AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302220 MtrunA17_Chr2g0328001 100.000 166 0 0 1 166 1 166 3.35e-124 346
Msa0302220 MtrunA17_Chr4g0031181 93.373 166 11 0 1 166 1 166 2.80e-107 303
Msa0302220 MtrunA17_Chr8g0362321 35.802 162 90 2 1 162 1 148 1.05e-33 116
Msa0302220 MtrunA17_Chr4g0060351 35.802 162 90 2 1 162 1 148 5.11e-33 114
Msa0302220 MtrunA17_Chr7g0275361 36.306 157 86 2 5 161 2 144 1.74e-30 108
Msa0302220 MtrunA17_Chr3g0108261 35.669 157 87 2 5 161 2 144 5.86e-29 104
Msa0302220 MtrunA17_Chr5g0432831 35.669 157 87 2 5 161 2 144 7.59e-29 103
Msa0302220 MtrunA17_Chr1g0154011 35.032 157 88 2 5 161 2 144 2.81e-28 102
Msa0302220 MtrunA17_Chr4g0037011 35.669 157 87 2 5 161 2 144 3.34e-28 102
Msa0302220 MtrunA17_Chr8g0369311 33.758 157 90 2 5 161 58 200 1.49e-26 99.8
Msa0302220 MtrunA17_Chr4g0038891 36.184 152 82 3 9 160 37 173 4.82e-26 97.8
Msa0302220 MtrunA17_Chr1g0199951 36.774 155 84 2 3 157 40 180 1.04e-24 94.7
Msa0302220 MtrunA17_Chr5g0396451 34.868 152 84 3 9 160 37 173 6.97e-24 92.0
Msa0302220 MtrunA17_Chr2g0316211 34.074 135 75 2 11 145 12 132 1.06e-23 90.9
Msa0302220 MtrunA17_Chr2g0316201 33.333 135 76 2 11 145 12 132 3.78e-23 89.4
Msa0302220 MtrunA17_Chr3g0139901 33.613 119 65 2 28 145 28 133 6.60e-22 86.3
Msa0302220 MtrunA17_Chr5g0401831 34.109 129 74 2 33 161 37 154 7.63e-21 83.6
Msa0302220 MtrunA17_Chr4g0053191 32.075 159 93 2 1 155 1 148 1.01e-20 83.2
Msa0302220 MtrunA17_Chr8g0378601 34.615 130 71 2 2 131 20 135 7.16e-20 81.3
Msa0302220 MtrunA17_Chr3g0131871 28.986 138 82 4 9 144 7 130 1.90e-18 78.2
Msa0302220 MtrunA17_Chr5g0403591 30.000 120 71 1 40 159 63 169 3.35e-14 67.0
Msa0302220 MtrunA17_Chr8g0372391 30.833 120 67 3 1 119 12 116 1.32e-12 62.0
Msa0302220 MtrunA17_Chr5g0404931 32.143 112 60 3 9 119 20 116 6.98e-12 60.1
Msa0302220 MtrunA17_Chr7g0254701 26.207 145 93 2 9 153 15 145 1.38e-11 60.8
Msa0302220 MtrunA17_Chr8g0345331 29.412 136 66 6 1 127 1 115 3.79e-11 59.7
Msa0302220 MtrunA17_Chr4g0068301 28.205 156 81 6 1 148 7 139 4.25e-11 60.1
Msa0302220 MtrunA17_Chr8g0376111 36.000 100 55 4 31 127 66 159 4.70e-11 60.1
Msa0302220 MtrunA17_Chr4g0059291 24.051 158 103 5 10 164 6 149 6.63e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302220 AT5G59300.1 92.169 166 13 0 1 166 1 166 1.20e-107 304
Msa0302220 AT3G46460.1 91.566 166 14 0 1 166 1 166 7.09e-106 300
Msa0302220 AT3G55380.1 87.805 164 20 0 3 166 4 167 3.27e-100 285
Msa0302220 AT3G55380.2 71.717 198 22 1 3 166 4 201 4.01e-92 266
Msa0302220 AT3G46460.3 90.598 117 11 0 50 166 8 124 1.96e-78 229
Msa0302220 AT3G46460.2 90.598 117 11 0 50 166 8 124 1.96e-78 229
Msa0302220 AT2G02760.1 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0302220 AT2G02760.2 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0302220 AT2G02760.4 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0302220 AT2G02760.3 35.802 162 90 2 1 162 1 148 3.60e-33 115
Msa0302220 AT1G14400.1 35.802 162 90 2 1 162 1 148 3.64e-33 115
Msa0302220 AT1G14400.2 35.802 162 90 2 1 162 1 148 3.64e-33 115
Msa0302220 AT5G62540.1 36.420 162 89 2 1 162 1 148 1.36e-32 114
Msa0302220 AT3G08700.2 33.758 157 91 1 5 161 2 145 9.23e-30 106
Msa0302220 AT3G08700.1 33.758 157 91 1 5 161 2 145 9.23e-30 106
Msa0302220 AT3G08690.2 35.669 157 87 2 5 161 2 144 9.38e-30 106
Msa0302220 AT3G08690.1 35.669 157 87 2 5 161 2 144 9.38e-30 106
Msa0302220 AT1G64230.2 36.306 157 86 2 5 161 2 144 3.87e-29 105
Msa0302220 AT1G64230.1 36.306 157 86 2 5 161 2 144 3.87e-29 105
Msa0302220 AT4G27960.1 35.032 157 88 2 5 161 2 144 6.95e-29 104
Msa0302220 AT5G41700.5 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0302220 AT5G41700.2 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0302220 AT5G41700.1 35.032 157 88 2 5 161 2 144 1.78e-28 103
Msa0302220 AT5G53300.2 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0302220 AT5G53300.4 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0302220 AT5G53300.1 34.395 157 89 2 5 161 2 144 3.56e-28 102
Msa0302220 AT4G27960.2 34.161 161 92 2 1 161 28 174 5.34e-28 103
Msa0302220 AT5G56150.1 33.121 157 91 2 5 161 2 144 7.18e-27 99.4
Msa0302220 AT5G41700.4 34.177 158 89 3 5 161 2 145 2.85e-26 97.8
Msa0302220 AT1G64230.3 32.727 165 90 2 5 161 2 153 9.18e-26 96.7
Msa0302220 AT2G16740.1 31.210 157 94 2 5 161 2 144 5.52e-24 91.7
Msa0302220 AT1G64230.5 35.000 120 65 1 33 152 71 177 1.98e-23 91.7
Msa0302220 AT1G64230.4 35.000 120 65 1 33 152 71 177 1.98e-23 91.7
Msa0302220 AT1G50490.1 35.878 131 70 2 30 160 60 176 2.89e-23 90.9
Msa0302220 AT5G25760.1 34.932 146 78 4 2 145 3 133 2.97e-23 90.1
