AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968990 MtrunA17_Chr3g0109121 96.825 252 7 1 1 251 1 252 0.0 501
Msa0968990 MtrunA17_Chr5g0433201 60.837 263 90 3 2 251 1 263 1.84e-95 280
Msa0968990 MtrunA17_Chr1g0188801 49.407 253 122 5 2 251 1 250 3.77e-69 213
Msa0968990 MtrunA17_Chr5g0440571 37.186 199 118 4 56 251 60 254 2.65e-35 126
Msa0968990 MtrunA17_Chr3g0118371 38.251 183 106 3 71 249 73 252 7.10e-34 123
Msa0968990 MtrunA17_Chr2g0281401 32.432 222 135 6 36 251 52 264 1.04e-28 109
Msa0968990 MtrunA17_Chr2g0280851 33.113 151 94 3 79 226 35 181 5.14e-23 92.8
Msa0968990 MtrunA17_Chr3g0135711 30.846 201 126 6 60 251 57 253 2.49e-22 92.4
Msa0968990 MtrunA17_Chr2g0330241 30.726 179 115 5 80 251 77 253 1.16e-21 90.9
Msa0968990 MtrunA17_Chr3g0118391 30.435 207 127 6 46 245 4 200 3.40e-21 88.6
Msa0968990 MtrunA17_Chr6g0479071 34.559 136 80 4 61 193 2 131 4.61e-19 82.8
Msa0968990 MtrunA17_Chr3g0115651 26.778 239 157 6 15 246 15 242 6.72e-19 83.2
Msa0968990 MtrunA17_Chr2g0321801 27.320 194 128 2 69 249 20 213 2.35e-18 80.9
Msa0968990 MtrunA17_Chr6g0478671 38.462 130 69 6 65 193 10 129 4.47e-18 80.1
Msa0968990 MtrunA17_Chr1g0177471 31.818 176 104 5 86 249 75 246 2.16e-17 79.0
Msa0968990 MtrunA17_Chr6g0479081 31.613 155 98 6 61 210 2 153 2.93e-17 77.8
Msa0968990 MtrunA17_Chr4g0067041 30.516 213 120 6 36 229 12 215 3.02e-17 78.6
Msa0968990 MtrunA17_Chr8g0382431 26.842 190 110 6 57 238 79 247 5.42e-17 78.2
Msa0968990 MtrunA17_Chr3g0118381 33.333 126 73 3 119 238 14 134 1.76e-16 74.3
Msa0968990 MtrunA17_Chr4g0025861 32.544 169 103 4 91 249 44 211 1.67e-15 73.2
Msa0968990 MtrunA17_Chr7g0267321 28.261 184 129 3 63 245 168 349 1.91e-15 74.7
Msa0968990 MtrunA17_Chr7g0267281 27.064 218 139 8 37 245 16 222 4.33e-15 72.4
Msa0968990 MtrunA17_Chr2g0324111 35.106 188 109 5 51 232 21 201 6.56e-15 71.6
Msa0968990 MtrunA17_Chr7g0267181 29.500 200 128 5 36 229 13 205 1.65e-12 65.1
Msa0968990 MtrunA17_Chr1g0177571 25.610 164 120 2 87 249 39 201 2.39e-12 64.3
Msa0968990 MtrunA17_Chr6g0478661 32.895 152 86 6 65 210 7 148 6.00e-12 63.2
Msa0968990 MtrunA17_Chr3g0127951 30.882 136 91 3 91 225 49 182 3.73e-11 60.8
Msa0968990 MtrunA17_Chr8g0342091 23.438 256 152 8 2 251 1 218 4.33e-11 60.8
Msa0968990 MtrunA17_Chr7g0267231 25.424 177 125 4 58 229 32 206 8.51e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968990 AT1G65690.1 56.078 255 104 4 2 251 1 252 1.48e-93 275
Msa0968990 AT5G36970.1 50.787 254 115 3 2 251 1 248 2.86e-83 249
