Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972630 | XP_003594970.1 | 95.122 | 41 | 2 | 0 | 12 | 52 | 94 | 134 | 8.16e-17 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972630 | sp|Q40784|AAPC_CENCI | 63.415 | 41 | 15 | 0 | 12 | 52 | 106 | 146 | 6.23e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972630 | G7IN18 | 95.122 | 41 | 2 | 0 | 12 | 52 | 94 | 134 | 3.90e-17 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0972630 | 0.814285 | 1.665114e-51 | -8.615850e-47 |
| Msa0011170 | Msa0972630 | 0.822607 | 2.163795e-53 | -8.615850e-47 |
| Msa0014710 | Msa0972630 | 0.811499 | 6.791144e-51 | -8.615850e-47 |
| Msa0015610 | Msa0972630 | 0.832799 | 7.690800e-56 | -8.615850e-47 |
| Msa0020930 | Msa0972630 | 0.814041 | 1.884960e-51 | -8.615850e-47 |
| Msa0031340 | Msa0972630 | 0.816323 | 5.866492e-52 | -8.615850e-47 |
| Msa0031710 | Msa0972630 | 0.813646 | 2.303143e-51 | -8.615850e-47 |
| Msa0032110 | Msa0972630 | 0.802001 | 6.899370e-49 | -8.615850e-47 |
| Msa0036140 | Msa0972630 | 0.813946 | 1.978423e-51 | -8.615850e-47 |
| Msa0043980 | Msa0972630 | 0.824131 | 9.529617e-54 | -8.615850e-47 |
| Msa0045790 | Msa0972630 | 0.807297 | 5.414695e-50 | -8.615850e-47 |
| Msa0046160 | Msa0972630 | 0.807799 | 4.236910e-50 | -8.615850e-47 |
| Msa0074700 | Msa0972630 | 0.812345 | 4.442266e-51 | -8.615850e-47 |
| Msa0083280 | Msa0972630 | 0.834884 | 2.314804e-56 | -8.615850e-47 |
| Msa0084080 | Msa0972630 | 0.801246 | 9.854913e-49 | -8.615850e-47 |
| Msa0090360 | Msa0972630 | 0.800498 | 1.401150e-48 | -8.615850e-47 |
| Msa0095560 | Msa0972630 | 0.810953 | 8.921508e-51 | -8.615850e-47 |
| Msa0114060 | Msa0972630 | 0.814475 | 1.512144e-51 | -8.615850e-47 |
| Msa0114430 | Msa0972630 | 0.805739 | 1.154040e-49 | -8.615850e-47 |
| Msa0608160 | Msa0972630 | 0.821852 | 3.239230e-53 | -8.615850e-47 |
| Msa0617640 | Msa0972630 | 0.805287 | 1.436037e-49 | -8.615850e-47 |
| Msa0625720 | Msa0972630 | 0.800816 | 1.206966e-48 | -8.615850e-47 |
| Msa0648080 | Msa0972630 | 0.826698 | 2.351198e-54 | -8.615850e-47 |
| Msa0649350 | Msa0972630 | 0.802522 | 5.390043e-49 | -8.615850e-47 |
| Msa0652940 | Msa0972630 | 0.818896 | 1.543071e-52 | -8.615850e-47 |
| Msa0654310 | Msa0972630 | 0.815528 | 8.828075e-52 | -8.615850e-47 |
| Msa0663240 | Msa0972630 | 0.806032 | 1.001829e-49 | -8.615850e-47 |
| Msa0663390 | Msa0972630 | 0.810002 | 1.431130e-50 | -8.615850e-47 |
| Msa0667050 | Msa0972630 | 0.804079 | 2.566358e-49 | -8.615850e-47 |
| Msa0672690 | Msa0972630 | 0.826501 | 2.620842e-54 | -8.615850e-47 |
| Msa0681270 | Msa0972630 | 0.809998 | 1.433838e-50 | -8.615850e-47 |
| Msa0688070 | Msa0972630 | 0.803155 | 3.989762e-49 | -8.615850e-47 |
| Msa0688480 | Msa0972630 | 0.819579 | 1.078710e-52 | -8.615850e-47 |
| Msa0691380 | Msa0972630 | 0.808874 | 2.499413e-50 | -8.615850e-47 |
| Msa0701900 | Msa0972630 | 0.815514 | 8.891543e-52 | -8.615850e-47 |
| Msa0707250 | Msa0972630 | 0.816106 | 6.561927e-52 | -8.615850e-47 |
| Msa0716530 | Msa0972630 | 0.805723 | 1.163295e-49 | -8.615850e-47 |
| Msa0740510 | Msa0972630 | 0.817760 | 2.789382e-52 | -8.615850e-47 |
| Msa0745790 | Msa0972630 | 0.812754 | 3.616328e-51 | -8.615850e-47 |
| Msa0750170 | Msa0972630 | 0.800898 | 1.160995e-48 | -8.615850e-47 |
| Msa0760130 | Msa0972630 | 0.811671 | 6.230260e-51 | -8.615850e-47 |
| Msa0790510 | Msa0972630 | 0.813120 | 3.005799e-51 | -8.615850e-47 |
| Msa0792540 | Msa0972630 | 0.824205 | 9.157294e-54 | -8.615850e-47 |
| Msa0794730 | Msa0972630 | 0.812101 | 5.021552e-51 | -8.615850e-47 |
| Msa0796700 | Msa0972630 | 0.840394 | 8.926833e-58 | -8.615850e-47 |
| Msa0802830 | Msa0972630 | 0.808090 | 3.674130e-50 | -8.615850e-47 |
| Msa0804230 | Msa0972630 | 0.812528 | 4.051617e-51 | -8.615850e-47 |
| Msa0806790 | Msa0972630 | 0.802338 | 5.882861e-49 | -8.615850e-47 |
| Msa0813400 | Msa0972630 | 0.812643 | 3.824567e-51 | -8.615850e-47 |
| Msa0820770 | Msa0972630 | 0.826604 | 2.476761e-54 | -8.615850e-47 |
| Msa0820850 | Msa0972630 | 0.808258 | 3.383154e-50 | -8.615850e-47 |
| Msa0832150 | Msa0972630 | 0.818715 | 1.695813e-52 | -8.615850e-47 |
| Msa0832340 | Msa0972630 | 0.816749 | 4.710233e-52 | -8.615850e-47 |
| Msa0159930 | Msa0972630 | 0.814300 | 1.652567e-51 | -8.615850e-47 |
| Msa0166870 | Msa0972630 | 0.842601 | 2.341395e-58 | -8.615850e-47 |
| Msa0184040 | Msa0972630 | 0.800245 | 1.577514e-48 | -8.615850e-47 |
| Msa0188830 | Msa0972630 | 0.812404 | 4.313593e-51 | -8.615850e-47 |
| Msa0206010 | Msa0972630 | 0.805715 | 1.167591e-49 | -8.615850e-47 |
| Msa0210450 | Msa0972630 | 0.809870 | 1.527921e-50 | -8.615850e-47 |
| Msa0217680 | Msa0972630 | 0.813809 | 2.121104e-51 | -8.615850e-47 |
| Msa0218240 | Msa0972630 | 0.801514 | 8.687600e-49 | -8.615850e-47 |
| Msa0218270 | Msa0972630 | 0.813397 | 2.613740e-51 | -8.615850e-47 |
| Msa0219590 | Msa0972630 | 0.803067 | 4.159890e-49 | -8.615850e-47 |
| Msa0220580 | Msa0972630 | 0.838294 | 3.131443e-57 | -8.615850e-47 |
| Msa0223010 | Msa0972630 | 0.843585 | 1.279750e-58 | -8.615850e-47 |
| Msa0373450 | Msa0972630 | 0.801013 | 1.100187e-48 | -8.615850e-47 |
| Msa0376350 | Msa0972630 | 0.800537 | 1.375488e-48 | -8.615850e-47 |
| Msa0379640 | Msa0972630 | 0.802428 | 5.636455e-49 | -8.615850e-47 |
| Msa0393080 | Msa0972630 | 0.801515 | 8.684563e-49 | -8.615850e-47 |
| Msa0417270 | Msa0972630 | 0.800441 | 1.439243e-48 | -8.615850e-47 |
| Msa0440750 | Msa0972630 | 0.820953 | 5.221612e-53 | -8.615850e-47 |
| Msa0453640 | Msa0972630 | 0.804386 | 2.214779e-49 | -8.615850e-47 |
| Msa0479970 | Msa0972630 | 0.807768 | 4.300615e-50 | -8.615850e-47 |
| Msa0481530 | Msa0972630 | 0.807479 | 4.955021e-50 | -8.615850e-47 |
| Msa0260780 | Msa0972630 | 0.827590 | 1.438653e-54 | -8.615850e-47 |
| Msa0278190 | Msa0972630 | 0.803316 | 3.695496e-49 | -8.615850e-47 |
| Msa0280090 | Msa0972630 | 0.803868 | 2.837998e-49 | -8.615850e-47 |
| Msa0286670 | Msa0972630 | 0.800836 | 1.195486e-48 | -8.615850e-47 |
| Msa0287410 | Msa0972630 | 0.806004 | 1.015048e-49 | -8.615850e-47 |
| Msa0287650 | Msa0972630 | 0.800435 | 1.443258e-48 | -8.615850e-47 |
| Msa0288100 | Msa0972630 | 0.819148 | 1.352561e-52 | -8.615850e-47 |
| Msa0309770 | Msa0972630 | 0.841513 | 4.540692e-58 | -8.615850e-47 |
| Msa0318980 | Msa0972630 | 0.807061 | 6.075371e-50 | -8.615850e-47 |
| Msa0326110 | Msa0972630 | 0.801379 | 9.259754e-49 | -8.615850e-47 |
| Msa0333030 | Msa0972630 | 0.819987 | 8.701605e-53 | -8.615850e-47 |
| Msa0339620 | Msa0972630 | 0.835875 | 1.300322e-56 | -8.615850e-47 |
| Msa0345970 | Msa0972630 | 0.831418 | 1.688257e-55 | -8.615850e-47 |
| Msa0363790 | Msa0972630 | 0.808596 | 2.866237e-50 | -8.615850e-47 |
| Msa0484780 | Msa0972630 | 0.802744 | 4.851774e-49 | -8.615850e-47 |
| Msa0488560 | Msa0972630 | 0.807260 | 5.514637e-50 | -8.615850e-47 |
| Msa0493630 | Msa0972630 | 0.809020 | 2.325778e-50 | -8.615850e-47 |
| Msa0545210 | Msa0972630 | 0.807103 | 5.953212e-50 | -8.615850e-47 |
| Msa0577500 | Msa0972630 | 0.808724 | 2.691203e-50 | -8.615850e-47 |
| Msa0585230 | Msa0972630 | 0.805578 | 1.247656e-49 | -8.615850e-47 |
| Msa0602390 | Msa0972630 | 0.805282 | 1.439325e-49 | -8.615850e-47 |
| Msa0842620 | Msa0972630 | 0.832159 | 1.108299e-55 | -8.615850e-47 |
| Msa0861090 | Msa0972630 | 0.820805 | 5.649570e-53 | -8.615850e-47 |
| Msa0861130 | Msa0972630 | 0.813614 | 2.341573e-51 | -8.615850e-47 |
| Msa0880950 | Msa0972630 | 0.813754 | 2.180702e-51 | -8.615850e-47 |
| Msa0931520 | Msa0972630 | 0.804594 | 2.003800e-49 | -8.615850e-47 |
| Msa0935670 | Msa0972630 | 0.819144 | 1.355000e-52 | -8.615850e-47 |
| Msa0945970 | Msa0972630 | 0.826656 | 2.406681e-54 | -8.615850e-47 |
| Msa0963270 | Msa0972630 | 0.811834 | 5.740722e-51 | -8.615850e-47 |
| Msa0969520 | Msa0972630 | 0.803449 | 3.467432e-49 | -8.615850e-47 |
| Msa0972630 | Msa1006660 | 0.816202 | 6.243926e-52 | -8.615850e-47 |
| Msa0972630 | Msa1014540 | 0.803127 | 4.043532e-49 | -8.615850e-47 |
| Msa0972630 | Msa1028970 | 0.801396 | 9.182397e-49 | -8.615850e-47 |
| Msa0972630 | Msa1034150 | 0.800811 | 1.209853e-48 | -8.615850e-47 |
| Msa0972630 | Msa1054990 | 0.803169 | 3.963284e-49 | -8.615850e-47 |
| Msa0972630 | Msa1075650 | 0.835485 | 1.632516e-56 | -8.615850e-47 |
| Msa0972630 | Msa1082500 | 0.814283 | 1.666753e-51 | -8.615850e-47 |
| Msa0972630 | Msa1090260 | 0.801648 | 8.153370e-49 | -8.615850e-47 |
| Msa0972630 | Msa1114410 | 0.803279 | 3.759886e-49 | -8.615850e-47 |
| Msa0972630 | Msa1117170 | 0.811987 | 5.318196e-51 | -8.615850e-47 |
| Msa0972630 | Msa1131220 | 0.803356 | 3.624481e-49 | -8.615850e-47 |
| Msa0972630 | Msa1142020 | 0.812526 | 4.054918e-51 | -8.615850e-47 |
| Msa0972630 | Msa1147970 | 0.800363 | 1.492840e-48 | -8.615850e-47 |
| Msa0972630 | Msa1154280 | 0.807494 | 4.918538e-50 | -8.615850e-47 |
| Msa0972630 | Msa1171910 | 0.814386 | 1.581991e-51 | -8.615850e-47 |
| Msa0972630 | Msa1172400 | 0.812094 | 5.040809e-51 | -8.615850e-47 |
| Msa0972630 | Msa1174040 | 0.809526 | 1.811921e-50 | -8.615850e-47 |
| Msa0972630 | Msa1181250 | 0.806553 | 7.779559e-50 | -8.615850e-47 |
| Msa0972630 | Msa1204530 | 0.839888 | 1.210296e-57 | -8.615850e-47 |
| Msa0972630 | Msa1204630 | 0.812439 | 4.237080e-51 | -8.615850e-47 |
| Msa0972630 | Msa1224210 | 0.803806 | 2.924257e-49 | -8.615850e-47 |
| Msa0972630 | Msa1224340 | 0.832477 | 9.245694e-56 | -8.615850e-47 |
| Msa0972630 | Msa1224480 | 0.804307 | 2.299922e-49 | -8.615850e-47 |
| Msa0972630 | Msa1225130 | 0.826122 | 3.225463e-54 | -8.615850e-47 |
| Msa0972630 | Msa1228590 | 0.824170 | 9.329219e-54 | -8.615850e-47 |
| Msa0972630 | Msa1233890 | 0.834463 | 2.955014e-56 | -8.615850e-47 |
| Msa0972630 | Msa1247250 | 0.805471 | 1.313497e-49 | -8.615850e-47 |
| Msa0972630 | Msa1277660 | 0.808433 | 3.104153e-50 | -8.615850e-47 |
| Msa0972630 | Msa1284680 | 0.805057 | 1.604220e-49 | -8.615850e-47 |
| Msa0972630 | Msa1288420 | 0.833118 | 6.407361e-56 | -8.615850e-47 |
| Msa0972630 | Msa1296760 | 0.833361 | 5.574794e-56 | -8.615850e-47 |
| Msa0972630 | Msa1297290 | 0.835979 | 1.223698e-56 | -8.615850e-47 |
| Msa0972630 | Msa1305340 | 0.813791 | 2.140850e-51 | -8.615850e-47 |
| Msa0972630 | Msa1306840 | 0.803603 | 3.222572e-49 | -8.615850e-47 |
| Msa0972630 | Msa1318990 | 0.830053 | 3.645787e-55 | -8.615850e-47 |
| Msa0972630 | Msa1327550 | 0.805952 | 1.041030e-49 | -8.615850e-47 |
| Msa0972630 | Msa1329700 | 0.812664 | 3.783754e-51 | -8.615850e-47 |
| Msa0972630 | Msa1331000 | 0.842479 | 2.522567e-58 | -8.615850e-47 |
| Msa0972630 | Msa1341950 | 0.802127 | 6.501263e-49 | -8.615850e-47 |
| Msa0972630 | Msa1353980 | 0.820020 | 8.553636e-53 | -8.615850e-47 |
| Msa0972630 | Msa1359040 | 0.800732 | 1.255634e-48 | -8.615850e-47 |
| Msa0972630 | Msa1372760 | 0.817924 | 2.561589e-52 | -8.615850e-47 |
| Msa0972630 | Msa1373030 | 0.840007 | 1.126775e-57 | -8.615850e-47 |
| Msa0972630 | Msa1385000 | 0.836466 | 9.204792e-57 | -8.615850e-47 |
| Msa0972630 | Msa1392260 | 0.808634 | 2.813006e-50 | -8.615850e-47 |
| Msa0972630 | Msa1393570 | 0.811357 | 7.291743e-51 | -8.615850e-47 |
| Msa0972630 | Msa1397120 | 0.804160 | 2.467818e-49 | -8.615850e-47 |
| Msa0972630 | Msa1404300 | 0.814477 | 1.510188e-51 | -8.615850e-47 |
| Msa0972630 | Msa1409700 | 0.814395 | 1.575050e-51 | -8.615850e-47 |
| Msa0972630 | Msa1411020 | 0.816774 | 4.648827e-52 | -8.615850e-47 |
| Msa0972630 | Msa1420490 | 0.811470 | 6.890879e-51 | -8.615850e-47 |
| Msa0972630 | Msa1420820 | 0.809698 | 1.663516e-50 | -8.615850e-47 |
| Msa0972630 | Msa1423390 | 0.813311 | 2.729751e-51 | -8.615850e-47 |
| Msa0972630 | Msa1424290 | 0.818257 | 2.153945e-52 | -8.615850e-47 |
| Msa0972630 | Msa1424450 | 0.801756 | 7.749703e-49 | -8.615850e-47 |
| Msa0972630 | Msa1426030 | 0.806109 | 9.649044e-50 | -8.615850e-47 |
| Msa0972630 | Msa1426470 | 0.834360 | 3.135919e-56 | -8.615850e-47 |
| Msa0972630 | Msa1427230 | 0.834583 | 2.755386e-56 | -8.615850e-47 |
| Msa0972630 | Msa1434350 | 0.811244 | 7.715633e-51 | -8.615850e-47 |
| Msa0972630 | Msa1436480 | 0.816236 | 6.137394e-52 | -8.615850e-47 |
| Msa0972630 | Msa1436650 | 0.806667 | 7.360275e-50 | -8.615850e-47 |
| Msa0972630 | Msa1439320 | 0.811210 | 7.843998e-51 | -8.615850e-47 |
| Msa0972630 | Msa1440370 | 0.811945 | 5.431250e-51 | -8.615850e-47 |
| Msa0972630 | Msa1440810 | 0.814659 | 1.376637e-51 | -8.615850e-47 |
| Msa0972630 | Msa1443850 | 0.842743 | 2.146234e-58 | -8.615850e-47 |
| Msa0972630 | Msa1443880 | 0.832360 | 9.885216e-56 | -8.615850e-47 |
| Msa0972630 | Msa1452240 | 0.812572 | 3.963941e-51 | -8.615850e-47 |
| Msa0972630 | Msa1454620 | 0.821950 | 3.074892e-53 | -8.615850e-47 |
| Msa0972630 | Msa1460050 | 0.807718 | 4.408900e-50 | -8.615850e-47 |
| Msa0972630 | Msa1460830 | 0.839892 | 1.207216e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972630 | MtrunA17_Chr2g0298101 | 95.122 | 41 | 2 | 0 | 12 | 52 | 94 | 134 | 7.51e-21 | 85.5 |
| Msa0972630 | MtrunA17_Chr4g0067071 | 66.667 | 60 | 17 | 1 | 64 | 123 | 155 | 211 | 6.89e-16 | 70.5 |
| Msa0972630 | MtrunA17_Chr4g0067051 | 59.322 | 59 | 21 | 1 | 64 | 122 | 155 | 210 | 7.95e-13 | 62.4 |
| Msa0972630 | MtrunA17_Chr4g0067381 | 62.745 | 51 | 19 | 0 | 64 | 114 | 156 | 206 | 1.97e-12 | 61.2 |
| Msa0972630 | MtrunA17_Chr4g0067031 | 60.000 | 50 | 20 | 0 | 64 | 113 | 159 | 208 | 8.22e-12 | 60.8 |
| Msa0972630 | MtrunA17_Chr5g0396951 | 56.098 | 41 | 18 | 0 | 12 | 52 | 97 | 137 | 7.40e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972630 | AT5G57330.1 | 56.098 | 41 | 18 | 0 | 12 | 52 | 90 | 130 | 6.79e-11 | 58.2 |
Find 43 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTATATTGAATTTATT+TGG | 0.142969 | 6_4:-4945842 | Msa0972630:three_prime_UTR |
| AACTATCCCTATACAAGATT+TGG | 0.236483 | 6_4:+4945752 | None:intergenic |
| TTGGATTGAGATTTGCTTGT+TGG | 0.245272 | 6_4:-4948628 | Msa0972630:CDS |
| AGTTCTTACCTTTGAAATAA+AGG | 0.266059 | 6_4:+4948263 | None:intergenic |
| TCTTCCCCAAATCTTGTATA+GGG | 0.283293 | 6_4:-4945758 | Msa0972630:three_prime_UTR |
| TGGATTGAGATTTGCTTGTT+GGG | 0.284787 | 6_4:-4948627 | Msa0972630:CDS |
| TTCTTCCCCAAATCTTGTAT+AGG | 0.311667 | 6_4:-4945759 | Msa0972630:three_prime_UTR |
| CTTTGCAGAAACAATGATTA+AGG | 0.317528 | 6_4:-4945929 | Msa0972630:CDS |
| ACTATCCCTATACAAGATTT+GGG | 0.340396 | 6_4:+4945753 | None:intergenic |
| TTGCCATGCACTCTTCTCAT+TGG | 0.355246 | 6_4:-4945801 | Msa0972630:three_prime_UTR |
| CTCAAATTATTTGTTGGAAA+AGG | 0.358607 | 6_4:+4948460 | None:intergenic |
| TATATGATATTTCATATTAG+TGG | 0.360869 | 6_4:-4945592 | Msa0972630:three_prime_UTR |
| TTATTGGTATCTAGATTAAT+CGG | 0.368659 | 6_4:-4946050 | Msa0972630:intron |
| GATTTGCTAGAAATCGGGTT+TGG | 0.380185 | 6_4:-4948504 | Msa0972630:intron |
| ATTTGCTAGAAATCGGGTTT+GGG | 0.384232 | 6_4:-4948503 | Msa0972630:intron |
| TGAATTTATTTGGCTAAGAA+TGG | 0.399281 | 6_4:-4945832 | Msa0972630:three_prime_UTR |
| ATATGAAGATCTGGAATATC+AGG | 0.401227 | 6_4:-4948396 | Msa0972630:intron |
| CTGAAGAAGATATGAAGATC+TGG | 0.423890 | 6_4:-4948405 | Msa0972630:CDS |
| CCATGCACTCTTCTCATTGG+TGG | 0.425389 | 6_4:-4945798 | Msa0972630:three_prime_UTR |
| GCTTTGCTCAAATTATTTGT+TGG | 0.430674 | 6_4:+4948454 | None:intergenic |
| TTTGATATTGTAACAATGAC+AGG | 0.437242 | 6_4:-4945633 | Msa0972630:three_prime_UTR |
| AGTATGTCAAGGCTTCAAAT+TGG | 0.456191 | 6_4:-4945880 | Msa0972630:CDS |
| ATCTTGTATAGGGATAGTTT+AGG | 0.468140 | 6_4:-4945748 | Msa0972630:three_prime_UTR |
| GGAATGATTTGCTAGAAATC+GGG | 0.471341 | 6_4:-4948509 | Msa0972630:intron |
| ATACAAGATTTGGGGAAGAA+AGG | 0.497353 | 6_4:+4945762 | None:intergenic |
| AGGAGAAGGGTCGTCTTCAA+TGG | 0.498177 | 6_4:+4948480 | None:intergenic |
| GGATTGAGATTTGCTTGTTG+GGG | 0.506121 | 6_4:-4948626 | Msa0972630:CDS |
| AAGATTTGGGGAAGAAAGGA+AGG | 0.506654 | 6_4:+4945766 | None:intergenic |
| ATCTTCATATCTTCTTCAGA+GGG | 0.516649 | 6_4:+4948409 | None:intergenic |
| ATTGTTTCTGCAAAGTGTAT+CGG | 0.522932 | 6_4:+4945937 | None:intergenic |
| TTATTTGTTGGAAAAGGAGA+AGG | 0.530807 | 6_4:+4948466 | None:intergenic |
| GATCTTCATATCTTCTTCAG+AGG | 0.542491 | 6_4:+4948408 | None:intergenic |
| TAGATTAATCGGAAACATGC+AGG | 0.544910 | 6_4:-4946039 | Msa0972630:CDS |
| AAGCATAGTTACTGACATAG+AGG | 0.545162 | 6_4:+4945708 | None:intergenic |
| TATTTGTTGGAAAAGGAGAA+GGG | 0.555474 | 6_4:+4948467 | None:intergenic |
| TATTTGGCTAAGAATGGCCA+AGG | 0.557708 | 6_4:-4945826 | Msa0972630:three_prime_UTR |
| AAGAGTGCATGGCAAGACCT+TGG | 0.567658 | 6_4:+4945809 | None:intergenic |
| TTTAAGAATCAAATCAACAA+AGG | 0.599913 | 6_4:+4948432 | None:intergenic |
| ATTTGGGGAAGAAAGGAAGG+AGG | 0.603147 | 6_4:+4945769 | None:intergenic |
| CCACCAATGAGAAGAGTGCA+TGG | 0.616211 | 6_4:+4945798 | None:intergenic |
| GATTGAGATTTGCTTGTTGG+GGG | 0.618218 | 6_4:-4948625 | Msa0972630:intron |
| AGAGCTTGTTGATGAAACAC+AGG | 0.624120 | 6_4:-4946016 | Msa0972630:CDS |
| CTATCCCTATACAAGATTTG+GGG | 0.661248 | 6_4:+4945754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTCAGTTT+TGG | - | chr6_4:4945849-4945868 | Msa0972630:three_prime_UTR | 10.0% |
| !! | TGATTGATTATTATTATATT+TGG | - | chr6_4:4947746-4947765 | Msa0972630:intron | 10.0% |
| !! | ATCTTTATATTGAATTTATT+TGG | - | chr6_4:4948302-4948321 | Msa0972630:intron | 10.0% |
| !!! | TTTTTTTTAAAACACAATTA+TGG | + | chr6_4:4948619-4948638 | None:intergenic | 10.0% |
| !!! | AAAAAACTGATATTTTAAAT+CGG | + | chr6_4:4948672-4948691 | None:intergenic | 10.0% |
| !!! | TAAAATCTTTTAATTTACAT+CGG | + | chr6_4:4948727-4948746 | None:intergenic | 10.0% |
| !!! | AATTCTTTATATAGTTTTCA+AGG | - | chr6_4:4946339-4946358 | Msa0972630:intron | 15.0% |
| !!! | AAAATTACAATTGACTTTTA+TGG | + | chr6_4:4946450-4946469 | None:intergenic | 15.0% |
| !! | TAAAATAAACCATATTAGAA+TGG | + | chr6_4:4946755-4946774 | None:intergenic | 15.0% |
| !!! | TTAGTAGTTTTTTATATACA+GGG | + | chr6_4:4946897-4946916 | None:intergenic | 15.0% |
| !!! | ATTAGTAGTTTTTTATATAC+AGG | + | chr6_4:4946898-4946917 | None:intergenic | 15.0% |
| !! | TGTTTCAAAAAAAAAAAAAG+AGG | - | chr6_4:4947770-4947789 | Msa0972630:intron | 15.0% |
| !! | TTTATGATATTTCATATTAG+TGG | - | chr6_4:4948000-4948019 | Msa0972630:intron | 15.0% |
| !! | GAGATAAAAAATTAATATCA+AGG | + | chr6_4:4948071-4948090 | None:intergenic | 15.0% |
| !!! | AATTTTTTATCTCCATTTAT+TGG | - | chr6_4:4948078-4948097 | Msa0972630:intron | 15.0% |
| !! | TATATGATATTTCATATTAG+TGG | - | chr6_4:4948552-4948571 | Msa0972630:intron | 15.0% |
| !!! | TAAAACAGATAGATTTTAAA+TGG | - | chr6_4:4948640-4948659 | Msa0972630:intron | 15.0% |
| !!! | AAAACAGATAGATTTTAAAT+GGG | - | chr6_4:4948641-4948660 | Msa0972630:intron | 15.0% |
| !!! | ACTATTATTGTTGTTTAGAT+TGG | - | chr6_4:4945441-4945460 | Msa0972630:three_prime_UTR | 20.0% |
| !!! | ATTTTGGTTTTTCTTTTGTT+AGG | - | chr6_4:4945491-4945510 | Msa0972630:three_prime_UTR | 20.0% |
| !!! | TTTTGGTTTTTCTTTTGTTA+GGG | - | chr6_4:4945492-4945511 | Msa0972630:three_prime_UTR | 20.0% |
| !! | TTTAAGAATCAAATCAACAA+AGG | + | chr6_4:4945715-4945734 | None:intergenic | 20.0% |
| !!! | ACATTTTTCCTTTATTTCAA+AGG | - | chr6_4:4945873-4945892 | Msa0972630:exon | 20.0% |
| !!! | ATGAAAATGAATTTTCTATC+AGG | - | chr6_4:4946388-4946407 | Msa0972630:intron | 20.0% |
| !!! | TTATTTTCTAAGTTTCATCA+TGG | - | chr6_4:4946630-4946649 | Msa0972630:intron | 20.0% |
| !!! | AACTTTTCTTCTACAATTAT+TGG | - | chr6_4:4946682-4946701 | Msa0972630:intron | 20.0% |
| !!! | TAATAACTATTTGAGTTGTT+TGG | + | chr6_4:4946723-4946742 | None:intergenic | 20.0% |
| !! | TTATCCTCATATATTATTAG+TGG | - | chr6_4:4946775-4946794 | Msa0972630:intron | 20.0% |
| !! | TATCCTCATATATTATTAGT+GGG | - | chr6_4:4946776-4946795 | Msa0972630:intron | 20.0% |
| !!! | GGAGAATAATTTTCAATTTT+TGG | - | chr6_4:4947256-4947275 | Msa0972630:intron | 20.0% |
| !!! | TGTTTGGTTTTTTTTTTAGT+GGG | - | chr6_4:4947518-4947537 | Msa0972630:intron | 20.0% |
| !!! | ACATTTTTCCTTTATTTCAA+AGG | - | chr6_4:4945873-4945892 | Msa0972630:exon | 20.0% |
| !! | AATGAAATGAATGAATATCA+AGG | + | chr6_4:4948040-4948059 | None:intergenic | 20.0% |
| !! | TTAATCTAGATACCAATAAA+TGG | + | chr6_4:4948093-4948112 | None:intergenic | 20.0% |
| !! | TTATTGGTATCTAGATTAAT+CGG | - | chr6_4:4948094-4948113 | Msa0972630:intron | 20.0% |
| !!! | GGTTTTATATATTGTAACTT+TGG | - | chr6_4:4948483-4948502 | Msa0972630:CDS | 20.0% |
| !!! | AAACAGATAGATTTTAAATG+GGG | - | chr6_4:4948642-4948661 | Msa0972630:intron | 20.0% |
| !!! | TCTTGTTAACCTTTTTTAAA+TGG | - | chr6_4:4948695-4948714 | Msa0972630:intron | 20.0% |
| !!! | CTTGTTAACCTTTTTTAAAT+GGG | - | chr6_4:4948696-4948715 | Msa0972630:intron | 20.0% |
| !!! | ATTGTTGTTTAGATTGGTTA+CGG | - | chr6_4:4945447-4945466 | Msa0972630:three_prime_UTR | 25.0% |
| !!! | GGGTTTGAATTTTTTGAATT+GGG | - | chr6_4:4945539-4945558 | Msa0972630:three_prime_UTR | 25.0% |
| !! | CTCAAATTATTTGTTGGAAA+AGG | + | chr6_4:4945687-4945706 | None:intergenic | 25.0% |
| !!! | AGTTCTTACCTTTGAAATAA+AGG | + | chr6_4:4945884-4945903 | None:intergenic | 25.0% |
| !! | AAGAACTAACATGACATTTT+AGG | - | chr6_4:4945897-4945916 | Msa0972630:CDS | 25.0% |
| !! | AGAACTAACATGACATTTTA+GGG | - | chr6_4:4945898-4945917 | Msa0972630:CDS | 25.0% |
| !!! | CAAATTTGCAGGTTTTATTT+AGG | - | chr6_4:4946013-4946032 | Msa0972630:CDS | 25.0% |
| ! | CATCTTTACTGTTAGTTATT+AGG | + | chr6_4:4946049-4946068 | None:intergenic | 25.0% |
| ! | TAACTAACAGTAAAGATGTT+TGG | - | chr6_4:4946051-4946070 | Msa0972630:intron | 25.0% |
| !! | CTGTTTTATCAAAAACAAAC+AGG | + | chr6_4:4946142-4946161 | None:intergenic | 25.0% |
| !! | TCAATTGTAATTTTGTGTGT+TGG | - | chr6_4:4946456-4946475 | Msa0972630:intron | 25.0% |
| ! | AGAAAGCAACAATATCTATT+TGG | + | chr6_4:4946521-4946540 | None:intergenic | 25.0% |
| ! | CCATATATACACATATATGT+AGG | + | chr6_4:4946585-4946604 | None:intergenic | 25.0% |
| ! | CCTACATATATGTGTATATA+TGG | - | chr6_4:4946582-4946601 | Msa0972630:intron | 25.0% |
| ! | ATTTACTTGCCATTCTAATA+TGG | - | chr6_4:4946743-4946762 | Msa0972630:intron | 25.0% |
| ! | ATACCCACTAATAATATATG+AGG | + | chr6_4:4946782-4946801 | None:intergenic | 25.0% |
| !! | CTATAAGTGAATTTTATCCT+CGG | + | chr6_4:4947009-4947028 | None:intergenic | 25.0% |
| ! | ATGCACTTAATAACTTCAAT+AGG | - | chr6_4:4947235-4947254 | Msa0972630:intron | 25.0% |
| ! | TTTGGATCCAATATGATTAA+TGG | - | chr6_4:4947274-4947293 | Msa0972630:intron | 25.0% |
| ! | TGAAACTCCATTAATCATAT+TGG | + | chr6_4:4947284-4947303 | None:intergenic | 25.0% |
| ! | ACTAATATGATAAACTTCAC+AGG | + | chr6_4:4947326-4947345 | None:intergenic | 25.0% |
| ! | GTGAAGTTTATCATATTAGT+TGG | - | chr6_4:4947326-4947345 | Msa0972630:intron | 25.0% |
| ! | TAAACTTCAATTGACTAACT+AGG | - | chr6_4:4947378-4947397 | Msa0972630:intron | 25.0% |
| !!! | CTGTTTGGTTTTTTTTTTAG+TGG | - | chr6_4:4947517-4947536 | Msa0972630:intron | 25.0% |
| !!! | GTTTGGTTTTTTTTTTAGTG+GGG | - | chr6_4:4947519-4947538 | Msa0972630:intron | 25.0% |
| !! | ATACAAGAGAGTGTAAAATT+AGG | + | chr6_4:4947711-4947730 | None:intergenic | 25.0% |
| !!! | TGAGCATTTTTTTTCAGTTT+AGG | - | chr6_4:4947823-4947842 | Msa0972630:intron | 25.0% |
| ! | TGAATTTATTTGGCTAAGAA+TGG | - | chr6_4:4948312-4948331 | Msa0972630:intron | 25.0% |
| !!! | AACAATGTTTAGCTTTTGTT+TGG | - | chr6_4:4948462-4948481 | Msa0972630:CDS | 25.0% |
| ! | TTTGATATTGTAACAATGAC+AGG | - | chr6_4:4948511-4948530 | Msa0972630:intron | 25.0% |
| ! | GTTTTTCTTTTGTTAGGGTT+TGG | - | chr6_4:4945497-4945516 | Msa0972630:three_prime_UTR | 30.0% |
| !!! | GGGGTTTGAATTTTTTGAAT+TGG | - | chr6_4:4945538-4945557 | Msa0972630:three_prime_UTR | 30.0% |
| ! | TTTTGAATTGGGCTTTCAAA+TGG | - | chr6_4:4945550-4945569 | Msa0972630:three_prime_UTR | 30.0% |
| TTTGAATTGGGCTTTCAAAT+GGG | - | chr6_4:4945551-4945570 | Msa0972630:three_prime_UTR | 30.0% | |
| !! | TGGAATGATTTGCTAGAAAT+CGG | - | chr6_4:4945634-4945653 | Msa0972630:three_prime_UTR | 30.0% |
| ! | TATTTGTTGGAAAAGGAGAA+GGG | + | chr6_4:4945680-4945699 | None:intergenic | 30.0% |
| ! | TTATTTGTTGGAAAAGGAGA+AGG | + | chr6_4:4945681-4945700 | None:intergenic | 30.0% |
| GCTTTGCTCAAATTATTTGT+TGG | + | chr6_4:4945693-4945712 | None:intergenic | 30.0% | |
| ATCTTCATATCTTCTTCAGA+GGG | + | chr6_4:4945738-4945757 | None:intergenic | 30.0% | |
| ! | ATATGAAGATCTGGAATATC+AGG | - | chr6_4:4945748-4945767 | Msa0972630:three_prime_UTR | 30.0% |
| ! | TGAGCAAAGTCTTCTAATTT+TGG | - | chr6_4:4945813-4945832 | Msa0972630:three_prime_UTR | 30.0% |
| !!! | GAAATGGTTTTTTGATTGTG+TGG | - | chr6_4:4945963-4945982 | Msa0972630:CDS | 30.0% |
| AAAAAATGCAGCAAATTTGC+AGG | - | chr6_4:4946002-4946021 | Msa0972630:CDS | 30.0% | |
| !! | GTATGATGGACATAGAAAAA+AGG | + | chr6_4:4946111-4946130 | None:intergenic | 30.0% |
| AACAGGTATTATGTGTATGA+TGG | + | chr6_4:4946125-4946144 | None:intergenic | 30.0% | |
| CTATAAACTATTTCCTGTAG+TGG | + | chr6_4:4946414-4946433 | None:intergenic | 30.0% | |
| AACAATATCTATTTGGCTAC+TGG | + | chr6_4:4946514-4946533 | None:intergenic | 30.0% | |
| ATATAACGACTTGTGATTGT+AGG | + | chr6_4:4946546-4946565 | None:intergenic | 30.0% | |
| ! | ATGTGTATATATGGTTAGCT+TGG | - | chr6_4:4946591-4946610 | Msa0972630:intron | 30.0% |
| ! | CTACAATTATTGGTTAACAG+CGG | - | chr6_4:4946692-4946711 | Msa0972630:intron | 30.0% |
| ! | TACAATTATTGGTTAACAGC+GGG | - | chr6_4:4946693-4946712 | Msa0972630:intron | 30.0% |
| GAGGGAATTCATAATGAATT+AGG | + | chr6_4:4946813-4946832 | None:intergenic | 30.0% | |
| CTAAGTACACCAATGAATAA+CGG | + | chr6_4:4946868-4946887 | None:intergenic | 30.0% | |
| CTTTCGACAAAAAATGTGTA+TGG | + | chr6_4:4946927-4946946 | None:intergenic | 30.0% | |
| !!! | CATACACATTTTTTGTCGAA+AGG | - | chr6_4:4946925-4946944 | Msa0972630:intron | 30.0% |
| GTTATTAAGTGCATACAGAT+TGG | + | chr6_4:4947229-4947248 | None:intergenic | 30.0% | |
| TATGATAAACTTCACAGGTA+TGG | + | chr6_4:4947321-4947340 | None:intergenic | 30.0% | |
| AAGTTTATTCAAATTGAGCG+AGG | + | chr6_4:4947365-4947384 | None:intergenic | 30.0% | |
| GTAACATGATGTGATTCATA+AGG | - | chr6_4:4947433-4947452 | Msa0972630:intron | 30.0% | |
| ! | GATGTGATTCATAAGGATTT+TGG | - | chr6_4:4947440-4947459 | Msa0972630:intron | 30.0% |
| !!! | ATTCATAAGGATTTTGGCTT+GGG | - | chr6_4:4947446-4947465 | Msa0972630:intron | 30.0% |
| !! | AAACTGTGCTGGTAATTTTT+AGG | - | chr6_4:4947492-4947511 | Msa0972630:intron | 30.0% |
| !!! | CTGGTTTGTAGTGTATTTTT+TGG | - | chr6_4:4947629-4947648 | Msa0972630:intron | 30.0% |
| !!! | TTGGTCTAGTTTTTGCTTTT+TGG | - | chr6_4:4947648-4947667 | Msa0972630:intron | 30.0% |
| !!! | AGTTTTTGCTTTTTGGTGTT+TGG | - | chr6_4:4947655-4947674 | Msa0972630:intron | 30.0% |
| ! | GGTATGAAGTCTTCTAATTT+TGG | - | chr6_4:4947791-4947810 | Msa0972630:intron | 30.0% |
| !! | AGTTCTGACCTTTGAAATAA+AGG | + | chr6_4:4947858-4947877 | None:intergenic | 30.0% |
| ! | AGAACTAACATGACGTTTTA+GGG | - | chr6_4:4947872-4947891 | Msa0972630:intron | 30.0% |
| !!! | GAAATGGTTTTTTGATTGTG+TGG | - | chr6_4:4945963-4945982 | Msa0972630:CDS | 30.0% |
| AAAAAATGCAGCAAATTTGC+AGG | - | chr6_4:4946002-4946021 | Msa0972630:CDS | 30.0% | |
| !! | ATTGTTTCTGCAAAGTGTAT+CGG | + | chr6_4:4948210-4948229 | None:intergenic | 30.0% |
| CTTTGCAGAAACAATGATTA+AGG | - | chr6_4:4948215-4948234 | Msa0972630:intron | 30.0% | |
| ! | ATTTTATGTCGAGTATGTCA+AGG | - | chr6_4:4948253-4948272 | Msa0972630:intron | 30.0% |
| ACTATCCCTATACAAGATTT+GGG | + | chr6_4:4948394-4948413 | None:intergenic | 30.0% | |
| AACTATCCCTATACAAGATT+TGG | + | chr6_4:4948395-4948414 | None:intergenic | 30.0% | |
| ATCTTGTATAGGGATAGTTT+AGG | - | chr6_4:4948396-4948415 | Msa0972630:intron | 30.0% | |
| ! | TTGGATTGAGATTTGCTTGT+TGG | - | chr6_4:4945516-4945535 | Msa0972630:three_prime_UTR | 35.0% |
| ! | TGGATTGAGATTTGCTTGTT+GGG | - | chr6_4:4945517-4945536 | Msa0972630:three_prime_UTR | 35.0% |
| !!! | GCTTTCAAATGGGTTTTTTG+CGG | - | chr6_4:4945561-4945580 | Msa0972630:three_prime_UTR | 35.0% |
| CTGGTCATCAACAAAATTTG+TGG | - | chr6_4:4945614-4945633 | Msa0972630:three_prime_UTR | 35.0% | |
| !! | GGAATGATTTGCTAGAAATC+GGG | - | chr6_4:4945635-4945654 | Msa0972630:three_prime_UTR | 35.0% |
| ! | ATTTGCTAGAAATCGGGTTT+GGG | - | chr6_4:4945641-4945660 | Msa0972630:three_prime_UTR | 35.0% |
| GATCTTCATATCTTCTTCAG+AGG | + | chr6_4:4945739-4945758 | None:intergenic | 35.0% | |
| CTGAAGAAGATATGAAGATC+TGG | - | chr6_4:4945739-4945758 | Msa0972630:three_prime_UTR | 35.0% | |
| AGCAGGACAAATGATAGAAA+TGG | - | chr6_4:4945947-4945966 | Msa0972630:CDS | 35.0% | |
| ACTAAATGACATCCTGACTT+TGG | + | chr6_4:4946197-4946216 | None:intergenic | 35.0% | |
| TCATCATTACATGGTACTAG+TGG | + | chr6_4:4946486-4946505 | None:intergenic | 35.0% | |
| CTGCAACGATTATCATTAGA+GGG | + | chr6_4:4946831-4946850 | None:intergenic | 35.0% | |
| CGTTATTCATTGGTGTACTT+AGG | - | chr6_4:4946866-4946885 | Msa0972630:intron | 35.0% | |
| ! | TGTATCATTTTCTGTCAACG+AGG | + | chr6_4:4947035-4947054 | None:intergenic | 35.0% |
| AAATCAAGATATTGCAGCAC+AGG | + | chr6_4:4947080-4947099 | None:intergenic | 35.0% | |
| !! | CTTGATTTGTTCTATCGTGT+AGG | - | chr6_4:4947092-4947111 | Msa0972630:intron | 35.0% |
| TCCAAATGTAAGACCTACAA+TGG | + | chr6_4:4947185-4947204 | None:intergenic | 35.0% | |
| ! | TCATACTCACATAACTTGTG+AGG | - | chr6_4:4947404-4947423 | Msa0972630:intron | 35.0% |
| !!! | GATTCATAAGGATTTTGGCT+TGG | - | chr6_4:4947445-4947464 | Msa0972630:intron | 35.0% |
| !!! | GGTAATTTTTAGGTGCTGTT+TGG | - | chr6_4:4947502-4947521 | Msa0972630:intron | 35.0% |
| ! | CAGAACTAACATGACGTTTT+AGG | - | chr6_4:4947871-4947890 | Msa0972630:intron | 35.0% |
| AGCAGGACAAATGATAGAAA+TGG | - | chr6_4:4945947-4945966 | Msa0972630:CDS | 35.0% | |
| TAGATTAATCGGAAACATGC+AGG | - | chr6_4:4948105-4948124 | Msa0972630:intron | 35.0% | |
| AGTATGTCAAGGCTTCAAAT+TGG | - | chr6_4:4948264-4948283 | Msa0972630:intron | 35.0% | |
| ATACAAGATTTGGGGAAGAA+AGG | + | chr6_4:4948385-4948404 | None:intergenic | 35.0% | |
| TTCTTCCCCAAATCTTGTAT+AGG | - | chr6_4:4948385-4948404 | Msa0972630:intron | 35.0% | |
| TCTTCCCCAAATCTTGTATA+GGG | - | chr6_4:4948386-4948405 | Msa0972630:intron | 35.0% | |
| CTATCCCTATACAAGATTTG+GGG | + | chr6_4:4948393-4948412 | None:intergenic | 35.0% | |
| AAGCATAGTTACTGACATAG+AGG | + | chr6_4:4948439-4948458 | None:intergenic | 35.0% | |
| CGGATGAACCCATTTAAAAA+AGG | + | chr6_4:4948707-4948726 | None:intergenic | 35.0% | |
| ! | GGATTGAGATTTGCTTGTTG+GGG | - | chr6_4:4945518-4945537 | Msa0972630:three_prime_UTR | 40.0% |
| ! | GATTGAGATTTGCTTGTTGG+GGG | - | chr6_4:4945519-4945538 | Msa0972630:three_prime_UTR | 40.0% |
| !!! | GTTTTTTGCGGCAAATTCGT+CGG | - | chr6_4:4945573-4945592 | Msa0972630:three_prime_UTR | 40.0% |
| !!! | TTTTTTGCGGCAAATTCGTC+GGG | - | chr6_4:4945574-4945593 | Msa0972630:three_prime_UTR | 40.0% |
| !! | GATTTGCTAGAAATCGGGTT+TGG | - | chr6_4:4945640-4945659 | Msa0972630:three_prime_UTR | 40.0% |
| CACAACATTAACCATGCTCA+CGG | - | chr6_4:4946219-4946238 | Msa0972630:intron | 40.0% | |
| ACAACATTAACCATGCTCAC+GGG | - | chr6_4:4946220-4946239 | Msa0972630:intron | 40.0% | |
| ! | ATTTTCTATCAGGCCACTAC+AGG | - | chr6_4:4946398-4946417 | Msa0972630:intron | 40.0% |
| CTGGAGTCATCATCATTACA+TGG | + | chr6_4:4946495-4946514 | None:intergenic | 40.0% | |
| GCTGCAACGATTATCATTAG+AGG | + | chr6_4:4946832-4946851 | None:intergenic | 40.0% | |
| AATGAATTAACCTACTGCCG+AGG | - | chr6_4:4946989-4947008 | Msa0972630:intron | 40.0% | |
| ! | TGAATTTTATCCTCGGCAGT+AGG | + | chr6_4:4947002-4947021 | None:intergenic | 40.0% |
| CTATCGTGTAGGAAAAATGC+TGG | - | chr6_4:4947103-4947122 | Msa0972630:intron | 40.0% | |
| !! | AGGAAAAATGCTGGTTCTTG+TGG | - | chr6_4:4947112-4947131 | Msa0972630:intron | 40.0% |
| !! | GGAAAAATGCTGGTTCTTGT+GGG | - | chr6_4:4947113-4947132 | Msa0972630:intron | 40.0% |
| !! | GAAAAATGCTGGTTCTTGTG+GGG | - | chr6_4:4947114-4947133 | Msa0972630:intron | 40.0% |
| TGTAAGACCTACAATGGCAA+CGG | + | chr6_4:4947179-4947198 | None:intergenic | 40.0% | |
| GCCATTGTAGGTCTTACATT+TGG | - | chr6_4:4947181-4947200 | Msa0972630:intron | 40.0% | |
| GAATCACATCATGTTACCGA+AGG | + | chr6_4:4947430-4947449 | None:intergenic | 40.0% | |
| !!! | ATAAGGATTTTGGCTTGGGA+GGG | - | chr6_4:4947450-4947469 | Msa0972630:intron | 40.0% |
| !!! | GTTTTTTTTTTAGTGGGGCG+TGG | - | chr6_4:4947524-4947543 | Msa0972630:intron | 40.0% |
| !!! | TGTTTTTTCTGGTGTGTTGC+TGG | - | chr6_4:4947548-4947567 | Msa0972630:intron | 40.0% |
| !! | CTGCTAGCATTTTGTTTCCA+GGG | - | chr6_4:4947573-4947592 | Msa0972630:intron | 40.0% |
| !!! | TTTGCTTTTTGGTGTTTGGC+TGG | - | chr6_4:4947659-4947678 | Msa0972630:intron | 40.0% |
| GGATACAATTATACACCCAC+AGG | + | chr6_4:4947690-4947709 | None:intergenic | 40.0% | |
| !! | AGAGCTTGTTGATGAAACAC+AGG | - | chr6_4:4948128-4948147 | Msa0972630:intron | 40.0% |
| TATTTGGCTAAGAATGGCCA+AGG | - | chr6_4:4948318-4948337 | Msa0972630:intron | 40.0% | |
| AAGATTTGGGGAAGAAAGGA+AGG | + | chr6_4:4948381-4948400 | None:intergenic | 40.0% | |
| ! | TTTTTGCGGCAAATTCGTCG+GGG | - | chr6_4:4945575-4945594 | Msa0972630:three_prime_UTR | 45.0% |
| GGGAGTAGAGAAACTATGTC+TGG | - | chr6_4:4945595-4945614 | Msa0972630:three_prime_UTR | 45.0% | |
| TATGCTGAATGTGTTGCAGC+AGG | - | chr6_4:4945930-4945949 | Msa0972630:CDS | 45.0% | |
| GAATGAATGAGCCACTGTTG+TGG | - | chr6_4:4946167-4946186 | Msa0972630:intron | 45.0% | |
| ACTTTGGCAATCCACAACAG+TGG | + | chr6_4:4946181-4946200 | None:intergenic | 45.0% | |
| ! | TGTTGTGGATTGCCAAAGTC+AGG | - | chr6_4:4946182-4946201 | Msa0972630:intron | 45.0% |
| CGTGAGCATGGTTAATGTTG+TGG | + | chr6_4:4946221-4946240 | None:intergenic | 45.0% | |
| ATAATCGTTGCAGCCTTAGC+AGG | - | chr6_4:4946838-4946857 | Msa0972630:intron | 45.0% | |
| TCTTGTGGGGATGACATTTC+TGG | - | chr6_4:4947127-4947146 | Msa0972630:intron | 45.0% | |
| GAAACAACCGTTGCCATTGT+AGG | - | chr6_4:4947169-4947188 | Msa0972630:intron | 45.0% | |
| CTTCACAGGTATGGAGACAA+TGG | + | chr6_4:4947312-4947331 | None:intergenic | 45.0% | |
| ! | CACATAACTTGTGAGGCCTT+CGG | - | chr6_4:4947411-4947430 | Msa0972630:intron | 45.0% |
| !!! | CATAAGGATTTTGGCTTGGG+AGG | - | chr6_4:4947449-4947468 | Msa0972630:intron | 45.0% |
| !!! | TAAGGATTTTGGCTTGGGAG+GGG | - | chr6_4:4947451-4947470 | Msa0972630:intron | 45.0% |
| !!! | GGTGTTTTGAGAAACTGTGC+TGG | - | chr6_4:4947481-4947500 | Msa0972630:intron | 45.0% |
| !! | GCTGCTAGCATTTTGTTTCC+AGG | - | chr6_4:4947572-4947591 | Msa0972630:intron | 45.0% |
| !! | CATTTTGTTTCCAGGGACAG+AGG | - | chr6_4:4947580-4947599 | Msa0972630:intron | 45.0% |
| TATGCTGAATGTGTTGCAGC+AGG | - | chr6_4:4945930-4945949 | Msa0972630:CDS | 45.0% | |
| TTGCCATGCACTCTTCTCAT+TGG | - | chr6_4:4948343-4948362 | Msa0972630:intron | 45.0% | |
| ATTTGGGGAAGAAAGGAAGG+AGG | + | chr6_4:4948378-4948397 | None:intergenic | 45.0% | |
| !!! | TATAGTTTTTATTTTTATTT+TGG | - | chr6_4:4945475-4945494 | Msa0972630:three_prime_UTR | 5.0% |
| AGGAGAAGGGTCGTCTTCAA+TGG | + | chr6_4:4945667-4945686 | None:intergenic | 50.0% | |
| CTACACTTTACCCGTGAGCA+TGG | + | chr6_4:4946233-4946252 | None:intergenic | 50.0% | |
| !! | GAATAACGGCTAGCCTGCTA+AGG | + | chr6_4:4946854-4946873 | None:intergenic | 50.0% |
| ! | GCAGGCTAGCCGTTATTCAT+TGG | - | chr6_4:4946856-4946875 | Msa0972630:intron | 50.0% |
| TACAAACCAGCAGCGACAGA+GGG | + | chr6_4:4947619-4947638 | None:intergenic | 50.0% | |
| ! | TGTTTGGCTGGTTCATCCTG+TGG | - | chr6_4:4947671-4947690 | Msa0972630:intron | 50.0% |
| ! | GTTTGGCTGGTTCATCCTGT+GGG | - | chr6_4:4947672-4947691 | Msa0972630:intron | 50.0% |
| ! | AAGAGTGCATGGCAAGACCT+TGG | + | chr6_4:4948338-4948357 | None:intergenic | 50.0% |
| ! | CCACCAATGAGAAGAGTGCA+TGG | + | chr6_4:4948349-4948368 | None:intergenic | 50.0% |
| CCATGCACTCTTCTCATTGG+TGG | - | chr6_4:4948346-4948365 | Msa0972630:intron | 50.0% | |
| !!! | TGGGGCGTGGCTGTTTTTTC+TGG | - | chr6_4:4947537-4947556 | Msa0972630:intron | 55.0% |
| AACAGAACAGCCTCTGTCCC+TGG | + | chr6_4:4947593-4947612 | None:intergenic | 55.0% | |
| CTACAAACCAGCAGCGACAG+AGG | + | chr6_4:4947620-4947639 | None:intergenic | 55.0% | |
| ! | TGGCTTGGGAGGGGACTTCT+AGG | - | chr6_4:4947460-4947479 | Msa0972630:intron | 60.0% |
| ! | GTTTTGCCCTCTGTCGCTGC+TGG | - | chr6_4:4947610-4947629 | Msa0972630:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4945419 | 4948747 | 4945419 | ID=Msa0972630;Name=Msa0972630 |
| chr6_4 | mRNA | 4945419 | 4948747 | 4945419 | ID=Msa0972630-mRNA-1;Parent=Msa0972630;Name=Msa0972630-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0.16|1|0|0|6|457|123 |
| chr6_4 | exon | 4945419 | 4946058 | 4945419 | ID=Msa0972630-mRNA-1:exon:2142;Parent=Msa0972630-mRNA-1 |
| chr6_4 | exon | 4947806 | 4947813 | 4947806 | ID=Msa0972630-mRNA-1:exon:2141;Parent=Msa0972630-mRNA-1 |
| chr6_4 | exon | 4948272 | 4948300 | 4948272 | ID=Msa0972630-mRNA-1:exon:2140;Parent=Msa0972630-mRNA-1 |
| chr6_4 | exon | 4948397 | 4948516 | 4948397 | ID=Msa0972630-mRNA-1:exon:2139;Parent=Msa0972630-mRNA-1 |
| chr6_4 | exon | 4948626 | 4948653 | 4948626 | ID=Msa0972630-mRNA-1:exon:2138;Parent=Msa0972630-mRNA-1 |
| chr6_4 | exon | 4948744 | 4948747 | 4948744 | ID=Msa0972630-mRNA-1:exon:2137;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4948744 | 4948747 | 4948744 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4948626 | 4948653 | 4948626 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4948397 | 4948516 | 4948397 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4948272 | 4948300 | 4948272 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4947806 | 4947813 | 4947806 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | CDS | 4945876 | 4946058 | 4945876 | ID=Msa0972630-mRNA-1:cds;Parent=Msa0972630-mRNA-1 |
| chr6_4 | three_prime_UTR | 4945419 | 4945875 | 4945419 | ID=Msa0972630-mRNA-1:three_prime_utr;Parent=Msa0972630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