Msa0302220 AT5G25760.2 34.932 146 78 4 2 145 3 133 2.97e-23 90.1
Msa0302220 AT1G16890.2 33.333 135 76 2 11 145 12 132 4.04e-23 89.7
Msa0302220 AT1G78870.2 33.333 135 76 2 11 145 12 132 5.45e-23 89.4
Msa0302220 AT3G20060.1 34.211 152 85 3 9 160 41 177 8.62e-23 89.7
Msa0302220 AT3G20060.2 34.351 131 72 2 30 160 16 132 3.97e-22 86.7
Msa0302220 AT5G41700.3 37.607 117 59 2 5 121 2 104 2.32e-21 85.1
Msa0302220 AT1G16890.3 34.127 126 69 2 20 145 30 141 4.05e-21 84.7
Msa0302220 AT3G57870.1 34.437 151 84 2 9 155 10 149 6.45e-21 84.3
Msa0302220 AT1G36340.2 35.606 132 71 2 24 155 27 144 6.84e-21 84.0
Msa0302220 AT1G36340.1 35.606 132 71 2 24 155 27 144 6.84e-21 84.0
Msa0302220 AT5G53300.3 37.069 116 59 2 4 119 1 102 1.34e-20 82.0
Msa0302220 AT1G16890.1 33.945 109 59 1 37 145 4 99 1.77e-20 82.0
Msa0302220 AT1G78870.4 33.945 109 59 1 37 145 4 99 1.81e-20 82.0
Msa0302220 AT3G24515.1 32.143 168 97 3 2 161 4 162 3.67e-20 86.3
Msa0302220 AT5G56150.2 34.483 116 62 2 5 120 2 103 3.98e-20 80.9
Msa0302220 AT1G78870.1 33.636 110 59 2 37 145 4 100 1.10e-18 77.4
Msa0302220 AT3G24515.3 32.558 129 78 2 33 161 68 187 1.49e-17 79.0
Msa0302220 AT5G50870.1 29.710 138 81 4 9 144 7 130 2.23e-17 75.9
Msa0302220 AT5G50870.2 29.927 137 80 4 9 143 7 129 7.59e-17 74.7
Msa0302220 AT3G13550.1 31.544 149 85 3 9 154 41 175 1.13e-16 73.6
Msa0302220 AT1G78870.3 31.304 115 65 2 11 125 12 112 1.50e-16 71.6
Msa0302220 AT3G13550.2 32.787 122 68 2 9 130 41 148 2.00e-14 67.4
Msa0302220 AT5G05080.2 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0302220 AT5G05080.3 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0302220 AT5G05080.1 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0302220 AT5G05080.4 27.586 145 91 2 9 153 15 145 4.07e-14 68.2
Msa0302220 AT2G18600.1 28.571 133 81 2 31 163 57 175 4.27e-14 67.0
Msa0302220 AT2G18600.2 28.571 133 81 2 31 163 57 175 4.27e-14 67.0
Msa0302220 AT4G36800.2 29.661 118 70 1 42 159 66 170 6.84e-14 66.6
Msa0302220 AT4G36800.1 29.661 118 70 1 42 159 66 170 6.84e-14 66.6
Msa0302220 AT1G45050.1 30.973 113 62 3 9 120 20 117 1.11e-12 62.8
Msa0302220 AT1G63800.1 25.974 154 98 4 10 161 6 145 1.68e-12 62.8
Msa0302220 AT1G75440.1 30.833 120 67 3 1 119 12 116 1.84e-12 62.0
Msa0302220 AT5G42990.1 30.973 113 62 3 9 120 20 117 2.12e-12 62.0
Msa0302220 AT2G46030.5 27.273 154 96 4 10 161 6 145 2.72e-12 62.0
Msa0302220 AT2G46030.1 27.273 154 96 4 10 161 6 145 2.72e-12 62.0
Msa0302220 AT2G46030.4 30.709 127 73 3 37 161 35 148 2.80e-12 62.0
Msa0302220 AT2G46030.2 30.709 127 73 3 37 161 35 148 2.80e-12 62.0
Msa0302220 AT1G63800.2 28.906 128 76 3 36 161 16 130 5.23e-12 61.2
Msa0302220 AT2G46030.3 27.273 154 96 4 10 161 78 217 8.29e-12 62.0
Msa0302220 AT5G41340.1 28.906 128 76 3 36 161 31 145 9.22e-12 60.8
Msa0302220 AT3G17000.1 30.769 130 60 6 11 131 18 126 1.20e-11 62.0
Msa0302220 AT1G17280.4 29.861 144 78 6 1 137 1 128 2.43e-11 60.5
Msa0302220 AT1G45050.2 34.118 85 53 2 9 92 20 102 4.77e-11 57.4
Msa0302220 AT5G50430.1 30.137 146 69 7 1 137 1 122 7.04e-11 59.3
Msa0302220 AT5G50430.2 30.137 146 69 7 1 137 1 122 7.04e-11 59.3
Msa0302220 AT1G17280.9 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.7 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.6 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.2 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.5 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.3 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.1 30.137 146 69 7 1 137 1 122 8.75e-11 58.9
Msa0302220 AT1G17280.8 30.137 146 69 7 1 137 1 122 8.75e-11 58.9

Find 69 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGGAGTGTAACCATAAT+TGG 0.137403 2_3:-58988567 Msa0302220:CDS
AACACTTGAGCCTAAATATT+TGG 0.152712 2_3:-58988966 None:intergenic
CTTTGCTAAAATTTGATATT+AGG 0.200359 2_3:-58984314 Msa0302220:three_prime_UTR
AGTATCATATCGATGCTTTC+TGG 0.256685 2_3:-58986086 Msa0302220:CDS
GAGAGACGATTTCAAGAAAA+AGG 0.291595 2_3:-58984650 Msa0302220:CDS
GCTTATACAATATTATGATA+TGG 0.305572 2_3:-58984273 Msa0302220:three_prime_UTR
TGTATCTGGTGGCCCAATTA+TGG 0.313031 2_3:+58988554 None:intergenic
TTCACTGATGGTGGACTGTT+TGG 0.316044 2_3:+58987331 None:intergenic
AGAACTTACTAAAGTGTATC+TGG 0.332749 2_3:+58988540 None:intergenic
AGGCCATGAAAGAGTGAGTT+TGG 0.346682 2_3:+58988777 None:intergenic
ATAAATGCAACCAAATATTT+AGG 0.352313 2_3:+58988956 None:intergenic
CTTGCAAGCTCATAACCATT+TGG 0.354028 2_3:+58986984 None:intergenic
TTTGCCGGAGATTCATCATT+AGG 0.355777 2_3:+58986062 None:intergenic
ACTGCAGCTTCAACATTTGC+CGG 0.368423 2_3:+58986047 None:intergenic
TTTGAAGGAGGAGGCTTGCT+TGG 0.372918 2_3:+58988753 None:intergenic
TCTCCAAACTCACTCTTTCA+TGG 0.373541 2_3:-58988780 Msa0302220:exon
ATATCTATTCTTCATCCTCC+TGG 0.379234 2_3:-58987014 Msa0302220:CDS
CTACACAGATCAACGGTAAC+AGG 0.379251 2_3:+58984518 None:intergenic
TTGAAGGAGGAGGCTTGCTT+GGG 0.393797 2_3:+58988754 None:intergenic
CGATTTAATTCATGTCGATC+AGG 0.399192 2_3:+58988914 None:intergenic
TGCAGAAGGAGTGGAGAGAC+AGG 0.411818 2_3:-58984672 Msa0302220:intron
TGAAGTTCACTTCAGAGATA+TGG 0.412336 2_3:-58987312 Msa0302220:CDS
TTGCAAGCTCATAACCATTT+GGG 0.423493 2_3:+58986985 None:intergenic
CATAATATTGTATAAGCAAA+AGG 0.430377 2_3:+58984279 None:intergenic
GGCAATTATACCAGTAAAGA+AGG 0.436226 2_3:+58984223 None:intergenic
GATATGCAAACCCGCCCATC+AGG 0.446681 2_3:+58987032 None:intergenic
TATCTATTCTTCATCCTCCT+GGG 0.449275 2_3:-58987013 Msa0302220:CDS
AATGGAGTGTAACCATAATT+GGG 0.465426 2_3:-58988566 Msa0302220:CDS
GATCTGTGTAGACTTGCTAT+TGG 0.465836 2_3:-58984506 Msa0302220:three_prime_UTR
AGAACATACAACTTAATGTA+AGG 0.497442 2_3:-58984550 Msa0302220:three_prime_UTR
AAGGAGGAGGCTTGCTTGGG+AGG 0.498537 2_3:+58988757 None:intergenic
ATACAACTTAATGTAAGGAT+TGG 0.511298 2_3:-58984545 Msa0302220:three_prime_UTR
GTATTTGCAGTATATCCTGA+TGG 0.513643 2_3:-58987047 Msa0302220:intron
TGGTCCTAATGATGAATCTC+CGG 0.517026 2_3:-58986066 Msa0302220:CDS
TTGTTGTATTCTTCTCTACA+TGG 0.521579 2_3:-58984447 Msa0302220:three_prime_UTR
CCTCCTGGGGATGACCCAAA+TGG 0.528218 2_3:-58986999 Msa0302220:CDS
TATAAGCAAAAGGCAAAACT+TGG 0.530566 2_3:+58984289 None:intergenic
TAACCATTTGGGTCATCCCC+AGG 0.531119 2_3:+58986996 None:intergenic
CTCGTATCTTGCTATTGTGA+AGG 0.532941 2_3:-58984575 Msa0302220:three_prime_UTR
ATGAGCTTGCAAGTGAGCGC+TGG 0.535537 2_3:-58986974 Msa0302220:CDS
TGCAGTATATCCTGATGGGC+GGG 0.538018 2_3:-58987042 Msa0302220:intron
TATTTGCAGTATATCCTGAT+GGG 0.549933 2_3:-58987046 Msa0302220:intron
TCAATTTCTTGTAGTGAAGG+AGG 0.560751 2_3:-58987391 Msa0302220:intron
CCAGCGGAAAAGCCATCGAC+GGG 0.566293 2_3:+58988615 None:intergenic
GAAATGTTGTGATTCACAGC+CGG 0.566809 2_3:-58984601 Msa0302220:exon
TTGCAGTATATCCTGATGGG+CGG 0.572889 2_3:-58987043 Msa0302220:intron
CATACAAATAATCGAAGTGT+GGG 0.573196 2_3:-58988869 Msa0302220:five_prime_UTR
TGTTTATATTGCAGAAGGAG+TGG 0.573707 2_3:-58984681 Msa0302220:intron
CTTTGTAAACATCCCGTCGA+TGG 0.573847 2_3:-58988627 Msa0302220:CDS
ATCTATTCTTCATCCTCCTG+GGG 0.574309 2_3:-58987012 Msa0302220:CDS
TCGTATCTTGCTATTGTGAA+GGG 0.578648 2_3:-58984574 Msa0302220:three_prime_UTR
AATAGCAAGATACGAGGGGC+CGG 0.579649 2_3:+58984582 None:intergenic
ACATACAAATAATCGAAGTG+TGG 0.584409 2_3:-58988870 Msa0302220:five_prime_UTR
CCGATGTGTGCGGAAGTCAC+AGG 0.588338 2_3:-58984623 Msa0302220:CDS
GAAGTGAACTTCACTGATGG+TGG 0.596810 2_3:+58987322 None:intergenic
ACCAGCGGAAAAGCCATCGA+CGG 0.610363 2_3:+58988614 None:intergenic
GGACTGTTTGGATAGTTCGA+CGG 0.629490 2_3:+58987343 None:intergenic
GTTCGACGGAAAGCTCATGA+TGG 0.632587 2_3:+58987357 None:intergenic
TTCACAATAGCAAGATACGA+GGG 0.634071 2_3:+58984577 None:intergenic
AGCAAGTCTACACAGATCAA+CGG 0.641649 2_3:+58984511 None:intergenic
TCAGAGATATGGCATCCCAA+TGG 0.645768 2_3:-58987301 Msa0302220:intron
CCTGTGACTTCCGCACACAT+CGG 0.655883 2_3:+58984623 None:intergenic
TCTGAAGTGAACTTCACTGA+TGG 0.656247 2_3:+58987319 None:intergenic
CTTCACAATAGCAAGATACG+AGG 0.665581 2_3:+58984576 None:intergenic
AAAAGGTTAGCCGATGTGTG+CGG 0.675247 2_3:-58984633 Msa0302220:CDS
ACTTACTAAAGTGTATCTGG+TGG 0.687155 2_3:+58988543 None:intergenic
GGTTTCGTCGACTAAACCAG+CGG 0.711029 2_3:+58988599 None:intergenic
CCATTTGGGTCATCCCCAGG+AGG 0.711844 2_3:+58986999 None:intergenic
TCACAATAGCAAGATACGAG+GGG 0.715530 2_3:+58984578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAGTTAAAAAGAAAT+TGG - chr2_3:58986642-58986661 Msa0302220:intron 10.0%
!!! TAAAAGATCGTTTTTTTAAT+TGG - chr2_3:58984752-58984771 Msa0302220:intron 15.0%
!! AAATATCATAATCAATAAAC+CGG + chr2_3:58985313-58985332 None:intergenic 15.0%
!! TTGATTATGATATTTATTCT+AGG - chr2_3:58985318-58985337 Msa0302220:intron 15.0%
!! AAATAAACGAATTGAATTTA+TGG + chr2_3:58986227-58986246 None:intergenic 15.0%
!!! ATTTTAAAAAAATTGGTCAT+CGG + chr2_3:58986623-58986642 None:intergenic 15.0%
!! ATTAAATCGTTATGTTAAAA+AGG + chr2_3:58986821-58986840 None:intergenic 15.0%
!! AATCATGTAAATAAGAAAAA+AGG + chr2_3:58987129-58987148 None:intergenic 15.0%
!! TAATATCAATATAGTAGTTT+AGG - chr2_3:58987564-58987583 Msa0302220:intron 15.0%
!! CTTATGTAATGATCATTTAT+TGG - chr2_3:58984698-58984717 Msa0302220:intron 20.0%
!!! ATAAGTTTTTTGAGACTATT+CGG + chr2_3:58985209-58985228 None:intergenic 20.0%
!! AAAACTTATACCAGTTTATA+AGG - chr2_3:58985220-58985239 Msa0302220:intron 20.0%
!!! TTTTATTTGACCTTATAAAC+TGG + chr2_3:58985233-58985252 None:intergenic 20.0%
!! AATATCATAATCAATAAACC+GGG + chr2_3:58985312-58985331 None:intergenic 20.0%
!!! TTTATTCTAGGTTTTTTTGT+TGG - chr2_3:58985330-58985349 Msa0302220:intron 20.0%
!! ATTAATTTACTTCCTATGAT+TGG - chr2_3:58985431-58985450 Msa0302220:intron 20.0%
!! TTATTCATAAGCAAATAAAC+AGG + chr2_3:58986995-58987014 None:intergenic 20.0%
!!! GTTTTACTAAGAATATGTTA+TGG - chr2_3:58987251-58987270 Msa0302220:intron 20.0%
!!! AGTGTTTTACTAGTAAATAA+AGG + chr2_3:58987285-58987304 None:intergenic 20.0%
!! GAGATATCTACATAAATAAT+TGG + chr2_3:58987341-58987360 None:intergenic 20.0%
!!! TGGTTTTAATATTTTCTTGT+GGG + chr2_3:58987804-58987823 None:intergenic 20.0%
!! TTAAGAAAGCTATAAAAAAC+AGG + chr2_3:58988083-58988102 None:intergenic 20.0%
!!! CTAATATCAAATTTTAGCAA+AGG + chr2_3:58988830-58988849 None:intergenic 20.0%
!! CTTTGCTAAAATTTGATATT+AGG - chr2_3:58988828-58988847 Msa0302220:five_prime_UTR 20.0%
!! CATAATATTGTATAAGCAAA+AGG + chr2_3:58988866-58988885 None:intergenic 20.0%
!! GCTTATACAATATTATGATA+TGG - chr2_3:58988869-58988888 Msa0302220:five_prime_UTR 20.0%
! TAAGCGATGAAATGAAAAAA+GGG + chr2_3:58984437-58984456 None:intergenic 25.0%
! ATAAGCGATGAAATGAAAAA+AGG + chr2_3:58984438-58984457 None:intergenic 25.0%
!! ATTTATTGGATTTTCTGTGA+TGG - chr2_3:58984712-58984731 Msa0302220:intron 25.0%
!! TTTATTGGATTTTCTGTGAT+GGG - chr2_3:58984713-58984732 Msa0302220:intron 25.0%
!!! AAGATCGTTTTTTTAATTGG+TGG - chr2_3:58984755-58984774 Msa0302220:intron 25.0%
!!! AGATCGTTTTTTTAATTGGT+GGG - chr2_3:58984756-58984775 Msa0302220:intron 25.0%
!! ATTGATGATATTGTTTCATG+AGG - chr2_3:58984840-58984859 Msa0302220:intron 25.0%
! GTAAAAGAAGTGATATTTGA+AGG - chr2_3:58984880-58984899 Msa0302220:intron 25.0%
! GGTAAAAAGAATACAGATTA+TGG - chr2_3:58984906-58984925 Msa0302220:intron 25.0%
! ATAAGTTGTTTATCCAAACA+GGG + chr2_3:58984932-58984951 None:intergenic 25.0%
! TATAAGTTGTTTATCCAAAC+AGG + chr2_3:58984933-58984952 None:intergenic 25.0%
!!! TAAGTTTTTTGAGACTATTC+GGG + chr2_3:58985208-58985227 None:intergenic 25.0%
! TAGGAAGTAAATTAATGATG+AGG + chr2_3:58985427-58985446 None:intergenic 25.0%
! GATGAAGTAAATTAATGATG+AGG + chr2_3:58985615-58985634 None:intergenic 25.0%
! ATTAATTTACTTCATCCGAT+TGG - chr2_3:58985619-58985638 Msa0302220:intron 25.0%
!!! GTAACATCCTATGTTTTTTA+AGG - chr2_3:58985946-58985965 Msa0302220:intron 25.0%
! TGTTGTTCCTTAAAAAACAT+AGG + chr2_3:58985956-58985975 None:intergenic 25.0%
! GACATTTCTTTGATTAAAAC+AGG - chr2_3:58986049-58986068 Msa0302220:CDS 25.0%
! CATTATTCAATTGATATTGC+TGG - chr2_3:58986269-58986288 Msa0302220:intron 25.0%
! TAGATGCAAAATACTTGTAA+AGG - chr2_3:58986406-58986425 Msa0302220:intron 25.0%
! TAACACTTAAATTAGCTGTA+AGG + chr2_3:58986845-58986864 None:intergenic 25.0%
! TAAGTATAAAAAGAGAAGTG+TGG + chr2_3:58987170-58987189 None:intergenic 25.0%
! GCAATTATCTAGATCAATAT+CGG + chr2_3:58987220-58987239 None:intergenic 25.0%
!!! TGATACGTTGATAATAACTA+CGG - chr2_3:58987393-58987412 Msa0302220:intron 25.0%
!!! GTGGTTTTAATATTTTCTTG+TGG + chr2_3:58987805-58987824 None:intergenic 25.0%
! CTACTAGTAGTTATTATCAA+CGG - chr2_3:58988027-58988046 Msa0302220:intron 25.0%
! AAAAACAGGCAAAAGATATT+AGG + chr2_3:58988069-58988088 None:intergenic 25.0%
! ATGTGTAGTATTAGGAATTT+AGG - chr2_3:58988191-58988210 Msa0302220:intron 25.0%
! TACTATACACTGTATCAATT+AGG + chr2_3:58988385-58988404 None:intergenic 25.0%
! AGAACATACAACTTAATGTA+AGG - chr2_3:58988592-58988611 Msa0302220:CDS 25.0%
! ATACAACTTAATGTAAGGAT+TGG - chr2_3:58988597-58988616 Msa0302220:CDS 25.0%
!! AAATGTATTCTACGTGTTTT+TGG - chr2_3:58988748-58988767 Msa0302220:CDS 25.0%
! AAATAATATGCCAGCAAAAA+TGG + chr2_3:58988943-58988962 None:intergenic 25.0%
ACATACAAATAATCGAAGTG+TGG - chr2_3:58984272-58984291 Msa0302220:three_prime_UTR 30.0%
CATACAAATAATCGAAGTGT+GGG - chr2_3:58984273-58984292 Msa0302220:three_prime_UTR 30.0%
GTAAGGTTAATCAGAAATAG+CGG + chr2_3:58984481-58984500 None:intergenic 30.0%
AAGATCTGTGAGAAAAAGTA+AGG + chr2_3:58984498-58984517 None:intergenic 30.0%
! ACGAAACCAACATTTTTGAA+TGG - chr2_3:58984558-58984577 Msa0302220:three_prime_UTR 30.0%
TACACTCCATTCAAAAATGT+TGG + chr2_3:58984567-58984586 None:intergenic 30.0%
AATGGAGTGTAACCATAATT+GGG - chr2_3:58984576-58984595 Msa0302220:three_prime_UTR 30.0%
AGAACTTACTAAAGTGTATC+TGG + chr2_3:58984605-58984624 None:intergenic 30.0%
! TTATTGGATTTTCTGTGATG+GGG - chr2_3:58984714-58984733 Msa0302220:intron 30.0%
!! TTTTCAGAGTTTGGTTCAAT+TGG - chr2_3:58984779-58984798 Msa0302220:intron 30.0%
AGAAGTGATATTTGAAGGAT+TGG - chr2_3:58984885-58984904 Msa0302220:intron 30.0%
!! AAAGTTTTGATAAGCTATCC+TGG - chr2_3:58985117-58985136 Msa0302220:intron 30.0%
CTTATATTCATAACTTCTCC+AGG + chr2_3:58985138-58985157 None:intergenic 30.0%
TGCAAATTATTATGCTTTCC+CGG - chr2_3:58985291-58985310 Msa0302220:intron 30.0%
TTGGTTTCATTTATTTGCAC+TGG - chr2_3:58985349-58985368 Msa0302220:intron 30.0%
!!! ACTGGATTTTCATTAGCTTT+AGG - chr2_3:58985367-58985386 Msa0302220:intron 30.0%
TTTACTTCCTATGATTGGAT+TGG - chr2_3:58985436-58985455 Msa0302220:intron 30.0%
AAACAAATAAGCTGAGTAGT+TGG + chr2_3:58985533-58985552 None:intergenic 30.0%
AATTCCAAAACCAATCCAAT+CGG + chr2_3:58985637-58985656 None:intergenic 30.0%
CTTTCAATTTCTTGTAGTGA+AGG - chr2_3:58985748-58985767 Msa0302220:intron 30.0%
TATTTGCAGTATATCCTGAT+GGG - chr2_3:58986096-58986115 Msa0302220:CDS 30.0%
GAGCATGCTTGTATTTAATA+GGG - chr2_3:58986347-58986366 Msa0302220:intron 30.0%
GTGATCATAACAAAAGTTGT+GGG - chr2_3:58986503-58986522 Msa0302220:intron 30.0%
!! AGATACTCTAAAATGAGTGA+TGG + chr2_3:58986718-58986737 None:intergenic 30.0%
!!! ATCACTCATTTTAGAGTATC+TGG - chr2_3:58986717-58986736 Msa0302220:intron 30.0%
TTAAACAACAAGTCTATAGC+AGG + chr2_3:58986787-58986806 None:intergenic 30.0%
ATAACTTTACTGAATGTCCT+TGG - chr2_3:58986900-58986919 Msa0302220:intron 30.0%
TAACTTTACTGAATGTCCTT+GGG - chr2_3:58986901-58986920 Msa0302220:intron 30.0%
CTAAGAATATGTTATGGACT+TGG - chr2_3:58987257-58987276 Msa0302220:intron 30.0%
ATAATGAGTAGATACGAAAG+TGG - chr2_3:58987479-58987498 Msa0302220:intron 30.0%
TAATGAGTAGATACGAAAGT+GGG - chr2_3:58987480-58987499 Msa0302220:intron 30.0%
TAGTTTAGGCATTACTCTTT+AGG - chr2_3:58987578-58987597 Msa0302220:intron 30.0%
!!! TATGAGAATGCTTTTTCTCT+TGG - chr2_3:58987651-58987670 Msa0302220:intron 30.0%
! ATTCAAAGTATTCAAGACGT+GGG + chr2_3:58987844-58987863 None:intergenic 30.0%
! TATTCAAAGTATTCAAGACG+TGG + chr2_3:58987845-58987864 None:intergenic 30.0%
GTGTTAAACTAGTAACTACT+AGG - chr2_3:58987958-58987977 Msa0302220:intron 30.0%
CATTTCACGTATTATCAGTA+TGG + chr2_3:58987989-58988008 None:intergenic 30.0%
!!! CTCTGTTTTAAGATTCCTTT+CGG - chr2_3:58988130-58988149 Msa0302220:intron 30.0%
CAACACTAATAGTGACAATT+GGG + chr2_3:58988219-58988238 None:intergenic 30.0%
ACAACACTAATAGTGACAAT+TGG + chr2_3:58988220-58988239 None:intergenic 30.0%
ACTATTAGTGTTGTCAATTG+TGG - chr2_3:58988226-58988245 Msa0302220:intron 30.0%
!!! GTTGAACAAACAGCTTTTTT+CGG + chr2_3:58988256-58988275 None:intergenic 30.0%
!! GACAGTTTGGAATATTGTTT+TGG - chr2_3:58988415-58988434 Msa0302220:intron 30.0%
TGTGATGTTTATATTGCAGA+AGG - chr2_3:58988456-58988475 Msa0302220:intron 30.0%
TTGTTGTATTCTTCTCTACA+TGG - chr2_3:58988695-58988714 Msa0302220:intron 30.0%
TATAAGCAAAAGGCAAAACT+TGG + chr2_3:58988856-58988875 None:intergenic 30.0%
! TATCATTTTGCCTTCTTTAC+TGG - chr2_3:58988909-58988928 Msa0302220:five_prime_UTR 30.0%
CGATTTAATTCATGTCGATC+AGG + chr2_3:58984231-58984250 None:intergenic 35.0%
!!! TACCTTTGAGCTGTTTTTGA+AGG + chr2_3:58984407-58984426 None:intergenic 35.0%
GAATGGAGTGTAACCATAAT+TGG - chr2_3:58984575-58984594 Msa0302220:three_prime_UTR 35.0%
ACTTACTAAAGTGTATCTGG+TGG + chr2_3:58984602-58984621 None:intergenic 35.0%
!!! TCCTATGATTGGATTGGTTT+TGG - chr2_3:58985442-58985461 Msa0302220:intron 35.0%
TCCAAAACCAATCCAATCAT+AGG + chr2_3:58985446-58985465 None:intergenic 35.0%
TTTACTTCATCCGATTGGAT+TGG - chr2_3:58985624-58985643 Msa0302220:intron 35.0%
TGACAAACAAATAAGCTGAG+TGG + chr2_3:58985725-58985744 None:intergenic 35.0%
TCAATTTCTTGTAGTGAAGG+AGG - chr2_3:58985751-58985770 Msa0302220:intron 35.0%
TGAAGTTCACTTCAGAGATA+TGG - chr2_3:58985830-58985849 Msa0302220:intron 35.0%
ATAGGATGTTACTGCAATAC+GGG + chr2_3:58985938-58985957 None:intergenic 35.0%
CATAGGATGTTACTGCAATA+CGG + chr2_3:58985939-58985958 None:intergenic 35.0%
TGAGAAAATCCAATGATGCA+CGG + chr2_3:58986024-58986043 None:intergenic 35.0%
GTATTTGCAGTATATCCTGA+TGG - chr2_3:58986095-58986114 Msa0302220:CDS 35.0%
ATATCTATTCTTCATCCTCC+TGG - chr2_3:58986128-58986147 Msa0302220:intron 35.0%
TATCTATTCTTCATCCTCCT+GGG - chr2_3:58986129-58986148 Msa0302220:intron 35.0%
TTGCAAGCTCATAACCATTT+GGG + chr2_3:58986160-58986179 None:intergenic 35.0%
! TTTTCACGTACTGTATGAAC+AGG + chr2_3:58986197-58986216 None:intergenic 35.0%
CGAGCATGCTTGTATTTAAT+AGG - chr2_3:58986346-58986365 Msa0302220:intron 35.0%
CGTGATCATAACAAAAGTTG+TGG - chr2_3:58986502-58986521 Msa0302220:intron 35.0%
!! ACTCTAAAATGAGTGATGGT+CGG + chr2_3:58986714-58986733 None:intergenic 35.0%
CTATAGCAGGTAAACATTAC+AGG + chr2_3:58986774-58986793 None:intergenic 35.0%
!! TAGACTTGTTGTTTAAGACC+TGG - chr2_3:58986791-58986810 Msa0302220:intron 35.0%
TTATGTTAAAAAGGCAAGCC+AGG + chr2_3:58986812-58986831 None:intergenic 35.0%
CAAGTATGTCAAAACACTCA+TGG + chr2_3:58986951-58986970 None:intergenic 35.0%
AGTATCATATCGATGCTTTC+TGG - chr2_3:58987056-58987075 Msa0302220:intron 35.0%
TGATCTAGATAATTGCGCAA+AGG - chr2_3:58987224-58987243 Msa0302220:intron 35.0%
CTAGTAAAACACTATGTCCT+TGG - chr2_3:58987292-58987311 Msa0302220:intron 35.0%
TGTAGCATTAAAGCAATCCA+AGG + chr2_3:58987312-58987331 None:intergenic 35.0%
TCGCTCATAAAACTCAAACT+TGG + chr2_3:58987522-58987541 None:intergenic 35.0%
!!! GTGTCGAGTGTTTTTTTGAA+GGG + chr2_3:58987739-58987758 None:intergenic 35.0%
! TTTTCTTGTGGGACTAAGTT+GGG + chr2_3:58987793-58987812 None:intergenic 35.0%
! ATTTTCTTGTGGGACTAAGT+TGG + chr2_3:58987794-58987813 None:intergenic 35.0%
GTGAAATGTCTTGTATGCAA+AGG - chr2_3:58988001-58988020 Msa0302220:intron 35.0%
CGAAAGGAATCTTAAAACAG+AGG + chr2_3:58988132-58988151 None:intergenic 35.0%
!!! TGTGTCATTTTGAGTACTGA+AGG - chr2_3:58988283-58988302 Msa0302220:intron 35.0%
!!! AATGTGTACTTTTAGGACAG+AGG + chr2_3:58988348-58988367 None:intergenic 35.0%
! CAACAGCAATGTGTACTTTT+AGG + chr2_3:58988355-58988374 None:intergenic 35.0%
GTACTTCAATCTTGACAGTT+TGG - chr2_3:58988402-58988421 Msa0302220:intron 35.0%
CTGCAATATAAACATCACAC+AGG + chr2_3:58988455-58988474 None:intergenic 35.0%
TGTTTATATTGCAGAAGGAG+TGG - chr2_3:58988461-58988480 Msa0302220:intron 35.0%
GAGAGACGATTTCAAGAAAA+AGG - chr2_3:58988492-58988511 Msa0302220:intron 35.0%
TTCACAATAGCAAGATACGA+GGG + chr2_3:58988568-58988587 None:intergenic 35.0%
!! TCGTATCTTGCTATTGTGAA+GGG - chr2_3:58988568-58988587 Msa0302220:CDS 35.0%
!!! GTGTTTTTGGCTAGTGTTTT+GGG - chr2_3:58988761-58988780 Msa0302220:CDS 35.0%
!!! TGTTTTTGGCTAGTGTTTTG+GGG - chr2_3:58988762-58988781 Msa0302220:CDS 35.0%
GGCAATTATACCAGTAAAGA+AGG + chr2_3:58988922-58988941 None:intergenic 35.0%
!!! GGTATAATTGCCATTTTTGC+TGG - chr2_3:58988930-58988949 Msa0302220:five_prime_UTR 35.0%
TCTCCAAACTCACTCTTTCA+TGG - chr2_3:58984362-58984381 Msa0302220:three_prime_UTR 40.0%
!!! CTTTGAGCTGTTTTTGAAGG+AGG + chr2_3:58984404-58984423 None:intergenic 40.0%
CTCCTTCAAAAACAGCTCAA+AGG - chr2_3:58984402-58984421 Msa0302220:three_prime_UTR 40.0%
!! GATTTTCTGTGATGGGGTTT+TGG - chr2_3:58984720-58984739 Msa0302220:intron 40.0%
!!! ATTGGTGGGTTTTCAGAGTT+TGG - chr2_3:58984770-58984789 Msa0302220:intron 40.0%
! CAGAGTTTGGTTCAATTGGT+TGG - chr2_3:58984783-58984802 Msa0302220:intron 40.0%
ATACAGATTATGGCCCTGTT+TGG - chr2_3:58984916-58984935 Msa0302220:intron 40.0%
CTCAGCTTATTTGTTTGCAC+TGG - chr2_3:58985537-58985556 Msa0302220:intron 40.0%
! ACTGGATTTTCCTTAGCTGT+AGG - chr2_3:58985555-58985574 Msa0302220:intron 40.0%
ACAAGCAAATCCTACAGCTA+AGG + chr2_3:58985568-58985587 None:intergenic 40.0%
!!! TCATCCGATTGGATTGGTTT+TGG - chr2_3:58985630-58985649 Msa0302220:intron 40.0%
! TCTGAAGTGAACTTCACTGA+TGG + chr2_3:58985826-58985845 None:intergenic 40.0%
CAGAGAGAAAACCAACCATT+GGG + chr2_3:58985859-58985878 None:intergenic 40.0%
TCAGAGAGAAAACCAACCAT+TGG + chr2_3:58985860-58985879 None:intergenic 40.0%
ATCTATTCTTCATCCTCCTG+GGG - chr2_3:58986130-58986149 Msa0302220:intron 40.0%
CTTGCAAGCTCATAACCATT+TGG + chr2_3:58986161-58986180 None:intergenic 40.0%
!! TGGGCTTTTCTTTGTTTACG+AGG - chr2_3:58986522-58986541 Msa0302220:intron 40.0%
!! GGGCTTTTCTTTGTTTACGA+GGG - chr2_3:58986523-58986542 Msa0302220:intron 40.0%
AAATTGGTCATCGGATACGT+TGG + chr2_3:58986614-58986633 None:intergenic 40.0%
!! TATGCATCCAAGAGTATCCT+AGG - chr2_3:58986677-58986696 Msa0302220:intron 40.0%
TGATACTCCTAGGATACTCT+TGG + chr2_3:58986687-58986706 None:intergenic 40.0%
TACTGAATGTCCTTGGGATA+TGG - chr2_3:58986907-58986926 Msa0302220:intron 40.0%
GTATGTCAAAACACTCATGG+TGG + chr2_3:58986948-58986967 None:intergenic 40.0%
TGGTCCTAATGATGAATCTC+CGG - chr2_3:58987076-58987095 Msa0302220:intron 40.0%
TTTGCCGGAGATTCATCATT+AGG + chr2_3:58987083-58987102 None:intergenic 40.0%
! AAAGAGAAGTGTGGTGAAGA+TGG + chr2_3:58987161-58987180 None:intergenic 40.0%
TTTGCGTCCTAGAGAAGTAA+AGG - chr2_3:58987190-58987209 Msa0302220:intron 40.0%
!!! TGCTTTTTCTCTTGGCATGT+TGG - chr2_3:58987659-58987678 Msa0302220:intron 40.0%
!!! TGTTTTTTTGAAGGGTGGGA+GGG + chr2_3:58987731-58987750 None:intergenic 40.0%
!!! CGAGTGTTTTTTTGAAGGGT+GGG + chr2_3:58987735-58987754 None:intergenic 40.0%
!!! TCGAGTGTTTTTTTGAAGGG+TGG + chr2_3:58987736-58987755 None:intergenic 40.0%
!!! GGTGTCGAGTGTTTTTTTGA+AGG + chr2_3:58987740-58987759 None:intergenic 40.0%
! GATTTTCATCCCTGAACTTG+TGG + chr2_3:58987771-58987790 None:intergenic 40.0%
! AGTATTCAAGACGTGGGTTA+GGG + chr2_3:58987838-58987857 None:intergenic 40.0%
AAGTATTCAAGACGTGGGTT+AGG + chr2_3:58987839-58987858 None:intergenic 40.0%
!!! TTTTAAGATTCCTTTCGGCC+AGG - chr2_3:58988135-58988154 Msa0302220:intron 40.0%
TCTATTGAGATCCCTACACT+TGG - chr2_3:58988162-58988181 Msa0302220:intron 40.0%
GAAATGTTGTGATTCACAGC+CGG - chr2_3:58988541-58988560 Msa0302220:intron 40.0%
TCACAATAGCAAGATACGAG+GGG + chr2_3:58988567-58988586 None:intergenic 40.0%
CTTCACAATAGCAAGATACG+AGG + chr2_3:58988569-58988588 None:intergenic 40.0%
!! CTCGTATCTTGCTATTGTGA+AGG - chr2_3:58988567-58988586 Msa0302220:CDS 40.0%
AGCAAGTCTACACAGATCAA+CGG + chr2_3:58988634-58988653 None:intergenic 40.0%
!! GATCTGTGTAGACTTGCTAT+TGG - chr2_3:58988636-58988655 Msa0302220:intron 40.0%
!!! CGTGTTTTTGGCTAGTGTTT+TGG - chr2_3:58988760-58988779 Msa0302220:CDS 40.0%
!!! GTTTTTGGCTAGTGTTTTGG+GGG - chr2_3:58988763-58988782 Msa0302220:CDS 40.0%
! TTGGGGGACTAGTAGTTTAT+TGG - chr2_3:58988779-58988798 Msa0302220:exon 40.0%
AGGCCATGAAAGAGTGAGTT+TGG + chr2_3:58984368-58984387 None:intergenic 45.0%
!!! TGAGCTGTTTTTGAAGGAGG+AGG + chr2_3:58984401-58984420 None:intergenic 45.0%
CTTTGTAAACATCCCGTCGA+TGG - chr2_3:58984515-58984534 Msa0302220:three_prime_UTR 45.0%
TGTATCTGGTGGCCCAATTA+TGG + chr2_3:58984591-58984610 None:intergenic 45.0%
GCTGAGTAGTTGGTCAAACT+CGG + chr2_3:58985523-58985542 None:intergenic 45.0%
! CTGAGTGGTTAGTCAAACTC+AGG + chr2_3:58985710-58985729 None:intergenic 45.0%
GGACTGTTTGGATAGTTCGA+CGG + chr2_3:58985802-58985821 None:intergenic 45.0%
!! TTCACTGATGGTGGACTGTT+TGG + chr2_3:58985814-58985833 None:intergenic 45.0%
GAAGTGAACTTCACTGATGG+TGG + chr2_3:58985823-58985842 None:intergenic 45.0%
TCAGAGATATGGCATCCCAA+TGG - chr2_3:58985841-58985860 Msa0302220:intron 45.0%
AGATATGGCATCCCAATGGT+TGG - chr2_3:58985845-58985864 Msa0302220:intron 45.0%
! GTTCCCGATACGTTTTGCAT+CGG - chr2_3:58985983-58986002 Msa0302220:intron 45.0%
CATCCGATGCAAAACGTATC+GGG + chr2_3:58985989-58986008 None:intergenic 45.0%
GCATCCGATGCAAAACGTAT+CGG + chr2_3:58985990-58986009 None:intergenic 45.0%
! GTAACTTGTCCGTGCATCAT+TGG - chr2_3:58986012-58986031 Msa0302220:intron 45.0%
TTGCAGTATATCCTGATGGG+CGG - chr2_3:58986099-58986118 Msa0302220:CDS 45.0%
GATACGTTGGAGATGCATCA+CGG + chr2_3:58986601-58986620 None:intergenic 45.0%
CGCTAGAGTAGAAGCTTTCT+CGG - chr2_3:58986741-58986760 Msa0302220:intron 45.0%
GCTAGAGTAGAAGCTTTCTC+GGG - chr2_3:58986742-58986761 Msa0302220:intron 45.0%
AAGTGGCATACCATATCCCA+AGG + chr2_3:58986920-58986939 None:intergenic 45.0%
ACTGCAGCTTCAACATTTGC+CGG + chr2_3:58987098-58987117 None:intergenic 45.0%
CGGTTTGCCTTTACTTCTCT+AGG + chr2_3:58987200-58987219 None:intergenic 45.0%
! TTTTCTCTTGGCATGTTGGC+AGG - chr2_3:58987663-58987682 Msa0302220:intron 45.0%
!!! GTGTTTTTTTGAAGGGTGGG+AGG + chr2_3:58987732-58987751 None:intergenic 45.0%
GGCAAGGGATGTGTAGTATT+AGG - chr2_3:58988183-58988202 Msa0302220:intron 45.0%
! AAAAGGTTAGCCGATGTGTG+CGG - chr2_3:58988509-58988528 Msa0302220:intron 45.0%
CTACACAGATCAACGGTAAC+AGG + chr2_3:58988627-58988646 None:intergenic 45.0%
!! ATTAATGAAAAATTAAAAAA+GGG + chr2_3:58984644-58984663 None:intergenic 5.0%
!! AATTAATGAAAAATTAAAAA+AGG + chr2_3:58984645-58984664 None:intergenic 5.0%
!!! CTTATTAATTTTAAAAAAAT+TGG + chr2_3:58986630-58986649 None:intergenic 5.0%
! TTGAAGGAGGAGGCTTGCTT+GGG + chr2_3:58984391-58984410 None:intergenic 50.0%
! TTTGAAGGAGGAGGCTTGCT+TGG + chr2_3:58984392-58984411 None:intergenic 50.0%
! GGTTTCGTCGACTAAACCAG+CGG + chr2_3:58984546-58984565 None:intergenic 50.0%
GTTCGACGGAAAGCTCATGA+TGG + chr2_3:58985788-58985807 None:intergenic 50.0%
! TGCAGTATATCCTGATGGGC+GGG - chr2_3:58986100-58986119 Msa0302220:CDS 50.0%
TAACCATTTGGGTCATCCCC+AGG + chr2_3:58986149-58986168 None:intergenic 50.0%
GGTCGGATACTGATACTCCT+AGG + chr2_3:58986697-58986716 None:intergenic 50.0%
!! CACTCATGGTGGACAAGAAG+TGG + chr2_3:58986937-58986956 None:intergenic 50.0%
TTCCACGTATGCTCTCTTGC+AGG - chr2_3:58987016-58987035 Msa0302220:CDS 50.0%
! TACCTGCAAGAGAGCATACG+TGG + chr2_3:58987021-58987040 None:intergenic 50.0%
ATGTTGGCAGGCTTGGCAAT+GGG - chr2_3:58987675-58987694 Msa0302220:intron 50.0%
TTCATCCCTGAACTTGTGGC+AGG + chr2_3:58987767-58987786 None:intergenic 50.0%
AATAGACATGCCTGGCCGAA+AGG + chr2_3:58988148-58988167 None:intergenic 50.0%
GGGATCTCAATAGACATGCC+TGG + chr2_3:58988156-58988175 None:intergenic 50.0%
TGAGATCCCTACACTTGGCA+AGG - chr2_3:58988167-58988186 Msa0302220:intron 50.0%
GAGATCCCTACACTTGGCAA+GGG - chr2_3:58988168-58988187 Msa0302220:intron 50.0%
CACATCCCTTGCCAAGTGTA+GGG + chr2_3:58988176-58988195 None:intergenic 50.0%
ACACATCCCTTGCCAAGTGT+AGG + chr2_3:58988177-58988196 None:intergenic 50.0%
AATAGCAAGATACGAGGGGC+CGG + chr2_3:58988563-58988582 None:intergenic 50.0%
ACCAGCGGAAAAGCCATCGA+CGG + chr2_3:58984531-58984550 None:intergenic 55.0%
GATATGCAAACCCGCCCATC+AGG + chr2_3:58986113-58986132 None:intergenic 55.0%
ATGAGCTTGCAAGTGAGCGC+TGG - chr2_3:58986168-58986187 Msa0302220:intron 55.0%
TCTTGGCATGTTGGCAGGCT+TGG - chr2_3:58987668-58987687 Msa0302220:intron 55.0%
CATGTTGGCAGGCTTGGCAA+TGG - chr2_3:58987674-58987693 Msa0302220:intron 55.0%
TGTTGGCAGGCTTGGCAATG+GGG - chr2_3:58987676-58987695 Msa0302220:intron 55.0%
CCTGAACTTGTGGCAGGAAG+GGG + chr2_3:58987761-58987780 None:intergenic 55.0%
CCCTGAACTTGTGGCAGGAA+GGG + chr2_3:58987762-58987781 None:intergenic 55.0%
CCCTTCCTGCCACAAGTTCA+GGG - chr2_3:58987759-58987778 Msa0302220:intron 55.0%
TCCCTGAACTTGTGGCAGGA+AGG + chr2_3:58987763-58987782 None:intergenic 55.0%
TGCAGAAGGAGTGGAGAGAC+AGG - chr2_3:58988470-58988489 Msa0302220:intron 55.0%
CCTGTGACTTCCGCACACAT+CGG + chr2_3:58988522-58988541 None:intergenic 55.0%
! AAGGAGGAGGCTTGCTTGGG+AGG + chr2_3:58984388-58984407 None:intergenic 60.0%
CCAGCGGAAAAGCCATCGAC+GGG + chr2_3:58984530-58984549 None:intergenic 60.0%
CCATTTGGGTCATCCCCAGG+AGG + chr2_3:58986146-58986165 None:intergenic 60.0%
CCTCCTGGGGATGACCCAAA+TGG - chr2_3:58986143-58986162 Msa0302220:intron 60.0%
GGCGTGTCGAGAATGAGACG+TGG - chr2_3:58987414-58987433 Msa0302220:intron 60.0%
GCTTGGCAATGGGGCAGGTA+GGG - chr2_3:58987685-58987704 Msa0302220:intron 60.0%
CCCCTTCCTGCCACAAGTTC+AGG - chr2_3:58987758-58987777 Msa0302220:intron 60.0%
!! GACGTGGGTTAGGGTGAGCA+GGG + chr2_3:58987829-58987848 None:intergenic 60.0%
!! AGACGTGGGTTAGGGTGAGC+AGG + chr2_3:58987830-58987849 None:intergenic 60.0%
CCGATGTGTGCGGAAGTCAC+AGG - chr2_3:58988519-58988538 Msa0302220:intron 60.0%
! CCCGTCGATGGCTTTTCCGC+TGG - chr2_3:58984527-58984546 Msa0302220:three_prime_UTR 65.0%
GGCTTGGCAATGGGGCAGGT+AGG - chr2_3:58987684-58987703 Msa0302220:intron 65.0%
GGCAATGGGGCAGGTAGGGA+CGG - chr2_3:58987689-58987708 Msa0302220:intron 65.0%
GCAATGGGGCAGGTAGGGAC+GGG - chr2_3:58987690-58987709 Msa0302220:intron 65.0%
GGGTTAGGGTGAGCAGGGTG+TGG + chr2_3:58987824-58987843 None:intergenic 65.0%
GGCAGGCTTGGCAATGGGGC+AGG - chr2_3:58987680-58987699 Msa0302220:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 58984188 58988976 58984188 ID=Msa0302220;Name=Msa0302220
chr2_3 mRNA 58984188 58988976 58984188 ID=Msa0302220-mRNA-1;Parent=Msa0302220;Name=Msa0302220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=193|1|1|1|1|1|6|424|166
chr2_3 exon 58984188 58984689 58984188 ID=Msa0302220-mRNA-1:exon:19024;Parent=Msa0302220-mRNA-1
chr2_3 exon 58986049 58986126 58986049 ID=Msa0302220-mRNA-1:exon:19023;Parent=Msa0302220-mRNA-1
chr2_3 exon 58986959 58987059 58986959 ID=Msa0302220-mRNA-1:exon:19022;Parent=Msa0302220-mRNA-1
chr2_3 exon 58987302 58987399 58987302 ID=Msa0302220-mRNA-1:exon:19021;Parent=Msa0302220-mRNA-1
chr2_3 exon 58988549 58988651 58988549 ID=Msa0302220-mRNA-1:exon:19020;Parent=Msa0302220-mRNA-1
chr2_3 exon 58988741 58988976 58988741 ID=Msa0302220-mRNA-1:exon:19019;Parent=Msa0302220-mRNA-1
chr2_3 five_prime_UTR 58988784 58988976 58988784 ID=Msa0302220-mRNA-1:five_prime_utr;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58988741 58988783 58988741 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58988549 58988651 58988549 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58987302 58987399 58987302 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58986959 58987059 58986959 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58986049 58986126 58986049 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 CDS 58984612 58984689 58984612 ID=Msa0302220-mRNA-1:cds;Parent=Msa0302220-mRNA-1
chr2_3 three_prime_UTR 58984188 58984611 58984188 ID=Msa0302220-mRNA-1:three_prime_utr;Parent=Msa0302220-mRNA-1
Gene Sequence

>Msa0302220

ATGGCCTCCCAAGCAAGCCTCCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACATCCCGTCGATGGCTTTTCCGCTGGTTTAGTCGACGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGGCCACCAGATACACTTTATGAAGGAGGATTTTTCAATGCCATCATGAGCTTTCCGTCGAACTATCCAAACAGTCCACCATCAGTGAAGTTCACTTCAGAGATATGGCATCCCAATGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTGAGTATCATATCGATGCTTTCTGGTCCTAATGATGAATCTCCGGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGACAGGAGAGACGATTTCAAGAAAAAGGTTAGCCGATGTGTGCGGAAGTCACAGGAAATGTTGTGA
Protein sequence

>Msa0302220

MASQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML*