ATTTTTCGGTGTCATGATGT+TGG + chr4_1:36332367-36332386 Msa0545750:intron 35.0%
AACACAAATTTGCATCATGC+AGG + chr4_1:36332485-36332504 Msa0545750:intron 35.0%
TCTTTGAGCTTGTAATATCG+AGG - chr4_1:36332513-36332532 None:intergenic 35.0%
! GATGTGAGTCCTTGTATTTT+TGG + chr4_1:36332534-36332553 Msa0545750:CDS 35.0%
TGAACTGGACCAAAAATACA+AGG - chr4_1:36332546-36332565 None:intergenic 35.0%
GGCTCATTTATGGTAAACAA+AGG + chr4_1:36332610-36332629 Msa0545750:intron 35.0%
CGTCAAATTGAAACCATGTA+AGG - chr4_1:36332767-36332786 None:intergenic 35.0%
TAAATCTATAGCTGAGCATG+CGG + chr4_1:36332855-36332874 Msa0545750:intron 35.0%
CTATTGTGAGACCTTATAAC+TGG + chr4_1:36332896-36332915 Msa0545750:CDS 35.0%
TGAAACAAGCTAAAACTCTG+GGG - chr4_1:36332975-36332994 None:intergenic 35.0%
CTGAAACAAGCTAAAACTCT+GGG - chr4_1:36332976-36332995 None:intergenic 35.0%
ACTGAAACAAGCTAAAACTC+TGG - chr4_1:36332977-36332996 None:intergenic 35.0%
! GAAGCTTTGTGAAAAAACAG+TGG - chr4_1:36333086-36333105 None:intergenic 35.0%
GATATAGAGAAAGGTTCTCT+GGG - chr4_1:36333164-36333183 None:intergenic 35.0%
TGATATAGAGAAAGGTTCTC+TGG - chr4_1:36333165-36333184 None:intergenic 35.0%
CTATATCAAAGATGCAGTTG+AGG + chr4_1:36333177-36333196 Msa0545750:CDS 35.0%
CATTAAGGTATATGCAAAGG+TGG + chr4_1:36333467-36333486 Msa0545750:intron 35.0%
! GTGAGTTCAGAAGTTTTCTA+TGG + chr4_1:36333525-36333544 Msa0545750:CDS 35.0%
AGAGGAAGAGGAAAGAGAAA+AGG - chr4_1:36331492-36331511 None:intergenic 40.0%
AGAAGAGAGAAAATGCAGAG+AGG - chr4_1:36331510-36331529 None:intergenic 40.0%
! GAAAGCTTTTGTGTGTGTTG+TGG - chr4_1:36331543-36331562 None:intergenic 40.0%
CCGATCATGCATATTGAGAT+CGG - chr4_1:36331602-36331621 None:intergenic 40.0%
CCGATCTCAATATGCATGAT+CGG + chr4_1:36331599-36331618 Msa0545750:CDS 40.0%
ATCTCAATATGCATGATCGG+CGG + chr4_1:36331602-36331621 Msa0545750:CDS 40.0%
AGAGGAGACATCAATGACTA+TGG - chr4_1:36331687-36331706 None:intergenic 40.0%
TCCTTGATAAGTCTCATCCT+TGG + chr4_1:36331723-36331742 Msa0545750:CDS 40.0%
CCTTGATAAGTCTCATCCTT+GGG + chr4_1:36331724-36331743 Msa0545750:CDS 40.0%
TAATTTCATCGATGCGATCC+CGG + chr4_1:36332000-36332019 Msa0545750:CDS 40.0%
!! GATTCACTTTTCTACGTGTG+AGG + chr4_1:36332169-36332188 Msa0545750:CDS 40.0%
! TTTTCTACGTGTGAGGTCTT+TGG + chr4_1:36332176-36332195 Msa0545750:CDS 40.0%
TTTCTACGTGTGAGGTCTTT+GGG + chr4_1:36332177-36332196 Msa0545750:CDS 40.0%
TGTACCTTTCTATACTCCTC+AGG - chr4_1:36332224-36332243 None:intergenic 40.0%
TGTTGGACACTTACATGTGT+CGG + chr4_1:36332384-36332403 Msa0545750:intron 40.0%
ATGACAGACAGGCTCATTTA+TGG + chr4_1:36332600-36332619 Msa0545750:CDS 40.0%
TCAATGACAGTATGTGTGTC+TGG - chr4_1:36332684-36332703 None:intergenic 40.0%
GTCTCACAATAGTGAACTTG+AGG - chr4_1:36332888-36332907 None:intergenic 40.0%
GTGAGACCTTATAACTGGAT+TGG + chr4_1:36332901-36332920 Msa0545750:CDS 40.0%
CTTGGTCCAATCCAGTTATA+AGG - chr4_1:36332910-36332929 None:intergenic 40.0%
! TAACTGGATTGGACCAAGAA+TGG + chr4_1:36332912-36332931 Msa0545750:CDS 40.0%
