AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330400 MtrunA17_Chr4g0058701 92.159 778 20 2 1 737 1 778 0.0 1473
Msa1330400 MtrunA17_Chr3g0117141 66.013 765 207 6 21 737 27 786 0.0 1028
Msa1330400 MtrunA17_Chr6g0449521 59.487 780 258 8 5 737 19 787 0.0 919
Msa1330400 MtrunA17_Chr4g0064311 36.196 757 383 14 20 720 102 814 1.38e-159 483
Msa1330400 MtrunA17_Chr1g0173521 36.506 767 384 16 20 727 62 784 2.62e-153 465
Msa1330400 MtrunA17_Chr5g0447201 36.933 750 376 16 22 705 7 725 1.66e-151 459
Msa1330400 MtrunA17_Chr7g0267991 47.246 472 198 8 295 724 383 845 1.57e-140 434
Msa1330400 MtrunA17_Chr7g0267991 44.025 318 156 5 1 307 1 307 5.04e-72 251
Msa1330400 MtrunA17_Chr3g0116641 32.741 788 413 20 23 737 8 751 4.54e-136 419
Msa1330400 MtrunA17_Chr7g0257731 34.831 623 311 15 175 725 2 601 3.13e-111 350
Msa1330400 MtrunA17_Chr8g0380141 48.214 336 132 3 302 597 377 710 2.63e-107 343
Msa1330400 MtrunA17_Chr8g0380141 41.509 318 163 5 1 307 1 306 5.88e-70 243
Msa1330400 MtrunA17_Chr1g0201161 56.654 263 112 2 288 550 367 627 1.09e-100 330
Msa1330400 MtrunA17_Chr1g0201161 42.138 318 166 4 1 307 1 311 2.63e-70 247
Msa1330400 MtrunA17_Chr1g0201161 34.659 176 110 4 551 724 737 909 4.63e-25 111
Msa1330400 MtrunA17_Chr7g0270181 42.061 359 156 6 408 724 2 350 1.54e-88 282
Msa1330400 MtrunA17_Chr7g0257741 39.726 146 74 4 22 161 7 144 8.18e-25 101
Msa1330400 MtrunA17_Chr8g0380131 37.255 102 60 3 624 724 5 103 2.66e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330400 AT5G40390.1 54.867 791 295 9 1 737 1 783 0.0 883
Msa1330400 AT4G01970.2 40.696 833 353 18 25 724 85 909 0.0 600
Msa1330400 AT4G01970.1 40.696 833 353 18 25 724 38 862 0.0 600
Msa1330400 AT5G20250.3 38.573 757 368 16 20 716 5 724 1.27e-161 485
Msa1330400 AT5G20250.1 38.573 757 368 16 20 716 5 724 1.27e-161 485
Msa1330400 AT5G20250.2 38.573 757 368 16 20 716 5 724 1.27e-161 485
Msa1330400 AT5G20250.4 38.573 757 368 16 20 716 100 819 2.13e-160 485
Msa1330400 AT3G57520.1 35.632 783 392 16 22 723 7 758 3.87e-157 474
Msa1330400 AT1G55740.1 36.521 753 388 14 22 714 7 729 1.44e-146 447
Msa1330400 AT3G57520.2 36.484 677 346 13 22 644 7 653 4.58e-141 429
Msa1330400 AT3G57520.3 40.884 543 279 10 22 550 7 521 1.78e-134 409

Find 185 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTAAAGGAGGAATTT+AGG 0.117893 8_4:-49534336 Msa1330400:CDS
GGAATTTAGGGGTTTATTAA+AGG 0.167276 8_4:-49534323 Msa1330400:CDS
CCTGATATAGTTGATAAATT+TGG 0.170065 8_4:-49534640 Msa1330400:CDS
TCAACACCTTTCATGCAAAT+TGG 0.176895 8_4:+49531945 None:intergenic
GGATTTAAAGGAGGAATTTA+GGG 0.242835 8_4:-49534335 Msa1330400:CDS
TTTAATGAACGAAGCGATTA+AGG 0.244053 8_4:-49534713 Msa1330400:CDS
GCTTCGTTCATTAAAATATA+AGG 0.244616 8_4:+49534721 None:intergenic
TTGCTCCATTCAATGTCTTT+AGG 0.259060 8_4:+49531978 None:intergenic
ATAACAGTATAGTGGAGTTT+TGG 0.267213 8_4:-49532096 Msa1330400:intron
AAGGAGTATGATGAATCTTT+AGG 0.272087 8_4:-49534376 Msa1330400:CDS
TCCCATCCATAAGCTGTTAT+AGG 0.295635 8_4:+49532791 None:intergenic
GTCATTAGCTCGAAACTAAA+AGG 0.296547 8_4:+49531843 None:intergenic
CCATCAATCATACAACTTAT+CGG 0.299644 8_4:+49531645 None:intergenic
GCCGGAGTCGGTGGTGGTTC+CGG 0.313171 8_4:-49534236 Msa1330400:CDS
TGGGTTTGTGAGGGATTTAA+AGG 0.320243 8_4:-49534347 Msa1330400:CDS
TTGAAATCTGTTGGTATTGA+TGG 0.321054 8_4:-49534088 Msa1330400:CDS
TCTTCAAACACCACCGTTGC+TGG 0.336587 8_4:-49535099 Msa1330400:CDS
TGAGAGGTGCATGACGGATT+TGG 0.338428 8_4:-49534194 Msa1330400:CDS
TACAACCGACATGCCTCTTC+TGG 0.339765 8_4:+49534130 None:intergenic
ATGGGACTTGAGTGAGGATT+GGG 0.346557 8_4:+49535166 None:intergenic
CAACACCTTTCATGCAAATT+GGG 0.350937 8_4:+49531946 None:intergenic
CTCCTTGAGGGTCCACCTTA+AGG 0.352532 8_4:+49534593 None:intergenic
AGTGAGGATTGGGTGGTTAT+TGG 0.355885 8_4:+49535176 None:intergenic
GCATATTCAGATTTAAACTA+TGG 0.355889 8_4:-49534993 Msa1330400:CDS
CCAAATTTATCAACTATATC+AGG 0.357607 8_4:+49534640 None:intergenic
GGAGTGAAAGAAGGTGTTAA+GGG 0.361752 8_4:-49534574 Msa1330400:CDS
CCGATAAGTTGTATGATTGA+TGG 0.367738 8_4:-49531645 Msa1330400:CDS
GGTGTTAAGGGTTTAGTAGA+AGG 0.379904 8_4:-49534562 Msa1330400:CDS
CGGAGGTTCAATTATGTCAT+TGG 0.384333 8_4:-49531745 Msa1330400:CDS
TATGATGAATCTTTAGGTAT+TGG 0.388186 8_4:-49534370 Msa1330400:CDS
AAGATAATGGAGATTGGAGT+TGG 0.391962 8_4:-49534163 Msa1330400:CDS
GGAGTGATGGTTATGTTTGA+TGG 0.392650 8_4:+49535147 None:intergenic
GCCGCTTCTCGTGCAATCTC+TGG 0.397589 8_4:-49532708 Msa1330400:CDS
CACCTTCTTTCACTCCTTGA+GGG 0.397852 8_4:+49534581 None:intergenic
AACGTAGGGACGTTGTTTAA+CGG 0.399851 8_4:+49534894 None:intergenic
TTGTTCTGCAAGGTTCTCAA+TGG 0.407213 8_4:-49531565 Msa1330400:CDS
GATGGGACTTGAGTGAGGAT+TGG 0.412194 8_4:+49535165 None:intergenic
CAAGTCCTAAAGACATTGAA+TGG 0.412198 8_4:-49531983 Msa1330400:CDS
CATACAACTTATCGGCTTCT+CGG 0.415583 8_4:+49531653 None:intergenic
TCAATTCAATTTGCTCCAAT+CGG 0.425500 8_4:-49531789 Msa1330400:CDS
TCCGGCATCCCTTCAACATT+AGG 0.427596 8_4:+49534253 None:intergenic
AGAATTGGGGTGAGAGGTCA+TGG 0.428267 8_4:-49531696 Msa1330400:CDS
GAGATGCTGTCAGAGGAATA+TGG 0.428417 8_4:-49533330 Msa1330400:CDS
TTTGGCGGTGGTGAAGATAA+TGG 0.430408 8_4:-49534176 Msa1330400:CDS
TGCAACCAATAGGTACCGTT+TGG 0.431398 8_4:+49532837 None:intergenic
TCCCTTGGCCTTGTTCTGCA+AGG 0.433474 8_4:-49531575 Msa1330400:CDS
GTACCGTTTGGATCCCCAGC+TGG 0.439136 8_4:+49532849 None:intergenic
TAGGTATTGGTGGGTTTGTG+AGG 0.445773 8_4:-49534357 Msa1330400:CDS
TGCTGCTTATAACAGTATAG+TGG 0.447051 8_4:-49532104 Msa1330400:intron
GGGATCCAAACGGTACCTAT+TGG 0.449564 8_4:-49532842 Msa1330400:CDS
CATTCTCATTTGAAATCTGT+TGG 0.452232 8_4:-49534097 Msa1330400:CDS
ACCAACTCGTCCAAGTGAAA+TGG 0.458370 8_4:+49533179 None:intergenic
AGGTATTGGTGGGTTTGTGA+GGG 0.460316 8_4:-49534356 Msa1330400:CDS
ACCGTTGCTGGTTGCTTCGT+CGG 0.464810 8_4:-49535087 Msa1330400:CDS
AGGAGTGAAAGAAGGTGTTA+AGG 0.465288 8_4:-49534575 Msa1330400:CDS
GATGAATCTTTAGGTATTGG+TGG 0.466543 8_4:-49534367 Msa1330400:CDS
TTTGGTGCACGGACCCAGCT+GGG 0.466953 8_4:-49532863 Msa1330400:CDS
ACAGAATCGCTAACATATAT+CGG 0.467807 8_4:+49532681 None:intergenic
CTTCCCAACATTTGTTCACC+AGG 0.470201 8_4:+49534430 None:intergenic
CAGAACAAGGCCAAGGGACA+TGG 0.470570 8_4:+49531580 None:intergenic
TCATCAATGATTACAAAACT+TGG 0.472983 8_4:+49534529 None:intergenic
AACTATGGTGGAGCACTCAC+TGG 0.477809 8_4:-49534978 Msa1330400:CDS
GTTAAGGGTTTAGTAGAAGG+TGG 0.483094 8_4:-49534559 Msa1330400:CDS
GCCGGAACCACCACCGACTC+CGG 0.483490 8_4:+49534235 None:intergenic
CAGGGCACCACCCTCCTCCT+TGG 0.486184 8_4:+49532060 None:intergenic
GTGACATCCTTGCAACCAAT+AGG 0.487759 8_4:+49532827 None:intergenic
TGCAACGATTTCATGTTCCT+TGG 0.491430 8_4:-49533210 Msa1330400:CDS
AAGACATTGAATGGAGCAAA+GGG 0.491837 8_4:-49531974 Msa1330400:CDS
TATACCTGGTGAACAAATGT+TGG 0.493359 8_4:-49534434 Msa1330400:CDS
ACCATTTCACTTGGACGAGT+TGG 0.498213 8_4:-49533180 Msa1330400:intron
TCAATTTGCTCCAATCGGAT+TGG 0.498694 8_4:-49531784 Msa1330400:CDS
ACACCTTCTTTCACTCCTTG+AGG 0.501161 8_4:+49534580 None:intergenic
ATACCTGGTGAACAAATGTT+GGG 0.502624 8_4:-49534433 Msa1330400:CDS
CAAGAAGTTTGAATGTTCCA+AGG 0.503575 8_4:+49534677 None:intergenic
TGCCTATAACAGCTTATGGA+TGG 0.503918 8_4:-49532793 Msa1330400:CDS
GAGTGATGGTTATGTTTGAT+GGG 0.503927 8_4:+49535148 None:intergenic
AATGGAGATTGGAGTTGGAT+TGG 0.504103 8_4:-49534158 Msa1330400:CDS
GGGATTAGACCTAATGTTGA+AGG 0.504892 8_4:-49534262 Msa1330400:CDS
ATCGTTGCACTGTTGCATAC+TGG 0.507352 8_4:+49533224 None:intergenic
TGAGAGGTCATGGAGAAATG+AGG 0.508249 8_4:-49531686 Msa1330400:CDS
TGGTGGGATGGGAATTGGCA+TGG 0.509869 8_4:+49535226 None:intergenic
CTTCAAGTTACTCAAGAAGC+TGG 0.516648 8_4:-49532646 Msa1330400:intron
GGTTCCGGCGAAATTGTCAC+CGG 0.516894 8_4:-49534221 Msa1330400:CDS
AGGGATGCCGGAGTCGGTGG+TGG 0.517467 8_4:-49534242 Msa1330400:CDS
TTTGTGAGGTGGTGGAGTGA+TGG 0.518024 8_4:+49535134 None:intergenic
GTGGTGAAGATAATGGAGAT+TGG 0.519138 8_4:-49534169 Msa1330400:CDS
ATAAATTTGGATGGTGTACA+TGG 0.521845 8_4:-49534627 Msa1330400:CDS
AGTTTGAATTGTTCTATACC+TGG 0.521967 8_4:-49534448 Msa1330400:CDS
ACCTAATGTTGAAGGGATGC+CGG 0.522847 8_4:-49534254 Msa1330400:CDS
ATGAATCTTTAGGTATTGGT+GGG 0.523208 8_4:-49534366 Msa1330400:CDS
TGGTGGAGCACTCACTGGAC+AGG 0.523576 8_4:-49534973 Msa1330400:CDS
CTATTCAATTGCCAAGGAGG+AGG 0.523965 8_4:-49532071 Msa1330400:CDS
GGTGGGATGGGAATTGGCAT+GGG 0.524201 8_4:+49535227 None:intergenic
ATTGTGCCTATAACAGCTTA+TGG 0.524942 8_4:-49532797 Msa1330400:CDS
CAATGACATAATTGAACCTC+CGG 0.526517 8_4:+49531746 None:intergenic
GTGTCGGCTGCTTGGTCCGT+CGG 0.526644 8_4:+49535056 None:intergenic
GAGGCATGTCGGTTGTATGA+TGG 0.527459 8_4:-49534124 Msa1330400:CDS
GATTGAAACATGTCCCAATC+TGG 0.528396 8_4:+49532756 None:intergenic
GCTTCTCGTGCAATCTCTGG+TGG 0.532644 8_4:-49532705 Msa1330400:CDS
GAGAGGTCATGGAGAAATGA+GGG 0.532941 8_4:-49531685 Msa1330400:CDS
TAGTTTAAATCTGAATATGC+TGG 0.534012 8_4:+49534996 None:intergenic
GAAACTATGTGTCGGCTGCT+TGG 0.534850 8_4:+49535048 None:intergenic
GGTGGTTAAGCTTGGCGCCA+TGG 0.539230 8_4:+49535269 None:intergenic
GTGGACATTTGCATGGAAAG+TGG 0.540244 8_4:-49534805 Msa1330400:CDS
GCCTTTGAAATGTTTCCTCA+CGG 0.541118 8_4:+49533260 None:intergenic
ATATATGTTAGCGATTCTGT+TGG 0.541338 8_4:-49532678 Msa1330400:CDS
ATTTAGGGGTTTATTAAAGG+AGG 0.543379 8_4:-49534320 Msa1330400:CDS
TGGTAATGCTCCATGTCCCT+TGG 0.545376 8_4:-49531590 Msa1330400:CDS
GGTACAGAAACCATTTCACT+TGG 0.545490 8_4:-49533189 Msa1330400:CDS
TACCGTTTGGATCCCCAGCT+GGG 0.547039 8_4:+49532850 None:intergenic
TTCAGAGCTTGTCTTCAACC+AGG 0.549536 8_4:-49534844 Msa1330400:CDS
AGCCGACACATAGTTTCCAT+TGG 0.550893 8_4:-49535042 Msa1330400:CDS
GATTTAAAGGAGGAATTTAG+GGG 0.551825 8_4:-49534334 Msa1330400:CDS
TACCTTAAGGTGGACCCTCA+AGG 0.552311 8_4:-49534595 Msa1330400:CDS
GTCATGCACCTCTCAGCCCC+CGG 0.552510 8_4:+49534202 None:intergenic
TTAAGGGTTTAGTAGAAGGT+GGG 0.552737 8_4:-49534558 Msa1330400:CDS
ACCAGAGATTGCACGAGAAG+CGG 0.555134 8_4:+49532707 None:intergenic
AAAGACATTGAATGGAGCAA+AGG 0.557425 8_4:-49531975 Msa1330400:CDS
AGCATGTTAACCAATCCGAT+TGG 0.559198 8_4:+49531774 None:intergenic
AACGGTACCTATTGGTTGCA+AGG 0.559469 8_4:-49532834 Msa1330400:CDS
GCCGACGAAGCAACCAGCAA+CGG 0.560269 8_4:+49535086 None:intergenic
TCTTGAGTAACTTGAAGTTG+TGG 0.560897 8_4:+49532652 None:intergenic
GTTCCGGCGAAATTGTCACC+GGG 0.562748 8_4:-49534220 Msa1330400:CDS
TTGTAATCATTGATGATGGT+TGG 0.565983 8_4:-49534522 Msa1330400:CDS
GACCCAGCTGGGGATCCAAA+CGG 0.566099 8_4:-49532852 Msa1330400:CDS
GATTCCGTTGAGGTGGCCAA+TGG 0.571489 8_4:+49535026 None:intergenic
TTGGGTCTATTCAATTGCCA+AGG 0.572201 8_4:-49532077 Msa1330400:CDS
TATTCAGATTTAAACTATGG+TGG 0.572892 8_4:-49534990 Msa1330400:CDS
GCCTATAACAGCTTATGGAT+GGG 0.572937 8_4:-49532792 Msa1330400:CDS
AGGAAACATTTCAAAGGCAA+TGG 0.572988 8_4:-49533255 Msa1330400:CDS
GGACTTGAGTGAGGATTGGG+TGG 0.573160 8_4:+49535169 None:intergenic
GACCCTCAAGGAGTGAAAGA+AGG 0.577697 8_4:-49534583 Msa1330400:CDS
GTTTCCATTGGCCACCTCAA+CGG 0.578401 8_4:-49535030 Msa1330400:CDS
AATGACAGTTTCTCCTGTGA+TGG 0.579467 8_4:-49531826 Msa1330400:CDS
TCAATGATTACAAAACTTGG+AGG 0.580200 8_4:+49534532 None:intergenic
TGTTTGATGGGACTTGAGTG+AGG 0.584642 8_4:+49535160 None:intergenic
ATTTGATTATGATGATAGCA+TGG 0.586434 8_4:-49531610 Msa1330400:CDS
TAACAACGTGGACATTTGCA+TGG 0.587528 8_4:-49534812 Msa1330400:CDS
TGAAGGGATGCCGGAGTCGG+TGG 0.587896 8_4:-49534245 Msa1330400:CDS
CTGAAAGAACCTTCGATGAG+TGG 0.589033 8_4:+49534862 None:intergenic
TTGGTTAACATGCTCAACTC+CGG 0.595231 8_4:-49531765 Msa1330400:CDS
GTTTGTGAGGGATTTAAAGG+AGG 0.595260 8_4:-49534344 Msa1330400:CDS
GCTTGCAAAAGCGTACTACA+AGG 0.596101 8_4:-49533295 Msa1330400:CDS
TTGGTGCACGGACCCAGCTG+GGG 0.596662 8_4:-49532862 Msa1330400:CDS
TTCGTCGGCTTCAATGCCGA+CGG 0.596754 8_4:-49535072 Msa1330400:CDS
GTGCATGACGGATTTGGCGG+TGG 0.598460 8_4:-49534188 Msa1330400:CDS
TGTTGAAGGGATGCCGGAGT+CGG 0.599281 8_4:-49534248 Msa1330400:CDS
ATTGAGAACCTTGCAGAACA+AGG 0.602231 8_4:+49531567 None:intergenic
CTGGTGAACAAATGTTGGGA+AGG 0.602925 8_4:-49534429 Msa1330400:CDS
GGATTGGGTGGTTATTGGCG+AGG 0.609307 8_4:+49535181 None:intergenic
TGGACATTTGCATGGAAAGT+GGG 0.609974 8_4:-49534804 Msa1330400:CDS
CTGGTGAGAATTGGGGTGAG+AGG 0.613729 8_4:-49531702 Msa1330400:CDS
GGTCTATTCAATTGCCAAGG+AGG 0.616757 8_4:-49532074 Msa1330400:CDS
TATTCAATTGCCAAGGAGGA+GGG 0.618004 8_4:-49532070 Msa1330400:CDS
GAGGTGCATGACGGATTTGG+CGG 0.618063 8_4:-49534191 Msa1330400:CDS
TCCGGCGAAATTGTCACCGG+GGG 0.618100 8_4:-49534218 Msa1330400:CDS
TCCGTGAGGAAACATTTCAA+AGG 0.621108 8_4:-49533261 Msa1330400:CDS
GTTAACATGCTCAACTCCGG+AGG 0.626212 8_4:-49531762 Msa1330400:CDS
AAGGTTGTTAGAGACCACCT+TGG 0.626675 8_4:-49534694 Msa1330400:CDS
GGATTAGACCTAATGTTGAA+GGG 0.633952 8_4:-49534261 Msa1330400:CDS
TGGATTGGTGAAGCCAGAAG+AGG 0.637487 8_4:-49534143 Msa1330400:CDS
GTGAAATGGTTTCTGTACCA+AGG 0.638102 8_4:+49533193 None:intergenic
AGTGGTAAAAGAAGAACGTA+GGG 0.639687 8_4:+49534880 None:intergenic
GGTTCTAGAGATGCTGTCAG+AGG 0.645061 8_4:-49533337 Msa1330400:CDS
TCAATTGCCAAGGAGGAGGG+TGG 0.646161 8_4:-49532067 Msa1330400:CDS
AACCTTGCAGAACAAGGCCA+AGG 0.647712 8_4:+49531573 None:intergenic
ACCTTGCAGAACAAGGCCAA+GGG 0.647834 8_4:+49531574 None:intergenic
GGTTGATTCAACAACACGTG+TGG 0.655311 8_4:+49534780 None:intergenic
ATATAGTTGATAAATTTGGA+TGG 0.656069 8_4:-49534636 Msa1330400:CDS
ACTCACTGGACAGGAACCAA+AGG 0.659950 8_4:-49534964 Msa1330400:CDS
TAAATTTGGATGGTGTACAT+GGG 0.660395 8_4:-49534626 Msa1330400:CDS
TGAAGCCAGAAGAGGCATGT+CGG 0.661984 8_4:-49534135 Msa1330400:CDS
GAGTGGTAAAAGAAGAACGT+AGG 0.662123 8_4:+49534879 None:intergenic
GACGAAGCAACCAGCAACGG+TGG 0.666404 8_4:+49535089 None:intergenic
TATTAAAGGAGGTTTATGTG+TGG 0.666878 8_4:-49534309 Msa1330400:CDS
TGAATCTGATTCCGTTGAGG+TGG 0.668028 8_4:+49535019 None:intergenic
TTCCGGCGAAATTGTCACCG+GGG 0.679841 8_4:-49534219 Msa1330400:CDS
CACAGAGTGCGAAAACTCAG+AGG 0.690041 8_4:+49532016 None:intergenic
TGGTGAATCTGATTCCGTTG+AGG 0.696113 8_4:+49535016 None:intergenic
GAAGTTTGAATGTTCCAAGG+TGG 0.704690 8_4:+49534680 None:intergenic
GGCCAATGGAAACTATGTGT+CGG 0.724946 8_4:+49535040 None:intergenic
ATGCTGTCAGAGGAATATGG+TGG 0.725576 8_4:-49533327 Msa1330400:CDS
TTGGTTGCAAGGATGTCACA+TGG 0.743481 8_4:-49532823 Msa1330400:CDS
AGGCACTAACTGAATCCGTG+AGG 0.754937 8_4:-49533275 Msa1330400:CDS
AGGACAAAACAATAACAACG+TGG 0.807452 8_4:-49534824 Msa1330400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTAAAATTTAATATA+AGG - chr8_4:49532903-49532922 Msa1330400:intron 0.0%
!! TGAAGAAAATAAAAAATTTA+AGG - chr8_4:49532420-49532439 Msa1330400:intron 10.0%
!! AAAAATATATGTTATGATTT+AGG + chr8_4:49532805-49532824 None:intergenic 10.0%
!!! AAATCATAACATATATTTTT+TGG - chr8_4:49532805-49532824 Msa1330400:CDS 10.0%
!! AAATTTAATATATAAGGATT+AGG - chr8_4:49532939-49532958 Msa1330400:intron 10.0%
!! AAATTTAATTGGTATATATT+TGG + chr8_4:49533024-49533043 None:intergenic 10.0%
!! CATATGCAAAAATATAATTT+AGG - chr8_4:49532866-49532885 Msa1330400:CDS 15.0%
!! CATCACATAAAAAATTTAAT+TGG + chr8_4:49533035-49533054 None:intergenic 15.0%
!!! ATGAAAGTATTTTTTTATCT+GGG - chr8_4:49533074-49533093 Msa1330400:intron 15.0%
!! TAAATTTAACATATACAAGT+TGG - chr8_4:49533369-49533388 Msa1330400:intron 15.0%
!!! TTTCTAGTATTAAAAAATCA+GGG + chr8_4:49533398-49533417 None:intergenic 15.0%
!!! ATTTCTAGTATTAAAAAATC+AGG + chr8_4:49533399-49533418 None:intergenic 15.0%
!!! AATGTATAAACATGTTTTGA+AGG + chr8_4:49532059-49532078 None:intergenic 20.0%
!!! ATATAGTTGATAAATTTGGA+TGG - chr8_4:49532179-49532198 Msa1330400:intron 20.0%
!!! TTTTGCATATGTTATGATAT+AGG + chr8_4:49532857-49532876 None:intergenic 20.0%
!! ATGCAAAAATATAATTTAGG+CGG - chr8_4:49532869-49532888 Msa1330400:CDS 20.0%
!!! GATGAAAGTATTTTTTTATC+TGG - chr8_4:49533073-49533092 Msa1330400:intron 20.0%
!! AAAAAATACAAACTTACTGT+TGG + chr8_4:49533316-49533335 None:intergenic 20.0%
!!! TGTATTTTTTTAGCAATTAG+AGG - chr8_4:49533326-49533345 Msa1330400:CDS 20.0%
!!! GTATTTTTTTAGCAATTAGA+GGG - chr8_4:49533327-49533346 Msa1330400:CDS 20.0%
!!! AAAAATAGAGTATTAACTTC+TGG + chr8_4:49533445-49533464 None:intergenic 20.0%
!!! TATCATAAAATGATTTTTGC+AGG - chr8_4:49533921-49533940 Msa1330400:intron 20.0%
!!! AAATTTTATACAACCAGATT+GGG - chr8_4:49534046-49534065 Msa1330400:intron 20.0%
!! AATTTGAAGGATTGAATTAA+CGG + chr8_4:49534336-49534355 None:intergenic 20.0%
!!! TTGTTATTTCGTAAATTTGA+AGG + chr8_4:49534349-49534368 None:intergenic 20.0%
!! ATCAATAAAAGAAATGCATA+TGG + chr8_4:49534423-49534442 None:intergenic 20.0%
!!! TTACTATAGTGATATTTTCA+TGG - chr8_4:49534454-49534473 Msa1330400:CDS 20.0%
!!! CAATTTTCATATTGTTACTT+CGG - chr8_4:49534649-49534668 Msa1330400:CDS 20.0%
!!! GCAAATTGAATTGAATTTTT+CGG + chr8_4:49535020-49535039 None:intergenic 20.0%
!!! GGAAAGATTTGTTTCTTTTA+CGG + chr8_4:49531570-49531589 None:intergenic 25.0%
!!! TGTTGAGTTTTCTAGTTTTA+TGG + chr8_4:49531612-49531631 None:intergenic 25.0%
! TAGTTTAAATCTGAATATGC+TGG + chr8_4:49531822-49531841 None:intergenic 25.0%
! GCATATTCAGATTTAAACTA+TGG - chr8_4:49531822-49531841 Msa1330400:CDS 25.0%
! TATTCAGATTTAAACTATGG+TGG - chr8_4:49531825-49531844 Msa1330400:CDS 25.0%
! GCTTCGTTCATTAAAATATA+AGG + chr8_4:49532097-49532116 None:intergenic 25.0%
! CCAAATTTATCAACTATATC+AGG + chr8_4:49532178-49532197 None:intergenic 25.0%
!!! CCTGATATAGTTGATAAATT+TGG - chr8_4:49532175-49532194 Msa1330400:intron 25.0%
! TCATCAATGATTACAAAACT+TGG + chr8_4:49532289-49532308 None:intergenic 25.0%
!!! AGTTTTGTAATCATTGATGA+TGG - chr8_4:49532289-49532308 Msa1330400:intron 25.0%
!!! GATGATGAAGATTTTTTGAA+CGG - chr8_4:49532331-49532350 Msa1330400:intron 25.0%
! TATGATGAATCTTTAGGTAT+TGG - chr8_4:49532445-49532464 Msa1330400:intron 25.0%
! GTTATGATTTAGGCAAAATA+TGG + chr8_4:49532795-49532814 None:intergenic 25.0%
! AATATATAAGGATTAGGACT+AGG - chr8_4:49532945-49532964 Msa1330400:intron 25.0%
! GATGTAAATTATTCTTGACA+AGG - chr8_4:49533051-49533070 Msa1330400:intron 25.0%
!! TTAACCGATTAAAAGTTGAT+TGG - chr8_4:49533218-49533237 Msa1330400:CDS 25.0%
! AATTTAGAAAGTTGCTCTTT+AGG + chr8_4:49533355-49533374 None:intergenic 25.0%
!! GAAATTTTATACAACCAGAT+TGG - chr8_4:49534045-49534064 Msa1330400:intron 25.0%
!!! CATTTCTTTTATTGATTCGA+TGG - chr8_4:49534427-49534446 Msa1330400:CDS 25.0%
! TACATGTTTCAAAGATTAAG+AGG + chr8_4:49534605-49534624 None:intergenic 25.0%
! ATTTGATTATGATGATAGCA+TGG - chr8_4:49535205-49535224 Msa1330400:CDS 25.0%
!! AAGATTTGTTTCTTTTACGG+TGG + chr8_4:49531567-49531586 None:intergenic 30.0%
!!! GAGTTTTCTAGTTTTATGGT+GGG + chr8_4:49531608-49531627 None:intergenic 30.0%
!!! TGAGTTTTCTAGTTTTATGG+TGG + chr8_4:49531609-49531628 None:intergenic 30.0%
! GAAGAATTTTCATGTTTGTG+AGG + chr8_4:49531698-49531717 None:intergenic 30.0%
TTTAATGAACGAAGCGATTA+AGG - chr8_4:49532102-49532121 Msa1330400:intron 30.0%
ATAAATTTGGATGGTGTACA+TGG - chr8_4:49532188-49532207 Msa1330400:intron 30.0%
TAAATTTGGATGGTGTACAT+GGG - chr8_4:49532189-49532208 Msa1330400:intron 30.0%
TCAATGATTACAAAACTTGG+AGG + chr8_4:49532286-49532305 None:intergenic 30.0%
!! TTGTAATCATTGATGATGGT+TGG - chr8_4:49532293-49532312 Msa1330400:intron 30.0%
AGTTTGAATTGTTCTATACC+TGG - chr8_4:49532367-49532386 Msa1330400:intron 30.0%
! AAGGAGTATGATGAATCTTT+AGG - chr8_4:49532439-49532458 Msa1330400:intron 30.0%
!! ATGAATCTTTAGGTATTGGT+GGG - chr8_4:49532449-49532468 Msa1330400:intron 30.0%
GGATTTAAAGGAGGAATTTA+GGG - chr8_4:49532480-49532499 Msa1330400:intron 30.0%
GATTTAAAGGAGGAATTTAG+GGG - chr8_4:49532481-49532500 Msa1330400:intron 30.0%
GGAATTTAGGGGTTTATTAA+AGG - chr8_4:49532492-49532511 Msa1330400:intron 30.0%
ATTTAGGGGTTTATTAAAGG+AGG - chr8_4:49532495-49532514 Msa1330400:intron 30.0%
TATTAAAGGAGGTTTATGTG+TGG - chr8_4:49532506-49532525 Msa1330400:intron 30.0%
! CATTCTCATTTGAAATCTGT+TGG - chr8_4:49532718-49532737 Msa1330400:CDS 30.0%
! TTGAAATCTGTTGGTATTGA+TGG - chr8_4:49532727-49532746 Msa1330400:CDS 30.0%
! CCTTCCAATCAACTTTTAAT+CGG + chr8_4:49533225-49533244 None:intergenic 30.0%
!! AACTACCGTTAGCTTTAAAA+CGG + chr8_4:49533278-49533297 None:intergenic 30.0%
!!! CTATTTTTGTTGCATATGAC+AGG - chr8_4:49533457-49533476 Msa1330400:intron 30.0%
! GTTACAAAGGTTAAGGTTTT+TGG + chr8_4:49533727-49533746 None:intergenic 30.0%
! ATATCTTCCATTAGAAGTGT+GGG + chr8_4:49533751-49533770 None:intergenic 30.0%
CACAAACACATATCAAACAT+CGG + chr8_4:49533776-49533795 None:intergenic 30.0%
! TTTTTGCAGGTGATGATTTT+TGG - chr8_4:49533934-49533953 Msa1330400:intron 30.0%
ACAGAATCGCTAACATATAT+CGG + chr8_4:49534137-49534156 None:intergenic 30.0%
ATATATGTTAGCGATTCTGT+TGG - chr8_4:49534137-49534156 Msa1330400:CDS 30.0%
ACAAATAAAGAGTCTCTTGT+TGG + chr8_4:49534239-49534258 None:intergenic 30.0%
!! TTGTTTTGCCATCATGTAAA+GGG + chr8_4:49534265-49534284 None:intergenic 30.0%
!! ATTGTTTTGCCATCATGTAA+AGG + chr8_4:49534266-49534285 None:intergenic 30.0%
GCAAAACAATGCTCAAAATT+TGG - chr8_4:49534276-49534295 Msa1330400:CDS 30.0%
AAGGATTGAATTAACGGAAT+AGG + chr8_4:49534330-49534349 None:intergenic 30.0%
!! AAGAGACTAAATTGATTCGA+TGG - chr8_4:49534508-49534527 Msa1330400:CDS 30.0%
CTTAAGTCCTCAAAATTCTA+AGG + chr8_4:49534570-49534589 None:intergenic 30.0%
!! ATAACAGTATAGTGGAGTTT+TGG - chr8_4:49534719-49534738 Msa1330400:CDS 30.0%
!! TAACAGTATAGTGGAGTTTT+GGG - chr8_4:49534720-49534739 Msa1330400:CDS 30.0%
!! TTTTGTTTCTTCTAGTCACA+GGG + chr8_4:49534776-49534795 None:intergenic 30.0%
AAAAACCCAATTTGCATGAA+AGG - chr8_4:49534864-49534883 Msa1330400:CDS 30.0%
! TCAATTCAATTTGCTCCAAT+CGG - chr8_4:49535026-49535045 Msa1330400:CDS 30.0%
GTTTGATGAAGAGAAAAATC+TGG - chr8_4:49535094-49535113 Msa1330400:CDS 30.0%
AGAAAAATCTGGTGAGAATT+GGG - chr8_4:49535105-49535124 Msa1330400:CDS 30.0%
CCATCAATCATACAACTTAT+CGG + chr8_4:49535173-49535192 None:intergenic 30.0%
!!! TTCTAGTTTTATGGTGGGAT+GGG + chr8_4:49531603-49531622 None:intergenic 35.0%
!!! TTTCTAGTTTTATGGTGGGA+TGG + chr8_4:49531604-49531623 None:intergenic 35.0%
GAGTGATGGTTATGTTTGAT+GGG + chr8_4:49531670-49531689 None:intergenic 35.0%
! GAATTTTCATGTTTGTGAGG+TGG + chr8_4:49531695-49531714 None:intergenic 35.0%
! GTTTTCTATGTCATTGCCTT+TGG + chr8_4:49531870-49531889 None:intergenic 35.0%
AGTGGTAAAAGAAGAACGTA+GGG + chr8_4:49531938-49531957 None:intergenic 35.0%
!! ACGTTGTTATTGTTTTGTCC+TGG + chr8_4:49531992-49532011 None:intergenic 35.0%
AGGACAAAACAATAACAACG+TGG - chr8_4:49531991-49532010 Msa1330400:CDS 35.0%
CAAGAAGTTTGAATGTTCCA+AGG + chr8_4:49532141-49532160 None:intergenic 35.0%
! ATGGGATGCATTTTACCTTA+AGG - chr8_4:49532207-49532226 Msa1330400:intron 35.0%
TTAAGGGTTTAGTAGAAGGT+GGG - chr8_4:49532257-49532276 Msa1330400:intron 35.0%
!!! GATGAAGATTTTTTGAACGG+TGG - chr8_4:49532334-49532353 Msa1330400:intron 35.0%
TATACCTGGTGAACAAATGT+TGG - chr8_4:49532381-49532400 Msa1330400:intron 35.0%
ATACCTGGTGAACAAATGTT+GGG - chr8_4:49532382-49532401 Msa1330400:intron 35.0%
!! GATGAATCTTTAGGTATTGG+TGG - chr8_4:49532448-49532467 Msa1330400:intron 35.0%
GGGATTTAAAGGAGGAATTT+AGG - chr8_4:49532479-49532498 Msa1330400:intron 35.0%
GGATTAGACCTAATGTTGAA+GGG - chr8_4:49532554-49532573 Msa1330400:intron 35.0%
!! AAGATAATGGAGATTGGAGT+TGG - chr8_4:49532652-49532671 Msa1330400:CDS 35.0%
ATCTCATGCACTTTGAATTG+AGG - chr8_4:49533147-49533166 Msa1330400:intron 35.0%
TGAATTGAGGAAAATGCATC+CGG - chr8_4:49533160-49533179 Msa1330400:intron 35.0%
TCTAACAGTATTAACACCAC+CGG + chr8_4:49533182-49533201 None:intergenic 35.0%
! CCGATTAAAAGTTGATTGGA+AGG - chr8_4:49533222-49533241 Msa1330400:CDS 35.0%
!!! AACCACCGTTTTAAAGCTAA+CGG - chr8_4:49533270-49533289 Msa1330400:CDS 35.0%
AGGAAACATTTCAAAGGCAA+TGG - chr8_4:49533560-49533579 Msa1330400:intron 35.0%
!! TTTACCATATCGACTTCAAG+TGG + chr8_4:49533690-49533709 None:intergenic 35.0%
CATATCTTCCATTAGAAGTG+TGG + chr8_4:49533752-49533771 None:intergenic 35.0%
!! TATGAAGTACTGACATGACA+CGG + chr8_4:49533864-49533883 None:intergenic 35.0%
ATTGTGCCTATAACAGCTTA+TGG - chr8_4:49534018-49534037 Msa1330400:intron 35.0%
TCTTGAGTAACTTGAAGTTG+TGG + chr8_4:49534166-49534185 None:intergenic 35.0%
TTTGTAGACCCTTTACATGA+TGG - chr8_4:49534254-49534273 Msa1330400:CDS 35.0%
! TCTCGATCCTTAGAATTTTG+AGG - chr8_4:49534560-49534579 Msa1330400:CDS 35.0%
TTGAAAAGACACCTAATCTG+AGG + chr8_4:49534632-49534651 None:intergenic 35.0%
! TGCTGCTTATAACAGTATAG+TGG - chr8_4:49534711-49534730 Msa1330400:CDS 35.0%
!! CTTTTGTTTCTTCTAGTCAC+AGG + chr8_4:49534777-49534796 None:intergenic 35.0%
CAAGTCCTAAAGACATTGAA+TGG - chr8_4:49534832-49534851 Msa1330400:CDS 35.0%
TTGCTCCATTCAATGTCTTT+AGG + chr8_4:49534840-49534859 None:intergenic 35.0%
AAAGACATTGAATGGAGCAA+AGG - chr8_4:49534840-49534859 Msa1330400:CDS 35.0%
AAGACATTGAATGGAGCAAA+GGG - chr8_4:49534841-49534860 Msa1330400:CDS 35.0%
CAACACCTTTCATGCAAATT+GGG + chr8_4:49534872-49534891 None:intergenic 35.0%
TCAACACCTTTCATGCAAAT+TGG + chr8_4:49534873-49534892 None:intergenic 35.0%
GTCATTAGCTCGAAACTAAA+AGG + chr8_4:49534975-49534994 None:intergenic 35.0%
CAATGACATAATTGAACCTC+CGG + chr8_4:49535072-49535091 None:intergenic 35.0%
GAGAAAAATCTGGTGAGAAT+TGG - chr8_4:49535104-49535123 Msa1330400:CDS 35.0%
GAAAAATCTGGTGAGAATTG+GGG - chr8_4:49535106-49535125 Msa1330400:CDS 35.0%
CCGATAAGTTGTATGATTGA+TGG - chr8_4:49535170-49535189 Msa1330400:CDS 35.0%
! TCTTTTACGGTGGTTAAGCT+TGG + chr8_4:49531557-49531576 None:intergenic 40.0%
!! TTTTATGGTGGGATGGGAAT+TGG + chr8_4:49531597-49531616 None:intergenic 40.0%
GGAGTGATGGTTATGTTTGA+TGG + chr8_4:49531671-49531690 None:intergenic 40.0%
! TTTTCATGTTTGTGAGGTGG+TGG + chr8_4:49531692-49531711 None:intergenic 40.0%
AACGTAGGGACGTTGTTTAA+CGG + chr8_4:49531924-49531943 None:intergenic 40.0%
GAGTGGTAAAAGAAGAACGT+AGG + chr8_4:49531939-49531958 None:intergenic 40.0%
! CTTCTTTTACCACTCATCGA+AGG - chr8_4:49531944-49531963 Msa1330400:CDS 40.0%
TAACAACGTGGACATTTGCA+TGG - chr8_4:49532003-49532022 Msa1330400:CDS 40.0%
TGGACATTTGCATGGAAAGT+GGG - chr8_4:49532011-49532030 Msa1330400:CDS 40.0%
GAAGTTTGAATGTTCCAAGG+TGG + chr8_4:49532138-49532157 None:intergenic 40.0%
! GGATGCATTTTACCTTAAGG+TGG - chr8_4:49532210-49532229 Msa1330400:intron 40.0%
!! AGGAGTGAAAGAAGGTGTTA+AGG - chr8_4:49532240-49532259 Msa1330400:intron 40.0%
!! GGAGTGAAAGAAGGTGTTAA+GGG - chr8_4:49532241-49532260 Msa1330400:intron 40.0%
GGTGTTAAGGGTTTAGTAGA+AGG - chr8_4:49532253-49532272 Msa1330400:intron 40.0%
GTTAAGGGTTTAGTAGAAGG+TGG - chr8_4:49532256-49532275 Msa1330400:intron 40.0%
TGGGTTTGTGAGGGATTTAA+AGG - chr8_4:49532468-49532487 Msa1330400:intron 40.0%
GTTTGTGAGGGATTTAAAGG+AGG - chr8_4:49532471-49532490 Msa1330400:intron 40.0%
!! TATGTGTGGCATGCTTTTTG+TGG - chr8_4:49532520-49532539 Msa1330400:intron 40.0%
!! ATGTGTGGCATGCTTTTTGT+GGG - chr8_4:49532521-49532540 Msa1330400:intron 40.0%
!! GCATGCTTTTTGTGGGTATT+GGG - chr8_4:49532528-49532547 Msa1330400:intron 40.0%
!! CATGCTTTTTGTGGGTATTG+GGG - chr8_4:49532529-49532548 Msa1330400:intron 40.0%
GGGATTAGACCTAATGTTGA+AGG - chr8_4:49532553-49532572 Msa1330400:intron 40.0%
!! GTGGTGAAGATAATGGAGAT+TGG - chr8_4:49532646-49532665 Msa1330400:intron 40.0%
AATGGAGATTGGAGTTGGAT+TGG - chr8_4:49532657-49532676 Msa1330400:CDS 40.0%
AGGACTAGGCACTTGATTTA+AGG - chr8_4:49532959-49532978 Msa1330400:intron 40.0%
TGCATGAGATTGAGAGCAAA+TGG + chr8_4:49533137-49533156 None:intergenic 40.0%
! GGTGGTGTTAATACTGTTAG+AGG - chr8_4:49533181-49533200 Msa1330400:CDS 40.0%
!! TACCGTTAGCTTTAAAACGG+TGG + chr8_4:49533275-49533294 None:intergenic 40.0%
! AACTTACTGTTGGTTGAGTG+CGG + chr8_4:49533306-49533325 None:intergenic 40.0%
TCCGTGAGGAAACATTTCAA+AGG - chr8_4:49533554-49533573 Msa1330400:intron 40.0%
!! GCCTTTGAAATGTTTCCTCA+CGG + chr8_4:49533558-49533577 None:intergenic 40.0%
TGCAACGATTTCATGTTCCT+TGG - chr8_4:49533605-49533624 Msa1330400:intron 40.0%
GTGAAATGGTTTCTGTACCA+AGG + chr8_4:49533625-49533644 None:intergenic 40.0%
GGTACAGAAACCATTTCACT+TGG - chr8_4:49533626-49533645 Msa1330400:intron 40.0%
ACAACCACTTGAAGTCGATA+TGG - chr8_4:49533683-49533702 Msa1330400:intron 40.0%
! TGTGGGTGTTACAAAGGTTA+AGG + chr8_4:49533734-49533753 None:intergenic 40.0%
! TAGAAGTGTGGGTGTTACAA+AGG + chr8_4:49533740-49533759 None:intergenic 40.0%
TGTAACACCCACACTTCTAA+TGG - chr8_4:49533741-49533760 Msa1330400:intron 40.0%
!!! AGGTGATGATTTTTGGTGCA+CGG - chr8_4:49533941-49533960 Msa1330400:intron 40.0%
TGCCTATAACAGCTTATGGA+TGG - chr8_4:49534022-49534041 Msa1330400:intron 40.0%
GCCTATAACAGCTTATGGAT+GGG - chr8_4:49534023-49534042 Msa1330400:intron 40.0%
TCCCATCCATAAGCTGTTAT+AGG + chr8_4:49534027-49534046 None:intergenic 40.0%
GATTGAAACATGTCCCAATC+TGG + chr8_4:49534062-49534081 None:intergenic 40.0%
! CTTCAAGTTACTCAAGAAGC+TGG - chr8_4:49534169-49534188 Msa1330400:CDS 40.0%
ACATGTACACTCCTCAGATT+AGG - chr8_4:49534618-49534637 Msa1330400:CDS 40.0%
TTGGGTCTATTCAATTGCCA+AGG - chr8_4:49534738-49534757 Msa1330400:CDS 40.0%
TATTCAATTGCCAAGGAGGA+GGG - chr8_4:49534745-49534764 Msa1330400:CDS 40.0%
AATGACAGTTTCTCCTGTGA+TGG - chr8_4:49534989-49535008 Msa1330400:CDS 40.0%
!! TTTTTCGGTATGACCATCAC+AGG + chr8_4:49535005-49535024 None:intergenic 40.0%
! TCAATTTGCTCCAATCGGAT+TGG - chr8_4:49535031-49535050 Msa1330400:CDS 40.0%
AGCATGTTAACCAATCCGAT+TGG + chr8_4:49535044-49535063 None:intergenic 40.0%
TTGGTTAACATGCTCAACTC+CGG - chr8_4:49535050-49535069 Msa1330400:CDS 40.0%
CGGAGGTTCAATTATGTCAT+TGG - chr8_4:49535070-49535089 Msa1330400:CDS 40.0%
!! CATACAACTTATCGGCTTCT+CGG + chr8_4:49535165-49535184 None:intergenic 40.0%
ATTGAGAACCTTGCAGAACA+AGG + chr8_4:49535251-49535270 None:intergenic 40.0%
TTGTTCTGCAAGGTTCTCAA+TGG - chr8_4:49535250-49535269 Msa1330400:CDS 40.0%
AGTGAGGATTGGGTGGTTAT+TGG + chr8_4:49531642-49531661 None:intergenic 45.0%
ATGGGACTTGAGTGAGGATT+GGG + chr8_4:49531652-49531671 None:intergenic 45.0%
TGTTTGATGGGACTTGAGTG+AGG + chr8_4:49531658-49531677 None:intergenic 45.0%
AGCCGACACATAGTTTCCAT+TGG - chr8_4:49531773-49531792 Msa1330400:CDS 45.0%
GGCCAATGGAAACTATGTGT+CGG + chr8_4:49531778-49531797 None:intergenic 45.0%
TGAATCTGATTCCGTTGAGG+TGG + chr8_4:49531799-49531818 None:intergenic 45.0%
TGGTGAATCTGATTCCGTTG+AGG + chr8_4:49531802-49531821 None:intergenic 45.0%
CTGAAAGAACCTTCGATGAG+TGG + chr8_4:49531956-49531975 None:intergenic 45.0%
TTCAGAGCTTGTCTTCAACC+AGG - chr8_4:49531971-49531990 Msa1330400:CDS 45.0%
GTGGACATTTGCATGGAAAG+TGG - chr8_4:49532010-49532029 Msa1330400:CDS 45.0%
! GGTTGATTCAACAACACGTG+TGG + chr8_4:49532038-49532057 None:intergenic 45.0%
AAGGTTGTTAGAGACCACCT+TGG - chr8_4:49532121-49532140 Msa1330400:intron 45.0%
CACCTTCTTTCACTCCTTGA+GGG + chr8_4:49532237-49532256 None:intergenic 45.0%
ACACCTTCTTTCACTCCTTG+AGG + chr8_4:49532238-49532257 None:intergenic 45.0%
CTTCCCAACATTTGTTCACC+AGG + chr8_4:49532388-49532407 None:intergenic 45.0%
CTGGTGAACAAATGTTGGGA+AGG - chr8_4:49532386-49532405 Msa1330400:intron 45.0%
!! TAGGTATTGGTGGGTTTGTG+AGG - chr8_4:49532458-49532477 Msa1330400:intron 45.0%
!! AGGTATTGGTGGGTTTGTGA+GGG - chr8_4:49532459-49532478 Msa1330400:intron 45.0%
!! GGCATGCTTTTTGTGGGTAT+TGG - chr8_4:49532527-49532546 Msa1330400:intron 45.0%
!!! CTTTTTGTGGGTATTGGGGT+GGG - chr8_4:49532533-49532552 Msa1330400:intron 45.0%
ACCTAATGTTGAAGGGATGC+CGG - chr8_4:49532561-49532580 Msa1330400:intron 45.0%
TTTGGCGGTGGTGAAGATAA+TGG - chr8_4:49532639-49532658 Msa1330400:intron 45.0%
ATTGAGGAAAATGCATCCGG+TGG - chr8_4:49533163-49533182 Msa1330400:intron 45.0%
GAGATGCTGTCAGAGGAATA+TGG - chr8_4:49533485-49533504 Msa1330400:intron 45.0%
ATGCTGTCAGAGGAATATGG+TGG - chr8_4:49533488-49533507 Msa1330400:intron 45.0%
! GCTTGCAAAAGCGTACTACA+AGG - chr8_4:49533520-49533539 Msa1330400:intron 45.0%
ATCGTTGCACTGTTGCATAC+TGG + chr8_4:49533594-49533613 None:intergenic 45.0%
ACCATTTCACTTGGACGAGT+TGG - chr8_4:49533635-49533654 Msa1330400:intron 45.0%
ACCAACTCGTCCAAGTGAAA+TGG + chr8_4:49533639-49533658 None:intergenic 45.0%
TACTGACATGACACGGACAT+GGG + chr8_4:49533857-49533876 None:intergenic 45.0%
! TGCAACCAATAGGTACCGTT+TGG + chr8_4:49533981-49534000 None:intergenic 45.0%
! AACGGTACCTATTGGTTGCA+AGG - chr8_4:49533981-49534000 Msa1330400:intron 45.0%
GTGACATCCTTGCAACCAAT+AGG + chr8_4:49533991-49534010 None:intergenic 45.0%
TTGGTTGCAAGGATGTCACA+TGG - chr8_4:49533992-49534011 Msa1330400:intron 45.0%
!!! ACTCAAGAAGCTGGTTTTGC+CGG - chr8_4:49534178-49534197 Msa1330400:CDS 45.0%
GGTCTATTCAATTGCCAAGG+AGG - chr8_4:49534741-49534760 Msa1330400:CDS 45.0%
CTATTCAATTGCCAAGGAGG+AGG - chr8_4:49534744-49534763 Msa1330400:CDS 45.0%
TGAGAGGTCATGGAGAAATG+AGG - chr8_4:49535129-49535148 Msa1330400:CDS 45.0%
GAGAGGTCATGGAGAAATGA+GGG - chr8_4:49535130-49535149 Msa1330400:CDS 45.0%
!! TCAAAAAAATTTAATATATA+AGG - chr8_4:49532933-49532952 Msa1330400:intron 5.0%
GATGGGACTTGAGTGAGGAT+TGG + chr8_4:49531653-49531672 None:intergenic 50.0%
!! TTTGTGAGGTGGTGGAGTGA+TGG + chr8_4:49531684-49531703 None:intergenic 50.0%
TCTTCAAACACCACCGTTGC+TGG - chr8_4:49531716-49531735 Msa1330400:CDS 50.0%
!! GAAACTATGTGTCGGCTGCT+TGG + chr8_4:49531770-49531789 None:intergenic 50.0%
GTTTCCATTGGCCACCTCAA+CGG - chr8_4:49531785-49531804 Msa1330400:CDS 50.0%
! AACTATGGTGGAGCACTCAC+TGG - chr8_4:49531837-49531856 Msa1330400:CDS 50.0%
ACTCACTGGACAGGAACCAA+AGG - chr8_4:49531851-49531870 Msa1330400:CDS 50.0%
TACCTTAAGGTGGACCCTCA+AGG - chr8_4:49532220-49532239 Msa1330400:intron 50.0%
GACCCTCAAGGAGTGAAAGA+AGG - chr8_4:49532232-49532251 Msa1330400:intron 50.0%
!!! GCTTTTTGTGGGTATTGGGG+TGG - chr8_4:49532532-49532551 Msa1330400:intron 50.0%
TCCGGCATCCCTTCAACATT+AGG + chr8_4:49532565-49532584 None:intergenic 50.0%
!! TGAGAGGTGCATGACGGATT+TGG - chr8_4:49532621-49532640 Msa1330400:intron 50.0%
!! TGGATTGGTGAAGCCAGAAG+AGG - chr8_4:49532672-49532691 Msa1330400:CDS 50.0%
! TGAAGCCAGAAGAGGCATGT+CGG - chr8_4:49532680-49532699 Msa1330400:CDS 50.0%
TACAACCGACATGCCTCTTC+TGG + chr8_4:49532688-49532707 None:intergenic 50.0%
! GAGGCATGTCGGTTGTATGA+TGG - chr8_4:49532691-49532710 Msa1330400:CDS 50.0%
!! GGTTCTAGAGATGCTGTCAG+AGG - chr8_4:49533478-49533497 Msa1330400:intron 50.0%
AGGCACTAACTGAATCCGTG+AGG - chr8_4:49533540-49533559 Msa1330400:intron 50.0%
! GTACTGACATGACACGGACA+TGG + chr8_4:49533858-49533877 None:intergenic 50.0%
GGGATCCAAACGGTACCTAT+TGG - chr8_4:49533973-49533992 Msa1330400:intron 50.0%
ACCAGAGATTGCACGAGAAG+CGG + chr8_4:49534111-49534130 None:intergenic 50.0%
!!! AAGAAGCTGGTTTTGCCGGA+TGG - chr8_4:49534182-49534201 Msa1330400:CDS 50.0%
!! TGCCGGATGGATCGATTTTG+CGG - chr8_4:49534195-49534214 Msa1330400:CDS 50.0%
CACCGCAAAATCGATCCATC+CGG + chr8_4:49534200-49534219 None:intergenic 50.0%
CACAGAGTGCGAAAACTCAG+AGG + chr8_4:49534802-49534821 None:intergenic 50.0%
GTTAACATGCTCAACTCCGG+AGG - chr8_4:49535053-49535072 Msa1330400:CDS 50.0%
AGAATTGGGGTGAGAGGTCA+TGG - chr8_4:49535119-49535138 Msa1330400:CDS 50.0%
! TGGTAATGCTCCATGTCCCT+TGG - chr8_4:49535225-49535244 Msa1330400:CDS 50.0%
ACCTTGCAGAACAAGGCCAA+GGG + chr8_4:49535244-49535263 None:intergenic 50.0%
AACCTTGCAGAACAAGGCCA+AGG + chr8_4:49535245-49535264 None:intergenic 50.0%
GGTGGGATGGGAATTGGCAT+GGG + chr8_4:49531591-49531610 None:intergenic 55.0%
TGGTGGGATGGGAATTGGCA+TGG + chr8_4:49531592-49531611 None:intergenic 55.0%
GGATTGGGTGGTTATTGGCG+AGG + chr8_4:49531637-49531656 None:intergenic 55.0%
GGACTTGAGTGAGGATTGGG+TGG + chr8_4:49531649-49531668 None:intergenic 55.0%
! ACCGTTGCTGGTTGCTTCGT+CGG - chr8_4:49531728-49531747 Msa1330400:CDS 55.0%
!! TTCGTCGGCTTCAATGCCGA+CGG - chr8_4:49531743-49531762 Msa1330400:CDS 55.0%
GATTCCGTTGAGGTGGCCAA+TGG + chr8_4:49531792-49531811 None:intergenic 55.0%
CTCCTTGAGGGTCCACCTTA+AGG + chr8_4:49532225-49532244 None:intergenic 55.0%
TGTTGAAGGGATGCCGGAGT+CGG - chr8_4:49532567-49532586 Msa1330400:intron 55.0%
GGTTCCGGCGAAATTGTCAC+CGG - chr8_4:49532594-49532613 Msa1330400:intron 55.0%
GTTCCGGCGAAATTGTCACC+GGG - chr8_4:49532595-49532614 Msa1330400:intron 55.0%
TTCCGGCGAAATTGTCACCG+GGG - chr8_4:49532596-49532615 Msa1330400:intron 55.0%
!! GAGGTGCATGACGGATTTGG+CGG - chr8_4:49532624-49532643 Msa1330400:intron 55.0%
TACCGTTTGGATCCCCAGCT+GGG + chr8_4:49533968-49533987 None:intergenic 55.0%
GCTTCTCGTGCAATCTCTGG+TGG - chr8_4:49534110-49534129 Msa1330400:CDS 55.0%
TCAATTGCCAAGGAGGAGGG+TGG - chr8_4:49534748-49534767 Msa1330400:CDS 55.0%
CTGGTGAGAATTGGGGTGAG+AGG - chr8_4:49535113-49535132 Msa1330400:CDS 55.0%
CAGAACAAGGCCAAGGGACA+TGG + chr8_4:49535238-49535257 None:intergenic 55.0%
!! TCCCTTGGCCTTGTTCTGCA+AGG - chr8_4:49535240-49535259 Msa1330400:CDS 55.0%
GACGAAGCAACCAGCAACGG+TGG + chr8_4:49531729-49531748 None:intergenic 60.0%
GCCGACGAAGCAACCAGCAA+CGG + chr8_4:49531732-49531751 None:intergenic 60.0%
! TGGTGGAGCACTCACTGGAC+AGG - chr8_4:49531842-49531861 Msa1330400:CDS 60.0%
TCCGGCGAAATTGTCACCGG+GGG - chr8_4:49532597-49532616 Msa1330400:intron 60.0%
AATTGTCACCGGGGGCTGAG+AGG - chr8_4:49532605-49532624 Msa1330400:intron 60.0%
!! GTGCATGACGGATTTGGCGG+TGG - chr8_4:49532627-49532646 Msa1330400:intron 60.0%
!! TTTTGGTGCACGGACCCAGC+TGG - chr8_4:49533951-49533970 Msa1330400:intron 60.0%
! TTTGGTGCACGGACCCAGCT+GGG - chr8_4:49533952-49533971 Msa1330400:intron 60.0%
GACCCAGCTGGGGATCCAAA+CGG - chr8_4:49533963-49533982 Msa1330400:intron 60.0%
GTACCGTTTGGATCCCCAGC+TGG + chr8_4:49533969-49533988 None:intergenic 60.0%
GCCGCTTCTCGTGCAATCTC+TGG - chr8_4:49534107-49534126 Msa1330400:CDS 60.0%
!! GTGTCGGCTGCTTGGTCCGT+CGG + chr8_4:49531762-49531781 None:intergenic 65.0%
TGAAGGGATGCCGGAGTCGG+TGG - chr8_4:49532570-49532589 Msa1330400:intron 65.0%
GCCCCCGGTGACAATTTCGC+CGG + chr8_4:49532601-49532620 None:intergenic 65.0%
GTCATGCACCTCTCAGCCCC+CGG + chr8_4:49532616-49532635 None:intergenic 65.0%
! GGGGGCTGAGAGGTGCATGA+CGG - chr8_4:49532615-49532634 Msa1330400:intron 65.0%
TTGGTGCACGGACCCAGCTG+GGG - chr8_4:49533953-49533972 Msa1330400:intron 65.0%
AGGGATGCCGGAGTCGGTGG+TGG - chr8_4:49532573-49532592 Msa1330400:intron 70.0%
! GCCGGAGTCGGTGGTGGTTC+CGG - chr8_4:49532579-49532598 Msa1330400:intron 70.0%
!! GCCGGAACCACCACCGACTC+CGG + chr8_4:49532583-49532602 None:intergenic 70.0%
! CAGGGCACCACCCTCCTCCT+TGG + chr8_4:49534758-49534777 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49531548 49535289 49531548 ID=Msa1330400;Name=Msa1330400
chr8_4 mRNA 49531548 49535289 49531548 ID=Msa1330400-mRNA-1;Parent=Msa1330400;Name=Msa1330400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|737
chr8_4 exon 49534066 49535289 49534066 ID=Msa1330400-mRNA-1:exon:14358;Parent=Msa1330400-mRNA-1
chr8_4 exon 49533181 49533358 49533181 ID=Msa1330400-mRNA-1:exon:14357;Parent=Msa1330400-mRNA-1
chr8_4 exon 49532647 49532894 49532647 ID=Msa1330400-mRNA-1:exon:14356;Parent=Msa1330400-mRNA-1
chr8_4 exon 49531548 49532111 49531548 ID=Msa1330400-mRNA-1:exon:14355;Parent=Msa1330400-mRNA-1
chr8_4 CDS 49534066 49535289 49534066 ID=Msa1330400-mRNA-1:cds;Parent=Msa1330400-mRNA-1
chr8_4 CDS 49533181 49533358 49533181 ID=Msa1330400-mRNA-1:cds;Parent=Msa1330400-mRNA-1
chr8_4 CDS 49532647 49532894 49532647 ID=Msa1330400-mRNA-1:cds;Parent=Msa1330400-mRNA-1
chr8_4 CDS 49531548 49532111 49531548 ID=Msa1330400-mRNA-1:cds;Parent=Msa1330400-mRNA-1
Gene Sequence

>Msa1330400

ATGGCGCCAAGCTTAACCACCGTAAAAGAAACAAATCTTTCCCATGCCAATTCCCATCCCACCATAAAACTAGAAAACTCAACATTCCTCGCCAATAACCACCCAATCCTCACTCAAGTCCCATCAAACATAACCATCACTCCACCACCTCACAAACATGAAAATTCTTCTTCAAACACCACCGTTGCTGGTTGCTTCGTCGGCTTCAATGCCGACGGACCAAGCAGCCGACACATAGTTTCCATTGGCCACCTCAACGGAATCAGATTCACCAGCATATTCAGATTTAAACTATGGTGGAGCACTCACTGGACAGGAACCAAAGGCAATGACATAGAAAACGAAACTCAAATGATTATACTCGAAAACGACACCGTTAAACAACGTCCCTACGTTCTTCTTTTACCACTCATCGAAGGTTCTTTCAGAGCTTGTCTTCAACCAGGACAAAACAATAACAACGTGGACATTTGCATGGAAAGTGGGTCCACACGTGTTGTTGAATCAACCTTCAAAACATGTTTATACATTCATGCGAACTTCGATCCTTATATTTTAATGAACGAAGCGATTAAGGTTGTTAGAGACCACCTTGGAACATTCAAACTTCTTGAAGAAAAAACAATACCTGATATAGTTGATAAATTTGGATGGTGTACATGGGATGCATTTTACCTTAAGGTGGACCCTCAAGGAGTGAAAGAAGGTGTTAAGGGTTTAGTAGAAGGTGGGTGTCCTCCAAGTTTTGTAATCATTGATGATGGTTGGCAAAATTTTTGTCGTGATGATGAAGATTTTTTGAACGGTGGTGATTGTTTAAGTTTGAATTGTTCTATACCTGGTGAACAAATGTTGGGAAGGTTAATAAGTTTTGAAGAAAATAAAAAATTTAAGGAGTATGATGAATCTTTAGGTATTGGTGGGTTTGTGAGGGATTTAAAGGAGGAATTTAGGGGTTTATTAAAGGAGGTTTATGTGTGGCATGCTTTTTGTGGGTATTGGGGTGGGATTAGACCTAATGTTGAAGGGATGCCGGAGTCGGTGGTGGTTCCGGCGAAATTGTCACCGGGGGCTGAGAGGTGCATGACGGATTTGGCGGTGGTGAAGATAATGGAGATTGGAGTTGGATTGGTGAAGCCAGAAGAGGCATGTCGGTTGTATGATGGACTTCATTCTCATTTGAAATCTGTTGGTATTGATGGTGTCAAGATTGATGTCACACACGTTCTAGAGATGCTGTCAGAGGAATATGGTGGTCGAGTTGAGCTTGCAAAAGCGTACTACAAGGCACTAACTGAATCCGTGAGGAAACATTTCAAAGGCAATGGTGTCATTTCCAGTATGCAACAGTGCAACGATTTCATGTTCCTTGGTACAGAAACCATTTCACTTGGACGAGTTGGTGATGATTTTTGGTGCACGGACCCAGCTGGGGATCCAAACGGTACCTATTGGTTGCAAGGATGTCACATGGTGCATTGTGCCTATAACAGCTTATGGATGGGAAATTTTATACAACCAGATTGGGACATGTTTCAATCTCATCATGCTTGTTCTGAATTTCATGCCGCTTCTCGTGCAATCTCTGGTGGACCGATATATGTTAGCGATTCTGTTGGAAACCACAACTTCAAGTTACTCAAGAAGCTGTATAGTGGAGTTTTGGGTCTATTCAATTGCCAAGGAGGAGGGTGGTGCCCTGTGACTAGAAGAAACAAAAGTGCCTCTGAGTTTTCGCACTCTGTGACTTGTTTTGCAAGTCCTAAAGACATTGAATGGAGCAAAGGGAAAAACCCAATTTGCATGAAAGGTGTTGATGTATTTGCTGTCTACATGTTTAAAGATGAAAAATTGAAGCTGCTGAAGTGCACAGAGACTATAGAAGTTTCACTTGAGCCTTTTAGTTTCGAGCTAATGACAGTTTCTCCTGTGATGGTCATACCGAAAAATTCAATTCAATTTGCTCCAATCGGATTGGTTAACATGCTCAACTCCGGAGGTTCAATTATGTCATTGGAGTTTGATGAAGAGAAAAATCTGGTGAGAATTGGGGTGAGAGGTCATGGAGAAATGAGGGTGTTCGCATCCGAGAAGCCGATAAGTTGTATGATTGATGGAGAAGCTGTGAAATTTGATTATGATGATAGCATGGTAATGCTCCATGTCCCTTGGCCTTGTTCTGCAAGGTTCTCAATGGTTGAGTATTTATTCTGA

Protein sequence

>Msa1330400

MAPSLTTVKETNLSHANSHPTIKLENSTFLANNHPILTQVPSNITITPPPHKHENSSSNTTVAGCFVGFNADGPSSRHIVSIGHLNGIRFTSIFRFKLWWSTHWTGTKGNDIENETQMIILENDTVKQRPYVLLLPLIEGSFRACLQPGQNNNNVDICMESGSTRVVESTFKTCLYIHANFDPYILMNEAIKVVRDHLGTFKLLEEKTIPDIVDKFGWCTWDAFYLKVDPQGVKEGVKGLVEGGCPPSFVIIDDGWQNFCRDDEDFLNGGDCLSLNCSIPGEQMLGRLISFEENKKFKEYDESLGIGGFVRDLKEEFRGLLKEVYVWHAFCGYWGGIRPNVEGMPESVVVPAKLSPGAERCMTDLAVVKIMEIGVGLVKPEEACRLYDGLHSHLKSVGIDGVKIDVTHVLEMLSEEYGGRVELAKAYYKALTESVRKHFKGNGVISSMQQCNDFMFLGTETISLGRVGDDFWCTDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSHHACSEFHAASRAISGGPIYVSDSVGNHNFKLLKKLYSGVLGLFNCQGGGWCPVTRRNKSASEFSHSVTCFASPKDIEWSKGKNPICMKGVDVFAVYMFKDEKLKLLKCTETIEVSLEPFSFELMTVSPVMVIPKNSIQFAPIGLVNMLNSGGSIMSLEFDEEKNLVRIGVRGHGEMRVFASEKPISCMIDGEAVKFDYDDSMVMLHVPWPCSARFSMVEYLF*