Msa0968990 AT1G54540.1 42.400 250 133 2 2 251 1 239 1.06e-57 184
Msa0968990 AT2G27080.1 34.615 182 113 3 58 238 72 248 2.92e-34 124
Msa0968990 AT2G27080.2 34.615 182 113 3 58 238 72 248 2.92e-34 124
Msa0968990 AT3G11650.1 29.439 214 134 5 36 236 14 223 1.17e-24 98.6
Msa0968990 AT2G35980.1 35.417 192 110 6 40 226 18 200 1.32e-23 95.5
Msa0968990 AT5G21130.1 25.521 192 143 0 58 249 89 280 5.81e-22 92.4
Msa0968990 AT5G06320.1 31.250 208 122 7 36 229 10 210 1.81e-21 90.1
Msa0968990 AT3G52470.1 26.804 194 135 5 58 249 12 200 8.12e-17 77.0
Msa0968990 AT2G35460.1 26.087 184 129 5 71 249 57 238 3.88e-16 75.9
Msa0968990 AT3G44220.1 29.268 164 116 0 70 233 22 185 5.07e-16 74.7
Msa0968990 AT4G09590.1 29.944 177 120 4 75 249 29 203 1.69e-15 73.6
Msa0968990 AT5G22870.1 26.012 173 127 1 64 236 25 196 2.85e-15 72.8
Msa0968990 AT2G35970.1 29.944 177 120 4 75 249 29 203 6.93e-15 71.6
Msa0968990 AT1G17620.1 29.412 238 144 10 2 225 1 228 6.93e-15 72.8
Msa0968990 AT3G11660.1 25.275 182 131 4 69 247 20 199 1.43e-13 68.2
Msa0968990 AT2G22180.1 25.463 216 137 6 40 250 94 290 1.87e-13 68.9
Msa0968990 AT2G35960.1 25.444 169 124 2 82 249 35 202 6.34e-13 66.2
Msa0968990 AT5G53730.1 27.879 165 110 3 73 235 38 195 8.86e-13 65.9
Msa0968990 AT5G22200.1 30.216 139 97 0 87 225 43 181 2.94e-12 64.3
Msa0968990 AT2G46300.1 28.125 192 128 5 44 226 37 227 3.73e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTCTGTCTACGGAGTATT+TGG 0.188778 6_4:-375240 None:intergenic
TATATTCCAATCTTCTTGTT+AGG 0.211306 6_4:-375338 None:intergenic
CTTTATACCAAGCACTTATA+TGG 0.275071 6_4:-375376 None:intergenic
TCCTGTGTTTGACCTGTTAA+AGG 0.282421 6_4:-375470 None:intergenic
TAATATACCACTTAATATTA+AGG 0.282779 6_4:+375541 Msa0968990:CDS
GTCTCTGCCGAAATTCTATC+AGG 0.301530 6_4:+375418 Msa0968990:CDS
TCGTGTTAGGTGCAGCCTTC+AGG 0.318841 6_4:+375619 Msa0968990:CDS
AATTCATCCTGCTAATGATT+TGG 0.329938 6_4:+374977 Msa0968990:CDS
CGATGACCCTGATAGAATTT+CGG 0.348072 6_4:-375425 None:intergenic
GTGCTTAATCTACCTTTAAC+AGG 0.355672 6_4:+375458 Msa0968990:CDS
TTAGAGTCAAGTTTCGTGTT+AGG 0.366756 6_4:+375606 Msa0968990:CDS
TTGCAATTGGCATCACTGTT+GGG 0.370285 6_4:+375186 Msa0968990:CDS
CTGATTCTTATAATTGCAAT+TGG 0.380687 6_4:+375173 Msa0968990:CDS
TGCAGTTACTGTTACATTGA+AGG 0.386255 6_4:-375309 None:intergenic
ACGGAGTATTTGGGAAGCTT+TGG 0.388916 6_4:-375230 None:intergenic
ATATTCCAATCTTCTTGTTA+GGG 0.397601 6_4:-375337 None:intergenic
AATTATAAGAATCAGCAATA+TGG 0.406684 6_4:-375165 None:intergenic
TGATTAACCTTAATATTAAG+TGG 0.432715 6_4:-375548 None:intergenic
AGAAACCCTAACAAGAAGAT+TGG 0.436387 6_4:+375332 Msa0968990:CDS
AGTGCTTGGTATAAAGAAAC+AGG 0.436753 6_4:+375383 Msa0968990:CDS
CTCACTGGAAAGTGGCGTTT+CGG 0.439054 6_4:-375083 None:intergenic
CAGATAGTAAATGTAAGTTC+AGG 0.455434 6_4:+375678 Msa0968990:CDS
TGTGACTCCAAATCATTAGC+AGG 0.471018 6_4:-374984 None:intergenic
GGAAAGTGGCGTTTCGGAAG+AGG 0.477952 6_4:-375077 None:intergenic
AGTCTGTCTACGGAGTATTT+GGG 0.485802 6_4:-375239 None:intergenic
ATTGCAATTGGCATCACTGT+TGG 0.490412 6_4:+375185 Msa0968990:CDS
CGAGGAAACAAAGGAACTGT+AGG 0.498817 6_4:-375014 None:intergenic
AGAAAAGAAGTTGCTGCTGC+AGG 0.502944 6_4:+375123 Msa0968990:CDS
CAGCAGCAGCTACAAGAAGC+AGG 0.503374 6_4:+375518 Msa0968990:CDS
GGTCAAACACAGGATGCAAC+TGG 0.504890 6_4:+375479 Msa0968990:CDS
TCGGACTTTGAAGTGTTTCG+AGG 0.508784 6_4:-375032 None:intergenic
ATTGGAATATACTATGTAAG+TGG 0.516967 6_4:+375350 Msa0968990:CDS
CAGAATGTGAGGGTTAAACT+TGG 0.517481 6_4:+375569 Msa0968990:CDS
AGCCTTCAGGTGGATAGTCT+TGG 0.518857 6_4:+375632 Msa0968990:CDS
GTAAATGTAAGTTCAGGCTC+AGG 0.540224 6_4:+375684 Msa0968990:CDS
AAGAAACAGGACTGTGTGAA+GGG 0.543431 6_4:+375396 Msa0968990:CDS
TGCAATTGGCATCACTGTTG+GGG 0.544430 6_4:+375187 Msa0968990:CDS
CGAAATTCTATCAGGGTCAT+CGG 0.547495 6_4:+375426 Msa0968990:CDS
TGTTATTCTGAGTCTGTCTA+CGG 0.555736 6_4:-375249 None:intergenic
GGTGGATGAGTATGCCTCAC+TGG 0.556234 6_4:-375098 None:intergenic
TTAAGGTTAATCAGAATGTG+AGG 0.560781 6_4:+375558 Msa0968990:CDS
GTGGAAGCCATATAAGTGCT+TGG 0.564620 6_4:+375369 Msa0968990:CDS
TGTTAGGTGCAGCCTTCAGG+TGG 0.567547 6_4:+375622 Msa0968990:CDS
TTCGGAAGAGGTGGATGTGA+AGG 0.571122 6_4:-375065 None:intergenic
ATGTGAAGGACTGCGTCGAT+CGG 0.572442 6_4:-375051 None:intergenic
AAAGAAACAGGACTGTGTGA+AGG 0.583033 6_4:+375395 Msa0968990:CDS
GAGTATGCCTCACTGGAAAG+TGG 0.595100 6_4:-375091 None:intergenic
GAAGTGTTTCGAGGAAACAA+AGG 0.599067 6_4:-375023 None:intergenic
GAAGCTTTGGCCTAAAAGCA+AGG 0.600662 6_4:-375217 None:intergenic
AAGAATCAGCAATATGGTGA+AGG 0.607184 6_4:-375159 None:intergenic
AAGTGGCGTTTCGGAAGAGG+TGG 0.610030 6_4:-375074 None:intergenic
TAAGGTTAATCAGAATGTGA+GGG 0.620913 6_4:+375559 Msa0968990:CDS
TGTTAAAGGTAGATTAAGCA+CGG 0.622717 6_4:-375456 None:intergenic
CACCAAGACTATCCACCTGA+AGG 0.627283 6_4:-375634 None:intergenic
ACCTTTAACAGGTCAAACAC+AGG 0.638297 6_4:+375469 Msa0968990:CDS
TCTCTGCCGAAATTCTATCA+GGG 0.641999 6_4:+375419 Msa0968990:CDS
CGAAACGCCACTTTCCAGTG+AGG 0.677018 6_4:+375084 Msa0968990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATACCACTTAATATTA+AGG + chr6_4:375541-375560 Msa0968990:CDS 15.0%
!! TAATATACCACTTAATATTA+AGG + chr6_4:375541-375560 Msa0968990:CDS 15.0%
!! AATTATAAGAATCAGCAATA+TGG - chr6_4:375168-375187 None:intergenic 20.0%
!! TGATTAACCTTAATATTAAG+TGG - chr6_4:375551-375570 None:intergenic 20.0%
!! AATTATAAGAATCAGCAATA+TGG - chr6_4:375168-375187 None:intergenic 20.0%
!! TGATTAACCTTAATATTAAG+TGG - chr6_4:375551-375570 None:intergenic 20.0%
! CTGATTCTTATAATTGCAAT+TGG + chr6_4:375173-375192 Msa0968990:CDS 25.0%
! ATATTCCAATCTTCTTGTTA+GGG - chr6_4:375340-375359 None:intergenic 25.0%
! TATATTCCAATCTTCTTGTT+AGG - chr6_4:375341-375360 None:intergenic 25.0%
! ATTGGAATATACTATGTAAG+TGG + chr6_4:375350-375369 Msa0968990:CDS 25.0%
! CTGATTCTTATAATTGCAAT+TGG + chr6_4:375173-375192 Msa0968990:CDS 25.0%
! ATATTCCAATCTTCTTGTTA+GGG - chr6_4:375340-375359 None:intergenic 25.0%
! TATATTCCAATCTTCTTGTT+AGG - chr6_4:375341-375360 None:intergenic 25.0%
! ATTGGAATATACTATGTAAG+TGG + chr6_4:375350-375369 Msa0968990:CDS 25.0%
AATTCATCCTGCTAATGATT+TGG + chr6_4:374977-374996 Msa0968990:CDS 30.0%
CTTTATACCAAGCACTTATA+TGG - chr6_4:375379-375398 None:intergenic 30.0%
TGTTAAAGGTAGATTAAGCA+CGG - chr6_4:375459-375478 None:intergenic 30.0%
TTAAGGTTAATCAGAATGTG+AGG + chr6_4:375558-375577 Msa0968990:CDS 30.0%
TAAGGTTAATCAGAATGTGA+GGG + chr6_4:375559-375578 Msa0968990:CDS 30.0%
CAGATAGTAAATGTAAGTTC+AGG + chr6_4:375678-375697 Msa0968990:CDS 30.0%
AATTCATCCTGCTAATGATT+TGG + chr6_4:374977-374996 Msa0968990:CDS 30.0%
CTTTATACCAAGCACTTATA+TGG - chr6_4:375379-375398 None:intergenic 30.0%
TGTTAAAGGTAGATTAAGCA+CGG - chr6_4:375459-375478 None:intergenic 30.0%
TTAAGGTTAATCAGAATGTG+AGG + chr6_4:375558-375577 Msa0968990:CDS 30.0%
TAAGGTTAATCAGAATGTGA+GGG + chr6_4:375559-375578 Msa0968990:CDS 30.0%
CAGATAGTAAATGTAAGTTC+AGG + chr6_4:375678-375697 Msa0968990:CDS 30.0%
AAGAATCAGCAATATGGTGA+AGG - chr6_4:375162-375181 None:intergenic 35.0%
TGTTATTCTGAGTCTGTCTA+CGG - chr6_4:375252-375271 None:intergenic 35.0%
TGCAGTTACTGTTACATTGA+AGG - chr6_4:375312-375331 None:intergenic 35.0%
AGAAACCCTAACAAGAAGAT+TGG + chr6_4:375332-375351 Msa0968990:CDS 35.0%
AGTGCTTGGTATAAAGAAAC+AGG + chr6_4:375383-375402 Msa0968990:CDS 35.0%
GTGCTTAATCTACCTTTAAC+AGG + chr6_4:375458-375477 Msa0968990:CDS 35.0%
TTAGAGTCAAGTTTCGTGTT+AGG + chr6_4:375606-375625 Msa0968990:CDS 35.0%
AAGAATCAGCAATATGGTGA+AGG - chr6_4:375162-375181 None:intergenic 35.0%
TGTTATTCTGAGTCTGTCTA+CGG - chr6_4:375252-375271 None:intergenic 35.0%
TGCAGTTACTGTTACATTGA+AGG - chr6_4:375312-375331 None:intergenic 35.0%
AGAAACCCTAACAAGAAGAT+TGG + chr6_4:375332-375351 Msa0968990:CDS 35.0%
AGTGCTTGGTATAAAGAAAC+AGG + chr6_4:375383-375402 Msa0968990:CDS 35.0%
GTGCTTAATCTACCTTTAAC+AGG + chr6_4:375458-375477 Msa0968990:CDS 35.0%
TTAGAGTCAAGTTTCGTGTT+AGG + chr6_4:375606-375625 Msa0968990:CDS 35.0%
TGTGACTCCAAATCATTAGC+AGG - chr6_4:374987-375006 None:intergenic 40.0%
! GAAGTGTTTCGAGGAAACAA+AGG - chr6_4:375026-375045 None:intergenic 40.0%
! CAGCAACTTCTTTTCTTTGG+TGG - chr6_4:375119-375138 None:intergenic 40.0%
! CAGCAGCAACTTCTTTTCTT+TGG - chr6_4:375122-375141 None:intergenic 40.0%
ATTGCAATTGGCATCACTGT+TGG + chr6_4:375185-375204 Msa0968990:CDS 40.0%
TTGCAATTGGCATCACTGTT+GGG + chr6_4:375186-375205 Msa0968990:CDS 40.0%
! AGTCTGTCTACGGAGTATTT+GGG - chr6_4:375242-375261 None:intergenic 40.0%
AAAGAAACAGGACTGTGTGA+AGG + chr6_4:375395-375414 Msa0968990:CDS 40.0%
AAGAAACAGGACTGTGTGAA+GGG + chr6_4:375396-375415 Msa0968990:CDS 40.0%
TCTCTGCCGAAATTCTATCA+GGG + chr6_4:375419-375438 Msa0968990:CDS 40.0%
CGATGACCCTGATAGAATTT+CGG - chr6_4:375428-375447 None:intergenic 40.0%
CGAAATTCTATCAGGGTCAT+CGG + chr6_4:375426-375445 Msa0968990:CDS 40.0%
ACCTTTAACAGGTCAAACAC+AGG + chr6_4:375469-375488 Msa0968990:CDS 40.0%
TCCTGTGTTTGACCTGTTAA+AGG - chr6_4:375473-375492 None:intergenic 40.0%
CAGAATGTGAGGGTTAAACT+TGG + chr6_4:375569-375588 Msa0968990:CDS 40.0%
GTAAATGTAAGTTCAGGCTC+AGG + chr6_4:375684-375703 Msa0968990:CDS 40.0%
TGTGACTCCAAATCATTAGC+AGG - chr6_4:374987-375006 None:intergenic 40.0%
! GAAGTGTTTCGAGGAAACAA+AGG - chr6_4:375026-375045 None:intergenic 40.0%
! CAGCAACTTCTTTTCTTTGG+TGG - chr6_4:375119-375138 None:intergenic 40.0%
! CAGCAGCAACTTCTTTTCTT+TGG - chr6_4:375122-375141 None:intergenic 40.0%
ATTGCAATTGGCATCACTGT+TGG + chr6_4:375185-375204 Msa0968990:CDS 40.0%
TTGCAATTGGCATCACTGTT+GGG + chr6_4:375186-375205 Msa0968990:CDS 40.0%
! AGTCTGTCTACGGAGTATTT+GGG - chr6_4:375242-375261 None:intergenic 40.0%
AAAGAAACAGGACTGTGTGA+AGG + chr6_4:375395-375414 Msa0968990:CDS 40.0%
AAGAAACAGGACTGTGTGAA+GGG + chr6_4:375396-375415 Msa0968990:CDS 40.0%
TCTCTGCCGAAATTCTATCA+GGG + chr6_4:375419-375438 Msa0968990:CDS 40.0%
CGATGACCCTGATAGAATTT+CGG - chr6_4:375428-375447 None:intergenic 40.0%
CGAAATTCTATCAGGGTCAT+CGG + chr6_4:375426-375445 Msa0968990:CDS 40.0%
ACCTTTAACAGGTCAAACAC+AGG + chr6_4:375469-375488 Msa0968990:CDS 40.0%
TCCTGTGTTTGACCTGTTAA+AGG - chr6_4:375473-375492 None:intergenic 40.0%
CAGAATGTGAGGGTTAAACT+TGG + chr6_4:375569-375588 Msa0968990:CDS 40.0%
GTAAATGTAAGTTCAGGCTC+AGG + chr6_4:375684-375703 Msa0968990:CDS 40.0%
CGAGGAAACAAAGGAACTGT+AGG - chr6_4:375017-375036 None:intergenic 45.0%
!! TCGGACTTTGAAGTGTTTCG+AGG - chr6_4:375035-375054 None:intergenic 45.0%
AGAAAAGAAGTTGCTGCTGC+AGG + chr6_4:375123-375142 Msa0968990:CDS 45.0%
TGCAATTGGCATCACTGTTG+GGG + chr6_4:375187-375206 Msa0968990:CDS 45.0%
! GAAGCTTTGGCCTAAAAGCA+AGG - chr6_4:375220-375239 None:intergenic 45.0%
! ACGGAGTATTTGGGAAGCTT+TGG - chr6_4:375233-375252 None:intergenic 45.0%
! GAGTCTGTCTACGGAGTATT+TGG - chr6_4:375243-375262 None:intergenic 45.0%
GTGGAAGCCATATAAGTGCT+TGG + chr6_4:375369-375388 Msa0968990:CDS 45.0%
GTCTCTGCCGAAATTCTATC+AGG + chr6_4:375418-375437 Msa0968990:CDS 45.0%
CGAGGAAACAAAGGAACTGT+AGG - chr6_4:375017-375036 None:intergenic 45.0%
!! TCGGACTTTGAAGTGTTTCG+AGG - chr6_4:375035-375054 None:intergenic 45.0%
AGAAAAGAAGTTGCTGCTGC+AGG + chr6_4:375123-375142 Msa0968990:CDS 45.0%
TGCAATTGGCATCACTGTTG+GGG + chr6_4:375187-375206 Msa0968990:CDS 45.0%
! GAAGCTTTGGCCTAAAAGCA+AGG - chr6_4:375220-375239 None:intergenic 45.0%
! ACGGAGTATTTGGGAAGCTT+TGG - chr6_4:375233-375252 None:intergenic 45.0%
! GAGTCTGTCTACGGAGTATT+TGG - chr6_4:375243-375262 None:intergenic 45.0%
GTGGAAGCCATATAAGTGCT+TGG + chr6_4:375369-375388 Msa0968990:CDS 45.0%
GTCTCTGCCGAAATTCTATC+AGG + chr6_4:375418-375437 Msa0968990:CDS 45.0%
! ATGTGAAGGACTGCGTCGAT+CGG - chr6_4:375054-375073 None:intergenic 50.0%
TTCGGAAGAGGTGGATGTGA+AGG - chr6_4:375068-375087 None:intergenic 50.0%
CTCACTGGAAAGTGGCGTTT+CGG - chr6_4:375086-375105 None:intergenic 50.0%
GAGTATGCCTCACTGGAAAG+TGG - chr6_4:375094-375113 None:intergenic 50.0%
!! GGGCACTCTACCTTGCTTTT+AGG + chr6_4:375207-375226 Msa0968990:CDS 50.0%
GGTCAAACACAGGATGCAAC+TGG + chr6_4:375479-375498 Msa0968990:CDS 50.0%
AGCCTTCAGGTGGATAGTCT+TGG + chr6_4:375632-375651 Msa0968990:CDS 50.0%
CACCAAGACTATCCACCTGA+AGG - chr6_4:375637-375656 None:intergenic 50.0%
! ATGTGAAGGACTGCGTCGAT+CGG - chr6_4:375054-375073 None:intergenic 50.0%
TTCGGAAGAGGTGGATGTGA+AGG - chr6_4:375068-375087 None:intergenic 50.0%
CTCACTGGAAAGTGGCGTTT+CGG - chr6_4:375086-375105 None:intergenic 50.0%
GAGTATGCCTCACTGGAAAG+TGG - chr6_4:375094-375113 None:intergenic 50.0%
!! GGGCACTCTACCTTGCTTTT+AGG + chr6_4:375207-375226 Msa0968990:CDS 50.0%
GGTCAAACACAGGATGCAAC+TGG + chr6_4:375479-375498 Msa0968990:CDS 50.0%
AGCCTTCAGGTGGATAGTCT+TGG + chr6_4:375632-375651 Msa0968990:CDS 50.0%
CACCAAGACTATCCACCTGA+AGG - chr6_4:375637-375656 None:intergenic 50.0%
AAGTGGCGTTTCGGAAGAGG+TGG - chr6_4:375077-375096 None:intergenic 55.0%
GGAAAGTGGCGTTTCGGAAG+AGG - chr6_4:375080-375099 None:intergenic 55.0%
! CGAAACGCCACTTTCCAGTG+AGG + chr6_4:375084-375103 Msa0968990:CDS 55.0%
GGTGGATGAGTATGCCTCAC+TGG - chr6_4:375101-375120 None:intergenic 55.0%
CAGCAGCAGCTACAAGAAGC+AGG + chr6_4:375518-375537 Msa0968990:CDS 55.0%
TCGTGTTAGGTGCAGCCTTC+AGG + chr6_4:375619-375638 Msa0968990:CDS 55.0%
TGTTAGGTGCAGCCTTCAGG+TGG + chr6_4:375622-375641 Msa0968990:CDS 55.0%
AAGTGGCGTTTCGGAAGAGG+TGG - chr6_4:375077-375096 None:intergenic 55.0%
GGAAAGTGGCGTTTCGGAAG+AGG - chr6_4:375080-375099 None:intergenic 55.0%
! CGAAACGCCACTTTCCAGTG+AGG + chr6_4:375084-375103 Msa0968990:CDS 55.0%
GGTGGATGAGTATGCCTCAC+TGG - chr6_4:375101-375120 None:intergenic 55.0%
CAGCAGCAGCTACAAGAAGC+AGG + chr6_4:375518-375537 Msa0968990:CDS 55.0%
TCGTGTTAGGTGCAGCCTTC+AGG + chr6_4:375619-375638 Msa0968990:CDS 55.0%
TGTTAGGTGCAGCCTTCAGG+TGG + chr6_4:375622-375641 Msa0968990:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 374957 375712 374957 ID=Msa0968990;Name=Msa0968990
chr6_4 mRNA 374957 375712 374957 ID=Msa0968990-mRNA-1;Parent=Msa0968990;Name=Msa0968990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|251
chr6_4 exon 374957 375712 374957 ID=Msa0968990-mRNA-1:exon:190;Parent=Msa0968990-mRNA-1
chr6_4 CDS 374957 375712 374957 ID=Msa0968990-mRNA-1:cds;Parent=Msa0968990-mRNA-1
Gene Sequence

>Msa0968990

ATGATGACAGATCATCAGAGAATTCATCCTGCTAATGATTTGGAGTCACAAAACAAACCTACAGTTCCTTTGTTTCCTCGAAACACTTCAAAGTCCGATCGACGCAGTCCTTCACATCCACCTCTTCCGAAACGCCACTTTCCAGTGAGGCATACTCATCCACCAAAGAAAAGAAGTTGCTGCTGCAGGTTCTTATGTTGTACCTTCACCATATTGCTGATTCTTATAATTGCAATTGGCATCACTGTTGGGGCACTCTACCTTGCTTTTAGGCCAAAGCTTCCCAAATACTCCGTAGACAGACTCAGAATAACACAGTTCAATCTTTCTGATGACAACAGTCTCTTTGTTACCTTCAATGTAACAGTAACTGCAAGAAACCCTAACAAGAAGATTGGAATATACTATGTAAGTGGAAGCCATATAAGTGCTTGGTATAAAGAAACAGGACTGTGTGAAGGGTCTCTGCCGAAATTCTATCAGGGTCATCGGAATACAACCGTGCTTAATCTACCTTTAACAGGTCAAACACAGGATGCAACTGGTTTATTTAATACGTTGCAGCAGCAGCTACAAGAAGCAGGTAATATACCACTTAATATTAAGGTTAATCAGAATGTGAGGGTTAAACTTGGTAAGTTGAAGATCTTTAGAGTCAAGTTTCGTGTTAGGTGCAGCCTTCAGGTGGATAGTCTTGGTGCTGATAATGATATTAGTATTTCAGATAGTAAATGTAAGTTCAGGCTCAGGCTATGA

Protein sequence

>Msa0968990

MMTDHQRIHPANDLESQNKPTVPLFPRNTSKSDRRSPSHPPLPKRHFPVRHTHPPKKRSCCCRFLCCTFTILLILIIAIGITVGALYLAFRPKLPKYSVDRLRITQFNLSDDNSLFVTFNVTVTARNPNKKIGIYYVSGSHISAWYKETGLCEGSLPKFYQGHRNTTVLNLPLTGQTQDATGLFNTLQQQLQEAGNIPLNIKVNQNVRVKLGKLKIFRVKFRVRCSLQVDSLGADNDISISDSKCKFRLRL*