AlfalfaGEDB | Msa0972630

M. sativa cultivar zhongmu-4 / Msa0972630

KEGG: K03347
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972630	XP_003594970.1	95.122	41	2	0	12	52	94	134	8.16e-17	85.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972630	sp\|Q40784\|AAPC_CENCI	63.415	41	15	0	12	52	106	146	6.23e-11	61.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972630	G7IN18	95.122	41	2	0	12	52	94	134	3.90e-17	85.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007440	Msa0972630	0.814285	1.665114e-51	-8.615850e-47
Msa0011170	Msa0972630	0.822607	2.163795e-53	-8.615850e-47
Msa0014710	Msa0972630	0.811499	6.791144e-51	-8.615850e-47
Msa0015610	Msa0972630	0.832799	7.690800e-56	-8.615850e-47
Msa0020930	Msa0972630	0.814041	1.884960e-51	-8.615850e-47
Msa0031340	Msa0972630	0.816323	5.866492e-52	-8.615850e-47
Msa0031710	Msa0972630	0.813646	2.303143e-51	-8.615850e-47
Msa0032110	Msa0972630	0.802001	6.899370e-49	-8.615850e-47
Msa0036140	Msa0972630	0.813946	1.978423e-51	-8.615850e-47
Msa0043980	Msa0972630	0.824131	9.529617e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972630	MtrunA17_Chr2g0298101	95.122	41	2	0	12	52	94	134	7.51e-21	85.5
Msa0972630	MtrunA17_Chr4g0067071	66.667	60	17	1	64	123	155	211	6.89e-16	70.5
Msa0972630	MtrunA17_Chr4g0067051	59.322	59	21	1	64	122	155	210	7.95e-13	62.4
Msa0972630	MtrunA17_Chr4g0067381	62.745	51	19	0	64	114	156	206	1.97e-12	61.2
Msa0972630	MtrunA17_Chr4g0067031	60.000	50	20	0	64	113	159	208	8.22e-12	60.8
Msa0972630	MtrunA17_Chr5g0396951	56.098	41	18	0	12	52	97	137	7.40e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972630	AT5G57330.1	56.098	41	18	0	12	52	90	130	6.79e-11	58.2

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Find 43 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTATCCCTATACAAGATT+TGG	0.236483	6_4:+4945752	None:intergenic
AAGAGTGCATGGCAAGACCT+TGG	0.567658	6_4:+4945809	None:intergenic
AAGATTTGGGGAAGAAAGGA+AGG	0.506654	6_4:+4945766	None:intergenic
AAGCATAGTTACTGACATAG+AGG	0.545162	6_4:+4945708	None:intergenic
ACTATCCCTATACAAGATTT+GGG	0.340396	6_4:+4945753	None:intergenic
AGAGCTTGTTGATGAAACAC+AGG	0.624120	6_4:-4946016	Msa0972630:CDS
AGGAGAAGGGTCGTCTTCAA+TGG	0.498177	6_4:+4948480	None:intergenic
AGTATGTCAAGGCTTCAAAT+TGG	0.456191	6_4:-4945880	Msa0972630:CDS
AGTTCTTACCTTTGAAATAA+AGG	0.266059	6_4:+4948263	None:intergenic
ATACAAGATTTGGGGAAGAA+AGG	0.497353	6_4:+4945762	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAATTGGGCTTTCAAAT+GGG	-	chr6_4:4945551-4945570	Msa0972630:three_prime_UTR	30.0%
GCTTTGCTCAAATTATTTGT+TGG	+	chr6_4:4945693-4945712	None:intergenic	30.0%
ATCTTCATATCTTCTTCAGA+GGG	+	chr6_4:4945738-4945757	None:intergenic	30.0%
AAAAAATGCAGCAAATTTGC+AGG	-	chr6_4:4946002-4946021	Msa0972630:CDS	30.0%
AACAGGTATTATGTGTATGA+TGG	+	chr6_4:4946125-4946144	None:intergenic	30.0%
CTATAAACTATTTCCTGTAG+TGG	+	chr6_4:4946414-4946433	None:intergenic	30.0%
AACAATATCTATTTGGCTAC+TGG	+	chr6_4:4946514-4946533	None:intergenic	30.0%
ATATAACGACTTGTGATTGT+AGG	+	chr6_4:4946546-4946565	None:intergenic	30.0%
GAGGGAATTCATAATGAATT+AGG	+	chr6_4:4946813-4946832	None:intergenic	30.0%
CTAAGTACACCAATGAATAA+CGG	+	chr6_4:4946868-4946887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	4945419	4948747	4945419	ID=Msa0972630;Name=Msa0972630
chr6_4	mRNA	4945419	4948747	4945419	ID=Msa0972630-mRNA-1;Parent=Msa0972630;Name=Msa0972630-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0.16\|1\|0\|0\|6\|457\|123
chr6_4	exon	4945419	4946058	4945419	ID=Msa0972630-mRNA-1:exon:2142;Parent=Msa0972630-mRNA-1
chr6_4	exon	4947806	4947813	4947806	ID=Msa0972630-mRNA-1:exon:2141;Parent=Msa0972630-mRNA-1
chr6_4	exon	4948272	4948300	4948272	ID=Msa0972630-mRNA-1:exon:2140;Parent=Msa0972630-mRNA-1
chr6_4	exon	4948397	4948516	4948397	ID=Msa0972630-mRNA-1:exon:2139;Parent=Msa0972630-mRNA-1
chr6_4	exon	4948626	4948653	4948626	ID=Msa0972630-mRNA-1:exon:2138;Parent=Msa0972630-mRNA-1
chr6_4	exon	4948744	4948747	4948744	ID=Msa0972630-mRNA-1:exon:2137;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4948744	4948747	4948744	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4948626	4948653	4948626	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4948397	4948516	4948397	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4948272	4948300	4948272	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4947806	4947813	4947806	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	CDS	4945876	4946058	4945876	ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1
chr6_4	three_prime_UTR	4945419	4945875	4945419	ID=Msa0972630-mRNA-1:three_prime_utr;Parent=Msa0972630-mRNA-1

Gene Sequence	>Msa0972630 ATGGGGTTTGGATTGAGATTTGCTTGTTGGGGAAATCGGGTTTGGGCCATTGAAGACGACCCTTCTCCTTTTCCAACAAATAATTTGAGCAAAGCCTTTGTTGATTTGATTCTTAAACCCTCTGAAGAAGATATGAAGATCTGGAATATCAGTTTTGGAACATTTTTCCTTTATTTCAAAGTTTTCAAGATTAATCGGAAACATGCAGGAGAGCTTGTTGATGAAACACAGGTGAACATTGCATTGAATTTCTACTATGAGATTGTAGAAAGTACAAAAAAATACGATCCGATACACTTTGCAGAAACAATGATTAAGGAGAATGAAACATTCAATTTTATGTCGAGTATGTCAAGGCTTCAAATTGGATAG
Protein sequence	>Msa0972630 MGFGLRFACWGNRVWAIEDDPSPFPTNNLSKAFVDLILKPSEEDMKIWNISFGTFFLYFKVFKINRKHAGELVDETQVNIALNFYYEIVESTKKYDPIHFAETMIKENETFNFMSSMSRLQIG*