AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378570 MtrunA17_Chr3g0131031 84.127 504 12 4 6 449 33 528 0.0 819
Msa0378570 MtrunA17_Chr8g0385271 70.080 498 81 4 7 444 34 523 0.0 670
Msa0378570 MtrunA17_Chr3g0135611 67.509 277 77 2 94 365 157 425 1.38e-125 372
Msa0378570 MtrunA17_Chr4g0008821 67.148 277 78 2 94 365 160 428 5.94e-125 371
Msa0378570 MtrunA17_Chr4g0045871 89.706 68 7 0 328 395 5 72 5.55e-35 125
Msa0378570 MtrunA17_Chr7g0235891 65.217 46 16 0 314 359 88 133 9.01e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378570 AT2G30390.2 81.897 348 60 2 103 448 176 522 0.0 564
Msa0378570 AT2G30390.1 82.319 345 52 2 104 448 177 512 0.0 561
Msa0378570 AT5G26030.1 68.539 267 76 1 100 366 162 420 2.67e-133 392
Msa0378570 AT5G26030.2 68.539 267 76 1 100 366 162 420 2.67e-133 392

Find 105 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATGTATTTACCTAAT+TGG 0.166560 3_1:+79403041 None:intergenic
TAGAATCTGGTATAGAAAAT+TGG 0.193496 3_1:-79402857 Msa0378570:CDS
CAGCATATGACTCGCAAAAT+AGG 0.241519 3_1:-79402410 Msa0378570:CDS
TCCCTTCACCCTTGCCTATC+AGG 0.242398 3_1:-79403308 Msa0378570:intron
GAATTCACTTATTTACTATA+TGG 0.252303 3_1:+79400758 None:intergenic
ACTATTGTCTCATCTGTATA+GGG 0.288809 3_1:+79403104 None:intergenic
TGTACGTTGGCATGCGTTAC+TGG 0.292975 3_1:-79404288 Msa0378570:CDS
GAATATTATCGCCCTCTCTT+AGG 0.311916 3_1:-79402245 Msa0378570:CDS
ACCCTCCTTCATTTCTGATT+TGG 0.315714 3_1:-79402808 Msa0378570:CDS
ACATATTGTGTAGATTAAAA+AGG 0.324340 3_1:-79403998 Msa0378570:intron
AGAATCTGGTATAGAAAATT+GGG 0.325244 3_1:-79402856 Msa0378570:CDS
CGGAAGTGTACAAGAGTTAT+TGG 0.329755 3_1:-79402433 Msa0378570:CDS
AACTATTGTCTCATCTGTAT+AGG 0.332380 3_1:+79403103 None:intergenic
TTCTGAGAGGTACAGATTGC+CGG 0.341894 3_1:+79407498 None:intergenic
GTATGCTGGCTGTTCCAATT+AGG 0.352649 3_1:-79403055 Msa0378570:intron
TGATGTTGAATACAAAGAAT+TGG 0.365400 3_1:-79402883 Msa0378570:CDS
CACATCATGATTATGTCATC+TGG 0.376301 3_1:+79400804 None:intergenic
AAAAGTACACTGCCTCTTTA+GGG 0.378371 3_1:+79403673 None:intergenic
AGACTTGAAGAAATCTCTTT+CGG 0.388879 3_1:-79404332 Msa0378570:CDS
TGGCTCAAGCTTACGTCTAC+TGG 0.395244 3_1:-79403917 Msa0378570:CDS
CGCCGGTGATAGTGTGGGAA+TGG 0.399628 3_1:-79402377 Msa0378570:CDS
AAAGAATTGGCTCTAGAATC+TGG 0.400419 3_1:-79402870 Msa0378570:CDS
GCCGGTGATAGTGTGGGAAT+GGG 0.419183 3_1:-79402376 Msa0378570:CDS
AGCATATGACTCGCAAAATA+GGG 0.434303 3_1:-79402409 Msa0378570:CDS
TGCACATCTTCTAGAGTCTC+TGG 0.435104 3_1:+79407234 None:intergenic
ACTGCCATGGCACCAGCATA+TGG 0.437930 3_1:+79402762 None:intergenic
CTTACATCTGATGATAAGAT+TGG 0.439061 3_1:-79407282 Msa0378570:CDS
TCCTCCATCTCTGCCTTGTA+AGG 0.440499 3_1:+79403379 None:intergenic
TTTAGTAGCTCGAACAGATC+AGG 0.450862 3_1:-79407322 Msa0378570:CDS
CACTGAGGAAGCTATTGAAC+AGG 0.452384 3_1:-79404257 Msa0378570:intron
TGGGGTGCCTCTTGCTTATG+TGG 0.465776 3_1:-79403416 Msa0378570:CDS
AGCACACAGTATTACCTTCA+TGG 0.466392 3_1:-79403764 Msa0378570:CDS
CAAAATTTCAATATTGTGCA+AGG 0.474841 3_1:+79400908 None:intergenic
TGGGGCCGTGTTCCTGCTCT+AGG 0.479445 3_1:-79402837 Msa0378570:CDS
TCAACGTGAAGGATACATAA+AGG 0.485704 3_1:-79403739 Msa0378570:CDS
ATTGAAAATTGTGGATAAAG+TGG 0.485887 3_1:+79403949 None:intergenic
ATGCCAACGTACACTTCAGC+AGG 0.486817 3_1:+79404298 None:intergenic
TTGAAAATTGTGGATAAAGT+GGG 0.490648 3_1:+79403950 None:intergenic
TAGACGTAAGCTTGAGCCAC+TGG 0.492475 3_1:+79403921 None:intergenic
GCCTCTTGCTTATGTGGAAG+AGG 0.493969 3_1:-79403410 Msa0378570:CDS
CTCCACTGTCTTTGAGAGCA+TGG 0.495279 3_1:+79402208 None:intergenic
TTATTCTTACAGAGTAGAGT+TGG 0.505538 3_1:-79403146 Msa0378570:intron
TCAATAGCTTCCTCAGTGAA+TGG 0.508166 3_1:+79404262 None:intergenic
CTTCTGCTCTGGAGCTCATG+TGG 0.509145 3_1:-79407469 Msa0378570:CDS
TTCAAGCCTCGAAGCTCGAC+AGG 0.509317 3_1:-79402739 Msa0378570:intron
TGTGCAAGGGAATGACTTGA+TGG 0.510991 3_1:+79400922 None:intergenic
ATCTGCCAAATCAGAAATGA+AGG 0.511624 3_1:+79402803 None:intergenic
AGAATACCTGTCGAGCTTCG+AGG 0.516022 3_1:+79402733 None:intergenic
TACCTGATAGGCAAGGGTGA+AGG 0.519996 3_1:+79403306 None:intergenic
GAAGTCGTTGAAACTACATA+AGG 0.522867 3_1:+79403648 None:intergenic
GCGATCTGAAGCAAAACCCT+TGG 0.524130 3_1:-79407388 Msa0378570:CDS
CCCCATTCCCACACTATCAC+CGG 0.525373 3_1:+79402375 None:intergenic
ACCTGATAGGCAAGGGTGAA+GGG 0.530104 3_1:+79403307 None:intergenic
CTCTGCCTTGTAAGGATCAC+CGG 0.531288 3_1:+79403387 None:intergenic
TGGCAGTCTTTGGTTCCGCT+CGG 0.531313 3_1:-79402453 Msa0378570:intron
GTCTACTGGAGAGTATATTC+CGG 0.534732 3_1:-79403903 Msa0378570:intron
GGAGTGTTATTGCTAAACCT+TGG 0.534970 3_1:-79407261 Msa0378570:CDS
GTGTTATTGCTAAACCTTGG+AGG 0.536763 3_1:-79407258 Msa0378570:CDS
CTGCCATGGCACCAGCATAT+GGG 0.537209 3_1:+79402763 None:intergenic
CTAGAGTCTCTGGACCTCCA+AGG 0.539949 3_1:+79407244 None:intergenic
CTTGCTTATGTGGAAGAGGC+CGG 0.540854 3_1:-79403406 Msa0378570:CDS
GATGAGACAATAGTTGAACT+TGG 0.541880 3_1:-79403095 Msa0378570:CDS
TGCCATCGCCGGTGATAGTG+TGG 0.545471 3_1:-79402383 Msa0378570:CDS
CACATGAGCTCCAGAGCAGA+AGG 0.547619 3_1:+79407470 None:intergenic
AAAAGGAGTGAAAAGTATGC+TGG 0.557081 3_1:-79403069 Msa0378570:CDS
TGATCCTTACAAGGCAGAGA+TGG 0.558244 3_1:-79403383 Msa0378570:CDS
CTGCTCTGGAGCTCATGTGG+AGG 0.561511 3_1:-79407466 Msa0378570:CDS
GAGGGTTCACATCCTAGAGC+AGG 0.569494 3_1:+79402825 None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG 0.570829 3_1:-79402345 Msa0378570:CDS
