Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277110 | XP_003627447.1 | 97.216 | 467 | 9 | 2 | 29 | 495 | 1 | 463 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277110 | G7L969 | 97.216 | 467 | 9 | 2 | 29 | 495 | 1 | 463 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1277110 | 0.806343 | 8.614261e-50 | -8.615850e-47 |
| Msa0014770 | Msa1277110 | 0.804217 | 2.401813e-49 | -8.615850e-47 |
| Msa0041790 | Msa1277110 | 0.836202 | 1.074175e-56 | -8.615850e-47 |
| Msa0050150 | Msa1277110 | 0.802047 | 6.751557e-49 | -8.615850e-47 |
| Msa0050530 | Msa1277110 | 0.811458 | 6.929649e-51 | -8.615850e-47 |
| Msa0100600 | Msa1277110 | 0.842917 | 1.928752e-58 | -8.615850e-47 |
| Msa0100890 | Msa1277110 | 0.809961 | 1.460263e-50 | -8.615850e-47 |
| Msa0618990 | Msa1277110 | 0.804614 | 1.984877e-49 | -8.615850e-47 |
| Msa0625620 | Msa1277110 | 0.814862 | 1.241117e-51 | -8.615850e-47 |
| Msa0630440 | Msa1277110 | 0.814076 | 1.852220e-51 | -8.615850e-47 |
| Msa0640800 | Msa1277110 | 0.817309 | 3.526179e-52 | -8.615850e-47 |
| Msa0648040 | Msa1277110 | 0.803970 | 2.703994e-49 | -8.615850e-47 |
| Msa0689830 | Msa1277110 | 0.817247 | 3.641305e-52 | -8.615850e-47 |
| Msa0690740 | Msa1277110 | 0.812379 | 4.368159e-51 | -8.615850e-47 |
| Msa0707260 | Msa1277110 | 0.830627 | 2.639364e-55 | -8.615850e-47 |
| Msa0717900 | Msa1277110 | 0.817624 | 2.994806e-52 | -8.615850e-47 |
| Msa0719270 | Msa1277110 | 0.807988 | 3.862005e-50 | -8.615850e-47 |
| Msa0720280 | Msa1277110 | 0.802781 | 4.766034e-49 | -8.615850e-47 |
| Msa0737020 | Msa1277110 | 0.815053 | 1.125916e-51 | -8.615850e-47 |
| Msa0746650 | Msa1277110 | 0.801072 | 1.069974e-48 | -8.615850e-47 |
| Msa0751720 | Msa1277110 | 0.809711 | 1.653010e-50 | -8.615850e-47 |
| Msa0774060 | Msa1277110 | 0.804422 | 2.176361e-49 | -8.615850e-47 |
| Msa0778600 | Msa1277110 | 0.800387 | 1.476132e-48 | -8.615850e-47 |
| Msa0780820 | Msa1277110 | 0.811871 | 5.637031e-51 | -8.615850e-47 |
| Msa0803140 | Msa1277110 | 0.802515 | 5.408756e-49 | -8.615850e-47 |
| Msa0816080 | Msa1277110 | 0.800670 | 1.292680e-48 | -8.615850e-47 |
| Msa0816230 | Msa1277110 | 0.827711 | 1.345115e-54 | -8.615850e-47 |
| Msa0827420 | Msa1277110 | 0.825453 | 4.648677e-54 | -8.615850e-47 |
| Msa0837680 | Msa1277110 | 0.803213 | 3.880520e-49 | -8.615850e-47 |
| Msa0125590 | Msa1277110 | 0.811546 | 6.634149e-51 | -8.615850e-47 |
| Msa0168380 | Msa1277110 | 0.829522 | 4.911872e-55 | -8.615850e-47 |
| Msa0170070 | Msa1277110 | 0.810872 | 9.284967e-51 | -8.615850e-47 |
| Msa0172590 | Msa1277110 | 0.815644 | 8.318207e-52 | -8.615850e-47 |
| Msa0192050 | Msa1277110 | 0.811007 | 8.684490e-51 | -8.615850e-47 |
| Msa0204970 | Msa1277110 | 0.805731 | 1.158433e-49 | -8.615850e-47 |
| Msa1234460 | Msa1277110 | 0.813579 | 2.383014e-51 | -8.615850e-47 |
| Msa1267150 | Msa1277110 | 0.800069 | 1.713566e-48 | -8.615850e-47 |
| Msa1277110 | Msa1294790 | 0.811050 | 8.499700e-51 | -8.615850e-47 |
| Msa1277110 | Msa1297070 | 0.801804 | 7.574882e-49 | -8.615850e-47 |
| Msa1277110 | Msa1308860 | 0.803547 | 3.308729e-49 | -8.615850e-47 |
| Msa1277110 | Msa1315500 | 0.958768 | 1.037830e-116 | -8.615850e-47 |
| Msa1277110 | Msa1328870 | 0.806929 | 6.479435e-50 | -8.615850e-47 |
| Msa1277110 | Msa1333650 | 0.802955 | 4.387529e-49 | -8.615850e-47 |
| Msa1277110 | Msa1339230 | 0.810572 | 1.078600e-50 | -8.615850e-47 |
| Msa1277110 | Msa1349690 | 0.805141 | 1.540785e-49 | -8.615850e-47 |
| Msa1277110 | Msa1387500 | 0.819699 | 1.012635e-52 | -8.615850e-47 |
| Msa1277110 | Msa1389820 | 0.806774 | 6.986049e-50 | -8.615850e-47 |
| Msa1277110 | Msa1393560 | 0.805696 | 1.178584e-49 | -8.615850e-47 |
| Msa1277110 | Msa1399190 | 0.812530 | 4.048072e-51 | -8.615850e-47 |
| Msa1277110 | Msa1420830 | 0.819265 | 1.272078e-52 | -8.615850e-47 |
| Msa1277110 | Msa1426320 | 0.829924 | 3.921373e-55 | -8.615850e-47 |
| Msa1277110 | Msa1435100 | 0.806619 | 7.531799e-50 | -8.615850e-47 |
| Msa1277110 | Msa1437810 | 0.800920 | 1.149414e-48 | -8.615850e-47 |
| Msa1277110 | Msa1439730 | 0.804808 | 1.808352e-49 | -8.615850e-47 |
| Msa0373170 | Msa1277110 | 0.812892 | 3.371988e-51 | -8.615850e-47 |
| Msa0382230 | Msa1277110 | 0.812272 | 4.607963e-51 | -8.615850e-47 |
| Msa0388250 | Msa1277110 | 0.834529 | 2.844101e-56 | -8.615850e-47 |
| Msa0404770 | Msa1277110 | 0.819090 | 1.393783e-52 | -8.615850e-47 |
| Msa0416210 | Msa1277110 | 0.847190 | 1.352432e-59 | -8.615850e-47 |
| Msa0421750 | Msa1277110 | 0.802762 | 4.809224e-49 | -8.615850e-47 |
| Msa0433630 | Msa1277110 | 0.858947 | 5.804568e-63 | -8.615850e-47 |
| Msa0467690 | Msa1277110 | 0.814413 | 1.560194e-51 | -8.615850e-47 |
| Msa0477480 | Msa1277110 | 0.824424 | 8.133330e-54 | -8.615850e-47 |
| Msa0982730 | Msa1277110 | 0.808805 | 2.585937e-50 | -8.615850e-47 |
| Msa1000780 | Msa1277110 | 0.810389 | 1.181141e-50 | -8.615850e-47 |
| Msa1008260 | Msa1277110 | 0.817759 | 2.791701e-52 | -8.615850e-47 |
| Msa1049910 | Msa1277110 | 0.805600 | 1.234355e-49 | -8.615850e-47 |
| Msa1050260 | Msa1277110 | 0.809991 | 1.439296e-50 | -8.615850e-47 |
| Msa1072310 | Msa1277110 | 0.800384 | 1.477889e-48 | -8.615850e-47 |
| Msa0272540 | Msa1277110 | 0.831799 | 1.359858e-55 | -8.615850e-47 |
| Msa0342220 | Msa1277110 | 0.804548 | 2.049310e-49 | -8.615850e-47 |
| Msa1147700 | Msa1277110 | 0.812061 | 5.125106e-51 | -8.615850e-47 |
| Msa1206040 | Msa1277110 | 0.805697 | 1.177860e-49 | -8.615850e-47 |
| Msa1219640 | Msa1277110 | 0.802375 | 5.780182e-49 | -8.615850e-47 |
| Msa1219770 | Msa1277110 | 0.813795 | 2.136465e-51 | -8.615850e-47 |
| Msa1220580 | Msa1277110 | 0.801884 | 7.295132e-49 | -8.615850e-47 |
| Msa0513640 | Msa1277110 | 0.814594 | 1.422880e-51 | -8.615850e-47 |
| Msa0514020 | Msa1277110 | 0.819574 | 1.081248e-52 | -8.615850e-47 |
| Msa0520680 | Msa1277110 | 0.803671 | 3.118820e-49 | -8.615850e-47 |
| Msa0521510 | Msa1277110 | 0.871466 | 6.691563e-67 | -8.615850e-47 |
| Msa0521530 | Msa1277110 | 0.841441 | 4.742560e-58 | -8.615850e-47 |
| Msa0541880 | Msa1277110 | 0.813410 | 2.595780e-51 | -8.615850e-47 |
| Msa0541940 | Msa1277110 | 0.807293 | 5.424942e-50 | -8.615850e-47 |
| Msa0544410 | Msa1277110 | 0.807840 | 4.152544e-50 | -8.615850e-47 |
| Msa0572830 | Msa1277110 | 0.836044 | 1.178353e-56 | -8.615850e-47 |
| Msa0579080 | Msa1277110 | 0.811444 | 6.979588e-51 | -8.615850e-47 |
| Msa0579220 | Msa1277110 | 0.802642 | 5.092246e-49 | -8.615850e-47 |
| Msa0846900 | Msa1277110 | 0.802605 | 5.181986e-49 | -8.615850e-47 |
| Msa0857260 | Msa1277110 | 0.800742 | 1.249480e-48 | -8.615850e-47 |
| Msa0900090 | Msa1277110 | 0.816900 | 4.356982e-52 | -8.615850e-47 |
| Msa0926310 | Msa1277110 | 0.813163 | 2.941967e-51 | -8.615850e-47 |
| Msa0945900 | Msa1277110 | 0.805855 | 1.091224e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277110 | MtrunA17_Chr8g0345191 | 97.216 | 467 | 9 | 2 | 29 | 495 | 1 | 463 | 0.0 | 936 |
| Msa1277110 | MtrunA17_Chr8g0376741 | 27.007 | 411 | 248 | 16 | 103 | 486 | 139 | 524 | 3.90e-21 | 96.7 |
| Msa1277110 | MtrunA17_Chr8g0375241 | 29.570 | 372 | 210 | 13 | 123 | 472 | 145 | 486 | 1.95e-19 | 91.3 |
| Msa1277110 | MtrunA17_Chr1g0153281 | 27.686 | 242 | 146 | 5 | 254 | 492 | 403 | 618 | 7.81e-18 | 86.7 |
| Msa1277110 | MtrunA17_Chr8g0375091 | 26.203 | 374 | 202 | 13 | 123 | 464 | 82 | 413 | 1.41e-16 | 82.0 |
| Msa1277110 | MtrunA17_Chr8g0377061 | 30.851 | 188 | 114 | 5 | 269 | 455 | 151 | 323 | 4.06e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277110 | AT1G53860.1 | 46.218 | 476 | 162 | 18 | 44 | 493 | 32 | 439 | 5.82e-113 | 341 |
| Msa1277110 | AT1G53860.2 | 49.153 | 413 | 129 | 17 | 92 | 493 | 29 | 371 | 1.61e-107 | 325 |
| Msa1277110 | AT2G02170.1 | 30.941 | 404 | 231 | 15 | 84 | 472 | 98 | 468 | 7.81e-28 | 116 |
| Msa1277110 | AT2G02170.2 | 30.941 | 404 | 231 | 15 | 84 | 472 | 98 | 468 | 7.81e-28 | 116 |
| Msa1277110 | AT2G02170.5 | 30.941 | 404 | 231 | 15 | 84 | 472 | 98 | 468 | 7.81e-28 | 116 |
| Msa1277110 | AT2G02170.4 | 30.941 | 404 | 231 | 15 | 84 | 472 | 98 | 468 | 7.81e-28 | 116 |
| Msa1277110 | AT2G02170.3 | 32.345 | 371 | 205 | 15 | 120 | 472 | 1 | 343 | 1.31e-27 | 114 |
| Msa1277110 | AT2G02170.6 | 32.345 | 371 | 205 | 15 | 120 | 472 | 1 | 343 | 1.31e-27 | 114 |
| Msa1277110 | AT1G67590.1 | 30.435 | 207 | 121 | 3 | 266 | 472 | 141 | 324 | 3.32e-19 | 89.4 |
| Msa1277110 | AT1G30320.1 | 31.674 | 221 | 136 | 5 | 262 | 472 | 275 | 490 | 5.01e-18 | 87.4 |
| Msa1277110 | AT1G67590.2 | 30.189 | 159 | 88 | 3 | 266 | 424 | 141 | 276 | 1.89e-12 | 68.2 |
Find 75 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATACATGTTCATGTTTA+AGG | 0.047455 | 8_3:-12247761 | None:intergenic |
| TGGCTTCTGCTTTAGCATTT+TGG | 0.143930 | 8_3:-12250155 | None:intergenic |
| TCTTCATCAACTTCTCTTCT+AGG | 0.148288 | 8_3:-12251279 | None:intergenic |
| AAGAACAAACACATGTTTAA+TGG | 0.195758 | 8_3:-12251468 | None:intergenic |
| TCTTCACTTGAGCTCCAATT+TGG | 0.237659 | 8_3:-12249604 | None:intergenic |
| TTAGAAGGAAAACTCTTTCT+TGG | 0.240297 | 8_3:-12248045 | None:intergenic |
| GGTTCTGAATACCTGAATTT+TGG | 0.242708 | 8_3:-12249268 | None:intergenic |
| CTAGGTTTGATCTCATCTTT+TGG | 0.242960 | 8_3:-12251261 | None:intergenic |
| TCAAAGTTCTTCTTCAAGTT+TGG | 0.247781 | 8_3:+12248278 | Msa1277110:CDS |
| GCTGTTTCATCTTCAGAATC+TGG | 0.297830 | 8_3:+12248150 | Msa1277110:CDS |
| TCTTCTTCTTCTAGCATTGT+TGG | 0.302752 | 8_3:+12248012 | Msa1277110:CDS |
| TGGAACAACAAAGTATGATT+TGG | 0.316654 | 8_3:+12249576 | Msa1277110:CDS |
| ATGATTTGGTCGCACCAAAT+TGG | 0.331096 | 8_3:+12249590 | Msa1277110:CDS |
| CCAACAGACATAGTACTAAA+AGG | 0.331635 | 8_3:+12248345 | Msa1277110:CDS |
| CTATACATGTTCATGTTTAA+GGG | 0.335852 | 8_3:-12247760 | None:intergenic |
| TCAGCATCATCCCATTTAGA+AGG | 0.351555 | 8_3:-12248060 | None:intergenic |
| GGAACAAGACAATGTGATAA+TGG | 0.370159 | 8_3:+12248171 | Msa1277110:CDS |
| TAATGGCTTTAAGCAGAAAA+TGG | 0.377630 | 8_3:+12248188 | Msa1277110:CDS |
| AGAAGAACAAGTGCTGTCTT+AGG | 0.384308 | 8_3:+12249716 | Msa1277110:CDS |
| TCTGCATTGGTGTTTGAAAC+TGG | 0.400700 | 8_3:-12247892 | None:intergenic |
| ACAACAACACTTAGAACAAA+TGG | 0.405886 | 8_3:+12251351 | Msa1277110:CDS |
| CTTCTCATCATCTTCCCAAC+TGG | 0.415543 | 8_3:-12249698 | None:intergenic |
| AGTGGTCTACCAGGTGTAGA+AGG | 0.428314 | 8_3:-12247967 | None:intergenic |
| CTCAAGTGAAGAGGAGGAAA+AGG | 0.432830 | 8_3:+12249615 | Msa1277110:CDS |
| GAAAATCTGATGTGAAGATT+GGG | 0.434444 | 8_3:+12246536 | Msa1277110:CDS |
| TCAATGAAATCATCAACAAA+AGG | 0.436808 | 8_3:-12247817 | None:intergenic |
| TGCTAGTAGGTCAGGACCAT+TGG | 0.447997 | 8_3:+12249474 | Msa1277110:CDS |
| ACCTACTAGCAGGAGTGTTA+TGG | 0.458860 | 8_3:-12249462 | None:intergenic |
| GGAAAATCTGATGTGAAGAT+TGG | 0.462933 | 8_3:+12246535 | Msa1277110:CDS |
| AACAGTGTTGGAGCTTTCCA+TGG | 0.468711 | 8_3:+12248309 | Msa1277110:CDS |
| GGCACAGAAATGACTCCATT+AGG | 0.474794 | 8_3:+12249385 | Msa1277110:CDS |
| TAGAAGAGAAGTTGATGAAG+AGG | 0.474993 | 8_3:+12251281 | Msa1277110:CDS |
| GTTTAATGGTTGTTATTGCA+AGG | 0.478802 | 8_3:-12251454 | None:intergenic |
| AAGGAAAACTCTTTCTTGGA+AGG | 0.487386 | 8_3:-12248041 | None:intergenic |
| AACACTCCTGCTAGTAGGTC+AGG | 0.488893 | 8_3:+12249466 | Msa1277110:CDS |
| TGATTGTATAGCTGCCAGTT+GGG | 0.489579 | 8_3:+12249684 | Msa1277110:CDS |
| GAAGTGGTGGAACTTCCTAA+TGG | 0.497914 | 8_3:-12249400 | None:intergenic |
| TTTAATGGTTGTTATTGCAA+GGG | 0.519094 | 8_3:-12251453 | None:intergenic |
| TTCACAGGAAAGCTGAGGAT+TGG | 0.520048 | 8_3:+12251314 | Msa1277110:CDS |
| AAGCTGAAAAGTGGTCTACC+AGG | 0.520352 | 8_3:-12247976 | None:intergenic |
| CTGATTGTATAGCTGCCAGT+TGG | 0.520802 | 8_3:+12249683 | Msa1277110:CDS |
| CAATGAAATCATCAACAAAA+GGG | 0.520852 | 8_3:-12247816 | None:intergenic |
| TATTCAGAACCAACAAAAGA+AGG | 0.526385 | 8_3:+12249280 | Msa1277110:CDS |
| TTTAGTACTATGTCTGTTGG+TGG | 0.529642 | 8_3:-12248342 | None:intergenic |
| GAAGAACTGAAGCTGAAAAG+TGG | 0.537400 | 8_3:-12247985 | None:intergenic |
| AGAGGATGTCAATGGTTCAC+AGG | 0.541745 | 8_3:+12251299 | Msa1277110:CDS |
| GAAGTTAAACACAAAGATGT+TGG | 0.542067 | 8_3:+12249364 | Msa1277110:CDS |
| CTTTAAGCAGAAAATGGATG+AGG | 0.543055 | 8_3:+12248194 | Msa1277110:CDS |
| CTAGAAGCTCCTTCTACACC+TGG | 0.550547 | 8_3:+12247958 | Msa1277110:CDS |
| TTGGACCACAATAACAGTGT+TGG | 0.565677 | 8_3:+12248297 | Msa1277110:CDS |
| AAGCTCCAACACTGTTATTG+TGG | 0.573263 | 8_3:-12248302 | None:intergenic |
| GCAGGAGTGTTATGGCGCGC+AGG | 0.575784 | 8_3:-12249454 | None:intergenic |
| GTTGATGAAGAGGATGTCAA+TGG | 0.576855 | 8_3:+12251291 | Msa1277110:CDS |
| AATGGTCCTGACCTACTAGC+AGG | 0.581765 | 8_3:-12249472 | None:intergenic |
| TACATGTTCATGTTTAAGGG+TGG | 0.591255 | 8_3:-12247757 | None:intergenic |
| ACAGTGTTGGAGCTTTCCAT+GGG | 0.592400 | 8_3:+12248310 | Msa1277110:CDS |
| ATTCAGAAATCAAGCTTGTG+AGG | 0.593668 | 8_3:+12249309 | Msa1277110:CDS |
| TTATCTAACATCGATAGCAA+TGG | 0.594700 | 8_3:+12249499 | Msa1277110:CDS |
| GCCATAACACTCCTGCTAGT+AGG | 0.598039 | 8_3:+12249461 | Msa1277110:CDS |
| TTTAAGCAGAAAATGGATGA+GGG | 0.600087 | 8_3:+12248195 | Msa1277110:CDS |
| AAAATGCTAAAGCAGAAGCC+AGG | 0.601345 | 8_3:+12250157 | Msa1277110:CDS |
| TCATCGAGAAGAACCATCGT+TGG | 0.604845 | 8_3:+12246514 | Msa1277110:CDS |
| TTGGAGCTCAAGTGAAGAGG+AGG | 0.612723 | 8_3:+12249609 | Msa1277110:CDS |
| AAAGTGTTGCTATTATGAGC+TGG | 0.619013 | 8_3:-12248117 | None:intergenic |
| TTGGTGGACATGAGATCCCA+TGG | 0.620137 | 8_3:-12248326 | None:intergenic |
| AAATTGGAGCTCAAGTGAAG+AGG | 0.625563 | 8_3:+12249606 | Msa1277110:CDS |
| AAAATCTGATGTGAAGATTG+GGG | 0.629112 | 8_3:+12246537 | Msa1277110:CDS |
| TTTAGGTTCAGCTTGCAAAG+TGG | 0.629888 | 8_3:-12247841 | None:intergenic |
| TCGATGTTAGATAATGCCAA+TGG | 0.645330 | 8_3:-12249490 | None:intergenic |
| CGGTGTGTGACATCTTGAAG+TGG | 0.670704 | 8_3:-12249416 | None:intergenic |
| GCAGGAGATGAACTCTTGAA+CGG | 0.677595 | 8_3:-12249436 | None:intergenic |
| AATGGTTCACAGGAAAGCTG+AGG | 0.679326 | 8_3:+12251309 | Msa1277110:CDS |
| TGTGTGACATCTTGAAGTGG+TGG | 0.688488 | 8_3:-12249413 | None:intergenic |
| TAAAGACTTGACAAACTCAG+AGG | 0.691687 | 8_3:-12247869 | None:intergenic |
| AAATCTGATGTGAAGATTGG+GGG | 0.745405 | 8_3:+12246538 | Msa1277110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAATAATTAATAAA+TGG | - | chr8_3:12250768-12250787 | None:intergenic | 0.0% |
| !! | TAATAACTATAAATTAAATG+AGG | + | chr8_3:12246725-12246744 | Msa1277110:intron | 10.0% |
| !!! | CAATAAATGTTTTTATTTTT+TGG | - | chr8_3:12247133-12247152 | None:intergenic | 10.0% |
| !! | AGAAATAATAATAAAAAGTT+TGG | - | chr8_3:12248489-12248508 | None:intergenic | 10.0% |
| !!! | AACATTTTATAGTATTATTA+AGG | - | chr8_3:12251097-12251116 | None:intergenic | 10.0% |
| !! | TATAAATTAAATGAGGAAAA+GGG | + | chr8_3:12246732-12246751 | Msa1277110:intron | 15.0% |
| !!! | AATTTTATTAATTCAACAAC+TGG | + | chr8_3:12249201-12249220 | Msa1277110:intron | 15.0% |
| !!! | CGATTAAATTTTTAAAACAT+TGG | - | chr8_3:12249759-12249778 | None:intergenic | 15.0% |
| !!! | GTTGAAAATATGTTTTAATT+AGG | - | chr8_3:12250022-12250041 | None:intergenic | 15.0% |
| !! | AATGTATGATAAAATAGATT+TGG | - | chr8_3:12250209-12250228 | None:intergenic | 15.0% |
| !!! | ATCTATTTTATCATACATTT+TGG | + | chr8_3:12250210-12250229 | Msa1277110:intron | 15.0% |
| !! | TAACAATAATAAACAATCTA+TGG | - | chr8_3:12250307-12250326 | None:intergenic | 15.0% |
| !! | AAAAAAAAATAGAACAATAG+TGG | - | chr8_3:12250928-12250947 | None:intergenic | 15.0% |
| !!! | TTTTCATTAGTTAAAGAAAT+TGG | + | chr8_3:12250944-12250963 | Msa1277110:intron | 15.0% |
| !! | CTATAAATTAAATGAGGAAA+AGG | + | chr8_3:12246731-12246750 | Msa1277110:intron | 20.0% |
| !!! | ACTTATTGACAATTTTTTGA+AGG | - | chr8_3:12247225-12247244 | None:intergenic | 20.0% |
| !! | ATTGTCAATAAGTATATGTT+TGG | + | chr8_3:12247232-12247251 | Msa1277110:intron | 20.0% |
| !! | ATAAGTATATGTTTGGATAT+AGG | + | chr8_3:12247239-12247258 | Msa1277110:intron | 20.0% |
| !!! | TAAAATAATGCAACTTTTAG+AGG | - | chr8_3:12247416-12247435 | None:intergenic | 20.0% |
| !! | TGCAAAAGAAATAAAAACAA+TGG | - | chr8_3:12247689-12247708 | None:intergenic | 20.0% |
| !!! | CAATGAAAAAGTTGAAATTT+TGG | - | chr8_3:12248390-12248409 | None:intergenic | 20.0% |
| !!! | TCATTTTTGCAAATTATTAC+CGG | + | chr8_3:12248744-12248763 | Msa1277110:intron | 20.0% |
| !! | ATTAAAACCTTGTCATTAAA+TGG | - | chr8_3:12249112-12249131 | None:intergenic | 20.0% |
| !!! | TTTTAAAACATTGGTTTGTA+AGG | - | chr8_3:12249750-12249769 | None:intergenic | 20.0% |
| !! | ATTTAATCGAAAAGTTCAAT+AGG | + | chr8_3:12249770-12249789 | Msa1277110:intron | 20.0% |
| !! | TGTTAACTACTTAATTTAGA+GGG | - | chr8_3:12250422-12250441 | None:intergenic | 20.0% |
| !! | ATGTTAACTACTTAATTTAG+AGG | - | chr8_3:12250423-12250442 | None:intergenic | 20.0% |
| !!! | AACGATTCATATTTTAAGTT+TGG | - | chr8_3:12250460-12250479 | None:intergenic | 20.0% |
| !!! | TTGATAATAGATTGTAATCT+AGG | + | chr8_3:12250972-12250991 | Msa1277110:intron | 20.0% |
| !! | TGATAATAGATTGTAATCTA+GGG | + | chr8_3:12250973-12250992 | Msa1277110:intron | 20.0% |
| !! | CATTATCATCATTATTCTTA+TGG | - | chr8_3:12251023-12251042 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTAACACATTTG+TGG | - | chr8_3:12251145-12251164 | None:intergenic | 20.0% |
| !!! | TTGAACATTAAAAATTTGCT+TGG | - | chr8_3:12251186-12251205 | None:intergenic | 20.0% |
| !!! | AGCATGCTTTATTAATTTAT+AGG | + | chr8_3:12251231-12251250 | Msa1277110:intron | 20.0% |
| !! | AAGCTAAAAAGATTATTCAT+AGG | + | chr8_3:12251389-12251408 | Msa1277110:CDS | 20.0% |
| ! | GTAAATTGGTTGTAAGTTAA+TGG | + | chr8_3:12246628-12246647 | Msa1277110:intron | 25.0% |
| ! | ATAAAATGAGTCACATGTAA+AGG | - | chr8_3:12246932-12246951 | None:intergenic | 25.0% |
| ! | GATAATGAAGAAAGGAAAAA+AGG | - | chr8_3:12246983-12247002 | None:intergenic | 25.0% |
| !!! | ATTTTGACAAGCTACTAAAA+TGG | - | chr8_3:12247097-12247116 | None:intergenic | 25.0% |
| !! | AGTAGCTTGTCAAAATTAAT+TGG | + | chr8_3:12247101-12247120 | Msa1277110:intron | 25.0% |
| ! | TTGAGCACAAGAAAATAATT+AGG | + | chr8_3:12247150-12247169 | Msa1277110:intron | 25.0% |
| ! | CTTATTAGAATAAGGGAAAA+TGG | - | chr8_3:12247603-12247622 | None:intergenic | 25.0% |
| ! | AGGGTTACTTATTAGAATAA+GGG | - | chr8_3:12247610-12247629 | None:intergenic | 25.0% |
| !!! | GATGTTTTTGTTGTTTTAGA+GGG | - | chr8_3:12247629-12247648 | None:intergenic | 25.0% |
| !!! | AGATGTTTTTGTTGTTTTAG+AGG | - | chr8_3:12247630-12247649 | None:intergenic | 25.0% |
| ! | CTATACATGTTCATGTTTAA+GGG | - | chr8_3:12247763-12247782 | None:intergenic | 25.0% |
| ! | CAATGAAATCATCAACAAAA+GGG | - | chr8_3:12247819-12247838 | None:intergenic | 25.0% |
| ! | TCAATGAAATCATCAACAAA+AGG | - | chr8_3:12247820-12247839 | None:intergenic | 25.0% |
| !! | AAAGAGTTTTCCTTCTAAAT+GGG | + | chr8_3:12248050-12248069 | Msa1277110:CDS | 25.0% |
| !!! | TACCTGAATTTTGGTAAAAT+TGG | - | chr8_3:12249262-12249281 | None:intergenic | 25.0% |
| !! | AATAAGAATCCTTCTTTTGT+TGG | - | chr8_3:12249292-12249311 | None:intergenic | 25.0% |
| !! | CATTTTTCTAAACTGCAATT+TGG | + | chr8_3:12249556-12249575 | Msa1277110:CDS | 25.0% |
| ! | TTGTATATGTACACTGTATA+TGG | - | chr8_3:12250637-12250656 | None:intergenic | 25.0% |
| ! | TATTGCATGAAATCAGTATA+GGG | - | chr8_3:12250846-12250865 | None:intergenic | 25.0% |
| ! | ATATTGCATGAAATCAGTAT+AGG | - | chr8_3:12250847-12250866 | None:intergenic | 25.0% |
| !! | TTTAATGGTTGTTATTGCAA+GGG | - | chr8_3:12251456-12251475 | None:intergenic | 25.0% |
| ! | AAGAACAAACACATGTTTAA+TGG | - | chr8_3:12251471-12251490 | None:intergenic | 25.0% |
| GAAAATCTGATGTGAAGATT+GGG | + | chr8_3:12246536-12246555 | Msa1277110:CDS | 30.0% | |
| AAAATCTGATGTGAAGATTG+GGG | + | chr8_3:12246537-12246556 | Msa1277110:CDS | 30.0% | |
| CTTCACTTTGTTCTGTAAAT+TGG | + | chr8_3:12246614-12246633 | Msa1277110:intron | 30.0% | |
| !! | TGACTCATTTTATTAGTCTC+TGG | + | chr8_3:12246939-12246958 | Msa1277110:intron | 30.0% |
| TGGAACAAGATAATGAAGAA+AGG | - | chr8_3:12246991-12247010 | None:intergenic | 30.0% | |
| TGATCAAATGTGAGACAAAA+AGG | + | chr8_3:12247268-12247287 | Msa1277110:intron | 30.0% | |
| TCCAAACATACGATAAAATG+AGG | + | chr8_3:12247381-12247400 | Msa1277110:intron | 30.0% | |
| ! | ACCTCATTTTATCGTATGTT+TGG | - | chr8_3:12247385-12247404 | None:intergenic | 30.0% |
| ! | TTACTTTACTTTGGCTAGTT+TGG | - | chr8_3:12247558-12247577 | None:intergenic | 30.0% |
| ! | GAAAATGGAGTTTTTCTCAA+TGG | - | chr8_3:12247588-12247607 | None:intergenic | 30.0% |
| GAGGGTTACTTATTAGAATA+AGG | - | chr8_3:12247611-12247630 | None:intergenic | 30.0% | |
| ! | ACTATCTTTTTGTCTGAATC+AGG | + | chr8_3:12247732-12247751 | Msa1277110:intron | 30.0% |
| GCTATACATGTTCATGTTTA+AGG | - | chr8_3:12247764-12247783 | None:intergenic | 30.0% | |
| GAACATGTATAGCAAAAACA+AGG | + | chr8_3:12247771-12247790 | Msa1277110:CDS | 30.0% | |
| TTAGAAGGAAAACTCTTTCT+TGG | - | chr8_3:12248048-12248067 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTTTCCTTCTAAA+TGG | + | chr8_3:12248049-12248068 | Msa1277110:CDS | 30.0% |
| !! | TAATGGCTTTAAGCAGAAAA+TGG | + | chr8_3:12248188-12248207 | Msa1277110:CDS | 30.0% |
| TTTAAGCAGAAAATGGATGA+GGG | + | chr8_3:12248195-12248214 | Msa1277110:CDS | 30.0% | |
| ! | TCAAAGTTCTTCTTCAAGTT+TGG | + | chr8_3:12248278-12248297 | Msa1277110:CDS | 30.0% |
| ! | TTTTTGCAAATTATTACCGG+TGG | + | chr8_3:12248747-12248766 | Msa1277110:intron | 30.0% |
| ! | TTTTGCAAATTATTACCGGT+GGG | + | chr8_3:12248748-12248767 | Msa1277110:intron | 30.0% |
| CTTGAGAAGAGTTTATAAAG+AGG | + | chr8_3:12248800-12248819 | Msa1277110:intron | 30.0% | |
| CTAACTCAAACTTACAAAAC+CGG | - | chr8_3:12248847-12248866 | None:intergenic | 30.0% | |
| ATAGTATCATTGTTAGTGTC+TGG | + | chr8_3:12249002-12249021 | Msa1277110:intron | 30.0% | |
| CAGACACTAACAATATTCAT+GGG | - | chr8_3:12249034-12249053 | None:intergenic | 30.0% | |
| ATTAGCCCATGAATGAAAAT+TGG | + | chr8_3:12249056-12249075 | Msa1277110:intron | 30.0% | |
| ! | CTCTTCCAATTTTCATTCAT+GGG | - | chr8_3:12249064-12249083 | None:intergenic | 30.0% |
| ! | TCTCTTCCAATTTTCATTCA+TGG | - | chr8_3:12249065-12249084 | None:intergenic | 30.0% |
| TTAAATGGCCAAATAGAAAG+AGG | - | chr8_3:12249097-12249116 | None:intergenic | 30.0% | |
| TATTTGGCCATTTAATGACA+AGG | + | chr8_3:12249102-12249121 | Msa1277110:intron | 30.0% | |
| ! | AGCCAATTTTACCAAAATTC+AGG | + | chr8_3:12249257-12249276 | Msa1277110:CDS | 30.0% |
| TATTCAGAACCAACAAAAGA+AGG | + | chr8_3:12249280-12249299 | Msa1277110:CDS | 30.0% | |
| GAAGTTAAACACAAAGATGT+TGG | + | chr8_3:12249364-12249383 | Msa1277110:CDS | 30.0% | |
| TTATCTAACATCGATAGCAA+TGG | + | chr8_3:12249499-12249518 | Msa1277110:CDS | 30.0% | |
| TGGAACAACAAAGTATGATT+TGG | + | chr8_3:12249576-12249595 | Msa1277110:CDS | 30.0% | |
| !!! | CTTGACTTAGGTTATTTTAG+CGG | + | chr8_3:12249814-12249833 | Msa1277110:intron | 30.0% |
| TTAAAAATCAAACCTGCATC+AGG | - | chr8_3:12249892-12249911 | None:intergenic | 30.0% | |
| AGTACAGGAAAATGATACAT+AGG | + | chr8_3:12249995-12250014 | Msa1277110:intron | 30.0% | |
| ! | TGCATTCATCTTATTTGCAT+TGG | + | chr8_3:12250058-12250077 | Msa1277110:intron | 30.0% |
| ATTGTGATTTGAATTGATGC+AGG | + | chr8_3:12250091-12250110 | Msa1277110:intron | 30.0% | |
| AAGAAGCAAAAATTCAAGCT+TGG | + | chr8_3:12250124-12250143 | Msa1277110:CDS | 30.0% | |
| !!! | ACATTTTGGTTAGTTTGCAA+TGG | + | chr8_3:12250224-12250243 | Msa1277110:intron | 30.0% |
| AACTACTTAATTTAGAGGGT+GGG | - | chr8_3:12250418-12250437 | None:intergenic | 30.0% | |
| TAACTACTTAATTTAGAGGG+TGG | - | chr8_3:12250419-12250438 | None:intergenic | 30.0% | |
| AGATTTATGTGTAATGCACA+TGG | + | chr8_3:12250570-12250589 | Msa1277110:intron | 30.0% | |
| GATTTATGTGTAATGCACAT+GGG | + | chr8_3:12250571-12250590 | Msa1277110:intron | 30.0% | |
| AAATAAGCCAGCAATATATC+CGG | - | chr8_3:12250718-12250737 | None:intergenic | 30.0% | |
| AAATGGTATCCATGAATTGA+GGG | - | chr8_3:12250751-12250770 | None:intergenic | 30.0% | |
| TAAATGGTATCCATGAATTG+AGG | - | chr8_3:12250752-12250771 | None:intergenic | 30.0% | |
| ! | AATCCAAGTTGAAAACTACT+AGG | + | chr8_3:12251056-12251075 | Msa1277110:intron | 30.0% |
| ! | TGTGGTTTTCAATGATTTTG+TGG | - | chr8_3:12251127-12251146 | None:intergenic | 30.0% |
| ACAACAACACTTAGAACAAA+TGG | + | chr8_3:12251351-12251370 | Msa1277110:CDS | 30.0% | |
| ! | GTTTAATGGTTGTTATTGCA+AGG | - | chr8_3:12251457-12251476 | None:intergenic | 30.0% |
| GGAAAATCTGATGTGAAGAT+TGG | + | chr8_3:12246535-12246554 | Msa1277110:CDS | 35.0% | |
| AAATCTGATGTGAAGATTGG+GGG | + | chr8_3:12246538-12246557 | Msa1277110:CDS | 35.0% | |
| TTCAACGTGTATATCATGGA+GGG | + | chr8_3:12246569-12246588 | Msa1277110:intron | 35.0% | |
| ! | CTCTTTGTTTGATTCACGAT+TGG | + | chr8_3:12246676-12246695 | Msa1277110:intron | 35.0% |
| ATGAAATTACCTGCTATCAC+AGG | - | chr8_3:12246813-12246832 | None:intergenic | 35.0% | |
| GTGATAGCAGGTAATTTCAT+TGG | + | chr8_3:12246813-12246832 | Msa1277110:intron | 35.0% | |
| GTAATTTCATTGGTCCAAGT+TGG | + | chr8_3:12246823-12246842 | Msa1277110:intron | 35.0% | |
| !!! | GTTTATGTTTTGGTCCAACT+TGG | - | chr8_3:12246840-12246859 | None:intergenic | 35.0% |
| AGTTGGACCAAAACATAAAC+TGG | + | chr8_3:12246840-12246859 | Msa1277110:intron | 35.0% | |
| ATAAACTGGTCCAAGCTAAA+GGG | + | chr8_3:12246854-12246873 | Msa1277110:intron | 35.0% | |
| ! | TAGTTTGTCTCTCTTTCCTA+GGG | - | chr8_3:12246881-12246900 | None:intergenic | 35.0% |
| !! | TTAGTTTGTCTCTCTTTCCT+AGG | - | chr8_3:12246882-12246901 | None:intergenic | 35.0% |
| AGACAAACTAAGTCCAAAAC+AGG | + | chr8_3:12246891-12246910 | Msa1277110:intron | 35.0% | |
| ! | CCAAAAATACAGTCCTGTTT+TGG | - | chr8_3:12246907-12246926 | None:intergenic | 35.0% |
| ! | CCAAAACAGGACTGTATTTT+TGG | + | chr8_3:12246904-12246923 | Msa1277110:intron | 35.0% |
| AGGAAAAAAGGACATAGACT+TGG | - | chr8_3:12246971-12246990 | None:intergenic | 35.0% | |
| ACTTCACAATTAGAGTGCAT+CGG | + | chr8_3:12247320-12247339 | Msa1277110:intron | 35.0% | |
| ATAACTCAAATGTGTGTCGT+CGG | + | chr8_3:12247478-12247497 | Msa1277110:intron | 35.0% | |
| ! | ATGGAGTTTTTCTCAATGGA+GGG | - | chr8_3:12247584-12247603 | None:intergenic | 35.0% |
| ! | AATGGAGTTTTTCTCAATGG+AGG | - | chr8_3:12247585-12247604 | None:intergenic | 35.0% |
| GGAAATGAAGCTAAAAGACA+TGG | - | chr8_3:12247668-12247687 | None:intergenic | 35.0% | |
| TACATGTTCATGTTTAAGGG+TGG | - | chr8_3:12247760-12247779 | None:intergenic | 35.0% | |
| ! | CAAACTCAGAGGTTTCTTTT+AGG | - | chr8_3:12247861-12247880 | None:intergenic | 35.0% |
| TAAAGACTTGACAAACTCAG+AGG | - | chr8_3:12247872-12247891 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTAGCATTGT+TGG | + | chr8_3:12248012-12248031 | Msa1277110:CDS | 35.0% | |
| AAGGAAAACTCTTTCTTGGA+AGG | - | chr8_3:12248044-12248063 | None:intergenic | 35.0% | |
| AATGGGATGATGCTGAAAAA+TGG | + | chr8_3:12248067-12248086 | Msa1277110:CDS | 35.0% | |
| !! | AAAGTGTTGCTATTATGAGC+TGG | - | chr8_3:12248120-12248139 | None:intergenic | 35.0% |
| GGAACAAGACAATGTGATAA+TGG | + | chr8_3:12248171-12248190 | Msa1277110:CDS | 35.0% | |
| CTTTAAGCAGAAAATGGATG+AGG | + | chr8_3:12248194-12248213 | Msa1277110:CDS | 35.0% | |
| !! | AGGGTTTTTCAGAGAAATCA+AGG | + | chr8_3:12248214-12248233 | Msa1277110:CDS | 35.0% |
| !! | GGGTTTTTCAGAGAAATCAA+GGG | + | chr8_3:12248215-12248234 | Msa1277110:CDS | 35.0% |
| TTTAGTACTATGTCTGTTGG+TGG | - | chr8_3:12248345-12248364 | None:intergenic | 35.0% | |
| ! | CCTTTTAGTACTATGTCTGT+TGG | - | chr8_3:12248348-12248367 | None:intergenic | 35.0% |
| CCAACAGACATAGTACTAAA+AGG | + | chr8_3:12248345-12248364 | Msa1277110:CDS | 35.0% | |
| CAGACATAGTACTAAAAGGT+AGG | + | chr8_3:12248349-12248368 | Msa1277110:intron | 35.0% | |
| GAGAAGAGTTTATAAAGAGG+AGG | + | chr8_3:12248803-12248822 | Msa1277110:intron | 35.0% | |
| !! | CGGTTTTGTAAGTTTGAGTT+AGG | + | chr8_3:12248845-12248864 | Msa1277110:intron | 35.0% |
| GTTGGTATCATTGTTAGTGT+CGG | + | chr8_3:12248894-12248913 | Msa1277110:intron | 35.0% | |
| TTGGTATCATTGTTAGTGTC+GGG | + | chr8_3:12248895-12248914 | Msa1277110:intron | 35.0% | |
| CCAGACACTAACAATATTCA+TGG | - | chr8_3:12249035-12249054 | None:intergenic | 35.0% | |
| CCATGAATATTGTTAGTGTC+TGG | + | chr8_3:12249032-12249051 | Msa1277110:intron | 35.0% | |
| CCAAATAGAAAGAGGAAGTT+GGG | - | chr8_3:12249089-12249108 | None:intergenic | 35.0% | |
| !!! | GGTTCTGAATACCTGAATTT+TGG | - | chr8_3:12249271-12249290 | None:intergenic | 35.0% |
| ATTCAGAAATCAAGCTTGTG+AGG | + | chr8_3:12249309-12249328 | Msa1277110:CDS | 35.0% | |
| TCGATGTTAGATAATGCCAA+TGG | - | chr8_3:12249493-12249512 | None:intergenic | 35.0% | |
| TAACCTAAGTCAAGAAAGTG+TGG | - | chr8_3:12249808-12249827 | None:intergenic | 35.0% | |
| TGTCAATTCATCGACGAAAA+TGG | - | chr8_3:12249946-12249965 | None:intergenic | 35.0% | |
| CTGAAGTAGTAAAGAAGGTA+AGG | - | chr8_3:12249969-12249988 | None:intergenic | 35.0% | |
| GAAAGCTGAAGTAGTAAAGA+AGG | - | chr8_3:12249974-12249993 | None:intergenic | 35.0% | |
| ATCATTACATCGAAAACCGT+TGG | - | chr8_3:12250493-12250512 | None:intergenic | 35.0% | |
| ! | AACGGTTTTCGATGTAATGA+TGG | + | chr8_3:12250492-12250511 | Msa1277110:intron | 35.0% |
| CCTTGGATTCTACATACTTT+AGG | - | chr8_3:12250614-12250633 | None:intergenic | 35.0% | |
| CCTAAAGTATGTAGAATCCA+AGG | + | chr8_3:12250611-12250630 | Msa1277110:intron | 35.0% | |
| ACTACAATAGAATGCATTGC+CGG | + | chr8_3:12250696-12250715 | Msa1277110:intron | 35.0% | |
| !! | TGGACTAGTATTGTATTGAC+TGG | - | chr8_3:12250797-12250816 | None:intergenic | 35.0% |
| ! | ATGCCTAGTAGTTTTCAACT+TGG | - | chr8_3:12251062-12251081 | None:intergenic | 35.0% |
| ! | CTAGGTTTGATCTCATCTTT+TGG | - | chr8_3:12251264-12251283 | None:intergenic | 35.0% |
| TCTTCATCAACTTCTCTTCT+AGG | - | chr8_3:12251282-12251301 | None:intergenic | 35.0% | |
| !! | TAGAAGAGAAGTTGATGAAG+AGG | + | chr8_3:12251281-12251300 | Msa1277110:CDS | 35.0% |
| ! | GGCATAACTCACAATTTTCT+AGG | + | chr8_3:12251410-12251429 | Msa1277110:CDS | 35.0% |
| ! | CACATCAGATTTTCCAACGA+TGG | - | chr8_3:12246530-12246549 | None:intergenic | 40.0% |
| GGAGTTCAACGTGTATATCA+TGG | + | chr8_3:12246565-12246584 | Msa1277110:intron | 40.0% | |
| GTTCAACGTGTATATCATGG+AGG | + | chr8_3:12246568-12246587 | Msa1277110:intron | 40.0% | |
| TGGGTTATAGGTGCATGATA+TGG | + | chr8_3:12246771-12246790 | Msa1277110:intron | 40.0% | |
| GGGTTATAGGTGCATGATAT+GGG | + | chr8_3:12246772-12246791 | Msa1277110:intron | 40.0% | |
| ! | GCTTGGACCAGTTTATGTTT+TGG | - | chr8_3:12246850-12246869 | None:intergenic | 40.0% |
| CATAAACTGGTCCAAGCTAA+AGG | + | chr8_3:12246853-12246872 | Msa1277110:intron | 40.0% | |
| AAAGTGACTATGAGAAGCAG+TGG | - | chr8_3:12247011-12247030 | None:intergenic | 40.0% | |
| CTTCACAATTAGAGTGCATC+GGG | + | chr8_3:12247321-12247340 | Msa1277110:intron | 40.0% | |
| GTGTGTTTCAAACAGCATGA+CGG | - | chr8_3:12247360-12247379 | None:intergenic | 40.0% | |
| ! | GGAGGGAAGTTACTTTACTT+TGG | - | chr8_3:12247567-12247586 | None:intergenic | 40.0% |
| ! | TTTAGGTTCAGCTTGCAAAG+TGG | - | chr8_3:12247844-12247863 | None:intergenic | 40.0% |
| ! | TCTGCATTGGTGTTTGAAAC+TGG | - | chr8_3:12247895-12247914 | None:intergenic | 40.0% |
| ! | GAGTCTTCTGTTTTCTGCAT+TGG | - | chr8_3:12247908-12247927 | None:intergenic | 40.0% |
| GAAGAACTGAAGCTGAAAAG+TGG | - | chr8_3:12247988-12248007 | None:intergenic | 40.0% | |
| TCAGCATCATCCCATTTAGA+AGG | - | chr8_3:12248063-12248082 | None:intergenic | 40.0% | |
| ! | GCTGTTTCATCTTCAGAATC+TGG | + | chr8_3:12248150-12248169 | Msa1277110:CDS | 40.0% |
| TTGGACCACAATAACAGTGT+TGG | + | chr8_3:12248297-12248316 | Msa1277110:CDS | 40.0% | |
| AAGCTCCAACACTGTTATTG+TGG | - | chr8_3:12248305-12248324 | None:intergenic | 40.0% | |
| CACTCTTAGGTCAAGTCAAT+GGG | - | chr8_3:12248603-12248622 | None:intergenic | 40.0% | |
| ACACTCTTAGGTCAAGTCAA+TGG | - | chr8_3:12248604-12248623 | None:intergenic | 40.0% | |
| ! | TTGACTTGACCTAAGAGTGT+AGG | + | chr8_3:12248604-12248623 | Msa1277110:intron | 40.0% |
| TTCAACCAACCTACACTCTT+AGG | - | chr8_3:12248616-12248635 | None:intergenic | 40.0% | |
| GAGTTATGTAGCACTCATAC+TGG | + | chr8_3:12248675-12248694 | Msa1277110:intron | 40.0% | |
| GATTTAGTCCCATATCGGAT+AGG | + | chr8_3:12248770-12248789 | Msa1277110:intron | 40.0% | |
| GAATCCTACCTATCCGATAT+GGG | - | chr8_3:12248781-12248800 | None:intergenic | 40.0% | |
| AGAATCCTACCTATCCGATA+TGG | - | chr8_3:12248782-12248801 | None:intergenic | 40.0% | |
| !! | ACTTACAAAACCGGCTTGTA+CGG | - | chr8_3:12248838-12248857 | None:intergenic | 40.0% |
| ACTGACACAATTGATGTCAC+GGG | - | chr8_3:12248872-12248891 | None:intergenic | 40.0% | |
| CACTGACACAATTGATGTCA+CGG | - | chr8_3:12248873-12248892 | None:intergenic | 40.0% | |
| CATCAATTGTGTCAGTGTGT+TGG | + | chr8_3:12248876-12248895 | Msa1277110:intron | 40.0% | |
| CCCAACTTCCTCTTTCTATT+TGG | + | chr8_3:12249086-12249105 | Msa1277110:intron | 40.0% | |
| GCCAAATAGAAAGAGGAAGT+TGG | - | chr8_3:12249090-12249109 | None:intergenic | 40.0% | |
| AGCAGTCACGATAATAGTTG+CGG | + | chr8_3:12249139-12249158 | Msa1277110:intron | 40.0% | |
| !! | ATGATTTGGTCGCACCAAAT+TGG | + | chr8_3:12249590-12249609 | Msa1277110:CDS | 40.0% |
| TCTTCACTTGAGCTCCAATT+TGG | - | chr8_3:12249607-12249626 | None:intergenic | 40.0% | |
| AAATTGGAGCTCAAGTGAAG+AGG | + | chr8_3:12249606-12249625 | Msa1277110:CDS | 40.0% | |
| TGATTGTATAGCTGCCAGTT+GGG | + | chr8_3:12249684-12249703 | Msa1277110:CDS | 40.0% | |
| ! | AGAAGAACAAGTGCTGTCTT+AGG | + | chr8_3:12249716-12249735 | Msa1277110:CDS | 40.0% |
| ! | AGTCAAGAAAGTGTGGATCA+TGG | - | chr8_3:12249801-12249820 | None:intergenic | 40.0% |
| GATCCACACTTTCTTGACTT+AGG | + | chr8_3:12249802-12249821 | Msa1277110:intron | 40.0% | |
| ! | CTACTTCAGCTTTCAAGTAC+AGG | + | chr8_3:12249980-12249999 | Msa1277110:intron | 40.0% |
| ! | CTTCTGCTTTAGCATTTTGG+AGG | - | chr8_3:12250155-12250174 | None:intergenic | 40.0% |
| ! | TGGCTTCTGCTTTAGCATTT+TGG | - | chr8_3:12250158-12250177 | None:intergenic | 40.0% |
| AAAATGCTAAAGCAGAAGCC+AGG | + | chr8_3:12250157-12250176 | Msa1277110:CDS | 40.0% | |
| !!! | TACCTCAAGCTTTTTTGACC+TGG | - | chr8_3:12250178-12250197 | None:intergenic | 40.0% |
| AGGTCTAGTAATGTGGTCAA+AGG | - | chr8_3:12250380-12250399 | None:intergenic | 40.0% | |
| GAGGTTAAGGTCTAGTAATG+TGG | - | chr8_3:12250387-12250406 | None:intergenic | 40.0% | |
| ACTTAATTTAGAGGGTGGGT+GGG | - | chr8_3:12250414-12250433 | None:intergenic | 40.0% | |
| TACTTAATTTAGAGGGTGGG+TGG | - | chr8_3:12250415-12250434 | None:intergenic | 40.0% | |
| ATCGTTTGATCGTGATCCAA+CGG | + | chr8_3:12250474-12250493 | Msa1277110:intron | 40.0% | |
| ! | GTTCAAGCTGCTTTGCAAAA+GGG | - | chr8_3:12250536-12250555 | None:intergenic | 40.0% |
| ! | AGTTCAAGCTGCTTTGCAAA+AGG | - | chr8_3:12250537-12250556 | None:intergenic | 40.0% |
| AAGCAGCTTGAACTGTTTGT+AGG | + | chr8_3:12250543-12250562 | Msa1277110:intron | 40.0% | |
| TATGTGTAATGCACATGGGA+TGG | + | chr8_3:12250575-12250594 | Msa1277110:intron | 40.0% | |
| ATGTGTAATGCACATGGGAT+GGG | + | chr8_3:12250576-12250595 | Msa1277110:intron | 40.0% | |
| ATGTACACTGTATATGGCCT+TGG | - | chr8_3:12250631-12250650 | None:intergenic | 40.0% | |
| ! | GTTGATGAAGAGGATGTCAA+TGG | + | chr8_3:12251291-12251310 | Msa1277110:CDS | 40.0% |
| ! | TTTTCTAGGCACAGTTCATG+TGG | + | chr8_3:12251424-12251443 | Msa1277110:CDS | 40.0% |
| TCATCGAGAAGAACCATCGT+TGG | + | chr8_3:12246514-12246533 | Msa1277110:CDS | 45.0% | |
| ! | AGGGTTTACTAGCCTGTTGT+TGG | + | chr8_3:12246751-12246770 | Msa1277110:intron | 45.0% |
| ! | GGGTTTACTAGCCTGTTGTT+GGG | + | chr8_3:12246752-12246771 | Msa1277110:intron | 45.0% |
| CTAGCCTGTTGTTGGGTTAT+AGG | + | chr8_3:12246759-12246778 | Msa1277110:intron | 45.0% | |
| TGCACCTATAACCCAACAAC+AGG | - | chr8_3:12246766-12246785 | None:intergenic | 45.0% | |
| AAGCTGAAAAGTGGTCTACC+AGG | - | chr8_3:12247979-12247998 | None:intergenic | 45.0% | |
| ! | AACAGTGTTGGAGCTTTCCA+TGG | + | chr8_3:12248309-12248328 | Msa1277110:CDS | 45.0% |
| ! | ACAGTGTTGGAGCTTTCCAT+GGG | + | chr8_3:12248310-12248329 | Msa1277110:CDS | 45.0% |
| ! | CTTGACCTAAGAGTGTAGGT+TGG | + | chr8_3:12248608-12248627 | Msa1277110:intron | 45.0% |
| TGTGACAACCACATACGTGT+TGG | - | chr8_3:12248713-12248732 | None:intergenic | 45.0% | |
| GATATGGGACTAAATCCCAC+CGG | - | chr8_3:12248766-12248785 | None:intergenic | 45.0% | |
| GGTGGGATTTAGTCCCATAT+CGG | + | chr8_3:12248765-12248784 | Msa1277110:intron | 45.0% | |
| TAGTCCCATATCGGATAGGT+AGG | + | chr8_3:12248774-12248793 | Msa1277110:intron | 45.0% | |
| CTGACACAATTGATGTCACG+GGG | - | chr8_3:12248871-12248890 | None:intergenic | 45.0% | |
| GGCACAGAAATGACTCCATT+AGG | + | chr8_3:12249385-12249404 | Msa1277110:CDS | 45.0% | |
| ! | GAAGTGGTGGAACTTCCTAA+TGG | - | chr8_3:12249403-12249422 | None:intergenic | 45.0% |
| TGTGTGACATCTTGAAGTGG+TGG | - | chr8_3:12249416-12249435 | None:intergenic | 45.0% | |
| GCAGGAGATGAACTCTTGAA+CGG | - | chr8_3:12249439-12249458 | None:intergenic | 45.0% | |
| !! | ACCTACTAGCAGGAGTGTTA+TGG | - | chr8_3:12249465-12249484 | None:intergenic | 45.0% |
| CTCAAGTGAAGAGGAGGAAA+AGG | + | chr8_3:12249615-12249634 | Msa1277110:CDS | 45.0% | |
| CTGATTGTATAGCTGCCAGT+TGG | + | chr8_3:12249683-12249702 | Msa1277110:CDS | 45.0% | |
| CTTCTCATCATCTTCCCAAC+TGG | - | chr8_3:12249701-12249720 | None:intergenic | 45.0% | |
| AGCCAGGTCAAAAAAGCTTG+AGG | + | chr8_3:12250173-12250192 | Msa1277110:CDS | 45.0% | |
| TTAATTTAGAGGGTGGGTGG+GGG | - | chr8_3:12250412-12250431 | None:intergenic | 45.0% | |
| CTTAATTTAGAGGGTGGGTG+GGG | - | chr8_3:12250413-12250432 | None:intergenic | 45.0% | |
| CAGCTTGAACTGTTTGTAGG+TGG | + | chr8_3:12250546-12250565 | Msa1277110:intron | 45.0% | |
| TGCATTGCCGGATATATTGC+TGG | + | chr8_3:12250708-12250727 | Msa1277110:intron | 45.0% | |
| TGGTATCCATGAATTGAGGG+TGG | - | chr8_3:12250748-12250767 | None:intergenic | 45.0% | |
| CTAGTCCACTTCTGTGTTTG+AGG | + | chr8_3:12250809-12250828 | Msa1277110:intron | 45.0% | |
| GTGATCCTCAAACACAGAAG+TGG | - | chr8_3:12250817-12250836 | None:intergenic | 45.0% | |
| AGAGGATGTCAATGGTTCAC+AGG | + | chr8_3:12251299-12251318 | Msa1277110:CDS | 45.0% | |
| AATGGTTCACAGGAAAGCTG+AGG | + | chr8_3:12251309-12251328 | Msa1277110:CDS | 45.0% | |
| TTCACAGGAAAGCTGAGGAT+TGG | + | chr8_3:12251314-12251333 | Msa1277110:CDS | 45.0% | |
| GATGTGAAGATTGGGGGAAG+TGG | + | chr8_3:12246544-12246563 | Msa1277110:CDS | 50.0% | |
| GGTGCATGATATGGGACAAC+AGG | + | chr8_3:12246780-12246799 | Msa1277110:intron | 50.0% | |
| GGAAGAGAACCTGTGATAGC+AGG | + | chr8_3:12246801-12246820 | Msa1277110:intron | 50.0% | |
| TTCCTAGGGTCCCTTTAGCT+TGG | - | chr8_3:12246867-12246886 | None:intergenic | 50.0% | |
| CTAGAAGCTCCTTCTACACC+TGG | + | chr8_3:12247958-12247977 | Msa1277110:CDS | 50.0% | |
| AGTGGTCTACCAGGTGTAGA+AGG | - | chr8_3:12247970-12247989 | None:intergenic | 50.0% | |
| ! | TTGGTGGACATGAGATCCCA+TGG | - | chr8_3:12248329-12248348 | None:intergenic | 50.0% |
| ACCACATACGTGTTGGACAC+CGG | - | chr8_3:12248706-12248725 | None:intergenic | 50.0% | |
| CGGTGTGTGACATCTTGAAG+TGG | - | chr8_3:12249419-12249438 | None:intergenic | 50.0% | |
| GCCATAACACTCCTGCTAGT+AGG | + | chr8_3:12249461-12249480 | Msa1277110:CDS | 50.0% | |
| AACACTCCTGCTAGTAGGTC+AGG | + | chr8_3:12249466-12249485 | Msa1277110:CDS | 50.0% | |
| AATGGTCCTGACCTACTAGC+AGG | - | chr8_3:12249475-12249494 | None:intergenic | 50.0% | |
| TGCTAGTAGGTCAGGACCAT+TGG | + | chr8_3:12249474-12249493 | Msa1277110:CDS | 50.0% | |
| TTGGAGCTCAAGTGAAGAGG+AGG | + | chr8_3:12249609-12249628 | Msa1277110:CDS | 50.0% | |
| ATCAAACCTGCATCAGGTCG+AGG | - | chr8_3:12249886-12249905 | None:intergenic | 50.0% | |
| GTCCAAGCTAAAGGGACCCT+AGG | + | chr8_3:12246862-12246881 | Msa1277110:intron | 55.0% | |
| AGCACTCATACTGGCGTGTC+CGG | + | chr8_3:12248684-12248703 | Msa1277110:intron | 55.0% | |
| TCCGGTGTCCAACACGTATG+TGG | + | chr8_3:12248702-12248721 | Msa1277110:intron | 55.0% | |
| !! | CAAAACCGGCTTGTACGGTG+AGG | - | chr8_3:12248833-12248852 | None:intergenic | 55.0% |
| GTTGAACCTCGACCTGATGC+AGG | + | chr8_3:12249877-12249896 | Msa1277110:intron | 55.0% | |
| CATGAATTGAGGGTGGCTCG+AGG | - | chr8_3:12250741-12250760 | None:intergenic | 55.0% | |
| CTCGAGCCACCCTCAATTCA+TGG | + | chr8_3:12250739-12250758 | Msa1277110:intron | 55.0% | |
| GCACTCCTCACCGTACAAGC+CGG | + | chr8_3:12248825-12248844 | Msa1277110:intron | 60.0% | |
| GTGGGTGGGGGTAGAGGTTA+AGG | - | chr8_3:12250400-12250419 | None:intergenic | 60.0% | |
| !! | GCAGGAGTGTTATGGCGCGC+AGG | - | chr8_3:12249457-12249476 | None:intergenic | 65.0% |
| TAGAGGGTGGGTGGGGGTAG+AGG | - | chr8_3:12250406-12250425 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12246508 | 12251517 | 12246508 | ID=Msa1277110;Name=Msa1277110 |
| chr8_3 | mRNA | 12246508 | 12251517 | 12246508 | ID=Msa1277110-mRNA-1;Parent=Msa1277110;Name=Msa1277110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.75|0.6|0.8|1|1|5|43|495 |
| chr8_3 | exon | 12246508 | 12246576 | 12246508 | ID=Msa1277110-mRNA-1:exon:4882;Parent=Msa1277110-mRNA-1 |
| chr8_3 | exon | 12247754 | 12248366 | 12247754 | ID=Msa1277110-mRNA-1:exon:4883;Parent=Msa1277110-mRNA-1 |
| chr8_3 | exon | 12249236 | 12249737 | 12249236 | ID=Msa1277110-mRNA-1:exon:4884;Parent=Msa1277110-mRNA-1 |
| chr8_3 | exon | 12250113 | 12250194 | 12250113 | ID=Msa1277110-mRNA-1:exon:4885;Parent=Msa1277110-mRNA-1 |
| chr8_3 | exon | 12251253 | 12251517 | 12251253 | ID=Msa1277110-mRNA-1:exon:4886;Parent=Msa1277110-mRNA-1 |
| chr8_3 | CDS | 12246508 | 12246576 | 12246508 | ID=Msa1277110-mRNA-1:cds;Parent=Msa1277110-mRNA-1 |
| chr8_3 | CDS | 12247754 | 12248366 | 12247754 | ID=Msa1277110-mRNA-1:cds;Parent=Msa1277110-mRNA-1 |
| chr8_3 | CDS | 12249236 | 12249737 | 12249236 | ID=Msa1277110-mRNA-1:cds;Parent=Msa1277110-mRNA-1 |
| chr8_3 | CDS | 12250113 | 12250194 | 12250113 | ID=Msa1277110-mRNA-1:cds;Parent=Msa1277110-mRNA-1 |
| chr8_3 | CDS | 12251253 | 12251474 | 12251253 | ID=Msa1277110-mRNA-1:cds;Parent=Msa1277110-mRNA-1 |
| chr8_3 | three_prime_UTR | 12251475 | 12251517 | 12251475 | ID=Msa1277110-mRNA-1:three_prime_utr;Parent=Msa1277110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
