AlfalfaGEDB | Msa1224340

M. sativa cultivar zhongmu-4 / Msa1224340

KEGG: -
GO: GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048856 GO:0071554 GO:0071669 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513
PFAM: PF07058.14

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224340	KEH32682.1	63.823	293	19	5	1	206	293	585	6.98e-107	329

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224340	sp\|Q8GYX3\|MP705_ARATH	37.168	226	70	7	1	168	273	484	4.80e-26	107

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224340	A0A072USN7	63.823	293	19	5	1	206	293	585	3.33e-107	329

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0074700	Msa1224340	0.808317	3.286402e-50	-8.615850e-47
Msa0090100	Msa1224340	0.803937	2.746954e-49	-8.615850e-47
Msa0095560	Msa1224340	0.800970	1.122391e-48	-8.615850e-47
Msa0607540	Msa1224340	0.810534	1.099149e-50	-8.615850e-47
Msa0610890	Msa1224340	0.820774	5.742428e-53	-8.615850e-47
Msa0648080	Msa1224340	0.802813	4.694389e-49	-8.615850e-47
Msa0672690	Msa1224340	0.817063	4.004588e-52	-8.615850e-47
Msa0688070	Msa1224340	0.820407	6.971810e-53	-8.615850e-47
Msa0692230	Msa1224340	0.803430	3.499271e-49	-8.615850e-47
Msa0701900	Msa1224340	0.817012	4.112305e-52	-8.615850e-47
Msa0766630	Msa1224340	0.801512	8.693068e-49	-8.615850e-47
Msa0790510	Msa1224340	0.825942	3.559324e-54	-8.615850e-47
Msa0122590	Msa1224340	0.807391	5.173201e-50	-8.615850e-47
Msa0157310	Msa1224340	0.810425	1.159904e-50	-8.615850e-47
Msa0166870	Msa1224340	0.827022	1.967548e-54	-8.615850e-47
Msa0188830	Msa1224340	0.805053	1.607523e-49	-8.615850e-47
Msa0201070	Msa1224340	0.807353	5.269966e-50	-8.615850e-47
Msa0220580	Msa1224340	0.812180	4.826162e-51	-8.615850e-47
Msa0223010	Msa1224340	0.801733	7.834145e-49	-8.615850e-47
Msa0233300	Msa1224340	0.806385	8.438952e-50	-8.615850e-47
Msa0373450	Msa1224340	0.805490	1.301789e-49	-8.615850e-47
Msa0379640	Msa1224340	0.812369	4.389777e-51	-8.615850e-47
Msa0477130	Msa1224340	-0.806017	1.008804e-49	-8.615850e-47
Msa1075220	Msa1224340	-0.800324	1.520099e-48	-8.615850e-47
Msa1082500	Msa1224340	0.811280	7.575857e-51	-8.615850e-47
Msa0243710	Msa1224340	0.804473	2.123758e-49	-8.615850e-47
Msa0270100	Msa1224340	0.803247	3.818263e-49	-8.615850e-47
Msa0288100	Msa1224340	0.812350	4.431945e-51	-8.615850e-47
Msa0339620	Msa1224340	0.808820	2.566607e-50	-8.615850e-47
Msa1154280	Msa1224340	0.803073	4.148429e-49	-8.615850e-47
Msa1224320	Msa1224340	0.800669	1.293037e-48	-8.615850e-47
Msa1224340	Msa1224480	0.820514	6.590452e-53	-8.615850e-47
Msa1224340	Msa1233890	0.825165	5.439670e-54	-8.615850e-47
Msa1224340	Msa1250890	0.803955	2.722752e-49	-8.615850e-47
Msa1224340	Msa1305340	0.807204	5.667225e-50	-8.615850e-47
Msa1224340	Msa1318990	0.804956	1.684265e-49	-8.615850e-47
Msa1224340	Msa1327550	0.814798	1.282178e-51	-8.615850e-47
Msa1224340	Msa1339450	0.806491	8.016112e-50	-8.615850e-47
Msa1224340	Msa1357530	0.808837	2.545571e-50	-8.615850e-47
Msa1224340	Msa1384350	0.804915	1.717790e-49	-8.615850e-47
Msa1224340	Msa1392260	0.818702	1.707973e-52	-8.615850e-47
Msa1224340	Msa1417980	0.904794	8.457519e-80	-8.615850e-47
Msa1224340	Msa1418000	0.805918	1.058626e-49	-8.615850e-47
Msa1224340	Msa1426470	0.955921	9.908374e-114	-8.615850e-47
Msa1224340	Msa1443880	0.922882	5.513151e-89	-8.615850e-47
Msa1224340	Msa1444740	0.802310	5.961086e-49	-8.615850e-47
Msa1224340	Msa1451620	-0.820788	5.699691e-53	-8.615850e-47
Msa1224340	Msa1454860	0.822853	1.896329e-53	-8.615850e-47
Msa1224340	Msa1464940	0.805067	1.596122e-49	-8.615850e-47
Msa0484780	Msa1224340	0.803895	2.802196e-49	-8.615850e-47
Msa0493630	Msa1224340	0.816659	4.934456e-52	-8.615850e-47
Msa0512900	Msa1224340	0.811762	5.953831e-51	-8.615850e-47
Msa0585230	Msa1224340	0.803886	2.814367e-49	-8.615850e-47
Msa0897880	Msa1224340	0.801750	7.771296e-49	-8.615850e-47
Msa0942080	Msa1224340	-0.802731	4.881906e-49	-8.615850e-47
Msa0972630	Msa1224340	0.832477	9.245694e-56	-8.615850e-47
Msa0976670	Msa1224340	0.801348	9.393790e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224340	MtrunA17_Chr4g0076251	61.511	278	20	5	1	191	293	570	5.91e-97	293
Msa1224340	MtrunA17_Chr2g0290411	39.789	284	64	9	1	191	280	549	3.23e-39	141
Msa1224340	MtrunA17_Chr8g0344311	34.400	250	84	11	1	172	320	567	6.75e-15	72.8
Msa1224340	MtrunA17_Chr8g0391771	32.411	253	87	10	1	172	324	573	3.28e-13	67.8
Msa1224340	MtrunA17_Chr1g0161371	30.279	251	95	8	1	172	319	568	3.55e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1224340	AT4G17220.1	37.168	226	70	7	1	168	273	484	4.88e-27	107
Msa1224340	AT1G24764.2	31.907	257	85	10	1	172	188	439	9.57e-14	69.7
Msa1224340	AT1G24764.3	31.907	257	85	10	1	172	400	651	1.29e-13	69.3
Msa1224340	AT1G24764.1	31.907	257	85	10	1	172	341	592	1.34e-13	69.3
Msa1224340	AT2G01750.2	29.496	278	94	10	1	188	340	605	9.03e-13	67.0
Msa1224340	AT2G01750.1	29.496	278	94	10	1	188	340	605	9.28e-13	66.6
Msa1224340	AT1G68060.1	28.571	266	108	8	1	187	333	595	3.29e-12	65.1

Find 44 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCACTATCAGCAACTTTACT+TGG	0.264053	8_1:-89148644	None:intergenic
ATAAGTTCCCCAACAGAAAA+TGG	0.325320	8_1:+89148452	Msa1224340:CDS
TTCACCATTTGCAATTCTAT+TGG	0.325874	8_1:-89147630	None:intergenic
TATCAGCCACACTAACCTTT+TGG	0.326069	8_1:-89149449	None:intergenic
AGTCATTTGGTTTCTTGCTT+TGG	0.339262	8_1:-89148769	None:intergenic
TGCAGTGACGATTTGGTGTC+AGG	0.351949	8_1:+89148794	Msa1224340:CDS
TGATATATTGACAGTTTGTT+TGG	0.367532	8_1:+89147514	Msa1224340:five_prime_UTR
TCTTCTAGCCATTGCTTGAC+AGG	0.383618	8_1:-89147689	None:intergenic
CCGCTCTACTTCCATGGACT+TGG	0.386322	8_1:-89149332	None:intergenic
CTTCACTTTCAGCATTGAAC+TGG	0.389403	8_1:-89148712	None:intergenic
TAATAAGTTCAGATGATAAC+AGG	0.405133	8_1:+89149404	Msa1224340:CDS
CAGAAAACATGTTGAAGAAA+AGG	0.410590	8_1:+89148619	Msa1224340:intron
GCTAGCAAGGGTAAAAGTTT+CGG	0.430627	8_1:+89147607	Msa1224340:five_prime_UTR
TCGTCACTGCACGAGTCATT+TGG	0.432134	8_1:-89148782	None:intergenic
TGAAAAGGAAAATGAGATAC+AGG	0.451771	8_1:+89148667	Msa1224340:CDS
AGTTGCTGATAGTGGTGAAA+AGG	0.454137	8_1:+89148652	Msa1224340:CDS
TTTCTTCCGCTCTACTTCCA+TGG	0.458047	8_1:-89149338	None:intergenic
TGACTCGTGCAGTGACGATT+TGG	0.459803	8_1:+89148787	Msa1224340:CDS
CTTCCAATCGCAGAAGCTCT+TGG	0.464587	8_1:-89148503	None:intergenic
CAACCAAGAGCTTCTGCGAT+TGG	0.480093	8_1:+89148500	Msa1224340:CDS
CACTAGAGAGGGAGCTAGCA+AGG	0.481581	8_1:+89147594	Msa1224340:five_prime_UTR
CCAAGTAAAGTTGCTGATAG+TGG	0.491571	8_1:+89148644	Msa1224340:CDS
TTTGTTTGGTTGATCTTATG+TGG	0.496728	8_1:+89147528	Msa1224340:five_prime_UTR
AGATGCAGCTGCTAGAGAAA+AGG	0.532223	8_1:+89149369	Msa1224340:CDS
GAAACAAAGACTCCTCCAAA+AGG	0.543913	8_1:+89149434	Msa1224340:CDS
TCGGCCAATAGAATTGCAAA+TGG	0.544219	8_1:+89147626	Msa1224340:five_prime_UTR
TGATCTTATGTGGTAACTTG+TGG	0.547591	8_1:+89147538	Msa1224340:five_prime_UTR
TGATGCACTGACCAAGTCCA+TGG	0.550345	8_1:+89149321	Msa1224340:CDS
AGAAGAGAGAAGGATTATGC+AGG	0.567503	8_1:+89147706	Msa1224340:CDS
TGCAGCTGCTAGAGAAAAGG+AGG	0.568762	8_1:+89149372	Msa1224340:CDS
AGCAATGGCTAGAAGAGAGA+AGG	0.577331	8_1:+89147696	Msa1224340:CDS
AGGTCATGCCTGTCAAGCAA+TGG	0.604618	8_1:+89147681	Msa1224340:exon
ATGAGAAAAGGACACTAGAG+AGG	0.607096	8_1:+89147582	Msa1224340:five_prime_UTR
GTATGATAGGCTGCAAAGAG+AGG	0.608475	8_1:+89148823	Msa1224340:CDS
ACTCCTCCAAAAGGTTAGTG+TGG	0.610939	8_1:+89149443	Msa1224340:CDS
ACTAGAGAGGGAGCTAGCAA+GGG	0.615439	8_1:+89147595	Msa1224340:five_prime_UTR
TGGTGAAGCTAATGAGTGGA+AGG	0.633476	8_1:+89147646	Msa1224340:five_prime_UTR
TGAGAAAAGGACACTAGAGA+GGG	0.660251	8_1:+89147583	Msa1224340:five_prime_UTR
AAAGGAAAATGAGATACAGG+TGG	0.667770	8_1:+89148670	Msa1224340:CDS
AGAAGCTCTTGGTTGTGATG+TGG	0.668929	8_1:-89148492	None:intergenic
CCAAGTCCATGGAAGTAGAG+CGG	0.682402	8_1:+89149332	Msa1224340:CDS
GTGGAAGGATGAAAATGACA+AGG	0.684047	8_1:+89147661	Msa1224340:five_prime_UTR
CAAATGGTGAAGCTAATGAG+TGG	0.695992	8_1:+89147642	Msa1224340:five_prime_UTR
AGTTCCCCAACAGAAAATGG+TGG	0.700541	8_1:+89148455	Msa1224340:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAAAATTGTAGTATTTA+AGG	-	chr8_1:89147795-89147814	None:intergenic	10.0%
!!	AAATAAAATTGTAGTATTTA+AGG	-	chr8_1:89147795-89147814	None:intergenic	10.0%
!!!	ATTTTATTTTGTTACTTATG+AGG	+	chr8_1:89147806-89147825	Msa1224340:intron	15.0%
!!	ATATACTGAAATAAATCTTA+AGG	+	chr8_1:89147855-89147874	Msa1224340:intron	15.0%
!!	TATACTGAAATAAATCTTAA+GGG	+	chr8_1:89147856-89147875	Msa1224340:intron	15.0%
!!	GAAGTATATTTCATATTAAT+AGG	-	chr8_1:89148597-89148616	None:intergenic	15.0%
!!!	TAATTTTCGTAAATTATTAC+CGG	+	chr8_1:89149056-89149075	Msa1224340:intron	15.0%
!!!	CATCTATTTCTTTTTTAAAA+TGG	-	chr8_1:89149164-89149183	None:intergenic	15.0%
!!!	ATTTTATTTTGTTACTTATG+AGG	+	chr8_1:89147806-89147825	Msa1224340:intron	15.0%
!!	ATATACTGAAATAAATCTTA+AGG	+	chr8_1:89147855-89147874	Msa1224340:intron	15.0%
!!	TATACTGAAATAAATCTTAA+GGG	+	chr8_1:89147856-89147875	Msa1224340:intron	15.0%
!!	GAAGTATATTTCATATTAAT+AGG	-	chr8_1:89148597-89148616	None:intergenic	15.0%
!!!	TAATTTTCGTAAATTATTAC+CGG	+	chr8_1:89149056-89149075	Msa1224340:intron	15.0%
!!!	CATCTATTTCTTTTTTAAAA+TGG	-	chr8_1:89149164-89149183	None:intergenic	15.0%
!!!	ATATTGTTATTGTAGTTTTC+AGG	-	chr8_1:89147839-89147858	None:intergenic	20.0%
!!!	ACTACAATTTTCCATATTTA+AGG	+	chr8_1:89147909-89147928	Msa1224340:intron	20.0%
!!!	GTTGTTTTTATAAGTTATCT+TGG	+	chr8_1:89148027-89148046	Msa1224340:intron	20.0%
!!	GTTTGTAGAAATTTCATTTA+GGG	-	chr8_1:89148180-89148199	None:intergenic	20.0%
!!!	ATATTGTTATTGTAGTTTTC+AGG	-	chr8_1:89147839-89147858	None:intergenic	20.0%
!!!	ACTACAATTTTCCATATTTA+AGG	+	chr8_1:89147909-89147928	Msa1224340:intron	20.0%
!!!	GTTGTTTTTATAAGTTATCT+TGG	+	chr8_1:89148027-89148046	Msa1224340:intron	20.0%
!!	GTTTGTAGAAATTTCATTTA+GGG	-	chr8_1:89148180-89148199	None:intergenic	20.0%
!!	TGATATATTGACAGTTTGTT+TGG	+	chr8_1:89147514-89147533	Msa1224340:five_prime_UTR	25.0%
!!	GGTTTTGCATATAAATTTTC+AGG	+	chr8_1:89147559-89147578	Msa1224340:five_prime_UTR	25.0%
!!!	TAAATTTTCAGGATGAGAAA+AGG	+	chr8_1:89147570-89147589	Msa1224340:five_prime_UTR	25.0%
!!	ATAAACTTCAAAGGTTTTCA+TGG	-	chr8_1:89147755-89147774	None:intergenic	25.0%
!	GGTTTGTAGAAATTTCATTT+AGG	-	chr8_1:89148181-89148200	None:intergenic	25.0%
!!	AATTGATTTAGATGCTTACA+CGG	-	chr8_1:89148322-89148341	None:intergenic	25.0%
!!!	TCAATTTTCAACGTGTTATT+TGG	+	chr8_1:89148336-89148355	Msa1224340:intron	25.0%
!	TATTTGTCTGTTGAAACAAA+GGG	-	chr8_1:89148529-89148548	None:intergenic	25.0%
!	ATATTTGTCTGTTGAAACAA+AGG	-	chr8_1:89148530-89148549	None:intergenic	25.0%
!	AGCTAAAGATGAAGAAATTA+TGG	+	chr8_1:89148892-89148911	Msa1224340:intron	25.0%
!	ATGTCATCTATATAAAGTGT+CGG	-	chr8_1:89148960-89148979	None:intergenic	25.0%
!	ATGTAGTTCAGTATGTTATA+TGG	-	chr8_1:89149272-89149291	None:intergenic	25.0%
!	TAATAAGTTCAGATGATAAC+AGG	+	chr8_1:89149404-89149423	Msa1224340:CDS	25.0%
!!	TGATATATTGACAGTTTGTT+TGG	+	chr8_1:89147514-89147533	Msa1224340:five_prime_UTR	25.0%
!!	GGTTTTGCATATAAATTTTC+AGG	+	chr8_1:89147559-89147578	Msa1224340:five_prime_UTR	25.0%
!!!	TAAATTTTCAGGATGAGAAA+AGG	+	chr8_1:89147570-89147589	Msa1224340:five_prime_UTR	25.0%
!!	ATAAACTTCAAAGGTTTTCA+TGG	-	chr8_1:89147755-89147774	None:intergenic	25.0%
!	GGTTTGTAGAAATTTCATTT+AGG	-	chr8_1:89148181-89148200	None:intergenic	25.0%
!!	AATTGATTTAGATGCTTACA+CGG	-	chr8_1:89148322-89148341	None:intergenic	25.0%
!!!	TCAATTTTCAACGTGTTATT+TGG	+	chr8_1:89148336-89148355	Msa1224340:intron	25.0%
!	TATTTGTCTGTTGAAACAAA+GGG	-	chr8_1:89148529-89148548	None:intergenic	25.0%
!	ATATTTGTCTGTTGAAACAA+AGG	-	chr8_1:89148530-89148549	None:intergenic	25.0%
!	AGCTAAAGATGAAGAAATTA+TGG	+	chr8_1:89148892-89148911	Msa1224340:intron	25.0%
!	ATGTCATCTATATAAAGTGT+CGG	-	chr8_1:89148960-89148979	None:intergenic	25.0%
!	ATGTAGTTCAGTATGTTATA+TGG	-	chr8_1:89149272-89149291	None:intergenic	25.0%
!	TAATAAGTTCAGATGATAAC+AGG	+	chr8_1:89149404-89149423	Msa1224340:CDS	25.0%
	TTTGTTTGGTTGATCTTATG+TGG	+	chr8_1:89147528-89147547	Msa1224340:five_prime_UTR	30.0%
	TTCACCATTTGCAATTCTAT+TGG	-	chr8_1:89147633-89147652	None:intergenic	30.0%
	CAGGATCATATAAACTTCAA+AGG	-	chr8_1:89147764-89147783	None:intergenic	30.0%
!	AGGGTAAGTTTAAGTTTAAG+AGG	+	chr8_1:89147875-89147894	Msa1224340:intron	30.0%
!	GGGTAAGTTTAAGTTTAAGA+GGG	+	chr8_1:89147876-89147895	Msa1224340:intron	30.0%
	TTGATTGGACTCCTTAAATA+TGG	-	chr8_1:89147923-89147942	None:intergenic	30.0%
	TATTATAAGCGCATTAGTGT+TGG	-	chr8_1:89147956-89147975	None:intergenic	30.0%
	CTACATTTGCAAAGACATAA+TGG	-	chr8_1:89148202-89148221	None:intergenic	30.0%
!!	TGTTATTTGGTGTTTACTTC+AGG	+	chr8_1:89148349-89148368	Msa1224340:intron	30.0%
	AAAAGTGAGACTAAAAACAC+TGG	+	chr8_1:89148379-89148398	Msa1224340:CDS	30.0%
	TAAAAAACAACACACACTGT+TGG	+	chr8_1:89148549-89148568	Msa1224340:intron	30.0%
	CAGAAAACATGTTGAAGAAA+AGG	+	chr8_1:89148619-89148638	Msa1224340:intron	30.0%
	TGAAAAGGAAAATGAGATAC+AGG	+	chr8_1:89148667-89148686	Msa1224340:CDS	30.0%
!!!	TGTCAGGTTTTTTGTATGAT+AGG	+	chr8_1:89148810-89148829	Msa1224340:CDS	30.0%
	AAAGAGAGGTCATTAAATTG+AGG	+	chr8_1:89148837-89148856	Msa1224340:intron	30.0%
	TAAATTATTACCGGTGTCTT+CGG	+	chr8_1:89149065-89149084	Msa1224340:intron	30.0%
	TTTGTTTGGTTGATCTTATG+TGG	+	chr8_1:89147528-89147547	Msa1224340:five_prime_UTR	30.0%
	TTCACCATTTGCAATTCTAT+TGG	-	chr8_1:89147633-89147652	None:intergenic	30.0%
	CAGGATCATATAAACTTCAA+AGG	-	chr8_1:89147764-89147783	None:intergenic	30.0%
!	AGGGTAAGTTTAAGTTTAAG+AGG	+	chr8_1:89147875-89147894	Msa1224340:intron	30.0%
!	GGGTAAGTTTAAGTTTAAGA+GGG	+	chr8_1:89147876-89147895	Msa1224340:intron	30.0%
	TTGATTGGACTCCTTAAATA+TGG	-	chr8_1:89147923-89147942	None:intergenic	30.0%
	TATTATAAGCGCATTAGTGT+TGG	-	chr8_1:89147956-89147975	None:intergenic	30.0%
	CTACATTTGCAAAGACATAA+TGG	-	chr8_1:89148202-89148221	None:intergenic	30.0%
!!	TGTTATTTGGTGTTTACTTC+AGG	+	chr8_1:89148349-89148368	Msa1224340:intron	30.0%
	AAAAGTGAGACTAAAAACAC+TGG	+	chr8_1:89148379-89148398	Msa1224340:CDS	30.0%
	TAAAAAACAACACACACTGT+TGG	+	chr8_1:89148549-89148568	Msa1224340:intron	30.0%
	CAGAAAACATGTTGAAGAAA+AGG	+	chr8_1:89148619-89148638	Msa1224340:intron	30.0%
	TGAAAAGGAAAATGAGATAC+AGG	+	chr8_1:89148667-89148686	Msa1224340:CDS	30.0%
!!!	TGTCAGGTTTTTTGTATGAT+AGG	+	chr8_1:89148810-89148829	Msa1224340:CDS	30.0%
	AAAGAGAGGTCATTAAATTG+AGG	+	chr8_1:89148837-89148856	Msa1224340:intron	30.0%
	TAAATTATTACCGGTGTCTT+CGG	+	chr8_1:89149065-89149084	Msa1224340:intron	30.0%
	TGATCTTATGTGGTAACTTG+TGG	+	chr8_1:89147538-89147557	Msa1224340:five_prime_UTR	35.0%
!	AGTATTTAAGGCATGAAAGC+AGG	-	chr8_1:89147783-89147802	None:intergenic	35.0%
	AAATGTAGACAGAGATGCAA+AGG	+	chr8_1:89148214-89148233	Msa1224340:intron	35.0%
	ATAAGTTCCCCAACAGAAAA+TGG	+	chr8_1:89148452-89148471	Msa1224340:CDS	35.0%
!!!	TGTGATGTGGATCTCTTTTT+TGG	-	chr8_1:89148482-89148501	None:intergenic	35.0%
	AAAGGAAAATGAGATACAGG+TGG	+	chr8_1:89148670-89148689	Msa1224340:CDS	35.0%
!	AGTCATTTGGTTTCTTGCTT+TGG	-	chr8_1:89148772-89148791	None:intergenic	35.0%
	AGCTTGCAAATTACTGTCTT+TGG	-	chr8_1:89148876-89148895	None:intergenic	35.0%
	ATACATAGCTAGTGAAAGTC+GGG	-	chr8_1:89148935-89148954	None:intergenic	35.0%
	GATACATAGCTAGTGAAAGT+CGG	-	chr8_1:89148936-89148955	None:intergenic	35.0%
	ATTGAATGTAACCATGTGTC+AGG	-	chr8_1:89149031-89149050	None:intergenic	35.0%
	AAATTATTACCGGTGTCTTC+GGG	+	chr8_1:89149066-89149085	Msa1224340:intron	35.0%
	ATGTTTCACAGTCTACAAGT+AGG	+	chr8_1:89149132-89149151	Msa1224340:intron	35.0%
	TGAGTTCGTTACTGTAGTTT+AGG	+	chr8_1:89149182-89149201	Msa1224340:intron	35.0%
	GTTCAGTATGTTATATGGAG+AGG	-	chr8_1:89149267-89149286	None:intergenic	35.0%
	TGATCTTATGTGGTAACTTG+TGG	+	chr8_1:89147538-89147557	Msa1224340:five_prime_UTR	35.0%
!	AGTATTTAAGGCATGAAAGC+AGG	-	chr8_1:89147783-89147802	None:intergenic	35.0%
	AAATGTAGACAGAGATGCAA+AGG	+	chr8_1:89148214-89148233	Msa1224340:intron	35.0%
	ATAAGTTCCCCAACAGAAAA+TGG	+	chr8_1:89148452-89148471	Msa1224340:CDS	35.0%
!!!	TGTGATGTGGATCTCTTTTT+TGG	-	chr8_1:89148482-89148501	None:intergenic	35.0%
	AAAGGAAAATGAGATACAGG+TGG	+	chr8_1:89148670-89148689	Msa1224340:CDS	35.0%
!	AGTCATTTGGTTTCTTGCTT+TGG	-	chr8_1:89148772-89148791	None:intergenic	35.0%
	AGCTTGCAAATTACTGTCTT+TGG	-	chr8_1:89148876-89148895	None:intergenic	35.0%
	ATACATAGCTAGTGAAAGTC+GGG	-	chr8_1:89148935-89148954	None:intergenic	35.0%
	GATACATAGCTAGTGAAAGT+CGG	-	chr8_1:89148936-89148955	None:intergenic	35.0%
	ATTGAATGTAACCATGTGTC+AGG	-	chr8_1:89149031-89149050	None:intergenic	35.0%
	AAATTATTACCGGTGTCTTC+GGG	+	chr8_1:89149066-89149085	Msa1224340:intron	35.0%
	ATGTTTCACAGTCTACAAGT+AGG	+	chr8_1:89149132-89149151	Msa1224340:intron	35.0%
	TGAGTTCGTTACTGTAGTTT+AGG	+	chr8_1:89149182-89149201	Msa1224340:intron	35.0%
	GTTCAGTATGTTATATGGAG+AGG	-	chr8_1:89149267-89149286	None:intergenic	35.0%
	ATGAGAAAAGGACACTAGAG+AGG	+	chr8_1:89147582-89147601	Msa1224340:five_prime_UTR	40.0%
	TGAGAAAAGGACACTAGAGA+GGG	+	chr8_1:89147583-89147602	Msa1224340:five_prime_UTR	40.0%
	GCTAGCAAGGGTAAAAGTTT+CGG	+	chr8_1:89147607-89147626	Msa1224340:five_prime_UTR	40.0%
	TCGGCCAATAGAATTGCAAA+TGG	+	chr8_1:89147626-89147645	Msa1224340:five_prime_UTR	40.0%
	CAAATGGTGAAGCTAATGAG+TGG	+	chr8_1:89147642-89147661	Msa1224340:five_prime_UTR	40.0%
	GTGGAAGGATGAAAATGACA+AGG	+	chr8_1:89147661-89147680	Msa1224340:five_prime_UTR	40.0%
	AGAAGAGAGAAGGATTATGC+AGG	+	chr8_1:89147706-89147725	Msa1224340:CDS	40.0%
	TTAAGGAGTCCAATCAAGAG+AGG	+	chr8_1:89147926-89147945	Msa1224340:intron	40.0%
	TATATCAGAGAGAACAGCCA+AGG	+	chr8_1:89148254-89148273	Msa1224340:intron	40.0%
	AGTGAGACTAAAAACACTGG+AGG	+	chr8_1:89148382-89148401	Msa1224340:CDS	40.0%
	AGACTAAAAACACTGGAGGA+AGG	+	chr8_1:89148386-89148405	Msa1224340:CDS	40.0%
!	TTGGACCACCATTTTCTGTT+GGG	-	chr8_1:89148463-89148482	None:intergenic	40.0%
!	TTTGGACCACCATTTTCTGT+TGG	-	chr8_1:89148464-89148483	None:intergenic	40.0%
	AAAACAACACACACTGTTGG+AGG	+	chr8_1:89148552-89148571	Msa1224340:intron	40.0%
	AAACAACACACACTGTTGGA+GGG	+	chr8_1:89148553-89148572	Msa1224340:intron	40.0%
	TGTTGGAGGGAATTCAAAAC+AGG	+	chr8_1:89148566-89148585	Msa1224340:intron	40.0%
	CCACTATCAGCAACTTTACT+TGG	-	chr8_1:89148647-89148666	None:intergenic	40.0%
	CCAAGTAAAGTTGCTGATAG+TGG	+	chr8_1:89148644-89148663	Msa1224340:CDS	40.0%
!!	AGTTGCTGATAGTGGTGAAA+AGG	+	chr8_1:89148652-89148671	Msa1224340:CDS	40.0%
!	CTTCACTTTCAGCATTGAAC+TGG	-	chr8_1:89148715-89148734	None:intergenic	40.0%
	ACACGTGTCAAACATTGACA+CGG	-	chr8_1:89148986-89149005	None:intergenic	40.0%
	GTCAGTATCAGAAACCAACA+CGG	+	chr8_1:89149004-89149023	Msa1224340:intron	40.0%
!	GGGTTAGTGTCAATGTTGTT+TGG	+	chr8_1:89149086-89149105	Msa1224340:intron	40.0%
	GAAACAAAGACTCCTCCAAA+AGG	+	chr8_1:89149434-89149453	Msa1224340:CDS	40.0%
!	TATCAGCCACACTAACCTTT+TGG	-	chr8_1:89149452-89149471	None:intergenic	40.0%
	ATGAGAAAAGGACACTAGAG+AGG	+	chr8_1:89147582-89147601	Msa1224340:five_prime_UTR	40.0%
	TGAGAAAAGGACACTAGAGA+GGG	+	chr8_1:89147583-89147602	Msa1224340:five_prime_UTR	40.0%
	GCTAGCAAGGGTAAAAGTTT+CGG	+	chr8_1:89147607-89147626	Msa1224340:five_prime_UTR	40.0%
	TCGGCCAATAGAATTGCAAA+TGG	+	chr8_1:89147626-89147645	Msa1224340:five_prime_UTR	40.0%
	CAAATGGTGAAGCTAATGAG+TGG	+	chr8_1:89147642-89147661	Msa1224340:five_prime_UTR	40.0%
	GTGGAAGGATGAAAATGACA+AGG	+	chr8_1:89147661-89147680	Msa1224340:five_prime_UTR	40.0%
	AGAAGAGAGAAGGATTATGC+AGG	+	chr8_1:89147706-89147725	Msa1224340:CDS	40.0%
	TTAAGGAGTCCAATCAAGAG+AGG	+	chr8_1:89147926-89147945	Msa1224340:intron	40.0%
	TATATCAGAGAGAACAGCCA+AGG	+	chr8_1:89148254-89148273	Msa1224340:intron	40.0%
	AGTGAGACTAAAAACACTGG+AGG	+	chr8_1:89148382-89148401	Msa1224340:CDS	40.0%
	AGACTAAAAACACTGGAGGA+AGG	+	chr8_1:89148386-89148405	Msa1224340:CDS	40.0%
!	TTGGACCACCATTTTCTGTT+GGG	-	chr8_1:89148463-89148482	None:intergenic	40.0%
!	TTTGGACCACCATTTTCTGT+TGG	-	chr8_1:89148464-89148483	None:intergenic	40.0%
	AAAACAACACACACTGTTGG+AGG	+	chr8_1:89148552-89148571	Msa1224340:intron	40.0%
	AAACAACACACACTGTTGGA+GGG	+	chr8_1:89148553-89148572	Msa1224340:intron	40.0%
	TGTTGGAGGGAATTCAAAAC+AGG	+	chr8_1:89148566-89148585	Msa1224340:intron	40.0%
	CCACTATCAGCAACTTTACT+TGG	-	chr8_1:89148647-89148666	None:intergenic	40.0%
	CCAAGTAAAGTTGCTGATAG+TGG	+	chr8_1:89148644-89148663	Msa1224340:CDS	40.0%
!!	AGTTGCTGATAGTGGTGAAA+AGG	+	chr8_1:89148652-89148671	Msa1224340:CDS	40.0%
!	CTTCACTTTCAGCATTGAAC+TGG	-	chr8_1:89148715-89148734	None:intergenic	40.0%
	ACACGTGTCAAACATTGACA+CGG	-	chr8_1:89148986-89149005	None:intergenic	40.0%
	GTCAGTATCAGAAACCAACA+CGG	+	chr8_1:89149004-89149023	Msa1224340:intron	40.0%
!	GGGTTAGTGTCAATGTTGTT+TGG	+	chr8_1:89149086-89149105	Msa1224340:intron	40.0%
	GAAACAAAGACTCCTCCAAA+AGG	+	chr8_1:89149434-89149453	Msa1224340:CDS	40.0%
!	TATCAGCCACACTAACCTTT+TGG	-	chr8_1:89149452-89149471	None:intergenic	40.0%
	TGGTGAAGCTAATGAGTGGA+AGG	+	chr8_1:89147646-89147665	Msa1224340:five_prime_UTR	45.0%
	TCTTCTAGCCATTGCTTGAC+AGG	-	chr8_1:89147692-89147711	None:intergenic	45.0%
	AGCAATGGCTAGAAGAGAGA+AGG	+	chr8_1:89147696-89147715	Msa1224340:CDS	45.0%
	CTTCATCTGTGATTCTGCCT+TGG	-	chr8_1:89148274-89148293	None:intergenic	45.0%
	CAAGGCAGAATCACAGATGA+AGG	+	chr8_1:89148272-89148291	Msa1224340:intron	45.0%
	AGTTCCCCAACAGAAAATGG+TGG	+	chr8_1:89148455-89148474	Msa1224340:CDS	45.0%
!	TGGACCACCATTTTCTGTTG+GGG	-	chr8_1:89148462-89148481	None:intergenic	45.0%
	AGAAGCTCTTGGTTGTGATG+TGG	-	chr8_1:89148495-89148514	None:intergenic	45.0%
	GTATGATAGGCTGCAAAGAG+AGG	+	chr8_1:89148823-89148842	Msa1224340:CDS	45.0%
	CACGTGTCAAACATTGACAC+GGG	-	chr8_1:89148985-89149004	None:intergenic	45.0%
	TTTCTTCCGCTCTACTTCCA+TGG	-	chr8_1:89149341-89149360	None:intergenic	45.0%
	AGATGCAGCTGCTAGAGAAA+AGG	+	chr8_1:89149369-89149388	Msa1224340:CDS	45.0%
	ACTCCTCCAAAAGGTTAGTG+TGG	+	chr8_1:89149443-89149462	Msa1224340:CDS	45.0%
	TGGTGAAGCTAATGAGTGGA+AGG	+	chr8_1:89147646-89147665	Msa1224340:five_prime_UTR	45.0%
	TCTTCTAGCCATTGCTTGAC+AGG	-	chr8_1:89147692-89147711	None:intergenic	45.0%
	AGCAATGGCTAGAAGAGAGA+AGG	+	chr8_1:89147696-89147715	Msa1224340:CDS	45.0%
	CTTCATCTGTGATTCTGCCT+TGG	-	chr8_1:89148274-89148293	None:intergenic	45.0%
	CAAGGCAGAATCACAGATGA+AGG	+	chr8_1:89148272-89148291	Msa1224340:intron	45.0%
	AGTTCCCCAACAGAAAATGG+TGG	+	chr8_1:89148455-89148474	Msa1224340:CDS	45.0%
!	TGGACCACCATTTTCTGTTG+GGG	-	chr8_1:89148462-89148481	None:intergenic	45.0%
	AGAAGCTCTTGGTTGTGATG+TGG	-	chr8_1:89148495-89148514	None:intergenic	45.0%
	GTATGATAGGCTGCAAAGAG+AGG	+	chr8_1:89148823-89148842	Msa1224340:CDS	45.0%
	CACGTGTCAAACATTGACAC+GGG	-	chr8_1:89148985-89149004	None:intergenic	45.0%
	TTTCTTCCGCTCTACTTCCA+TGG	-	chr8_1:89149341-89149360	None:intergenic	45.0%
	AGATGCAGCTGCTAGAGAAA+AGG	+	chr8_1:89149369-89149388	Msa1224340:CDS	45.0%
	ACTCCTCCAAAAGGTTAGTG+TGG	+	chr8_1:89149443-89149462	Msa1224340:CDS	45.0%
	ACTAGAGAGGGAGCTAGCAA+GGG	+	chr8_1:89147595-89147614	Msa1224340:five_prime_UTR	50.0%
	AGGTCATGCCTGTCAAGCAA+TGG	+	chr8_1:89147681-89147700	Msa1224340:exon	50.0%
	GTTGGACAGCCTCTCTTGAT+TGG	-	chr8_1:89147938-89147957	None:intergenic	50.0%
	CAACCAAGAGCTTCTGCGAT+TGG	+	chr8_1:89148500-89148519	Msa1224340:CDS	50.0%
	CTTCCAATCGCAGAAGCTCT+TGG	-	chr8_1:89148506-89148525	None:intergenic	50.0%
	TCGTCACTGCACGAGTCATT+TGG	-	chr8_1:89148785-89148804	None:intergenic	50.0%
	TGACTCGTGCAGTGACGATT+TGG	+	chr8_1:89148787-89148806	Msa1224340:CDS	50.0%
!!	TGCAGTGACGATTTGGTGTC+AGG	+	chr8_1:89148794-89148813	Msa1224340:CDS	50.0%
	TGACACTAACCCGAAGACAC+CGG	-	chr8_1:89149078-89149097	None:intergenic	50.0%
!	TGATGCACTGACCAAGTCCA+TGG	+	chr8_1:89149321-89149340	Msa1224340:CDS	50.0%
	CCAAGTCCATGGAAGTAGAG+CGG	+	chr8_1:89149332-89149351	Msa1224340:CDS	50.0%
	TGCAGCTGCTAGAGAAAAGG+AGG	+	chr8_1:89149372-89149391	Msa1224340:CDS	50.0%
!	CAGCCACACTAACCTTTTGG+AGG	-	chr8_1:89149449-89149468	None:intergenic	50.0%
	ACTAGAGAGGGAGCTAGCAA+GGG	+	chr8_1:89147595-89147614	Msa1224340:five_prime_UTR	50.0%
	AGGTCATGCCTGTCAAGCAA+TGG	+	chr8_1:89147681-89147700	Msa1224340:exon	50.0%
	GTTGGACAGCCTCTCTTGAT+TGG	-	chr8_1:89147938-89147957	None:intergenic	50.0%
	CAACCAAGAGCTTCTGCGAT+TGG	+	chr8_1:89148500-89148519	Msa1224340:CDS	50.0%
	CTTCCAATCGCAGAAGCTCT+TGG	-	chr8_1:89148506-89148525	None:intergenic	50.0%
	TCGTCACTGCACGAGTCATT+TGG	-	chr8_1:89148785-89148804	None:intergenic	50.0%
	TGACTCGTGCAGTGACGATT+TGG	+	chr8_1:89148787-89148806	Msa1224340:CDS	50.0%
!!	TGCAGTGACGATTTGGTGTC+AGG	+	chr8_1:89148794-89148813	Msa1224340:CDS	50.0%
	TGACACTAACCCGAAGACAC+CGG	-	chr8_1:89149078-89149097	None:intergenic	50.0%
!	TGATGCACTGACCAAGTCCA+TGG	+	chr8_1:89149321-89149340	Msa1224340:CDS	50.0%
	CCAAGTCCATGGAAGTAGAG+CGG	+	chr8_1:89149332-89149351	Msa1224340:CDS	50.0%
	TGCAGCTGCTAGAGAAAAGG+AGG	+	chr8_1:89149372-89149391	Msa1224340:CDS	50.0%
!	CAGCCACACTAACCTTTTGG+AGG	-	chr8_1:89149449-89149468	None:intergenic	50.0%
	CACTAGAGAGGGAGCTAGCA+AGG	+	chr8_1:89147594-89147613	Msa1224340:five_prime_UTR	55.0%
	ACCAACACGGTCCTGACACA+TGG	+	chr8_1:89149017-89149036	Msa1224340:intron	55.0%
	ACCATGTGTCAGGACCGTGT+TGG	-	chr8_1:89149021-89149040	None:intergenic	55.0%
	CCGCTCTACTTCCATGGACT+TGG	-	chr8_1:89149335-89149354	None:intergenic	55.0%
	CACTAGAGAGGGAGCTAGCA+AGG	+	chr8_1:89147594-89147613	Msa1224340:five_prime_UTR	55.0%
	ACCAACACGGTCCTGACACA+TGG	+	chr8_1:89149017-89149036	Msa1224340:intron	55.0%
	ACCATGTGTCAGGACCGTGT+TGG	-	chr8_1:89149021-89149040	None:intergenic	55.0%
	CCGCTCTACTTCCATGGACT+TGG	-	chr8_1:89149335-89149354	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	89147469	89149513	89147469	ID=Msa1224340;Name=Msa1224340
chr8_1	mRNA	89147469	89149513	89147469	ID=Msa1224340-mRNA-1;Parent=Msa1224340;Name=Msa1224340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=217\|0\|0.25\|1\|1\|1\|4\|0\|207
chr8_1	exon	89147469	89147727	89147469	ID=Msa1224340-mRNA-1:exon:32377;Parent=Msa1224340-mRNA-1
chr8_1	exon	89148371	89148531	89148371	ID=Msa1224340-mRNA-1:exon:32378;Parent=Msa1224340-mRNA-1
chr8_1	exon	89148622	89148844	89148622	ID=Msa1224340-mRNA-1:exon:32379;Parent=Msa1224340-mRNA-1
chr8_1	exon	89149316	89149513	89149316	ID=Msa1224340-mRNA-1:exon:32380;Parent=Msa1224340-mRNA-1
chr8_1	five_prime_UTR	89147469	89147685	89147469	ID=Msa1224340-mRNA-1:five_prime_utr;Parent=Msa1224340-mRNA-1
chr8_1	CDS	89147686	89147727	89147686	ID=Msa1224340-mRNA-1:cds;Parent=Msa1224340-mRNA-1
chr8_1	CDS	89148371	89148531	89148371	ID=Msa1224340-mRNA-1:cds;Parent=Msa1224340-mRNA-1
chr8_1	CDS	89148622	89148844	89148622	ID=Msa1224340-mRNA-1:cds;Parent=Msa1224340-mRNA-1
chr8_1	CDS	89149316	89149513	89149316	ID=Msa1224340-mRNA-1:cds;Parent=Msa1224340-mRNA-1

Gene Sequence

>Msa1224340

ATGCCTGTCAAGCAATGGCTAGAAGAGAGAAGGATTATGCAGGAAAAGCTAAAAGTGAGACTAAAAACACTGGAGGAAGGTTTAAAACATTCTTCAAGTTCAAAAGCAGAAAAGTCTAACATCATAAGTTCCCCAACAGAAAATGGTGGTCCAAAAAAGAGATCCACATCACAACCAAGAGCTTCTGCGATTGGAAGCCCTTTAAAACATGTTGAAGAAAAGGATCCAAGTAAAGTTGCTGATAGTGGTGAAAAGGAAAATGAGATACAGGTGGACACAGACATGAATTTAAACCAGTTCAATGCTGAAAGTGAAGAAATCAAAACAATTGTTGATGTGAATGAAGACTTCCAAAGCAAGAAACCAAATGACTCGTGCAGTGACGATTTGGTGTCAGGTTTTTTGTATGATAGGCTGCAAAGAGAGAAAGTTGATGCACTGACCAAGTCCATGGAAGTAGAGCGGAAGAAAATGAAAAGAGATGCAGCTGCTAGAGAAAAGGAGGTTTCAGCAATAATAAGTTCAGATGATAACAGGAAAAACAGAAACAAAGACTCCTCCAAAAGGTTAGTGTGGCTGATACATGCTAACAAGTTTGTTCTGTTTGTCTTAACTATAGCCTAA

Protein sequence

>Msa1224340

MPVKQWLEERRIMQEKLKVRLKTLEEGLKHSSSSKAEKSNIISSPTENGGPKKRSTSQPRASAIGSPLKHVEEKDPSKVADSGEKENEIQVDTDMNLNQFNAESEEIKTIVDVNEDFQSKKPNDSCSDDLVSGFLYDRLQREKVDALTKSMEVERKKMKRDAAAREKEVSAIISSDDNRKNRNKDSSKRLVWLIHANKFVLFVLTIA*