AGTGATTGGTTGGAAACCAA+GGG 0.571366 3_1:+79407372 None:intergenic
AAAATTTCAATATTGTGCAA+GGG 0.574118 3_1:+79400909 None:intergenic
AAAGGATGGAGTTACAAAGC+TGG 0.574958 3_1:-79403980 Msa0378570:CDS
GGAATGTGTGGATTTGATCA+TGG 0.578572 3_1:-79403359 Msa0378570:CDS
GGCAGAGATGGAGGAATGTG+TGG 0.580461 3_1:-79403371 Msa0378570:CDS
AAATAGGGAGTTGCCATCGC+CGG 0.581354 3_1:-79402394 Msa0378570:CDS
CTGGTTGATATTGAAAATTG+TGG 0.582519 3_1:+79403940 None:intergenic
GAGTGATTGGTTGGAAACCA+AGG 0.584680 3_1:+79407371 None:intergenic
AGAGGCCGGTGATCCTTACA+AGG 0.588173 3_1:-79403392 Msa0378570:CDS
TCTCCCATATGCTGGTGCCA+TGG 0.590481 3_1:-79402766 Msa0378570:CDS
ATTGAAAGTCTCCCATATGC+TGG 0.593938 3_1:-79402774 Msa0378570:CDS
TTCGAGGCTTGAAACTGCCA+TGG 0.598287 3_1:+79402749 None:intergenic
CCGGTGATAGTGTGGGAATG+GGG 0.604868 3_1:-79402375 Msa0378570:CDS
AGATTCATTCACCTAAGAGA+GGG 0.609385 3_1:+79402234 None:intergenic
TCCCACACTATCACCGGCGA+TGG 0.610674 3_1:+79402381 None:intergenic
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 3_1:-79403133 Msa0378570:CDS
CCTTCACGTTGATACCATGA+AGG 0.613635 3_1:+79403750 None:intergenic
TCCTTACAAGGCAGAGATGG+AGG 0.613774 3_1:-79403380 Msa0378570:CDS
GAGATTCATTCACCTAAGAG+AGG 0.614460 3_1:+79402233 None:intergenic
ATGACATAATCATGATGTGA+TGG 0.618035 3_1:-79400800 Msa0378570:three_prime_UTR
GCCTCTTCCACATAAGCAAG+AGG 0.629638 3_1:+79403409 None:intergenic
CACATCCTAGAGCAGGAACA+CGG 0.630017 3_1:+79402832 None:intergenic
CCTTCATGGTATCAACGTGA+AGG 0.631668 3_1:-79403750 Msa0378570:CDS
AGGGCGATAATATTCCCCAT+TGG 0.635517 3_1:+79402253 None:intergenic
TGCCAAATCAGAAATGAAGG+AGG 0.636616 3_1:+79402806 None:intergenic
GCCAAATCAGAAATGAAGGA+GGG 0.639074 3_1:+79402807 None:intergenic
AACCATGCTCTCAAAGACAG+TGG 0.641416 3_1:-79402210 Msa0378570:three_prime_UTR
GCCATCGCCGGTGATAGTGT+GGG 0.643544 3_1:-79402382 Msa0378570:CDS
TACACAACTCAGCAATGGAT+AGG 0.644578 3_1:-79407956 None:intergenic
TGAGAGGTACAGATTGCCGG+TGG 0.664746 3_1:+79407501 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.670362 3_1:-79403138 Msa0378570:intron
GAATCTGGTATAGAAAATTG+GGG 0.677200 3_1:-79402855 Msa0378570:CDS
GTCCCTGCTGAAGTGTACGT+TGG 0.678902 3_1:-79404301 Msa0378570:CDS
TGCCAACGTACACTTCAGCA+GGG 0.687637 3_1:+79404299 None:intergenic
AACTCTTGTACACTTCCGAG+CGG 0.698633 3_1:+79402438 None:intergenic
TTACTGGCATCCATTCACTG+AGG 0.806235 3_1:-79404272 Msa0378570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTATATTTACTTTTGC+AGG - chr3_1:79401169-79401188 Msa0378570:intron 15.0%
!! AAGGAAAATAAATAAATAAC+AGG + chr3_1:79401995-79402014 None:intergenic 15.0%
!! AAATATAAGTCATAATCAAA+AGG + chr3_1:79402014-79402033 None:intergenic 15.0%
!! AGGTATTAAAAATTGTAAAT+TGG - chr3_1:79402301-79402320 Msa0378570:CDS 15.0%
!! AAAAAAGTTACATCATTAAT+TGG - chr3_1:79402362-79402381 Msa0378570:CDS 15.0%
!!! ATTATTAACATGATTGATTT+TGG + chr3_1:79403768-79403787 None:intergenic 15.0%
!! TTAATAATCAGAATAATATG+TGG - chr3_1:79403780-79403799 Msa0378570:CDS 15.0%
!! ATAGGAAAATAATTATAATC+AGG + chr3_1:79404677-79404696 None:intergenic 15.0%
!! TTATGATTTGAATTATGAAT+TGG - chr3_1:79404878-79404897 Msa0378570:intron 15.0%
!!! TTTTTCAATTAAATTTGACA+TGG + chr3_1:79404986-79405005 None:intergenic 15.0%
!!! AAACAACACATTTTTTTTTT+GGG + chr3_1:79405104-79405123 None:intergenic 15.0%
!!! AAAACAACACATTTTTTTTT+TGG + chr3_1:79405105-79405124 None:intergenic 15.0%
!!! AATTGAAAGTATATTATCTT+TGG - chr3_1:79406226-79406245 Msa0378570:intron 15.0%
!! ATATTTCAACACAAATATTT+GGG + chr3_1:79406941-79406960 None:intergenic 15.0%
!! TATATTTCAACACAAATATT+TGG + chr3_1:79406942-79406961 None:intergenic 15.0%
!!! ATTACTTTGACTTTTTTTTA+AGG + chr3_1:79407859-79407878 None:intergenic 15.0%
!! TGATAATTAGTGATAAAATG+TGG + chr3_1:79401124-79401143 None:intergenic 20.0%
!!! CATTTTATCACTAATTATCA+AGG - chr3_1:79401124-79401143 Msa0378570:intron 20.0%
!! GCAAAAAGGTTAAATAAAAA+AGG + chr3_1:79401492-79401511 None:intergenic 20.0%
!! TGAAGAAAACTAAATATTCT+TGG + chr3_1:79401855-79401874 None:intergenic 20.0%
!! AATAAATAAATAACAGGAAG+TGG + chr3_1:79401989-79402008 None:intergenic 20.0%
!! ATTACACAGAAAATTGTTTA+AGG + chr3_1:79403260-79403279 None:intergenic 20.0%
!! ATTCATGATGAACAAATATT+TGG - chr3_1:79403815-79403834 Msa0378570:intron 20.0%
!!! TAAAAAGGTTTGGTTAATAT+GGG + chr3_1:79404016-79404035 None:intergenic 20.0%
!! CAATTAAAAGTGATCTAAAA+AGG + chr3_1:79404031-79404050 None:intergenic 20.0%
!!! CTTTTTAGATCACTTTTAAT+TGG - chr3_1:79404029-79404048 Msa0378570:intron 20.0%
!!! TGCTTTGTAATCTAAAATAA+AGG - chr3_1:79404589-79404608 Msa0378570:intron 20.0%
!! ACATATTGTGTAGATTAAAA+AGG - chr3_1:79404701-79404720 Msa0378570:intron 20.0%
!! ATTTGAAGAATATTTAACGT+GGG + chr3_1:79404837-79404856 None:intergenic 20.0%
!! TATTTGAAGAATATTTAACG+TGG + chr3_1:79404838-79404857 None:intergenic 20.0%
!!! TTTTTTTTTTGGGCATAAAT+TGG + chr3_1:79405094-79405113 None:intergenic 20.0%
!! AGAAAAAAAAATTACCTGAT+AGG + chr3_1:79405408-79405427 None:intergenic 20.0%
!! ATCTTTAGATGTTATTCATT+AGG - chr3_1:79405469-79405488 Msa0378570:intron 20.0%
!! AACTAATGTATTTACCTAAT+TGG + chr3_1:79405661-79405680 None:intergenic 20.0%
!!! TCTTTTCAATTAGATATAGT+TGG - chr3_1:79405986-79406005 Msa0378570:intron 20.0%
!! TATCATATTCATATGTTTCA+TGG + chr3_1:79406083-79406102 None:intergenic 20.0%
!!! TTGTAGTATTTGATCTATTT+TGG - chr3_1:79406135-79406154 Msa0378570:intron 20.0%
