Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084390 | KEH43467.1 | 93.694 | 222 | 14 | 0 | 1 | 222 | 42 | 263 | 4.06e-131 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084390 | A0A072VNU4 | 93.694 | 222 | 14 | 0 | 1 | 222 | 42 | 263 | 1.94e-131 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036550 | Msa0084390 | 0.931430 | 3.819212e-94 | -8.615850e-47 |
| Msa0038010 | Msa0084390 | 0.807761 | 4.316374e-50 | -8.615850e-47 |
| Msa0043840 | Msa0084390 | 0.847406 | 1.180007e-59 | -8.615850e-47 |
| Msa0046430 | Msa0084390 | 0.812573 | 3.961778e-51 | -8.615850e-47 |
| Msa0059880 | Msa0084390 | 0.807029 | 6.169420e-50 | -8.615850e-47 |
| Msa0084390 | Msa0090500 | 0.849779 | 2.597529e-60 | -8.615850e-47 |
| Msa0084390 | Msa0125600 | 0.805640 | 1.210815e-49 | -8.615850e-47 |
| Msa0084390 | Msa0130710 | 0.918058 | 2.488788e-86 | -8.615850e-47 |
| Msa0084390 | Msa0132250 | 0.800929 | 1.144515e-48 | -8.615850e-47 |
| Msa0084390 | Msa0137760 | 0.806541 | 7.823152e-50 | -8.615850e-47 |
| Msa0084390 | Msa0137970 | 0.864970 | 8.288005e-65 | -8.615850e-47 |
| Msa0084390 | Msa0139270 | 0.804376 | 2.225727e-49 | -8.615850e-47 |
| Msa0084390 | Msa0150910 | 0.802825 | 4.667601e-49 | -8.615850e-47 |
| Msa0084390 | Msa0176600 | 0.921440 | 3.570329e-88 | -8.615850e-47 |
| Msa0084390 | Msa0176620 | 0.818666 | 1.740331e-52 | -8.615850e-47 |
| Msa0084390 | Msa0183920 | 0.843971 | 1.009240e-58 | -8.615850e-47 |
| Msa0084390 | Msa0233200 | -0.810282 | 1.245412e-50 | -8.615850e-47 |
| Msa0084390 | Msa0269240 | 0.822991 | 1.761182e-53 | -8.615850e-47 |
| Msa0084390 | Msa0278940 | 0.802251 | 6.129747e-49 | -8.615850e-47 |
| Msa0084390 | Msa0336640 | 0.807689 | 4.472083e-50 | -8.615850e-47 |
| Msa0084390 | Msa0349910 | 0.823061 | 1.696281e-53 | -8.615850e-47 |
| Msa0084390 | Msa0369880 | 0.804483 | 2.113629e-49 | -8.615850e-47 |
| Msa0084390 | Msa0375550 | 0.806576 | 7.692761e-50 | -8.615850e-47 |
| Msa0084390 | Msa0424240 | 0.846169 | 2.570651e-59 | -8.615850e-47 |
| Msa0084390 | Msa0424300 | 0.812764 | 3.597026e-51 | -8.615850e-47 |
| Msa0084390 | Msa0430040 | -0.834136 | 3.569314e-56 | -8.615850e-47 |
| Msa0084390 | Msa0444210 | 0.815989 | 6.966738e-52 | -8.615850e-47 |
| Msa0084390 | Msa0478400 | 0.840277 | 9.580647e-58 | -8.615850e-47 |
| Msa0084390 | Msa0481050 | -0.813831 | 2.096999e-51 | -8.615850e-47 |
| Msa0084390 | Msa0487100 | 0.801602 | 8.333992e-49 | -8.615850e-47 |
| Msa0084390 | Msa0491770 | 0.834598 | 2.732970e-56 | -8.615850e-47 |
| Msa0084390 | Msa0500490 | -0.825266 | 5.148396e-54 | -8.615850e-47 |
| Msa0084390 | Msa0515930 | 0.811695 | 6.156678e-51 | -8.615850e-47 |
| Msa0084390 | Msa0524960 | -0.806081 | 9.781457e-50 | -8.615850e-47 |
| Msa0084390 | Msa0529360 | 0.807892 | 4.047422e-50 | -8.615850e-47 |
| Msa0084390 | Msa0538450 | 0.801720 | 7.881939e-49 | -8.615850e-47 |
| Msa0084390 | Msa0538520 | 0.809755 | 1.617393e-50 | -8.615850e-47 |
| Msa0084390 | Msa0538650 | 0.829116 | 6.162497e-55 | -8.615850e-47 |
| Msa0084390 | Msa0548760 | 0.820968 | 5.180964e-53 | -8.615850e-47 |
| Msa0084390 | Msa0584970 | 0.801714 | 7.905417e-49 | -8.615850e-47 |
| Msa0084390 | Msa0624930 | 0.804521 | 2.076021e-49 | -8.615850e-47 |
| Msa0084390 | Msa0651090 | 0.823430 | 1.390984e-53 | -8.615850e-47 |
| Msa0084390 | Msa0668220 | 0.801669 | 8.074810e-49 | -8.615850e-47 |
| Msa0084390 | Msa0671400 | 0.810967 | 8.858030e-51 | -8.615850e-47 |
| Msa0084390 | Msa0672780 | 0.823837 | 1.117199e-53 | -8.615850e-47 |
| Msa0084390 | Msa0676190 | 0.808768 | 2.632497e-50 | -8.615850e-47 |
| Msa0084390 | Msa0701460 | -0.800848 | 1.188693e-48 | -8.615850e-47 |
| Msa0084390 | Msa0701530 | -0.807847 | 4.137948e-50 | -8.615850e-47 |
| Msa0084390 | Msa0705810 | -0.810164 | 1.320705e-50 | -8.615850e-47 |
| Msa0084390 | Msa0708020 | 0.802571 | 5.265757e-49 | -8.615850e-47 |
| Msa0084390 | Msa0711240 | 0.803639 | 3.167347e-49 | -8.615850e-47 |
| Msa0084390 | Msa0715510 | 0.804062 | 2.586861e-49 | -8.615850e-47 |
| Msa0084390 | Msa0716600 | 0.829768 | 4.278648e-55 | -8.615850e-47 |
| Msa0084390 | Msa0716980 | 0.808842 | 2.538440e-50 | -8.615850e-47 |
| Msa0084390 | Msa0732970 | 0.803421 | 3.514975e-49 | -8.615850e-47 |
| Msa0084390 | Msa0735340 | 0.804179 | 2.446015e-49 | -8.615850e-47 |
| Msa0084390 | Msa0758000 | 0.820851 | 5.513686e-53 | -8.615850e-47 |
| Msa0084390 | Msa0758150 | 0.818284 | 2.124454e-52 | -8.615850e-47 |
| Msa0084390 | Msa0787860 | 0.807816 | 4.201561e-50 | -8.615850e-47 |
| Msa0084390 | Msa0813630 | -0.800083 | 1.702292e-48 | -8.615850e-47 |
| Msa0084390 | Msa0813840 | 0.801641 | 8.182632e-49 | -8.615850e-47 |
| Msa0084390 | Msa0817100 | 0.831357 | 1.747541e-55 | -8.615850e-47 |
| Msa0084390 | Msa0847140 | 0.821186 | 4.614877e-53 | -8.615850e-47 |
| Msa0084390 | Msa0854380 | 0.807610 | 4.647041e-50 | -8.615850e-47 |
| Msa0084390 | Msa0864160 | 0.819139 | 1.358778e-52 | -8.615850e-47 |
| Msa0084390 | Msa0871420 | 0.813136 | 2.981892e-51 | -8.615850e-47 |
| Msa0084390 | Msa0883640 | 0.815075 | 1.113116e-51 | -8.615850e-47 |
| Msa0084390 | Msa0886370 | 0.814595 | 1.422420e-51 | -8.615850e-47 |
| Msa0084390 | Msa0902340 | 0.816678 | 4.886014e-52 | -8.615850e-47 |
| Msa0084390 | Msa0910590 | 0.844038 | 9.680686e-59 | -8.615850e-47 |
| Msa0084390 | Msa0910830 | 0.814246 | 1.698442e-51 | -8.615850e-47 |
| Msa0084390 | Msa0931370 | 0.831534 | 1.581074e-55 | -8.615850e-47 |
| Msa0084390 | Msa0932930 | 0.803918 | 2.771073e-49 | -8.615850e-47 |
| Msa0084390 | Msa0948430 | 0.834673 | 2.615754e-56 | -8.615850e-47 |
| Msa0084390 | Msa0951060 | 0.821048 | 4.967193e-53 | -8.615850e-47 |
| Msa0084390 | Msa0960090 | 0.816112 | 6.539604e-52 | -8.615850e-47 |
| Msa0084390 | Msa0985250 | 0.824854 | 6.440331e-54 | -8.615850e-47 |
| Msa0084390 | Msa0985290 | 0.804633 | 1.966831e-49 | -8.615850e-47 |
| Msa0084390 | Msa0985700 | 0.814396 | 1.574117e-51 | -8.615850e-47 |
| Msa0084390 | Msa0987550 | 0.829236 | 5.761837e-55 | -8.615850e-47 |
| Msa0084390 | Msa1019220 | 0.803521 | 3.351321e-49 | -8.615850e-47 |
| Msa0084390 | Msa1019230 | 0.803431 | 3.497942e-49 | -8.615850e-47 |
| Msa0084390 | Msa1031060 | 0.801224 | 9.960783e-49 | -8.615850e-47 |
| Msa0084390 | Msa1036020 | 0.813263 | 2.796237e-51 | -8.615850e-47 |
| Msa0084390 | Msa1036590 | 0.807883 | 4.066366e-50 | -8.615850e-47 |
| Msa0084390 | Msa1040330 | 0.819786 | 9.671321e-53 | -8.615850e-47 |
| Msa0084390 | Msa1040730 | 0.805098 | 1.572349e-49 | -8.615850e-47 |
| Msa0084390 | Msa1046220 | 0.800442 | 1.438228e-48 | -8.615850e-47 |
| Msa0084390 | Msa1061760 | 0.809471 | 1.861573e-50 | -8.615850e-47 |
| Msa0084390 | Msa1061780 | 0.814109 | 1.821684e-51 | -8.615850e-47 |
| Msa0084390 | Msa1068900 | 0.805839 | 1.099751e-49 | -8.615850e-47 |
| Msa0084390 | Msa1076280 | 0.803331 | 3.669335e-49 | -8.615850e-47 |
| Msa0084390 | Msa1076830 | 0.830441 | 2.931170e-55 | -8.615850e-47 |
| Msa0084390 | Msa1076900 | 0.809596 | 1.749612e-50 | -8.615850e-47 |
| Msa0084390 | Msa1078300 | 0.814328 | 1.629618e-51 | -8.615850e-47 |
| Msa0084390 | Msa1083100 | 0.829949 | 3.866207e-55 | -8.615850e-47 |
| Msa0084390 | Msa1084800 | 0.807296 | 5.417103e-50 | -8.615850e-47 |
| Msa0084390 | Msa1085560 | 0.817310 | 3.523832e-52 | -8.615850e-47 |
| Msa0084390 | Msa1090180 | 0.803614 | 3.205418e-49 | -8.615850e-47 |
| Msa0084390 | Msa1101300 | -0.808060 | 3.727673e-50 | -8.615850e-47 |
| Msa0084390 | Msa1104130 | 0.804793 | 1.821362e-49 | -8.615850e-47 |
| Msa0084390 | Msa1109880 | 0.806587 | 7.650647e-50 | -8.615850e-47 |
| Msa0084390 | Msa1109890 | 0.809307 | 2.019000e-50 | -8.615850e-47 |
| Msa0084390 | Msa1121080 | 0.819445 | 1.157053e-52 | -8.615850e-47 |
| Msa0084390 | Msa1126460 | 0.831032 | 2.100340e-55 | -8.615850e-47 |
| Msa0084390 | Msa1126530 | 0.817611 | 3.013741e-52 | -8.615850e-47 |
| Msa0084390 | Msa1127940 | 0.808277 | 3.352368e-50 | -8.615850e-47 |
| Msa0084390 | Msa1150860 | 0.813441 | 2.556156e-51 | -8.615850e-47 |
| Msa0084390 | Msa1156670 | 0.827781 | 1.293959e-54 | -8.615850e-47 |
| Msa0084390 | Msa1165860 | 0.816404 | 5.626379e-52 | -8.615850e-47 |
| Msa0084390 | Msa1211160 | 0.803508 | 3.372162e-49 | -8.615850e-47 |
| Msa0084390 | Msa1211320 | 0.800172 | 1.632426e-48 | -8.615850e-47 |
| Msa0084390 | Msa1216120 | 0.803361 | 3.616738e-49 | -8.615850e-47 |
| Msa0084390 | Msa1219780 | 0.825140 | 5.513864e-54 | -8.615850e-47 |
| Msa0084390 | Msa1222030 | 0.801180 | 1.016687e-48 | -8.615850e-47 |
| Msa0084390 | Msa1223620 | 0.816492 | 5.379026e-52 | -8.615850e-47 |
| Msa0084390 | Msa1259570 | 0.802440 | 5.603511e-49 | -8.615850e-47 |
| Msa0084390 | Msa1263120 | 0.807057 | 6.088241e-50 | -8.615850e-47 |
| Msa0084390 | Msa1266710 | 0.814256 | 1.690330e-51 | -8.615850e-47 |
| Msa0084390 | Msa1299310 | 0.812906 | 3.349626e-51 | -8.615850e-47 |
| Msa0084390 | Msa1335500 | 0.817769 | 2.777502e-52 | -8.615850e-47 |
| Msa0084390 | Msa1362590 | 0.813203 | 2.882544e-51 | -8.615850e-47 |
| Msa0084390 | Msa1363690 | 0.834692 | 2.588077e-56 | -8.615850e-47 |
| Msa0084390 | Msa1370930 | 0.828001 | 1.146029e-54 | -8.615850e-47 |
| Msa0084390 | Msa1373560 | 0.810318 | 1.223255e-50 | -8.615850e-47 |
| Msa0084390 | Msa1376070 | 0.839072 | 1.971960e-57 | -8.615850e-47 |
| Msa0084390 | Msa1377460 | 0.807978 | 3.881554e-50 | -8.615850e-47 |
| Msa0084390 | Msa1377520 | 0.808399 | 3.156977e-50 | -8.615850e-47 |
| Msa0084390 | Msa1378400 | 0.813607 | 2.349384e-51 | -8.615850e-47 |
| Msa0084390 | Msa1378950 | 0.833477 | 5.215811e-56 | -8.615850e-47 |
| Msa0084390 | Msa1379250 | 0.832738 | 7.966116e-56 | -8.615850e-47 |
| Msa0084390 | Msa1387480 | 0.806147 | 9.473923e-50 | -8.615850e-47 |
| Msa0084390 | Msa1390040 | 0.816875 | 4.414149e-52 | -8.615850e-47 |
| Msa0084390 | Msa1395690 | 0.809165 | 2.165304e-50 | -8.615850e-47 |
| Msa0084390 | Msa1395720 | 0.931593 | 3.001469e-94 | -8.615850e-47 |
| Msa0084390 | Msa1396550 | 0.844943 | 5.527911e-59 | -8.615850e-47 |
| Msa0084390 | Msa1407210 | 0.822022 | 2.959106e-53 | -8.615850e-47 |
| Msa0084390 | Msa1417220 | 0.802008 | 6.877137e-49 | -8.615850e-47 |
| Msa0084390 | Msa1421130 | 0.825235 | 5.234955e-54 | -8.615850e-47 |
| Msa0084390 | Msa1421540 | 0.807864 | 4.103290e-50 | -8.615850e-47 |
| Msa0084390 | Msa1434700 | 0.816640 | 4.982348e-52 | -8.615850e-47 |
| Msa0084390 | Msa1441450 | 0.805665 | 1.196011e-49 | -8.615850e-47 |
| Msa0084390 | Msa1445780 | 0.846621 | 1.936563e-59 | -8.615850e-47 |
| Msa0084390 | Msa1466130 | 0.826394 | 2.779099e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0084390 | MtrunA17_Chr1g0199091 | 93.694 | 222 | 14 | 0 | 1 | 222 | 42 | 263 | 1.60e-134 | 388 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATTCTCTCCAATTTCT+TGG | 0.226035 | 1_2:+63778530 | None:intergenic |
| GGTAGTTTGAAATGACAATT+AGG | 0.230715 | 1_2:+63778163 | None:intergenic |
| CTCACAAGAGAGGAAGAATT+TGG | 0.235967 | 1_2:+63779341 | None:intergenic |
| GAGCTTCACTGTACCCATTT+AGG | 0.248704 | 1_2:+63778368 | None:intergenic |
| TGTCATTTCAAACTACCTTT+TGG | 0.288080 | 1_2:-63778157 | Msa0084390:CDS |
| TTGCACAACAACCAAGAAAT+TGG | 0.289698 | 1_2:-63778541 | Msa0084390:CDS |
| TAATTCTAATTCCTCCAATA+TGG | 0.332844 | 1_2:-63778215 | Msa0084390:CDS |
| AGAAATTGGAGAGAATTTCT+TGG | 0.337223 | 1_2:-63778527 | Msa0084390:CDS |
| ACCTTCCTCCAACGACTTCA+TGG | 0.368605 | 1_2:-63779213 | Msa0084390:CDS |
| TCAAAGTGGCTACTAACTTC+AGG | 0.382319 | 1_2:+63778274 | None:intergenic |
| AAAATAATTTATAGAGGTGT+TGG | 0.384583 | 1_2:-63778577 | Msa0084390:intron |
| TATAGAGGTGTTGGATCAAA+TGG | 0.395514 | 1_2:-63778568 | Msa0084390:intron |
| ATGCTTCGGATAACCAACTA+TGG | 0.408893 | 1_2:-63779184 | Msa0084390:CDS |
| AGACCAAGTGCTTACAAGAT+TGG | 0.417683 | 1_2:+63778312 | None:intergenic |
| GTAGTTTGAAATGACAATTA+GGG | 0.422857 | 1_2:+63778164 | None:intergenic |
| CTTCATGGCCGAACATGCTT+CGG | 0.438443 | 1_2:-63779198 | Msa0084390:CDS |
| TTGGTTATCCGAAGCATGTT+CGG | 0.438578 | 1_2:+63779190 | None:intergenic |
| ATTCAACAGTGAGGCTTGAA+TGG | 0.438689 | 1_2:+63779270 | None:intergenic |
| TACTAACTTCAGGGTCAGGT+GGG | 0.477199 | 1_2:+63778284 | None:intergenic |
| AACAGTGAGGCTTGAATGGT+TGG | 0.481356 | 1_2:+63779274 | None:intergenic |
| GAAACTTGATACAACAAGTT+GGG | 0.483370 | 1_2:-63778440 | Msa0084390:CDS |
| CTACTAACTTCAGGGTCAGG+TGG | 0.488776 | 1_2:+63778283 | None:intergenic |
| CAAAGTGGCTACTAACTTCA+GGG | 0.505301 | 1_2:+63778275 | None:intergenic |
| TTCTTCAAATAGTCACAAGC+TGG | 0.508018 | 1_2:+63778460 | None:intergenic |
| TGGCTACTAACTTCAGGGTC+AGG | 0.508130 | 1_2:+63778280 | None:intergenic |
| ATAAAACATGACTCCATAGT+TGG | 0.516595 | 1_2:+63779171 | None:intergenic |
| ATTGGAGAGAATTTCTTGGA+TGG | 0.521784 | 1_2:-63778523 | Msa0084390:CDS |
| AGAAACTTGATACAACAAGT+TGG | 0.527132 | 1_2:-63778441 | Msa0084390:CDS |
| GTATTGATGATGATCCATAT+TGG | 0.550681 | 1_2:+63778201 | None:intergenic |
| TATCCAATCTTGTAAGCACT+TGG | 0.551774 | 1_2:-63778315 | Msa0084390:CDS |
| CAAATTCTTCCTCTCTTGTG+AGG | 0.573672 | 1_2:-63779340 | Msa0084390:CDS |
| CATGATGTGGAATCTCCAAA+AGG | 0.578793 | 1_2:+63778142 | None:intergenic |
| TTCGGCCATGAAGTCGTTGG+AGG | 0.581056 | 1_2:+63779208 | None:intergenic |
| TTGGAGGAAGGTGGTGCATG+CGG | 0.587623 | 1_2:+63779224 | None:intergenic |
| AGTTGGGAATATAATACTAG+TGG | 0.594177 | 1_2:-63778424 | Msa0084390:CDS |
| GCCATGAAGTCGTTGGAGGA+AGG | 0.597276 | 1_2:+63779212 | None:intergenic |
| TTCTCTAATAGTGCATGATG+TGG | 0.607686 | 1_2:+63778129 | None:intergenic |
| ACATCATGCACTATTAGAGA+AGG | 0.611496 | 1_2:-63778127 | Msa0084390:CDS |
| ACTAACTTCAGGGTCAGGTG+GGG | 0.612027 | 1_2:+63778285 | None:intergenic |
| ATGAAGTCGTTGGAGGAAGG+TGG | 0.620238 | 1_2:+63779215 | None:intergenic |
| TATCTTGATCCTCACAAGAG+AGG | 0.622022 | 1_2:+63779331 | None:intergenic |
| CTCTTATTGAGAATAATGAA+AGG | 0.630132 | 1_2:-63778348 | Msa0084390:CDS |
| TGTTTGTTTGTGAATCAAAG+TGG | 0.631378 | 1_2:+63778260 | None:intergenic |
| ATGTTCGGCCATGAAGTCGT+TGG | 0.634214 | 1_2:+63779205 | None:intergenic |
| ATCAAACATAGTGTTTGACA+TGG | 0.644125 | 1_2:+63778486 | None:intergenic |