GATAACCCTGATAGAGCAAA+TGG + chr4_1:36333292-36333311 Msa0545750:CDS 40.0%
TGTGTCCATTTGCTCTATCA+GGG - chr4_1:36333300-36333319 None:intergenic 40.0%
ATGTGTCCATTTGCTCTATC+AGG - chr4_1:36333301-36333320 None:intergenic 40.0%
!! TCCAGAGTTGATAGACTAGA+GGG - chr4_1:36333504-36333523 None:intergenic 40.0%
!! ATCCAGAGTTGATAGACTAG+AGG - chr4_1:36333505-36333524 None:intergenic 40.0%
AAGGCTATGATGACAGTGAT+AGG + chr4_1:36333550-36333569 Msa0545750:CDS 40.0%
! TGGTGATGATTGTCATGTCA+GGG - chr4_1:36333581-36333600 None:intergenic 40.0%
AGAATCACAATGCGCAACTA+TGG - chr4_1:36333729-36333748 None:intergenic 40.0%
AGTTCGTCAAGAGATGTCTT+TGG - chr4_1:36333851-36333870 None:intergenic 40.0%
! ACCAACTCTGCAAGTTGAAT+TGG + chr4_1:36333949-36333968 Msa0545750:exon 40.0%
TCCAATTCAACTTGCAGAGT+TGG - chr4_1:36333953-36333972 None:intergenic 40.0%
ATTTGTCAGATTGTCGCTCA+TGG - chr4_1:36334023-36334042 None:intergenic 40.0%
! ACCTTTCCCTTATTTGTCTC+TGG + chr4_1:36334148-36334167 Msa0545750:three_prime_UTR 40.0%
AGGAAGCCAGAGACAAATAA+GGG - chr4_1:36334157-36334176 None:intergenic 40.0%
AAGGAAGCCAGAGACAAATA+AGG - chr4_1:36334158-36334177 None:intergenic 40.0%
GAGAAAATGCAGAGAGGAAG+AGG - chr4_1:36331504-36331523 None:intergenic 45.0%
TTTCATGGATCGAGTGAACC+TGG + chr4_1:36331559-36331578 Msa0545750:exon 45.0%
CATATTGAGATCGGCGTGAT+TGG - chr4_1:36331593-36331612 None:intergenic 45.0%
CCCAAGGATGAGACTTATCA+AGG - chr4_1:36331727-36331746 None:intergenic 45.0%
TCTTGCTGCGATTTGTACAC+CGG + chr4_1:36331940-36331959 Msa0545750:CDS 45.0%
! GAGGTCTTTGGGAAGACAAT+TGG + chr4_1:36332188-36332207 Msa0545750:CDS 45.0%
! AATTGGTAGCTTTCTGCCTG+AGG + chr4_1:36332205-36332224 Msa0545750:CDS 45.0%
! TCTGCCTGAGGAGTATAGAA+AGG + chr4_1:36332217-36332236 Msa0545750:CDS 45.0%
GTCCAGTTCACAAACAGAGA+TGG + chr4_1:36332556-36332575 Msa0545750:CDS 45.0%
GACCATCTCTGTTTGTGAAC+TGG - chr4_1:36332561-36332580 None:intergenic 45.0%
GTGCAAAGCAAATGACAGAC+AGG + chr4_1:36332589-36332608 Msa0545750:CDS 45.0%
TCAGTGTCAGACACCTTACA+TGG + chr4_1:36332751-36332770 Msa0545750:intron 45.0%
CCAGGAATGAAGTCCATTCT+TGG - chr4_1:36332928-36332947 None:intergenic 45.0%
! CCAAGAATGGACTTCATTCC+TGG + chr4_1:36332925-36332944 Msa0545750:CDS 45.0%
! AATGGACTTCATTCCTGGTG+TGG + chr4_1:36332930-36332949 Msa0545750:CDS 45.0%
CCACCATCAACAAGTTTGAG+CGG - chr4_1:36333136-36333155 None:intergenic 45.0%
GCTAGCTGAGCTGATGATAA+AGG + chr4_1:36333363-36333382 Msa0545750:CDS 45.0%
AAGGTATATGCAAAGGTGGC+TGG + chr4_1:36333471-36333490 Msa0545750:intron 45.0%
!! AGAGTTGATAGACTAGAGGG+AGG - chr4_1:36333501-36333520 None:intergenic 45.0%
TCCCTCTAGTCTATCAACTC+TGG + chr4_1:36333500-36333519 Msa0545750:CDS 45.0%
! CTGGTGATGATTGTCATGTC+AGG - chr4_1:36333582-36333601 None:intergenic 45.0%
CTGACATGACAATCATCACC+AGG + chr4_1:36333580-36333599 Msa0545750:CDS 45.0%
GACATCTCTTGACGAACTGT+TGG + chr4_1:36333853-36333872 Msa0545750:CDS 45.0%
!! TGCAGAGTTGGTCAAGTTGA+AGG - chr4_1:36333941-36333960 None:intergenic 45.0%
GCCAGAGACAAATAAGGGAA+AGG - chr4_1:36334152-36334171 None:intergenic 45.0%
! GGAAAGAGAAAAGGCGTGTG+TGG - chr4_1:36331483-36331502 None:intergenic 50.0%
ATGGATCGAGTGAACCTGGA+CGG + chr4_1:36331563-36331582 Msa0545750:CDS 50.0%
TCAATATGCATGATCGGCGG+TGG + chr4_1:36331605-36331624 Msa0545750:CDS 50.0%
!!! CGGACATTAGCTTTTCGGTG+AGG - chr4_1:36331649-36331668 None:intergenic 50.0%
! AACTCGATACGGTTAGCCCA+AGG - chr4_1:36331743-36331762 None:intergenic 50.0%
GGATTATAACACGCGGCCTT+TGG + chr4_1:36331964-36331983 Msa0545750:CDS 50.0%
ATAGCTGAGCATGCGGAGAA+TGG + chr4_1:36332862-36332881 Msa0545750:intron 50.0%
GACTTCATTCCTGGTGTGGA+TGG + chr4_1:36332934-36332953 Msa0545750:CDS 50.0%
!! TTGCTCTAGAATCTCCTGCG+TGG + chr4_1:36333106-36333125 Msa0545750:intron 50.0%
!! GAGCCGCTCAAACTTGTTGA+TGG + chr4_1:36333130-36333149 Msa0545750:CDS 50.0%
!! CCGCTCAAACTTGTTGATGG+TGG + chr4_1:36333133-36333152 Msa0545750:CDS 50.0%
ACAATCATCACCAGGCAGCT+TGG + chr4_1:36333588-36333607 Msa0545750:CDS 50.0%
TGGATCGAGTGAACCTGGAC+GGG + chr4_1:36331564-36331583 Msa0545750:CDS 55.0%
ATATGCATGATCGGCGGTGG+AGG + chr4_1:36331608-36331627 Msa0545750:CDS 55.0%
ATCGGCGGTGGAGGATTCAT+CGG + chr4_1:36331617-36331636 Msa0545750:CDS 55.0%
TGCTGCGATTTGTACACCGG+CGG + chr4_1:36331943-36331962 Msa0545750:CDS 55.0%
!! CACCGGCGGATTATAACACG+CGG + chr4_1:36331957-36331976 Msa0545750:CDS 55.0%
TTTCATCGATGCGATCCCGG+TGG + chr4_1:36332003-36332022 Msa0545750:CDS 55.0%
TCACTTGGACCATCCACACC+AGG - chr4_1:36332946-36332965 None:intergenic 55.0%
GGTGTGGATGGTCCAAGTGA+TGG + chr4_1:36332946-36332965 Msa0545750:CDS 55.0%
! ACTCTGGGGACACCATCACT+TGG - chr4_1:36332961-36332980 None:intergenic 55.0%
!! GCGTGATTGGTTTCCCGTCC+AGG - chr4_1:36331580-36331599 None:intergenic 60.0%
GGCCGCGTGTTATAATCCGC+CGG - chr4_1:36331962-36331981 None:intergenic 60.0%
ATCGATGCGATCCCGGTGGT+AGG + chr4_1:36332007-36332026 Msa0545750:intron 60.0%
GGACAGCATACCAAGCTGCC+TGG - chr4_1:36333601-36333620 None:intergenic 60.0%
GTTTGAGCGGCTCGCCACGC+AGG - chr4_1:36333123-36333142 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 36331430 36334194 36331430 ID=Msa0545750;Name=Msa0545750
chr4_1 mRNA 36331430 36334194 36331430 ID=Msa0545750-mRNA-1;Parent=Msa0545750;Name=Msa0545750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=133|1|1|1|1|1|9|245|381
chr4_1 exon 36331430 36331823 36331430 ID=Msa0545750-mRNA-1:exon:9234;Parent=Msa0545750-mRNA-1
chr4_1 exon 36331932 36332024 36331932 ID=Msa0545750-mRNA-1:exon:9235;Parent=Msa0545750-mRNA-1
chr4_1 exon 36332137 36332238 36332137 ID=Msa0545750-mRNA-1:exon:9236;Parent=Msa0545750-mRNA-1
chr4_1 exon 36332507 36332621 36332507 ID=Msa0545750-mRNA-1:exon:9237;Parent=Msa0545750-mRNA-1
chr4_1 exon 36332866 36332999 36332866 ID=Msa0545750-mRNA-1:exon:9238;Parent=Msa0545750-mRNA-1
chr4_1 exon 36333115 36333216 36333115 ID=Msa0545750-mRNA-1:exon:9239;Parent=Msa0545750-mRNA-1
chr4_1 exon 36333292 36333384 36333292 ID=Msa0545750-mRNA-1:exon:9240;Parent=Msa0545750-mRNA-1
chr4_1 exon 36333474 36333609 36333474 ID=Msa0545750-mRNA-1:exon:9241;Parent=Msa0545750-mRNA-1
chr4_1 exon 36333840 36334194 36333840 ID=Msa0545750-mRNA-1:exon:9242;Parent=Msa0545750-mRNA-1
chr4_1 five_prime_UTR 36331430 36331562 36331430 ID=Msa0545750-mRNA-1:five_prime_utr;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36331563 36331823 36331563 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36331932 36332024 36331932 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36332137 36332238 36332137 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36332507 36332621 36332507 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36332866 36332999 36332866 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36333115 36333216 36333115 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36333292 36333384 36333292 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36333474 36333609 36333474 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 CDS 36333840 36333949 36333840 ID=Msa0545750-mRNA-1:cds;Parent=Msa0545750-mRNA-1
chr4_1 three_prime_UTR 36333950 36334194 36333950 ID=Msa0545750-mRNA-1:three_prime_utr;Parent=Msa0545750-mRNA-1
Gene Sequence

>Msa0545750

ATGGATCGAGTGAACCTGGACGGGAAACCAATCACGCCGATCTCAATATGCATGATCGGCGGTGGAGGATTCATCGGATCACACCTCACCGAAAAGCTAATGTCCGAAACATCTCACAAAGCCATAGTCATTGATGTCTCCTCTGAGAAAATCAATCATCTCCTTGATAAGTCTCATCCTTGGGCTAACCGTATCGAGTTTCATCAAATGAATATCAAGAACGATTCTCGCCTTGAAACTCTTGTCAAAGCTTCTGATCTCACTATTAATCTTGCTGCGATTTGTACACCGGCGGATTATAACACGCGGCCTTTGGATACTATTTACAGTAATTTCATCGATGCGATCCCGGTGATTAAATTTTGTACTGAGAACAATAAGCGTTTGATTCACTTTTCTACGTGTGAGGTCTTTGGGAAGACAATTGGTAGCTTTCTGCCTGAGGAGTATAGAAAGGAACCTCGATATTACAAGCTCAAAGAAGATGTGAGTCCTTGTATTTTTGGTCCAGTTCACAAACAGAGATGGTCTTATGCATGTGCAAAGCAAATGACAGACAGGCTCATTTATGCTGAGCATGCGGAGAATGGCCTCAAGTTCACTATTGTGAGACCTTATAACTGGATTGGACCAAGAATGGACTTCATTCCTGGTGTGGATGGTCCAAGTGATGGTGTCCCCAGAGTTTTAGCTTGTTTCAGTAATAATCTCCTGCGTGGCGAGCCGCTCAAACTTGTTGATGGTGGACATTCCCAGAGAACCTTTCTCTATATCAAAGATGCAGTTGAGGCTGTTTTGTTAATGATTGATAACCCTGATAGAGCAAATGGACACATCTTTAATGTGGGAAACCCAGATAATGAAGTATCTGTTAAGCAGCTAGCTGAGCTGATGATAAAGGTATATGCAAAGGTGGCTGGTGTACCTCCCTCTAGTCTATCAACTCTGGATGTGAGTTCAGAAGTTTTCTATGGTAAAGGCTATGATGACAGTGATAGGCGTATCCCTGACATGACAATCATCACCAGGCAGCTTGGTTGGAAGCCAAAGACATCTCTTGACGAACTGTTGGATTCTACCCTTCAATATCAACATCAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCTTCAACTTGA

Protein sequence

>Msa0545750

MDRVNLDGKPITPISICMIGGGGFIGSHLTEKLMSETSHKAIVIDVSSEKINHLLDKSHPWANRIEFHQMNIKNDSRLETLVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKEPRYYKLKEDVSPCIFGPVHKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSDGVPRVLACFSNNLLRGEPLKLVDGGHSQRTFLYIKDAVEAVLLMIDNPDRANGHIFNVGNPDNEVSVKQLAELMIKVYAKVAGVPPSSLSTLDVSSEVFYGKGYDDSDRRIPDMTIITRQLGWKPKTSLDELLDSTLQYQHQTYSHAIKKELSKPST*