!! TGGAATTAATCTTTCTAATA+TGG - chr3_1:79406155-79406174 Msa0378570:intron 20.0%
!! GGAATTAATCTTTCTAATAT+GGG - chr3_1:79406156-79406175 Msa0378570:intron 20.0%
!! GAATTAATCTTTCTAATATG+GGG - chr3_1:79406157-79406176 Msa0378570:intron 20.0%
!!! TGCTTACTTTTATTTATGTT+TGG + chr3_1:79406655-79406674 None:intergenic 20.0%
!!! TATCCATTCTAAAATTATTG+TGG + chr3_1:79406818-79406837 None:intergenic 20.0%
!!! TAAGCAAATTTTGACTTTTT+AGG + chr3_1:79407070-79407089 None:intergenic 20.0%
!! CACAGTTTACATATTTAATA+CGG + chr3_1:79407307-79407326 None:intergenic 20.0%
!!! GTTGAAATTTTACAATCTTA+GGG - chr3_1:79407674-79407693 Msa0378570:intron 20.0%
!!! TTGAAATTTTACAATCTTAG+GGG - chr3_1:79407675-79407694 Msa0378570:intron 20.0%
!! ATTAAAAACCTATATACTGA+AGG + chr3_1:79407750-79407769 None:intergenic 20.0%
!! AAAATTTCAATATTGTGCAA+GGG + chr3_1:79407793-79407812 None:intergenic 20.0%
!! GAATTCACTTATTTACTATA+TGG + chr3_1:79407944-79407963 None:intergenic 20.0%
!! TGTGTTGTTATAATGAGAAA+CGG + chr3_1:79400775-79400794 None:intergenic 25.0%
! ATATTCAAGCACTAATTTAC+CGG - chr3_1:79400808-79400827 Msa0378570:three_prime_UTR 25.0%
!!! ATGGATTTTTTTTCTTGAGA+TGG + chr3_1:79400841-79400860 None:intergenic 25.0%
! TTTGTATGTTTAGAGAAAAG+GGG + chr3_1:79400916-79400935 None:intergenic 25.0%
! CTTTGTATGTTTAGAGAAAA+GGG + chr3_1:79400917-79400936 None:intergenic 25.0%
! ATAACTCTATCAAATAGTGT+TGG - chr3_1:79402231-79402250 Msa0378570:exon 25.0%
! GTTATCATCAAAACTTTCTA+AGG + chr3_1:79402280-79402299 None:intergenic 25.0%
!!! AGAAAGTTTTGATGATAACA+AGG - chr3_1:79402281-79402300 Msa0378570:CDS 25.0%
! TAATATTTGTTCAAGTGTAC+AGG - chr3_1:79402330-79402349 Msa0378570:CDS 25.0%
!!! TGATGTAACTTTTTTAACTG+TGG + chr3_1:79402357-79402376 None:intergenic 25.0%
!! ATAAGGAATGGATTTCAAAT+TGG - chr3_1:79402910-79402929 Msa0378570:CDS 25.0%
!! ATTTCAAATTGGTTCTTCAT+AGG - chr3_1:79402921-79402940 Msa0378570:CDS 25.0%
!!! CTGTGTAATTTTGTTTAGTT+AGG - chr3_1:79403271-79403290 Msa0378570:intron 25.0%
! TGTTAAGGAGAAATATTTGT+TGG - chr3_1:79403740-79403759 Msa0378570:CDS 25.0%
! ATAATCAGAATAATATGTGG+AGG - chr3_1:79403783-79403802 Msa0378570:CDS 25.0%
! GAAGATAGAGAAGTAATTAA+GGG + chr3_1:79403883-79403902 None:intergenic 25.0%
! AGAAGATAGAGAAGTAATTA+AGG + chr3_1:79403884-79403903 None:intergenic 25.0%
! CTATATATAGAGAGAAGTTA+TGG + chr3_1:79403959-79403978 None:intergenic 25.0%
!! CTAAAAAGGTTTGGTTAATA+TGG + chr3_1:79404017-79404036 None:intergenic 25.0%
! AAAAGTGATCTAAAAAGGTT+TGG + chr3_1:79404026-79404045 None:intergenic 25.0%
! TTAAAATACAAGTCCAATGT+TGG - chr3_1:79404088-79404107 Msa0378570:intron 25.0%
! CGGTAAAATTAAATTGCTTT+CGG + chr3_1:79404138-79404157 None:intergenic 25.0%
! CAATATAAAAATGCAAGAAG+CGG + chr3_1:79404158-79404177 None:intergenic 25.0%
! AATCATTTCAATCAAGCTTT+CGG - chr3_1:79404200-79404219 Msa0378570:intron 25.0%
! AGGTAATAATAGAATGAATG+AGG + chr3_1:79404313-79404332 None:intergenic 25.0%
! TCTACACAATATGTTTCAAT+AGG + chr3_1:79404695-79404714 None:intergenic 25.0%
! ATTGTGTAGATTAAAAAGGA+TGG - chr3_1:79404705-79404724 Msa0378570:intron 25.0%
! TTGAAAATTGTGGATAAAGT+GGG + chr3_1:79404752-79404771 None:intergenic 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr3_1:79404753-79404772 None:intergenic 25.0%
!! GATTCATGTGATAACAATTT+TGG - chr3_1:79405131-79405150 Msa0378570:intron 25.0%
!!! ATGATATTTTTTAGTGCACA+TGG - chr3_1:79405263-79405282 Msa0378570:intron 25.0%
!!! TGATATTTTTTAGTGCACAT+GGG - chr3_1:79405264-79405283 Msa0378570:intron 25.0%
! ATAGTTGAACTTGGAAAAAA+AGG - chr3_1:79405613-79405632 Msa0378570:intron 25.0%
! AACAAAACAAAATACTAGTC+AGG + chr3_1:79405733-79405752 None:intergenic 25.0%
! TGATGTTGAATACAAAGAAT+TGG - chr3_1:79405816-79405835 Msa0378570:intron 25.0%
! TAGAATCTGGTATAGAAAAT+TGG - chr3_1:79405842-79405861 Msa0378570:intron 25.0%
! AGAATCTGGTATAGAAAATT+GGG - chr3_1:79405843-79405862 Msa0378570:intron 25.0%
!!! TGTTTTTAGTCTCAAAAGAT+CGG - chr3_1:79406047-79406066 Msa0378570:intron 25.0%
! ACAAGACTAAAACTAAAACA+AGG + chr3_1:79406119-79406138 None:intergenic 25.0%
! AACATGTTTGTTTAAATCTC+TGG - chr3_1:79406180-79406199 Msa0378570:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG + chr3_1:79407080-79407099 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr3_1:79407006-79407025 None:intergenic 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr3_1:79407080-79407099 Msa0378570:intron 25.0%
!!! ACTCATTTTAGAGTTAGTTA+AGG - chr3_1:79407119-79407138 Msa0378570:intron 25.0%
!!! CTCATTTTAGAGTTAGTTAA+GGG - chr3_1:79407120-79407139 Msa0378570:intron 25.0%
! TTACAAATTGTTGAGAAACA+TGG + chr3_1:79407270-79407289 None:intergenic 25.0%
! AAATATGTAAACTGTGAACT+TGG - chr3_1:79407311-79407330 Msa0378570:CDS 25.0%
!!! CAAATTTTTTCACTTGTCTT+CGG + chr3_1:79407521-79407540 None:intergenic 25.0%
!! TGGTGCAAAATAAATTTTTC+AGG - chr3_1:79407620-79407639 Msa0378570:intron 25.0%
!! GGTGCAAAATAAATTTTTCA+GGG - chr3_1:79407621-79407640 Msa0378570:intron 25.0%
! TGCAAATAAACTGGTATAAT+TGG - chr3_1:79407652-79407671 Msa0378570:intron 25.0%
!! GGTTGAAATTTTACAATCTT+AGG - chr3_1:79407673-79407692 Msa0378570:intron 25.0%
!! TGAAATTTTACAATCTTAGG+GGG - chr3_1:79407676-79407695 Msa0378570:intron 25.0%
!!! ATTTTGATCCTTCAGTATAT+AGG - chr3_1:79407739-79407758 Msa0378570:intron 25.0%
! CAAAATTTCAATATTGTGCA+AGG + chr3_1:79407794-79407813 None:intergenic 25.0%
!! TGCACAATATTGAAATTTTG+AGG - chr3_1:79407794-79407813 Msa0378570:intron 25.0%
!! GCACAATATTGAAATTTTGA+GGG - chr3_1:79407795-79407814 Msa0378570:intron 25.0%
!! CACAATATTGAAATTTTGAG+GGG - chr3_1:79407796-79407815 Msa0378570:intron 25.0%
GCTTTGTATGTTTAGAGAAA+AGG + chr3_1:79400918-79400937 None:intergenic 30.0%
!! AAAAAGCACATGTTTTCAGT+GGG - chr3_1:79401351-79401370 Msa0378570:intron 30.0%
CTTACATCTGATGATAAGAT+TGG - chr3_1:79401417-79401436 Msa0378570:intron 30.0%
! TGTAAAAGCTAGAGTATTAC+CGG + chr3_1:79401519-79401538 None:intergenic 30.0%
TTTACAGTGTTGTCAAATAG+TGG - chr3_1:79401562-79401581 Msa0378570:intron 30.0%
ACAGCAAAAATGACAATCTT+AGG + chr3_1:79401782-79401801 None:intergenic 30.0%
! TATTTTATGTCCAATCTCAC+AGG - chr3_1:79401815-79401834 Msa0378570:intron 30.0%
! TAGTTTTCTTCAAAAGCCAT+TGG - chr3_1:79401863-79401882 Msa0378570:intron 30.0%
TGAACTAATCATGTTTGAGT+AGG - chr3_1:79402079-79402098 Msa0378570:intron 30.0%
GAAAGAATAGCACAATGATA+TGG - chr3_1:79402197-79402216 Msa0378570:three_prime_UTR 30.0%
CATATATGTTCCTTTGGATA+AGG - chr3_1:79402893-79402912 Msa0378570:CDS 30.0%
TCTTTCACACCTCTATATAA+AGG - chr3_1:79403030-79403049 Msa0378570:intron 30.0%
AACACTTGATATACAATCAG+AGG + chr3_1:79403234-79403253 None:intergenic 30.0%
CACATAATGCTACTATTTGA+AGG + chr3_1:79403670-79403689 None:intergenic 30.0%
TAACAGTTACTGCATAAAAG+TGG + chr3_1:79403725-79403744 None:intergenic 30.0%
! CTTTTATGCAGTAACTGTTA+AGG - chr3_1:79403725-79403744 Msa0378570:CDS 30.0%
CATGATGAACAAATATTTGG+TGG - chr3_1:79403818-79403837 Msa0378570:intron 30.0%
! TGAACAAATATTTGGTGGTT+TGG - chr3_1:79403823-79403842 Msa0378570:intron 30.0%
TCTCTATCTTCTTCTGATAT+AGG - chr3_1:79403892-79403911 Msa0378570:intron 30.0%
ATAAGTATCTAATAGGGTGT+GGG + chr3_1:79403990-79404009 None:intergenic 30.0%
TATAAGTATCTAATAGGGTG+TGG + chr3_1:79403991-79404010 None:intergenic 30.0%
GGGCTTATAAGTATCTAATA+GGG + chr3_1:79403996-79404015 None:intergenic 30.0%
TGGGCTTATAAGTATCTAAT+AGG + chr3_1:79403997-79404016 None:intergenic 30.0%
TAATTGGACTTCAACTTAAG+TGG - chr3_1:79404045-79404064 Msa0378570:intron 30.0%
TGAAATGATTGGAAAGAGTA+AGG + chr3_1:79404190-79404209 None:intergenic 30.0%
GAAAGCTTGATTGAAATGAT+TGG + chr3_1:79404201-79404220 None:intergenic 30.0%
AGTCAATAGTAGAATCTCAT+TGG + chr3_1:79404240-79404259 None:intergenic 30.0%
AGACTTGAAGAAATCTCTTT+CGG - chr3_1:79404367-79404386 Msa0378570:intron 30.0%
! CTGGTTGATATTGAAAATTG+TGG + chr3_1:79404762-79404781 None:intergenic 30.0%
! CAATTTTCAATATCAACCAG+TGG - chr3_1:79404762-79404781 Msa0378570:intron 30.0%
TGGGTAATAAAAGTAATCAC+CGG + chr3_1:79404818-79404837 None:intergenic 30.0%
! TATTCCTGTTTCTCTTTGTT+AGG - chr3_1:79405155-79405174 Msa0378570:intron 30.0%
! ATTCCTGTTTCTCTTTGTTA+GGG - chr3_1:79405156-79405175 Msa0378570:intron 30.0%
! TAATTCCAAGTAATTTGTGC+AGG - chr3_1:79405238-79405257 Msa0378570:intron 30.0%
!!! GATATTTTTTAGTGCACATG+GGG - chr3_1:79405265-79405284 Msa0378570:intron 30.0%
AAAAATTACCTGATAGGCAA+GGG + chr3_1:79405402-79405421 None:intergenic 30.0%
AAAAAATTACCTGATAGGCA+AGG + chr3_1:79405403-79405422 None:intergenic 30.0%
! AACAGTTCATGAAGTTTTCT+TGG - chr3_1:79405504-79405523 Msa0378570:intron 30.0%
TTATTCTTACAGAGTAGAGT+TGG - chr3_1:79405553-79405572 Msa0378570:intron 30.0%
ACTATTGTCTCATCTGTATA+GGG + chr3_1:79405598-79405617 None:intergenic 30.0%
AACTATTGTCTCATCTGTAT+AGG + chr3_1:79405599-79405618 None:intergenic 30.0%
GAATCTGGTATAGAAAATTG+GGG - chr3_1:79405844-79405863 Msa0378570:intron 30.0%
!! TTGTTTAAATCTCTGGAATC+TGG - chr3_1:79406187-79406206 Msa0378570:intron 30.0%
ATATTATCTTTGGCAGTCTT+TGG - chr3_1:79406236-79406255 Msa0378570:intron 30.0%
!! TGATAGTGTTTTTCACCAAT+GGG - chr3_1:79406431-79406450 Msa0378570:intron 30.0%
!! TTCAGTTCAATTTTGATCAG+TGG - chr3_1:79406522-79406541 Msa0378570:intron 30.0%
! AGTTTTTCTCTCTACTTTCA+TGG - chr3_1:79407241-79407260 Msa0378570:CDS 30.0%
CACTTCAAATTAAGTTCTCA+GGG + chr3_1:79407419-79407438 None:intergenic 30.0%
TCACTTCAAATTAAGTTCTC+AGG + chr3_1:79407420-79407439 None:intergenic 30.0%
!! CACTTTTAAGAAAGTAGAAC+CGG - chr3_1:79407477-79407496 Msa0378570:CDS 30.0%
GAAGGTGAGATAAGAATAAT+TGG - chr3_1:79407564-79407583 Msa0378570:intron 30.0%
ATACTGAAGGATCAAAATCA+GGG + chr3_1:79407737-79407756 None:intergenic 30.0%
TATACTGAAGGATCAAAATC+AGG + chr3_1:79407738-79407757 None:intergenic 30.0%
ATGACATAATCATGATGTGA+TGG - chr3_1:79407899-79407918 Msa0378570:intron 30.0%
! TTCTTGAGATGGATTTGAAC+CGG + chr3_1:79400830-79400849 None:intergenic 35.0%
TGTGGCATAAAAAATGCATG+AGG + chr3_1:79401106-79401125 None:intergenic 35.0%
! GCTGCTATGTAATTTTTCAC+AGG + chr3_1:79401276-79401295 None:intergenic 35.0%
!!! ACATGTGCTTTTTGAGTGAT+TGG + chr3_1:79401344-79401363 None:intergenic 35.0%
!! CAAAAAGCACATGTTTTCAG+TGG - chr3_1:79401350-79401369 Msa0378570:intron 35.0%
! ATTTAACCTTTTTGCAGACC+CGG - chr3_1:79401497-79401516 Msa0378570:intron 35.0%
! GTAAAAGCTAGAGTATTACC+GGG + chr3_1:79401518-79401537 None:intergenic 35.0%
ACAATGCTATAGCTGCTATT+TGG + chr3_1:79401666-79401685 None:intergenic 35.0%
!!! GACAACACTGCTTTTTTATC+CGG - chr3_1:79401733-79401752 Msa0378570:intron 35.0%
! TTTTATCCGGCTATTCCTTT+AGG - chr3_1:79401746-79401765 Msa0378570:intron 35.0%
CGTATAATATCCTGTGAGAT+TGG + chr3_1:79401828-79401847 None:intergenic 35.0%
CCTTAGAACAGATACAAACT+GGG + chr3_1:79401889-79401908 None:intergenic 35.0%
CCAGTTTGTATCTGTTCTAA+GGG - chr3_1:79401887-79401906 Msa0378570:intron 35.0%
GACTATAGAATAACAAAGCC+TGG + chr3_1:79402112-79402131 None:intergenic 35.0%
TGAAGCTTAGATGATTCTGA+AGG - chr3_1:79402417-79402436 Msa0378570:CDS 35.0%
AAAACACAGCAGAAAATCAG+TGG - chr3_1:79402704-79402723 Msa0378570:intron 35.0%
AAATCAGTGGAACATTGCAA+CGG - chr3_1:79402717-79402736 Msa0378570:intron 35.0%
!! GTCATTTCAAAGGTGTTTGA+AGG - chr3_1:79402739-79402758 Msa0378570:intron 35.0%
AAGAAAACAGCTCCAGAATA+CGG - chr3_1:79402861-79402880 Msa0378570:CDS 35.0%
ATCCAAAGGAACATATATGC+AGG + chr3_1:79402892-79402911 None:intergenic 35.0%
ATGTTCCTTTGGATAAGGAA+TGG - chr3_1:79402898-79402917 Msa0378570:CDS 35.0%
GAAATCCATTCCTTATCCAA+AGG + chr3_1:79402906-79402925 None:intergenic 35.0%
CAATGATCTATTGCCTGATT+TGG + chr3_1:79402954-79402973 None:intergenic 35.0%
CAAATCAGGCAATAGATCAT+TGG - chr3_1:79402952-79402971 Msa0378570:intron 35.0%
GTCTTCACTCCTTTATATAG+AGG + chr3_1:79403042-79403061 None:intergenic 35.0%
CAAATCAGATACAGACTCAA+TGG + chr3_1:79403200-79403219 None:intergenic 35.0%
TTGATTGTGTTCTTGAGCAA+AGG - chr3_1:79403329-79403348 Msa0378570:CDS 35.0%
TACTCTTAGTGAAATCTCCT+TGG - chr3_1:79403423-79403442 Msa0378570:CDS 35.0%
ACGACACAAAGCAATTATAC+TGG + chr3_1:79403491-79403510 None:intergenic 35.0%
TGATCAGAATCTAAATGCAG+CGG + chr3_1:79403539-79403558 None:intergenic 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG - chr3_1:79403589-79403608 Msa0378570:intron 35.0%
AGGTGAGAAAAACACAAGAA+GGG + chr3_1:79403650-79403669 None:intergenic 35.0%
AAGGTGAGAAAAACACAAGA+AGG + chr3_1:79403651-79403670 None:intergenic 35.0%
TCTCTCTATATATAGAACCC+TGG - chr3_1:79403964-79403983 Msa0378570:CDS 35.0%
TTGGATCATCAATCCAACAT+TGG + chr3_1:79404104-79404123 None:intergenic 35.0%
GCTTTCGGAGTAAATATTGT+TGG + chr3_1:79404123-79404142 None:intergenic 35.0%
TTGATAAAGATTATGCCACC+AGG - chr3_1:79404514-79404533 Msa0378570:intron 35.0%
TGATAAAGATTATGCCACCA+GGG - chr3_1:79404515-79404534 Msa0378570:intron 35.0%
TCAACGTGAAGGATACATAA+AGG - chr3_1:79404960-79404979 Msa0378570:intron 35.0%
! AAAAGTACACTGCCTCTTTA+GGG + chr3_1:79405029-79405048 None:intergenic 35.0%
! AAAAAGTACACTGCCTCTTT+AGG + chr3_1:79405030-79405049 None:intergenic 35.0%
GAAGTCGTTGAAACTACATA+AGG + chr3_1:79405054-79405073 None:intergenic 35.0%
ATGTAGTTTCAACGACTTCA+TGG - chr3_1:79405055-79405074 Msa0378570:intron 35.0%
AATCCCTAACAAAGAGAAAC+AGG + chr3_1:79405162-79405181 None:intergenic 35.0%
! TGAGTTGCATTTTTCATTGC+TGG - chr3_1:79405203-79405222 Msa0378570:intron 35.0%
GATGAGACAATAGTTGAACT+TGG - chr3_1:79405604-79405623 Msa0378570:intron 35.0%
! AAAAGGAGTGAAAAGTATGC+TGG - chr3_1:79405630-79405649 Msa0378570:intron 35.0%
CTAGTCAGGTCTAAGAAAAA+GGG + chr3_1:79405719-79405738 None:intergenic 35.0%
ACTAGTCAGGTCTAAGAAAA+AGG + chr3_1:79405720-79405739 None:intergenic 35.0%
!! AAAGAATTGGCTCTAGAATC+TGG - chr3_1:79405829-79405848 Msa0378570:intron 35.0%
ATCTGCCAAATCAGAAATGA+AGG + chr3_1:79405899-79405918 None:intergenic 35.0%
AGCATATGACTCGCAAAATA+GGG - chr3_1:79406290-79406309 Msa0378570:intron 35.0%
!! TGACAAAAAGTGCTGAAACT+TGG - chr3_1:79406349-79406368 Msa0378570:intron 35.0%
!! AAAAGTGCTGAAACTTGGAA+TGG - chr3_1:79406354-79406373 Msa0378570:intron 35.0%
CATTGGTGAAAAACACTATC+AGG + chr3_1:79406432-79406451 None:intergenic 35.0%
!! CTGATAGTGTTTTTCACCAA+TGG - chr3_1:79406430-79406449 Msa0378570:intron 35.0%
! GATAGTGTTTTTCACCAATG+GGG - chr3_1:79406432-79406451 Msa0378570:intron 35.0%
AGATTCATTCACCTAAGAGA+GGG + chr3_1:79406468-79406487 None:intergenic 35.0%
!! GCGCCACAATAATTTTAGAA+TGG - chr3_1:79406812-79406831 Msa0378570:intron 35.0%
ATGTATGTGGTCTACAATGT+AGG + chr3_1:79407032-79407051 None:intergenic 35.0%
ATGATCAAGACTTTAGCACA+TGG + chr3_1:79407337-79407356 None:intergenic 35.0%
TACTGAAGGATCAAAATCAG+GGG + chr3_1:79407736-79407755 None:intergenic 35.0%
!! TTTTGAGGGGTTGTATTAAG+TGG - chr3_1:79407809-79407828 Msa0378570:intron 35.0%
CACATCATGATTATGTCATC+TGG + chr3_1:79407898-79407917 None:intergenic 35.0%
AGATCGCAGTGAAGAAAAAC+TGG + chr3_1:79401298-79401317 None:intergenic 40.0%
! AGTGATTGGTTGGAAACCAA+GGG + chr3_1:79401330-79401349 None:intergenic 40.0%
!!! GTGCTTTTTGAGTGATTGGT+TGG + chr3_1:79401340-79401359 None:intergenic 40.0%
TTTAGTAGCTCGAACAGATC+AGG - chr3_1:79401377-79401396 Msa0378570:intron 40.0%
! GGAGTGTTATTGCTAAACCT+TGG - chr3_1:79401438-79401457 Msa0378570:intron 40.0%
! GTGTTATTGCTAAACCTTGG+AGG - chr3_1:79401441-79401460 Msa0378570:intron 40.0%
TTAGGTTCATCACGACCTAA+AGG + chr3_1:79401764-79401783 None:intergenic 40.0%
CCCAGTTTGTATCTGTTCTA+AGG - chr3_1:79401886-79401905 Msa0378570:intron 40.0%
CCCTTAGAACAGATACAAAC+TGG + chr3_1:79401890-79401909 None:intergenic 40.0%
GCATCAGTTATACGTCTAAG+TGG + chr3_1:79401957-79401976 None:intergenic 40.0%
TAGACGTATAACTGATGCAC+AGG - chr3_1:79401959-79401978 Msa0378570:intron 40.0%
!! CTTCAGAAGCACTATTCTTC+AGG + chr3_1:79402486-79402505 None:intergenic 40.0%
! ATAGTGCTTCTGAAGACAAG+AGG - chr3_1:79402491-79402510 Msa0378570:intron 40.0%
! TTCTTCAGCTTCTGATGATG+TGG + chr3_1:79402525-79402544 None:intergenic 40.0%
ATCTTCAGCTTCTGGTGAAA+TGG + chr3_1:79402618-79402637 None:intergenic 40.0%
CATTGCAACGGTCATTTCAA+AGG - chr3_1:79402729-79402748 Msa0378570:intron 40.0%
! TGTTTTCTTGTCTTCTAGCG+TGG + chr3_1:79402850-79402869 None:intergenic 40.0%
CATAGGACAACAACCAAATC+AGG - chr3_1:79402938-79402957 Msa0378570:intron 40.0%
AAGCTTCAACAACGACTCTT+TGG - chr3_1:79402984-79403003 Msa0378570:intron 40.0%
! GGAGTGAAGACTTAGAGTTT+TGG - chr3_1:79403051-79403070 Msa0378570:intron 40.0%
GAACAATTTCAGCAGAGGTT+TGG + chr3_1:79403123-79403142 None:intergenic 40.0%
ATGCAGAACAATTTCAGCAG+AGG + chr3_1:79403128-79403147 None:intergenic 40.0%
! AAATCTCCTTGGAAGTGCAA+GGG - chr3_1:79403434-79403453 Msa0378570:CDS 40.0%
TGAGAAAAACACAAGAAGGG+GGG + chr3_1:79403647-79403666 None:intergenic 40.0%
GTGAGAAAAACACAAGAAGG+GGG + chr3_1:79403648-79403667 None:intergenic 40.0%
GGTGAGAAAAACACAAGAAG+GGG + chr3_1:79403649-79403668 None:intergenic 40.0%
!! GTGGTTCTAACTACTATTGC+TGG + chr3_1:79403706-79403725 None:intergenic 40.0%
! AGAATGTGTGTTGATCTGGA+AGG + chr3_1:79403849-79403868 None:intergenic 40.0%
! AGAGAGAATGTGTGTTGATC+TGG + chr3_1:79403853-79403872 None:intergenic 40.0%
GATTGGAAAGAGTAAGGATG+AGG + chr3_1:79404184-79404203 None:intergenic 40.0%
TGCAGAGGAGATCATTAGAA+GGG + chr3_1:79404339-79404358 None:intergenic 40.0%
TCAATAGCTTCCTCAGTGAA+TGG + chr3_1:79404440-79404459 None:intergenic 40.0%
CAGGTTTCAACAATGTGATC+AGG + chr3_1:79404658-79404677 None:intergenic 40.0%
AAAGGATGGAGTTACAAAGC+TGG - chr3_1:79404719-79404738 Msa0378570:intron 40.0%
! GTCTACTGGAGAGTATATTC+CGG - chr3_1:79404796-79404815 Msa0378570:intron 40.0%
TATGAATTGGTCCTTCAGAG+AGG - chr3_1:79404891-79404910 Msa0378570:intron 40.0%
TAGATACTCATCCTCTCTGA+AGG + chr3_1:79404905-79404924 None:intergenic 40.0%
AGCACACAGTATTACCTTCA+TGG - chr3_1:79404935-79404954 Msa0378570:intron 40.0%
CATGACCTGCACAAATTACT+TGG + chr3_1:79405246-79405265 None:intergenic 40.0%
GGAATGTGTGGATTTGATCA+TGG - chr3_1:79405340-79405359 Msa0378570:intron 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr3_1:79405580-79405599 None:intergenic 40.0%
ACCCTCCTTCATTTCTGATT+TGG - chr3_1:79405891-79405910 Msa0378570:intron 40.0%
GCCAAATCAGAAATGAAGGA+GGG + chr3_1:79405895-79405914 None:intergenic 40.0%
TGCCAAATCAGAAATGAAGG+AGG + chr3_1:79405896-79405915 None:intergenic 40.0%
ATTGAAAGTCTCCCATATGC+TGG - chr3_1:79405925-79405944 Msa0378570:intron 40.0%
! CGGAAGTGTACAAGAGTTAT+TGG - chr3_1:79406266-79406285 Msa0378570:intron 40.0%
CAGCATATGACTCGCAAAAT+AGG - chr3_1:79406289-79406308 Msa0378570:intron 40.0%
GAATATTATCGCCCTCTCTT+AGG - chr3_1:79406454-79406473 Msa0378570:intron 40.0%
GAGATTCATTCACCTAAGAG+AGG + chr3_1:79406469-79406488 None:intergenic 40.0%
GTGTTGAAATATACTCCCTC+CGG - chr3_1:79406949-79406968 Msa0378570:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr3_1:79407084-79407103 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr3_1:79407083-79407102 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr3_1:79407083-79407102 Msa0378570:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr3_1:79407084-79407103 Msa0378570:intron 40.0%
AGTATAACAACTACTCCCTC+CGG + chr3_1:79407102-79407121 None:intergenic 40.0%
CTCAAAGTGAAACAACATGC+TGG - chr3_1:79407600-79407619 Msa0378570:intron 40.0%
GTGTGCAAGTGCAAATAAAC+TGG - chr3_1:79407643-79407662 Msa0378570:intron 40.0%
AGTCTAGCAGGATCTTGAGA+TGG + chr3_1:79400860-79400879 None:intergenic 45.0%
! AGACAGAAAGTTGATCGCCT+AGG + chr3_1:79400993-79401012 None:intergenic 45.0%
! TTCTGAGAGGTACAGATTGC+CGG + chr3_1:79401204-79401223 None:intergenic 45.0%
!! GCAGAAGGACTTTTTCTGAG+AGG + chr3_1:79401217-79401236 None:intergenic 45.0%
CAGAAAAAGTCCTTCTGCTC+TGG - chr3_1:79401219-79401238 Msa0378570:intron 45.0%
! GAGTGATTGGTTGGAAACCA+AGG + chr3_1:79401331-79401350 None:intergenic 45.0%
!! TGCACATCTTCTAGAGTCTC+TGG + chr3_1:79401468-79401487 None:intergenic 45.0%
GTATTACCGGGTCTGCAAAA+AGG + chr3_1:79401506-79401525 None:intergenic 45.0%
TCACGACCTAAAGGAATAGC+CGG + chr3_1:79401755-79401774 None:intergenic 45.0%
ACAGATACAAACTGGGCCAA+TGG + chr3_1:79401882-79401901 None:intergenic 45.0%
AGAGAAGGCTACGCTTCAAT+TGG - chr3_1:79401921-79401940 Msa0378570:intron 45.0%
GTTTGAGTAGGAGTTGTTCC+AGG - chr3_1:79402091-79402110 Msa0378570:intron 45.0%
! TTCAGGAGCAGCTTTTCTTC+AGG + chr3_1:79402469-79402488 None:intergenic 45.0%
TGGTGAAATGGCTTCTGATG+AGG + chr3_1:79402606-79402625 None:intergenic 45.0%
ACCAGAAGCTGAAGATCAAC+TGG - chr3_1:79402622-79402641 Msa0378570:intron 45.0%
TCCAGTTGATCTTCAGCTTC+TGG + chr3_1:79402626-79402645 None:intergenic 45.0%
! GAAGGCATGTGCTTGCAATT+TGG - chr3_1:79402757-79402776 Msa0378570:CDS 45.0%
! AAACAGAGTAGTGGAGAACG+TGG + chr3_1:79402822-79402841 None:intergenic 45.0%
GTGGACACAAAACAGAGTAG+TGG + chr3_1:79402831-79402850 None:intergenic 45.0%
CGCCTGCATATATGTTCCTT+TGG - chr3_1:79402887-79402906 Msa0378570:CDS 45.0%
! TAGCTTGTGTGCTTGAGCAA+AGG - chr3_1:79403359-79403378 Msa0378570:CDS 45.0%
! GAAATCTCCTTGGAAGTGCA+AGG - chr3_1:79403433-79403452 Msa0378570:CDS 45.0%
! AATCTCCTTGGAAGTGCAAG+GGG - chr3_1:79403435-79403454 Msa0378570:CDS 45.0%
!! TACTGGTTCCTTCCACAATC+CGG + chr3_1:79403474-79403493 None:intergenic 45.0%
GGAGATCATTAGAAGGGCAA+AGG + chr3_1:79404333-79404352 None:intergenic 45.0%
GTGCAGAGGAGATCATTAGA+AGG + chr3_1:79404340-79404359 None:intergenic 45.0%
TCTAATGATCTCCTCTGCAC+AGG - chr3_1:79404340-79404359 Msa0378570:CDS 45.0%
TTACTGGCATCCATTCACTG+AGG - chr3_1:79404427-79404446 Msa0378570:intron 45.0%
CACTGAGGAAGCTATTGAAC+AGG - chr3_1:79404442-79404461 Msa0378570:intron 45.0%
ATTGTAGAGCGATAGCAGGT+AGG + chr3_1:79404546-79404565 None:intergenic 45.0%
TCGTATTGTAGAGCGATAGC+AGG + chr3_1:79404550-79404569 None:intergenic 45.0%
CCTTCACGTTGATACCATGA+AGG + chr3_1:79404952-79404971 None:intergenic 45.0%
CCTTCATGGTATCAACGTGA+AGG - chr3_1:79404949-79404968 Msa0378570:intron 45.0%
!!! GAGTTTTGACTGCCCTAAAG+AGG - chr3_1:79405014-79405033 Msa0378570:intron 45.0%
TGATCCTTACAAGGCAGAGA+TGG - chr3_1:79405316-79405335 Msa0378570:intron 45.0%
! GTATGCTGGCTGTTCCAATT+AGG - chr3_1:79405644-79405663 Msa0378570:intron 45.0%
AACTCTTGTACACTTCCGAG+CGG + chr3_1:79406264-79406283 None:intergenic 45.0%
AGGGCGATAATATTCCCCAT+TGG + chr3_1:79406449-79406468 None:intergenic 45.0%
AACCATGCTCTCAAAGACAG+TGG - chr3_1:79406489-79406508 Msa0378570:intron 45.0%
! TTTTGATCAGTGGCGTATCC+AGG - chr3_1:79406532-79406551 Msa0378570:intron 45.0%
TCACCTTCTGACGCATAAAG+AGG + chr3_1:79407552-79407571 None:intergenic 45.0%
! TTTACAATCTTAGGGGGTGC+AGG - chr3_1:79407682-79407701 Msa0378570:intron 45.0%
TGAAGGATCAAAATCAGGGG+CGG + chr3_1:79407733-79407752 None:intergenic 45.0%
TGTGCAAGGGAATGACTTGA+TGG + chr3_1:79407780-79407799 None:intergenic 45.0%
!! GTTTTGACGAGCAGTCTAGC+AGG + chr3_1:79400872-79400891 None:intergenic 50.0%
TTGATCGCCTAGGATGACAG+CGG + chr3_1:79400983-79401002 None:intergenic 50.0%
! GCGATCTGAAGCAAAACCCT+TGG - chr3_1:79401311-79401330 Msa0378570:intron 50.0%
GTAGCCTTCTCTGCTCTTTG+GGG + chr3_1:79401913-79401932 None:intergenic 50.0%
CGTAGCCTTCTCTGCTCTTT+GGG + chr3_1:79401914-79401933 None:intergenic 50.0%
GAAGGCTACGCTTCAATTGG+TGG - chr3_1:79401924-79401943 Msa0378570:intron 50.0%
TTCAGGAGCAGCTTGACTTC+AGG + chr3_1:79402452-79402471 None:intergenic 50.0%
! GCTTCTGATGATGTGGCTTC+TGG + chr3_1:79402518-79402537 None:intergenic 50.0%
! ACAACGACTCTTTGGTGTGC+TGG - chr3_1:79402992-79403011 Msa0378570:intron 50.0%
TCTTGCAGTTGTGCTTGAGC+AGG - chr3_1:79403299-79403318 Msa0378570:intron 50.0%
! ATCTCCTTGGAAGTGCAAGG+GGG - chr3_1:79403436-79403455 Msa0378570:CDS 50.0%
ACTGGACTACTTCCGGATTG+TGG - chr3_1:79403459-79403478 Msa0378570:intron 50.0%
GACTACTTCCGGATTGTGGA+AGG - chr3_1:79403463-79403482 Msa0378570:intron 50.0%
ATCTAATAGGGTGTGGGCCA+GGG + chr3_1:79403984-79404003 None:intergenic 50.0%
TATCTAATAGGGTGTGGGCC+AGG + chr3_1:79403985-79404004 None:intergenic 50.0%
TGCCAACGTACACTTCAGCA+GGG + chr3_1:79404403-79404422 None:intergenic 50.0%
ATGCCAACGTACACTTCAGC+AGG + chr3_1:79404404-79404423 None:intergenic 50.0%
TGTACGTTGGCATGCGTTAC+TGG - chr3_1:79404411-79404430 Msa0378570:intron 50.0%
ATAGCAGGTAGGAGAATCCC+TGG + chr3_1:79404535-79404554 None:intergenic 50.0%
TAGACGTAAGCTTGAGCCAC+TGG + chr3_1:79404781-79404800 None:intergenic 50.0%
TGGCTCAAGCTTACGTCTAC+TGG - chr3_1:79404782-79404801 Msa0378570:intron 50.0%
GCCTCTTGCTTATGTGGAAG+AGG - chr3_1:79405289-79405308 Msa0378570:intron 50.0%
GCCTCTTCCACATAAGCAAG+AGG + chr3_1:79405293-79405312 None:intergenic 50.0%
CTTGCTTATGTGGAAGAGGC+CGG - chr3_1:79405293-79405312 Msa0378570:intron 50.0%
CTCTGCCTTGTAAGGATCAC+CGG + chr3_1:79405315-79405334 None:intergenic 50.0%
TCCTTACAAGGCAGAGATGG+AGG - chr3_1:79405319-79405338 Msa0378570:intron 50.0%
TCCTCCATCTCTGCCTTGTA+AGG + chr3_1:79405323-79405342 None:intergenic 50.0%
ACCTGATAGGCAAGGGTGAA+GGG + chr3_1:79405395-79405414 None:intergenic 50.0%
TACCTGATAGGCAAGGGTGA+AGG + chr3_1:79405396-79405415 None:intergenic 50.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr3_1:79405561-79405580 Msa0378570:intron 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr3_1:79405566-79405585 Msa0378570:intron 50.0%
CACATCCTAGAGCAGGAACA+CGG + chr3_1:79405870-79405889 None:intergenic 50.0%
TTCGAGGCTTGAAACTGCCA+TGG + chr3_1:79405953-79405972 None:intergenic 50.0%
AGAATACCTGTCGAGCTTCG+AGG + chr3_1:79405969-79405988 None:intergenic 50.0%
AAATAGGGAGTTGCCATCGC+CGG - chr3_1:79406305-79406324 Msa0378570:intron 50.0%
! CTCCACTGTCTTTGAGAGCA+TGG + chr3_1:79406494-79406513 None:intergenic 50.0%
GTCAACACTCAAGCGTCTAC+CGG + chr3_1:79407499-79407518 None:intergenic 50.0%
GCACCTCTTTATGCGTCAGA+AGG - chr3_1:79407546-79407565 Msa0378570:intron 50.0%
CTCCTTACCGCTGTCATCCT+AGG - chr3_1:79400973-79400992 Msa0378570:intron 55.0%
! TGAGAGGTACAGATTGCCGG+TGG + chr3_1:79401201-79401220 None:intergenic 55.0%
CACATGAGCTCCAGAGCAGA+AGG + chr3_1:79401232-79401251 None:intergenic 55.0%
!! CTTCTGCTCTGGAGCTCATG+TGG - chr3_1:79401230-79401249 Msa0378570:intron 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr3_1:79401458-79401477 None:intergenic 55.0%
GCGTAGCCTTCTCTGCTCTT+TGG + chr3_1:79401915-79401934 None:intergenic 55.0%
GGCTACGCTTCAATTGGTGG+TGG - chr3_1:79401927-79401946 Msa0378570:intron 55.0%
GCAGCTTCTGCAGCTTCTGA+TGG + chr3_1:79402554-79402573 None:intergenic 55.0%
ATGCAGGCGAGACCGTATTC+TGG + chr3_1:79402876-79402895 None:intergenic 55.0%
AAGGGGGACTGGACTACTTC+CGG - chr3_1:79403452-79403471 Msa0378570:intron 55.0%
CAAGTCTTCAGCCTGTGCAG+AGG + chr3_1:79404354-79404373 None:intergenic 55.0%
GTCCCTGCTGAAGTGTACGT+TGG - chr3_1:79404398-79404417 Msa0378570:intron 55.0%
! TGGGGTGCCTCTTGCTTATG+TGG - chr3_1:79405283-79405302 Msa0378570:intron 55.0%
AGAGGCCGGTGATCCTTACA+AGG - chr3_1:79405307-79405326 Msa0378570:intron 55.0%
GGCAGAGATGGAGGAATGTG+TGG - chr3_1:79405328-79405347 Msa0378570:intron 55.0%
TCCCTTCACCCTTGCCTATC+AGG - chr3_1:79405391-79405410 Msa0378570:intron 55.0%
GAGGGTTCACATCCTAGAGC+AGG + chr3_1:79405877-79405896 None:intergenic 55.0%
! TCTCCCATATGCTGGTGCCA+TGG - chr3_1:79405933-79405952 Msa0378570:intron 55.0%
CTGCCATGGCACCAGCATAT+GGG + chr3_1:79405939-79405958 None:intergenic 55.0%