| CTCGACGAACACTCTTCGAG+AGG | 0.644553 | 1_2:+63779247 | None:intergenic |
| TTGATGATGATCCATATTGG+AGG | 0.673081 | 1_2:+63778204 | None:intergenic |
| TGCACTATTAGAGAAGGAGT+AGG | 0.675198 | 1_2:-63778121 | None:intergenic |
| TTCGAGAGGATTCAACAGTG+AGG | 0.716670 | 1_2:+63779261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTATTGAAATTAAC+TGG | - | chr1_2:63778471-63778490 | Msa0084390:CDS | 10.0% |
| !! | TTTATATTATTGAAATTAAC+TGG | - | chr1_2:63778471-63778490 | Msa0084390:CDS | 10.0% |
| !! | CTTATGAAAATAATTTATAG+AGG | - | chr1_2:63778890-63778909 | Msa0084390:intron | 15.0% |
| !! | CTTATGAAAATAATTTATAG+AGG | - | chr1_2:63778890-63778909 | Msa0084390:intron | 15.0% |
| !! | AACATCAAATATATAGCATA+TGG | + | chr1_2:63778443-63778462 | None:intergenic | 20.0% |
| !!! | TAGAAATTTTGTGAAGTTTA+AGG | - | chr1_2:63778534-63778553 | Msa0084390:CDS | 20.0% |
| !!! | AGAAATTTTGTGAAGTTTAA+GGG | - | chr1_2:63778535-63778554 | Msa0084390:CDS | 20.0% |
| !!! | TGTTTTAAGTTAGGTATATA+GGG | - | chr1_2:63778558-63778577 | Msa0084390:CDS | 20.0% |
| !! | TGAGTAAATAATATTCTTCT+AGG | - | chr1_2:63778609-63778628 | Msa0084390:intron | 20.0% |
| !!! | AAAATAATTTATAGAGGTGT+TGG | - | chr1_2:63778896-63778915 | Msa0084390:intron | 20.0% |
| !! | AACATCAAATATATAGCATA+TGG | + | chr1_2:63778443-63778462 | None:intergenic | 20.0% |
| !!! | TAGAAATTTTGTGAAGTTTA+AGG | - | chr1_2:63778534-63778553 | Msa0084390:CDS | 20.0% |
| !!! | AGAAATTTTGTGAAGTTTAA+GGG | - | chr1_2:63778535-63778554 | Msa0084390:CDS | 20.0% |
| !!! | TGTTTTAAGTTAGGTATATA+GGG | - | chr1_2:63778558-63778577 | Msa0084390:CDS | 20.0% |
| !! | TGAGTAAATAATATTCTTCT+AGG | - | chr1_2:63778609-63778628 | Msa0084390:intron | 20.0% |
| !!! | AAAATAATTTATAGAGGTGT+TGG | - | chr1_2:63778896-63778915 | Msa0084390:intron | 20.0% |
| !!! | GACAAATCTTTTAGAGTTTT+AGG | - | chr1_2:63778510-63778529 | Msa0084390:CDS | 25.0% |
| !!! | GTGTTTTAAGTTAGGTATAT+AGG | - | chr1_2:63778557-63778576 | Msa0084390:CDS | 25.0% |
| !!! | TTATAGATAGTGGAAAACAA+AGG | + | chr1_2:63778635-63778654 | None:intergenic | 25.0% |
| ! | CTCTTATTGAGAATAATGAA+AGG | - | chr1_2:63779125-63779144 | Msa0084390:intron | 25.0% |
| ! | TAATTCTAATTCCTCCAATA+TGG | - | chr1_2:63779258-63779277 | Msa0084390:CDS | 25.0% |
| !! | GTAGTTTGAAATGACAATTA+GGG | + | chr1_2:63779312-63779331 | None:intergenic | 25.0% |
| !!! | GACAAATCTTTTAGAGTTTT+AGG | - | chr1_2:63778510-63778529 | Msa0084390:CDS | 25.0% |
| !!! | GTGTTTTAAGTTAGGTATAT+AGG | - | chr1_2:63778557-63778576 | Msa0084390:CDS | 25.0% |
| !!! | TTATAGATAGTGGAAAACAA+AGG | + | chr1_2:63778635-63778654 | None:intergenic | 25.0% |
| ! | CTCTTATTGAGAATAATGAA+AGG | - | chr1_2:63779125-63779144 | Msa0084390:intron | 25.0% |
| ! | TAATTCTAATTCCTCCAATA+TGG | - | chr1_2:63779258-63779277 | Msa0084390:CDS | 25.0% |
| !! | GTAGTTTGAAATGACAATTA+GGG | + | chr1_2:63779312-63779331 | None:intergenic | 25.0% |
| ATAAAACATGACTCCATAGT+TGG | + | chr1_2:63778305-63778324 | None:intergenic | 30.0% | |
| !!! | GTTTAAGGGTGTTTTAAGTT+AGG | - | chr1_2:63778549-63778568 | Msa0084390:CDS | 30.0% |
| AAGTTAGGTATATAGGGTTA+AGG | - | chr1_2:63778564-63778583 | Msa0084390:CDS | 30.0% | |
| TGTTAGCATGTTATAGATAG+TGG | + | chr1_2:63778645-63778664 | None:intergenic | 30.0% | |
| ATATCTAACAGAATCCAAGA+GGG | + | chr1_2:63778767-63778786 | None:intergenic | 30.0% | |
| TATATCTAACAGAATCCAAG+AGG | + | chr1_2:63778768-63778787 | None:intergenic | 30.0% | |
| AGAAATTCTCTCCAATTTCT+TGG | + | chr1_2:63778946-63778965 | None:intergenic | 30.0% | |
| AGAAATTGGAGAGAATTTCT+TGG | - | chr1_2:63778946-63778965 | Msa0084390:intron | 30.0% | |
| ATCAAACATAGTGTTTGACA+TGG | + | chr1_2:63778990-63779009 | None:intergenic | 30.0% | |
| AGAAACTTGATACAACAAGT+TGG | - | chr1_2:63779032-63779051 | Msa0084390:intron | 30.0% | |
| GAAACTTGATACAACAAGTT+GGG | - | chr1_2:63779033-63779052 | Msa0084390:intron | 30.0% | |
| AGTTGGGAATATAATACTAG+TGG | - | chr1_2:63779049-63779068 | Msa0084390:intron | 30.0% | |
| !!! | AATTTTGAGAAGCACCTAAA+TGG | - | chr1_2:63779091-63779110 | Msa0084390:intron | 30.0% |
| !!! | ATTTTGAGAAGCACCTAAAT+GGG | - | chr1_2:63779092-63779111 | Msa0084390:intron | 30.0% |
| TGTTTGTTTGTGAATCAAAG+TGG | + | chr1_2:63779216-63779235 | None:intergenic | 30.0% | |
| !! | GTATTGATGATGATCCATAT+TGG | + | chr1_2:63779275-63779294 | None:intergenic | 30.0% |
| ! | GGTAGTTTGAAATGACAATT+AGG | + | chr1_2:63779313-63779332 | None:intergenic | 30.0% |
| !! | TGTCATTTCAAACTACCTTT+TGG | - | chr1_2:63779316-63779335 | Msa0084390:CDS | 30.0% |
| ATAAAACATGACTCCATAGT+TGG | + | chr1_2:63778305-63778324 | None:intergenic | 30.0% | |
| !!! | GTTTAAGGGTGTTTTAAGTT+AGG | - | chr1_2:63778549-63778568 | Msa0084390:CDS | 30.0% |
| AAGTTAGGTATATAGGGTTA+AGG | - | chr1_2:63778564-63778583 | Msa0084390:CDS | 30.0% | |
| TGTTAGCATGTTATAGATAG+TGG | + | chr1_2:63778645-63778664 | None:intergenic | 30.0% | |
| ATATCTAACAGAATCCAAGA+GGG | + | chr1_2:63778767-63778786 | None:intergenic | 30.0% | |
| TATATCTAACAGAATCCAAG+AGG | + | chr1_2:63778768-63778787 | None:intergenic | 30.0% | |
| AGAAATTCTCTCCAATTTCT+TGG | + | chr1_2:63778946-63778965 | None:intergenic | 30.0% | |
| AGAAATTGGAGAGAATTTCT+TGG | - | chr1_2:63778946-63778965 | Msa0084390:intron | 30.0% | |
| ATCAAACATAGTGTTTGACA+TGG | + | chr1_2:63778990-63779009 | None:intergenic | 30.0% | |
| AGAAACTTGATACAACAAGT+TGG | - | chr1_2:63779032-63779051 | Msa0084390:intron | 30.0% | |
| GAAACTTGATACAACAAGTT+GGG | - | chr1_2:63779033-63779052 | Msa0084390:intron | 30.0% | |
| AGTTGGGAATATAATACTAG+TGG | - | chr1_2:63779049-63779068 | Msa0084390:intron | 30.0% | |
| !!! | AATTTTGAGAAGCACCTAAA+TGG | - | chr1_2:63779091-63779110 | Msa0084390:intron | 30.0% |
| !!! | ATTTTGAGAAGCACCTAAAT+GGG | - | chr1_2:63779092-63779111 | Msa0084390:intron | 30.0% |
| TGTTTGTTTGTGAATCAAAG+TGG | + | chr1_2:63779216-63779235 | None:intergenic | 30.0% | |
| !! | GTATTGATGATGATCCATAT+TGG | + | chr1_2:63779275-63779294 | None:intergenic | 30.0% |
| ! | GGTAGTTTGAAATGACAATT+AGG | + | chr1_2:63779313-63779332 | None:intergenic | 30.0% |
| !! | TGTCATTTCAAACTACCTTT+TGG | - | chr1_2:63779316-63779335 | Msa0084390:CDS | 30.0% |
| !! | TCCTTTGTTCTGAAATTCTG+AGG | + | chr1_2:63778411-63778430 | None:intergenic | 35.0% |
| ! | GGTTTTTATTGGTATGTGGA+TGG | + | chr1_2:63778746-63778765 | None:intergenic | 35.0% |
| ! | AGAGGGTTTTTATTGGTATG+TGG | + | chr1_2:63778750-63778769 | None:intergenic | 35.0% |
| CATACCAATAAAAACCCTCT+TGG | - | chr1_2:63778750-63778769 | Msa0084390:intron | 35.0% | |
| ! | GAATCCAAGAGGGTTTTTAT+TGG | + | chr1_2:63778757-63778776 | None:intergenic | 35.0% |
| !! | TATAGAGGTGTTGGATCAAA+TGG | - | chr1_2:63778905-63778924 | Msa0084390:intron | 35.0% |
| TTGCACAACAACCAAGAAAT+TGG | - | chr1_2:63778932-63778951 | Msa0084390:intron | 35.0% | |
| ATTGGAGAGAATTTCTTGGA+TGG | - | chr1_2:63778950-63778969 | Msa0084390:intron | 35.0% | |
| TTCTTCAAATAGTCACAAGC+TGG | + | chr1_2:63779016-63779035 | None:intergenic | 35.0% | |
| TATCCAATCTTGTAAGCACT+TGG | - | chr1_2:63779158-63779177 | Msa0084390:intron | 35.0% | |
| !! | TTGATGATGATCCATATTGG+AGG | + | chr1_2:63779272-63779291 | None:intergenic | 35.0% |
| TTCTCTAATAGTGCATGATG+TGG | + | chr1_2:63779347-63779366 | None:intergenic | 35.0% | |
| ACATCATGCACTATTAGAGA+AGG | - | chr1_2:63779346-63779365 | Msa0084390:CDS | 35.0% | |
| !! | TCCTTTGTTCTGAAATTCTG+AGG | + | chr1_2:63778411-63778430 | None:intergenic | 35.0% |
| ! | GGTTTTTATTGGTATGTGGA+TGG | + | chr1_2:63778746-63778765 | None:intergenic | 35.0% |
| ! | AGAGGGTTTTTATTGGTATG+TGG | + | chr1_2:63778750-63778769 | None:intergenic | 35.0% |
| CATACCAATAAAAACCCTCT+TGG | - | chr1_2:63778750-63778769 | Msa0084390:intron | 35.0% | |
| ! | GAATCCAAGAGGGTTTTTAT+TGG | + | chr1_2:63778757-63778776 | None:intergenic | 35.0% |
| !! | TATAGAGGTGTTGGATCAAA+TGG | - | chr1_2:63778905-63778924 | Msa0084390:intron | 35.0% |
| TTGCACAACAACCAAGAAAT+TGG | - | chr1_2:63778932-63778951 | Msa0084390:intron | 35.0% | |
| ATTGGAGAGAATTTCTTGGA+TGG | - | chr1_2:63778950-63778969 | Msa0084390:intron | 35.0% | |
| TTCTTCAAATAGTCACAAGC+TGG | + | chr1_2:63779016-63779035 | None:intergenic | 35.0% | |
| TATCCAATCTTGTAAGCACT+TGG | - | chr1_2:63779158-63779177 | Msa0084390:intron | 35.0% | |
| !! | TTGATGATGATCCATATTGG+AGG | + | chr1_2:63779272-63779291 | None:intergenic | 35.0% |
| TTCTCTAATAGTGCATGATG+TGG | + | chr1_2:63779347-63779366 | None:intergenic | 35.0% | |
| ACATCATGCACTATTAGAGA+AGG | - | chr1_2:63779346-63779365 | Msa0084390:CDS | 35.0% | |
| CTCACAAGAGAGGAAGAATT+TGG | + | chr1_2:63778135-63778154 | None:intergenic | 40.0% | |
| CAAATTCTTCCTCTCTTGTG+AGG | - | chr1_2:63778133-63778152 | Msa0084390:CDS | 40.0% | |
| TATCTTGATCCTCACAAGAG+AGG | + | chr1_2:63778145-63778164 | None:intergenic | 40.0% | |
| ATTCAACAGTGAGGCTTGAA+TGG | + | chr1_2:63778206-63778225 | None:intergenic | 40.0% | |
| TTGGTTATCCGAAGCATGTT+CGG | + | chr1_2:63778286-63778305 | None:intergenic | 40.0% | |
| ATGCTTCGGATAACCAACTA+TGG | - | chr1_2:63778289-63778308 | Msa0084390:CDS | 40.0% | |
| GCCTCAGAATTTCAGAACAA+AGG | - | chr1_2:63778407-63778426 | Msa0084390:CDS | 40.0% | |
| GGTATGTGGATGGATATACA+TGG | + | chr1_2:63778736-63778755 | None:intergenic | 40.0% | |
| AGACCAAGTGCTTACAAGAT+TGG | + | chr1_2:63779164-63779183 | None:intergenic | 40.0% | |
| CAAAGTGGCTACTAACTTCA+GGG | + | chr1_2:63779201-63779220 | None:intergenic | 40.0% | |
| TCAAAGTGGCTACTAACTTC+AGG | + | chr1_2:63779202-63779221 | None:intergenic | 40.0% | |
| CATGATGTGGAATCTCCAAA+AGG | + | chr1_2:63779334-63779353 | None:intergenic | 40.0% | |
| CTCACAAGAGAGGAAGAATT+TGG | + | chr1_2:63778135-63778154 | None:intergenic | 40.0% | |
| CAAATTCTTCCTCTCTTGTG+AGG | - | chr1_2:63778133-63778152 | Msa0084390:CDS | 40.0% | |
| TATCTTGATCCTCACAAGAG+AGG | + | chr1_2:63778145-63778164 | None:intergenic | 40.0% | |
| ATTCAACAGTGAGGCTTGAA+TGG | + | chr1_2:63778206-63778225 | None:intergenic | 40.0% | |
| TTGGTTATCCGAAGCATGTT+CGG | + | chr1_2:63778286-63778305 | None:intergenic | 40.0% | |
| ATGCTTCGGATAACCAACTA+TGG | - | chr1_2:63778289-63778308 | Msa0084390:CDS | 40.0% | |
| GCCTCAGAATTTCAGAACAA+AGG | - | chr1_2:63778407-63778426 | Msa0084390:CDS | 40.0% | |
| GGTATGTGGATGGATATACA+TGG | + | chr1_2:63778736-63778755 | None:intergenic | 40.0% | |
| AGACCAAGTGCTTACAAGAT+TGG | + | chr1_2:63779164-63779183 | None:intergenic | 40.0% | |
| CAAAGTGGCTACTAACTTCA+GGG | + | chr1_2:63779201-63779220 | None:intergenic | 40.0% | |
| TCAAAGTGGCTACTAACTTC+AGG | + | chr1_2:63779202-63779221 | None:intergenic | 40.0% | |
| CATGATGTGGAATCTCCAAA+AGG | + | chr1_2:63779334-63779353 | None:intergenic | 40.0% | |
| AACAGTGAGGCTTGAATGGT+TGG | + | chr1_2:63778202-63778221 | None:intergenic | 45.0% | |
| TTCGAGAGGATTCAACAGTG+AGG | + | chr1_2:63778215-63778234 | None:intergenic | 45.0% | |
| GAGCTTCACTGTACCCATTT+AGG | + | chr1_2:63779108-63779127 | None:intergenic | 45.0% | |
| TACTAACTTCAGGGTCAGGT+GGG | + | chr1_2:63779192-63779211 | None:intergenic | 45.0% | |
| AACAGTGAGGCTTGAATGGT+TGG | + | chr1_2:63778202-63778221 | None:intergenic | 45.0% | |
| TTCGAGAGGATTCAACAGTG+AGG | + | chr1_2:63778215-63778234 | None:intergenic | 45.0% | |
| GAGCTTCACTGTACCCATTT+AGG | + | chr1_2:63779108-63779127 | None:intergenic | 45.0% | |
| TACTAACTTCAGGGTCAGGT+GGG | + | chr1_2:63779192-63779211 | None:intergenic | 45.0% | |
| ATGAAGTCGTTGGAGGAAGG+TGG | + | chr1_2:63778261-63778280 | None:intergenic | 50.0% | |
| ACCTTCCTCCAACGACTTCA+TGG | - | chr1_2:63778260-63778279 | Msa0084390:CDS | 50.0% | |
| ATGTTCGGCCATGAAGTCGT+TGG | + | chr1_2:63778271-63778290 | None:intergenic | 50.0% | |
| CTTCATGGCCGAACATGCTT+CGG | - | chr1_2:63778275-63778294 | Msa0084390:CDS | 50.0% | |
| ACTAACTTCAGGGTCAGGTG+GGG | + | chr1_2:63779191-63779210 | None:intergenic | 50.0% | |
| CTACTAACTTCAGGGTCAGG+TGG | + | chr1_2:63779193-63779212 | None:intergenic | 50.0% | |
| TGGCTACTAACTTCAGGGTC+AGG | + | chr1_2:63779196-63779215 | None:intergenic | 50.0% | |
| ATGAAGTCGTTGGAGGAAGG+TGG | + | chr1_2:63778261-63778280 | None:intergenic | 50.0% | |
| ACCTTCCTCCAACGACTTCA+TGG | - | chr1_2:63778260-63778279 | Msa0084390:CDS | 50.0% | |
| ATGTTCGGCCATGAAGTCGT+TGG | + | chr1_2:63778271-63778290 | None:intergenic | 50.0% | |
| CTTCATGGCCGAACATGCTT+CGG | - | chr1_2:63778275-63778294 | Msa0084390:CDS | 50.0% | |
| ACTAACTTCAGGGTCAGGTG+GGG | + | chr1_2:63779191-63779210 | None:intergenic | 50.0% | |
| CTACTAACTTCAGGGTCAGG+TGG | + | chr1_2:63779193-63779212 | None:intergenic | 50.0% | |
| TGGCTACTAACTTCAGGGTC+AGG | + | chr1_2:63779196-63779215 | None:intergenic | 50.0% | |
| CTCGACGAACACTCTTCGAG+AGG | + | chr1_2:63778229-63778248 | None:intergenic | 55.0% | |
| TTGGAGGAAGGTGGTGCATG+CGG | + | chr1_2:63778252-63778271 | None:intergenic | 55.0% | |
| GCCATGAAGTCGTTGGAGGA+AGG | + | chr1_2:63778264-63778283 | None:intergenic | 55.0% | |
| TTCGGCCATGAAGTCGTTGG+AGG | + | chr1_2:63778268-63778287 | None:intergenic | 55.0% | |
| CTCGACGAACACTCTTCGAG+AGG | + | chr1_2:63778229-63778248 | None:intergenic | 55.0% | |
| TTGGAGGAAGGTGGTGCATG+CGG | + | chr1_2:63778252-63778271 | None:intergenic | 55.0% | |
| GCCATGAAGTCGTTGGAGGA+AGG | + | chr1_2:63778264-63778283 | None:intergenic | 55.0% | |
| TTCGGCCATGAAGTCGTTGG+AGG | + | chr1_2:63778268-63778287 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 63778123 | 63779372 | 63778123 | ID=Msa0084390;Name=Msa0084390 |
| chr1_2 | mRNA | 63778123 | 63779372 | 63778123 | ID=Msa0084390-mRNA-1;Parent=Msa0084390;Name=Msa0084390-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|0.5|2|0|222 |
| chr1_2 | exon | 63779170 | 63779372 | 63779170 | ID=Msa0084390-mRNA-1:exon:21406;Parent=Msa0084390-mRNA-1 |
| chr1_2 | exon | 63778123 | 63778585 | 63778123 | ID=Msa0084390-mRNA-1:exon:21405;Parent=Msa0084390-mRNA-1 |
| chr1_2 | CDS | 63779170 | 63779372 | 63779170 | ID=Msa0084390-mRNA-1:cds;Parent=Msa0084390-mRNA-1 |
| chr1_2 | CDS | 63778123 | 63778585 | 63778123 | ID=Msa0084390-mRNA-1:cds;Parent=Msa0084390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