ACTGCCATGGCACCAGCATA+TGG + chr3_1:79405940-79405959 None:intergenic 55.0%
TTCAAGCCTCGAAGCTCGAC+AGG - chr3_1:79405960-79405979 Msa0378570:intron 55.0%
! TGGCAGTCTTTGGTTCCGCT+CGG - chr3_1:79406246-79406265 Msa0378570:intron 55.0%
! GCCGGTGATAGTGTGGGAAT+GGG - chr3_1:79406323-79406342 Msa0378570:intron 55.0%
CCCCATTCCCACACTATCAC+CGG + chr3_1:79406327-79406346 None:intergenic 55.0%
! CCGGTGATAGTGTGGGAATG+GGG - chr3_1:79406324-79406343 Msa0378570:intron 55.0%
!! GTCAGGGGGTGCAGAGTTTT+TGG - chr3_1:79406562-79406581 Msa0378570:intron 55.0%
AGGTGCACACCCTCACTAAG+AGG - chr3_1:79407702-79407721 Msa0378570:intron 55.0%
TGCACACCCTCACTAAGAGG+TGG - chr3_1:79407705-79407724 Msa0378570:intron 55.0%
CGCCTAGGATGACAGCGGTA+AGG + chr3_1:79400978-79400997 None:intergenic 60.0%
! CTTTTGCAGGCTGTCGCCAC+CGG - chr3_1:79401182-79401201 Msa0378570:intron 60.0%
!! CTGCTCTGGAGCTCATGTGG+AGG - chr3_1:79401233-79401252 Msa0378570:intron 60.0%
AGGGCCCCAAAGAGCAGAGA+AGG - chr3_1:79401906-79401925 Msa0378570:intron 60.0%
CAGTCCCCCTTGCACTTCCA+AGG + chr3_1:79403443-79403462 None:intergenic 60.0%
! CTTGGAAGTGCAAGGGGGAC+TGG - chr3_1:79403441-79403460 Msa0378570:CDS 60.0%
AGCTGCAAGCACGCGTGATC+TGG - chr3_1:79403930-79403949 Msa0378570:CDS 60.0%
GCAGGTAGGAGAATCCCTGG+TGG + chr3_1:79404532-79404551 None:intergenic 60.0%
! TGCCATCGCCGGTGATAGTG+TGG - chr3_1:79406316-79406335 Msa0378570:intron 60.0%
! GCCATCGCCGGTGATAGTGT+GGG - chr3_1:79406317-79406336 Msa0378570:intron 60.0%
TCCCACACTATCACCGGCGA+TGG + chr3_1:79406321-79406340 None:intergenic 60.0%
! CGCCGGTGATAGTGTGGGAA+TGG - chr3_1:79406322-79406341 Msa0378570:intron 60.0%
AGTGGCGTATCCAGGACCCT+GGG - chr3_1:79406540-79406559 Msa0378570:intron 60.0%
GTATCCAGGACCCTGGGTCA+GGG - chr3_1:79406546-79406565 Msa0378570:intron 60.0%
TATCCAGGACCCTGGGTCAG+GGG - chr3_1:79406547-79406566 Msa0378570:intron 60.0%
GCGGAGCCACCTCTTAGTGA+GGG + chr3_1:79407714-79407733 None:intergenic 60.0%
TGGGGCCGTGTTCCTGCTCT+AGG - chr3_1:79405862-79405881 Msa0378570:intron 65.0%
CAGTGGCGTATCCAGGACCC+TGG - chr3_1:79406539-79406558 Msa0378570:intron 65.0%
CGTATCCAGGACCCTGGGTC+AGG - chr3_1:79406545-79406564 Msa0378570:intron 65.0%
ATCCAGGACCCTGGGTCAGG+GGG - chr3_1:79406548-79406567 Msa0378570:intron 65.0%
ACTCTGCACCCCCTGACCCA+GGG + chr3_1:79406559-79406578 None:intergenic 65.0%
AACTCTGCACCCCCTGACCC+AGG + chr3_1:79406560-79406579 None:intergenic 65.0%
GGCGGAGCCACCTCTTAGTG+AGG + chr3_1:79407715-79407734 None:intergenic 65.0%
CACCCCCTGACCCAGGGTCC+TGG + chr3_1:79406553-79406572 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79400757 79407964 79400757 ID=Msa0378570;Name=Msa0378570
chr3_1 mRNA 79400757 79407964 79400757 ID=Msa0378570-mRNA-1;Parent=Msa0378570;Name=Msa0378570-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.66|0.7|0.9|0.88|0.8|10|277|449
chr3_1 exon 79400757 79400976 79400757 ID=Msa0378570-mRNA-1:exon:19537;Parent=Msa0378570-mRNA-1
chr3_1 exon 79402185 79402469 79402185 ID=Msa0378570-mRNA-1:exon:19536;Parent=Msa0378570-mRNA-1
chr3_1 exon 79402740 79402941 79402740 ID=Msa0378570-mRNA-1:exon:19535;Parent=Msa0378570-mRNA-1
chr3_1 exon 79403056 79403156 79403056 ID=Msa0378570-mRNA-1:exon:19534;Parent=Msa0378570-mRNA-1
chr3_1 exon 79403309 79403461 79403309 ID=Msa0378570-mRNA-1:exon:19533;Parent=Msa0378570-mRNA-1
chr3_1 exon 79403662 79403812 79403662 ID=Msa0378570-mRNA-1:exon:19532;Parent=Msa0378570-mRNA-1
chr3_1 exon 79403904 79404007 79403904 ID=Msa0378570-mRNA-1:exon:19531;Parent=Msa0378570-mRNA-1
chr3_1 exon 79404258 79404359 79404258 ID=Msa0378570-mRNA-1:exon:19530;Parent=Msa0378570-mRNA-1
chr3_1 exon 79407239 79407530 79407239 ID=Msa0378570-mRNA-1:exon:19529;Parent=Msa0378570-mRNA-1
chr3_1 exon 79407948 79407964 79407948 ID=Msa0378570-mRNA-1:exon:19528;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79407948 79407964 79407948 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79407239 79407530 79407239 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79404258 79404359 79404258 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79403904 79404007 79403904 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79403662 79403812 79403662 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79403309 79403461 79403309 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79403056 79403156 79403056 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79402740 79402941 79402740 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 CDS 79402242 79402469 79402242 ID=Msa0378570-mRNA-1:cds;Parent=Msa0378570-mRNA-1
chr3_1 three_prime_UTR 79402185 79402241 79402185 ID=Msa0378570-mRNA-1:three_prime_utr;Parent=Msa0378570-mRNA-1
chr3_1 three_prime_UTR 79400757 79400976 79400757 ID=Msa0378570-mRNA-1:three_prime_utr;Parent=Msa0378570-mRNA-1
Gene Sequence

>Msa0378570

ATGGATAGGAATTCACCGCTGTCGCCACCGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACTCTAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGCAGTGTACTTTTTACCTTATGTAGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGCTGGCTGTTCCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTGTTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>Msa0378570

MDRNSPLSPPAICTSQKKSFCSGAHVEASVNSNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEAVYFLPYVVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPYAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSVFHQWGILSPSLR*