AlfalfaGEDB | Msa1358360

M. sativa cultivar zhongmu-4 / Msa1358360

KEGG: K01919
GO: GO:0000003 GO:0000302 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004357 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006518 GO:0006575 GO:0006725 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009403 GO:0009404 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009700 GO:0009719 GO:0009725 GO:0009753 GO:0009791 GO:0009814 GO:0009816 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010193 GO:0016043 GO:0016143 GO:0016144 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019184 GO:0019438 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042398 GO:0042430 GO:0042435 GO:0042493 GO:0042545 GO:0042742 GO:0043043 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045229 GO:0046217 GO:0046483 GO:0046677 GO:0046686 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052314 GO:0052315 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0061458 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0090567 GO:0098542 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
PFAM: PF04107.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358360	CAL59719.1	100.000	167	0	0	1	167	40	206	2.87e-117	340

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358360	sp\|Q9ZNX6\|GSH1_MEDTR	100.000	167	0	0	1	167	342	508	5.62e-118	345

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358360	Q05FZ9	100.000	167	0	0	1	167	40	206	1.37e-117	340

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047980	Msa1358360	0.809147	2.185023e-50	-8.615850e-47
Msa0051630	Msa1358360	0.808697	2.726861e-50	-8.615850e-47
Msa0051740	Msa1358360	0.826234	3.033429e-54	-8.615850e-47
Msa0051750	Msa1358360	0.818058	2.388845e-52	-8.615850e-47
Msa0079920	Msa1358360	0.800688	1.281451e-48	-8.615850e-47
Msa0090360	Msa1358360	0.816541	5.242735e-52	-8.615850e-47
Msa0094920	Msa1358360	0.806597	7.615181e-50	-8.615850e-47
Msa1353060	Msa1358360	0.813613	2.342989e-51	-8.615850e-47
Msa1358360	Msa1368120	0.815085	1.107543e-51	-8.615850e-47
Msa1358360	Msa1369470	0.826983	2.010582e-54	-8.615850e-47
Msa1358360	Msa1393740	0.808039	3.765975e-50	-8.615850e-47
Msa1358360	Msa1404190	0.804750	1.859116e-49	-8.615850e-47
Msa1358360	Msa1427060	0.806832	6.793100e-50	-8.615850e-47
Msa1358360	Msa1433390	0.814039	1.887300e-51	-8.615850e-47
Msa0660320	Msa1358360	0.824787	6.680577e-54	-8.615850e-47
Msa0692840	Msa1358360	0.803877	2.826403e-49	-8.615850e-47
Msa0711780	Msa1358360	0.805567	1.254531e-49	-8.615850e-47
Msa0711890	Msa1358360	0.804420	2.178834e-49	-8.615850e-47
Msa0724830	Msa1358360	0.824218	9.090037e-54	-8.615850e-47
Msa0750880	Msa1358360	0.815331	9.764644e-52	-8.615850e-47
Msa0777990	Msa1358360	0.809846	1.546615e-50	-8.615850e-47
Msa0786270	Msa1358360	0.825625	4.232209e-54	-8.615850e-47
Msa0794670	Msa1358360	0.810913	9.101095e-51	-8.615850e-47
Msa0820990	Msa1358360	0.801651	8.143087e-49	-8.615850e-47
Msa0125450	Msa1358360	0.801323	9.506604e-49	-8.615850e-47
Msa0125540	Msa1358360	0.803559	3.290376e-49	-8.615850e-47
Msa0137840	Msa1358360	0.824848	6.463527e-54	-8.615850e-47
Msa0184040	Msa1358360	0.817415	3.337332e-52	-8.615850e-47
Msa0191440	Msa1358360	0.829989	3.780721e-55	-8.615850e-47
Msa1328710	Msa1358360	0.804868	1.757275e-49	-8.615850e-47
Msa1336710	Msa1358360	0.804405	2.194637e-49	-8.615850e-47
Msa1340020	Msa1358360	0.801233	9.918771e-49	-8.615850e-47
Msa0372660	Msa1358360	0.816068	6.690808e-52	-8.615850e-47
Msa0372670	Msa1358360	0.826243	3.019252e-54	-8.615850e-47
Msa0376300	Msa1358360	0.811975	5.350687e-51	-8.615850e-47
Msa0471590	Msa1358360	0.816740	4.732608e-52	-8.615850e-47
Msa0986920	Msa1358360	0.801525	8.641964e-49	-8.615850e-47
Msa1005990	Msa1358360	0.814658	1.377289e-51	-8.615850e-47
Msa1017630	Msa1358360	0.802757	4.821573e-49	-8.615850e-47
Msa0260210	Msa1358360	0.805101	1.570795e-49	-8.615850e-47
Msa0300120	Msa1358360	0.808471	3.047472e-50	-8.615850e-47
Msa0304290	Msa1358360	0.813580	2.382182e-51	-8.615850e-47
Msa0304330	Msa1358360	0.815418	9.339627e-52	-8.615850e-47
Msa0311700	Msa1358360	0.801983	6.958579e-49	-8.615850e-47
Msa0324240	Msa1358360	0.804908	1.723001e-49	-8.615850e-47
Msa1113670	Msa1358360	0.821806	3.318784e-53	-8.615850e-47
Msa1126770	Msa1358360	0.802486	5.484952e-49	-8.615850e-47
Msa1135470	Msa1358360	0.800248	1.575109e-48	-8.615850e-47
Msa1184380	Msa1358360	0.810262	1.257716e-50	-8.615850e-47
Msa0552810	Msa1358360	0.803376	3.590677e-49	-8.615850e-47
Msa0578860	Msa1358360	0.823891	1.084819e-53	-8.615850e-47
Msa0594910	Msa1358360	0.808613	2.841694e-50	-8.615850e-47
Msa0842830	Msa1358360	0.807396	5.158863e-50	-8.615850e-47
Msa0968590	Msa1358360	0.809754	1.618161e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358360	MtrunA17_Chr8g0386791	100.000	167	0	1	167	342	508	4.14e-119	345
Msa1358360	MtrunA17_Chr5g0397471	67.665	167	54	1	167	346	512	2.98e-80	246
Msa1358360	MtrunA17_Chr5g0397441	64.242	165	59	3	167	1	165	6.86e-73	216

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1358360	AT4G23100.3	85.542	166	24	2	167	357	522	1.47e-101	301
Msa1358360	AT4G23100.1	85.542	166	24	2	167	357	522	1.47e-101	301
Msa1358360	AT4G23100.2	87.719	114	14	2	115	357	470	7.73e-69	216

Find 57 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGAAAGAAGAGGCTTTA+AGG	0.162482	tig0016232:-8616	Msa1358360:CDS
AATGATTCTCCCAATCATTA+AGG	0.238191	tig0016232:+10282	Msa1358360:intergenic
GGTTAGGCTAAAGAGGTATT+TGG	0.243859	tig0016232:-10131	Msa1358360:CDS
CACTCCAGCTGAGAGGCTTT+TGG	0.263032	tig0016232:-7820	Msa1358360:CDS
AAGAGAAATGCTAAGGAATA+AGG	0.286293	tig0016232:-9775	Msa1358360:intron
GGTTTCTTTGCAACGTGTTT+TGG	0.299905	tig0016232:-9826	Msa1358360:CDS
ACACACGATTCTACCCAAAA+AGG	0.302956	tig0016232:+7675	Msa1358360:intergenic
TATGTGCTTTACCAGCATTT+TGG	0.319362	tig0016232:-10072	Msa1358360:CDS
TTGCTATACTAAGGTGTATT+CGG	0.322165	tig0016232:-7747	Msa1358360:exon
CTCTGGCAGGTCACCGTAAC+CGG	0.345887	tig0016232:-8785	Msa1358360:intron
GGAAAGCTTCCTTGTATTCC+TGG	0.357140	tig0016232:-10317	Msa1358360:CDS
AATTACCGACCCTTAATGAT+TGG	0.403403	tig0016232:-10292	Msa1358360:CDS
TGGAATTGTATCATGGAAAG+TGG	0.417984	tig0016232:-7800	Msa1358360:CDS
TGGTGTCTTTAGACCGGTTA+CGG	0.418673	tig0016232:+8772	Msa1358360:intergenic
ATCTCACAAGAGAGATAGCC+AGG	0.430652	tig0016232:+7633	Msa1358360:intergenic
AAAGTTCGTTCAAACAACTT+TGG	0.433129	tig0016232:+7492	Msa1358360:intergenic
CTTTCCAGGTTAGGCTAAAG+AGG	0.433938	tig0016232:-10138	Msa1358360:intron
AAGAAGAGGCTTTAAGGAAT+CGG	0.459020	tig0016232:-8610	Msa1358360:CDS
TTCTTTCACATTTCTGTGGG+AGG	0.465939	tig0016232:-7714	Msa1358360:three_prime_UTR
ATGATTCTCCCAATCATTAA+GGG	0.470462	tig0016232:+10283	Msa1358360:intergenic
AGAAGAGGCTTTAAGGAATC+GGG	0.474397	tig0016232:-8609	Msa1358360:CDS
ATTACCGACCCTTAATGATT+GGG	0.480585	tig0016232:-10291	Msa1358360:CDS
TTACTGTAGGACTTCTTGGC+AGG	0.481332	tig0016232:-10338	None:intergenic
TTTGACGAATTGCTATACTA+AGG	0.490910	tig0016232:-7756	Msa1358360:exon
CACAAACTCACCCAAAATGC+TGG	0.496129	tig0016232:+10061	Msa1358360:intergenic
TTCAGCAAACCATCTCGAAA+TGG	0.502074	tig0016232:+8752	Msa1358360:intergenic
ACAAACCTCGGGAAATATAG+TGG	0.505786	tig0016232:+10256	Msa1358360:intergenic
TATGTATCTACAGGATGGCT+TGG	0.508849	tig0016232:-8634	Msa1358360:intron
GCTGAAGCATGTTGCTGAAG+AGG	0.509896	tig0016232:-8735	Msa1358360:CDS
AATTCCAAAAGCCTCTCAGC+TGG	0.510828	tig0016232:+7816	Msa1358360:intergenic
GAGGTGCTGATGGAGGGCCT+TGG	0.514200	tig0016232:-10102	Msa1358360:CDS
GTAGCTGAGGTGGTTAGAAC+AGG	0.514281	tig0016232:-8573	Msa1358360:intron
TTGGAGATGAGAGGTGCTGA+TGG	0.515883	tig0016232:-10112	Msa1358360:CDS
CTGATGGAGGGCCTTGGAGA+AGG	0.524829	tig0016232:-10096	Msa1358360:CDS
TGCTGAAGAGGTTCTAGAGC+TGG	0.536393	tig0016232:-8723	Msa1358360:CDS
TCGAAATGGTGTCTTTAGAC+CGG	0.540053	tig0016232:+8766	Msa1358360:intergenic
AAACTCTGGCTATATAGTCC+TGG	0.546182	tig0016232:-7651	Msa1358360:three_prime_UTR
GGAATTGTATCATGGAAAGT+GGG	0.552480	tig0016232:-7799	Msa1358360:CDS
TAGAAGAAAGAGAAATGCTA+AGG	0.561246	tig0016232:-9782	Msa1358360:CDS
TAGAATCGTGTGTAAAACTC+TGG	0.561580	tig0016232:-7665	Msa1358360:three_prime_UTR
GGTAATTCACCAGGAATACA+AGG	0.562503	tig0016232:+10308	Msa1358360:intergenic
CTAAAGACACCATTTCGAGA+TGG	0.576781	tig0016232:-8761	Msa1358360:CDS
AGCTAGTATTTAATTCATGT+CGG	0.579380	tig0016232:-7549	Msa1358360:three_prime_UTR
TCTAAATGCGGTAGCTGAGG+TGG	0.582814	tig0016232:-8583	Msa1358360:CDS
CAGGATGGCTTGGAAAGAAG+AGG	0.591818	tig0016232:-8624	Msa1358360:CDS
TTAAGGGTCGGTAATTCACC+AGG	0.604160	tig0016232:+10299	Msa1358360:intergenic
CAGGTGTCACTCCAGCTGAG+AGG	0.611225	tig0016232:-7827	Msa1358360:CDS
ATTTCTAAATGCGGTAGCTG+AGG	0.616025	tig0016232:-8586	Msa1358360:CDS
TTCTCCCAATCATTAAGGGT+CGG	0.628384	tig0016232:+10287	Msa1358360:intergenic
GAGATGAGAGGTGCTGATGG+AGG	0.629565	tig0016232:-10109	Msa1358360:CDS
AGATGAGAGGTGCTGATGGA+GGG	0.638194	tig0016232:-10108	Msa1358360:CDS
AAGAGGTATTTGGAGATGAG+AGG	0.640411	tig0016232:-10121	Msa1358360:CDS
AAAGCACATAACCTTCTCCA+AGG	0.645896	tig0016232:+10085	Msa1358360:intergenic
TTTGACCACTATATTTCCCG+AGG	0.655534	tig0016232:-10261	Msa1358360:intron
GGTAGGGATATTGTACGATG+AGG	0.665122	tig0016232:-9847	Msa1358360:CDS
AGAGGTTCTAGAGCTGGCAA+AGG	0.684570	tig0016232:-8717	Msa1358360:intron
GGAATCGGGATTTCTAAATG+CGG	0.701354	tig0016232:-8595	Msa1358360:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATGTTTTTTTTTTTTTTGAA+CGG	+	tig0016232:8173-8192	Msa1358360:intergenic	10.0%
!!!	TATGTGTTTAATATTTTTTA+TGG	-	tig0016232:9950-9969	Msa1358360:intron	10.0%
!!!	TATTAGTTTTACAATTTAAC+TGG	-	tig0016232:7573-7592	Msa1358360:three_prime_UTR	15.0%
!!!	TATTTCAATTTTTACTTGTT+AGG	-	tig0016232:8429-8448	Msa1358360:intron	15.0%
!!!	ATTTCAATTTTTACTTGTTA+GGG	-	tig0016232:8430-8449	Msa1358360:intron	15.0%
!!!	TTTTTAAAAAAAAAACAAGG+AGG	+	tig0016232:8809-8828	Msa1358360:intergenic	15.0%
!!	ATTCATAATTTATATCTAGT+TGG	-	tig0016232:9350-9369	Msa1358360:intron	15.0%
!!	ATATATGTACTAACATAATA+TGG	+	tig0016232:9530-9549	Msa1358360:intergenic	15.0%
!!	AAACTAATAAAAACAAACCT+CGG	+	tig0016232:7562-7581	Msa1358360:intergenic	20.0%
!!	TAGTAAAATAACTACGAAAA+TGG	+	tig0016232:7627-7646	Msa1358360:intergenic	20.0%
!!	AATGAAGAAAAAATATTGCA+AGG	+	tig0016232:8060-8079	Msa1358360:intergenic	20.0%
!!!	TTGAAAGAAAAGCTATTTTT+GGG	+	tig0016232:8124-8143	Msa1358360:intergenic	20.0%
!!!	ATTGAAAGAAAAGCTATTTT+TGG	+	tig0016232:8125-8144	Msa1358360:intergenic	20.0%
!!	TTAATTTCAGAAATAGTCAT+TGG	-	tig0016232:8640-8659	Msa1358360:intron	20.0%
!!	TAATTTCAGAAATAGTCATT+GGG	-	tig0016232:8641-8660	Msa1358360:intron	20.0%
!!!	AGTTAACAATCACTTTTTAT+GGG	+	tig0016232:8773-8792	Msa1358360:intergenic	20.0%
!!!	TAGTTAACAATCACTTTTTA+TGG	+	tig0016232:8774-8793	Msa1358360:intergenic	20.0%
!!!	CGTTTGTTTTAGATTTTTTT+AGG	+	tig0016232:8954-8973	Msa1358360:intergenic	20.0%
!!	AGAAATTTAGTATGGATAAT+GGG	+	tig0016232:8979-8998	Msa1358360:intergenic	20.0%
!!	TAGAAATTTAGTATGGATAA+TGG	+	tig0016232:8980-8999	Msa1358360:intergenic	20.0%
!!	ATCAGTATAGAAATTTAGTA+TGG	+	tig0016232:8987-9006	Msa1358360:intergenic	20.0%
!!	TAAATTTCTATACTGATAAC+CGG	-	tig0016232:8990-9009	Msa1358360:intron	20.0%
!!	TAGTACATATATCTCTATAA+TGG	-	tig0016232:9538-9557	Msa1358360:intron	20.0%
!!	AGTACATATATCTCTATAAT+GGG	-	tig0016232:9539-9558	Msa1358360:intron	20.0%
!!!	GATCAAAGTTATTTTTTTCT+TGG	-	tig0016232:9773-9792	Msa1358360:intron	20.0%
!!	AAATTAACTAATGCAATCAT+TGG	-	tig0016232:9892-9911	Msa1358360:intron	20.0%
!!	AAATATTAAACACATACCAA+AGG	+	tig0016232:9946-9965	Msa1358360:intergenic	20.0%
!!!	GTGTTTAATATTTTTTATGG+TGG	-	tig0016232:9953-9972	Msa1358360:intron	20.0%
!	AACTAATAAAAACAAACCTC+GGG	+	tig0016232:7561-7580	Msa1358360:intergenic	25.0%
!	AAGCTGAAAAAATTATGAAG+TGG	-	tig0016232:8403-8422	Msa1358360:intron	25.0%
!!	GATAAATATGATTTGAAACC+TGG	-	tig0016232:8469-8488	Msa1358360:intron	25.0%
!!!	CTCTAAAATGAAAAGCTATT+AGG	+	tig0016232:8854-8873	Msa1358360:intergenic	25.0%
!!	TGTCATTTAAGTGTTTGTTT+AGG	+	tig0016232:8915-8934	Msa1358360:intergenic	25.0%
!	GTACATATATCTCTATAATG+GGG	-	tig0016232:9540-9559	Msa1358360:intron	25.0%
!	TATATGTACTATTAAGAGTC+CGG	+	tig0016232:9568-9587	Msa1358360:intergenic	25.0%
!	ATGCTATAATATTTGAGAGT+TGG	-	tig0016232:9811-9830	Msa1358360:CDS	25.0%
!!!	TTAATATTTTTTATGGTGGC+AGG	-	tig0016232:9957-9976	Msa1358360:intron	25.0%
!!!	ATCTGATGTATTTTTTTGCT+TGG	-	tig0016232:10215-10234	Msa1358360:intron	25.0%
!	AGCTAGTATTTAATTCATGT+CGG	-	tig0016232:10254-10273	Msa1358360:intron	25.0%
	ATGATTCTCCCAATCATTAA+GGG	+	tig0016232:7523-7542	Msa1358360:intergenic	30.0%
	AATGATTCTCCCAATCATTA+AGG	+	tig0016232:7524-7543	Msa1358360:intergenic	30.0%
	ACTTAAACATTACTCTTTCC+AGG	-	tig0016232:7651-7670	Msa1358360:three_prime_UTR	30.0%
	TATGTTATGTGACTTTCTCA+AGG	+	tig0016232:7793-7812	Msa1358360:intergenic	30.0%
	AGTCACATAACATATTCGAA+AGG	-	tig0016232:7799-7818	Msa1358360:CDS	30.0%
	ATAGAAGAACATGCAAAGAA+GGG	+	tig0016232:7883-7902	Msa1358360:intergenic	30.0%
	TAGAAGAAAGAGAAATGCTA+AGG	-	tig0016232:8021-8040	Msa1358360:intron	30.0%
	AAGAGAAATGCTAAGGAATA+AGG	-	tig0016232:8028-8047	Msa1358360:intron	30.0%
!!!	TTTTTTTTGAACGGCATGAA+GGG	+	tig0016232:8164-8183	Msa1358360:intergenic	30.0%
!!!	TTTTTTTTTGAACGGCATGA+AGG	+	tig0016232:8165-8184	Msa1358360:intergenic	30.0%
!!	AGAAATGGATTTTGCATGAA+GGG	+	tig0016232:8198-8217	Msa1358360:intergenic	30.0%
!!	TAGAAATGGATTTTGCATGA+AGG	+	tig0016232:8199-8218	Msa1358360:intergenic	30.0%
	AAGATTTAATTGCAGAAAGC+TGG	+	tig0016232:8242-8261	Msa1358360:intergenic	30.0%
	TACTAGAAAAAGGATAACTG+AGG	-	tig0016232:8325-8344	Msa1358360:intron	30.0%
	GGATAAACACTTGATCAAAA+TGG	-	tig0016232:8346-8365	Msa1358360:intron	30.0%
!	AGCTAACTTAAGTTTTCAGA+CGG	+	tig0016232:8380-8399	Msa1358360:intergenic	30.0%
!	AATATGATTTGAAACCTGGA+TGG	-	tig0016232:8473-8492	Msa1358360:intron	30.0%
	TTTAACTGAGCCATGAAATA+GGG	+	tig0016232:9323-9342	Msa1358360:intergenic	30.0%
	ATTTAACTGAGCCATGAAAT+AGG	+	tig0016232:9324-9343	Msa1358360:intergenic	30.0%
	ATAATCACTAGAAGTTAGCT+TGG	+	tig0016232:9486-9505	Msa1358360:intergenic	30.0%
!	AACTCTTCACAATTTTGCAT+TGG	+	tig0016232:9666-9685	Msa1358360:intergenic	30.0%
!	CTTATAACGTTGAGATTTTG+TGG	-	tig0016232:9740-9759	Msa1358360:intron	30.0%
!!	TGAGATTTTGTGGTTGATTT+AGG	-	tig0016232:9750-9769	Msa1358360:intron	30.0%
!!	GAGATTTTGTGGTTGATTTA+GGG	-	tig0016232:9751-9770	Msa1358360:intron	30.0%
	ATTCTACCACAAGTTTATGA+AGG	+	tig0016232:9870-9889	Msa1358360:intergenic	30.0%
!!	GAAGTTTTATCTGTTTCCTT+TGG	-	tig0016232:9927-9946	Msa1358360:intron	30.0%
	TTTGACGAATTGCTATACTA+AGG	-	tig0016232:10047-10066	Msa1358360:intron	30.0%
	TTGCTATACTAAGGTGTATT+CGG	-	tig0016232:10056-10075	Msa1358360:intron	30.0%
!	CTTTTCTTTCACATTTCTGT+GGG	-	tig0016232:10086-10105	Msa1358360:CDS	30.0%
!	AATTGTATAAGCCACCTTTT+TGG	-	tig0016232:10114-10133	Msa1358360:CDS	30.0%
!	ATTGTATAAGCCACCTTTTT+GGG	-	tig0016232:10115-10134	Msa1358360:CDS	30.0%
	AAAGTTCGTTCAAACAACTT+TGG	+	tig0016232:10314-10333	Msa1358360:intergenic	30.0%
	AATTACCGACCCTTAATGAT+TGG	-	tig0016232:7511-7530	Msa1358360:three_prime_UTR	35.0%
	ATTACCGACCCTTAATGATT+GGG	-	tig0016232:7512-7531	Msa1358360:three_prime_UTR	35.0%
	AACATTACTCTTTCCAGGTT+AGG	-	tig0016232:7656-7675	Msa1358360:three_prime_UTR	35.0%
!	TATGTGCTTTACCAGCATTT+TGG	-	tig0016232:7731-7750	Msa1358360:three_prime_UTR	35.0%
!	ATGTGCTTTACCAGCATTTT+GGG	-	tig0016232:7732-7751	Msa1358360:three_prime_UTR	35.0%
	CATAGAAGAACATGCAAAGA+AGG	+	tig0016232:7884-7903	Msa1358360:intergenic	35.0%
!	TTTTGGATATGACAGCAGAT+TGG	-	tig0016232:7994-8013	Msa1358360:intron	35.0%
!!!	TTTTTTTGAACGGCATGAAG+GGG	+	tig0016232:8163-8182	Msa1358360:intergenic	35.0%
!!	GAAATGGATTTTGCATGAAG+GGG	+	tig0016232:8197-8216	Msa1358360:intergenic	35.0%
	ATCCATTTCTACTTGAAGCA+TGG	-	tig0016232:8208-8227	Msa1358360:intron	35.0%
	TCCATTTCTACTTGAAGCAT+GGG	-	tig0016232:8209-8228	Msa1358360:intron	35.0%
!!	AAATGGATTTTGCATGAAGG+GGG	+	tig0016232:8196-8215	Msa1358360:intergenic	35.0%
!!	CAAATGGATTTTGCATGAAG+GGG	+	tig0016232:8272-8291	Msa1358360:intergenic	35.0%
!!	CCAAATGGATTTTGCATGAA+GGG	+	tig0016232:8273-8292	Msa1358360:intergenic	35.0%
	CCTTCATGCAAAATCCATTT+GGG	-	tig0016232:8196-8215	Msa1358360:intron	35.0%
!!	CTTTTTCTAGTACAGAAAGC+TGG	+	tig0016232:8317-8336	Msa1358360:intergenic	35.0%
	CAGCTTTCTGTACTAGAAAA+AGG	-	tig0016232:8315-8334	Msa1358360:intron	35.0%
!!	ATGGATTGGTATGTATCTAC+AGG	-	tig0016232:9160-9179	Msa1358360:intron	35.0%
	ATTGGTATGTATCTACAGGA+TGG	-	tig0016232:9164-9183	Msa1358360:intron	35.0%
!!	AAGAAGAGGCTTTAAGGAAT+CGG	-	tig0016232:9193-9212	Msa1358360:intron	35.0%
	ACAGCCTCTAACTAAAACAA+GGG	+	tig0016232:9376-9395	Msa1358360:intergenic	35.0%
	AACAGCCTCTAACTAAAACA+AGG	+	tig0016232:9377-9396	Msa1358360:intergenic	35.0%
!	ATATCTCTATAATGGGGTAC+CGG	-	tig0016232:9546-9565	Msa1358360:intron	35.0%
!!	TATTTGAGAGTTGGTATCCA+TGG	-	tig0016232:9820-9839	Msa1358360:CDS	35.0%
	ATGTTAAGCTTGAAAGTCCA+TGG	+	tig0016232:9840-9859	Msa1358360:intergenic	35.0%
!!!	AGGCTTTTGGAATTGTATCA+TGG	-	tig0016232:9996-10015	Msa1358360:intron	35.0%
	TGGAATTGTATCATGGAAAG+TGG	-	tig0016232:10003-10022	Msa1358360:intron	35.0%
	GGAATTGTATCATGGAAAGT+GGG	-	tig0016232:10004-10023	Msa1358360:intron	35.0%
!	GCTTTTCTTTCACATTTCTG+TGG	-	tig0016232:10085-10104	Msa1358360:CDS	35.0%
	TAGAATCGTGTGTAAAACTC+TGG	-	tig0016232:10138-10157	Msa1358360:intron	35.0%
	GGTAATTCACCAGGAATACA+AGG	+	tig0016232:7498-7517	Msa1358360:intergenic	40.0%
	TTCTCCCAATCATTAAGGGT+CGG	+	tig0016232:7519-7538	Msa1358360:intergenic	40.0%
	TTTGACCACTATATTTCCCG+AGG	-	tig0016232:7542-7561	Msa1358360:three_prime_UTR	40.0%
	ACAAACCTCGGGAAATATAG+TGG	+	tig0016232:7550-7569	Msa1358360:intergenic	40.0%
	AATACCTCTTTAGCCTAACC+TGG	+	tig0016232:7672-7691	Msa1358360:intergenic	40.0%
!!	GGTTAGGCTAAAGAGGTATT+TGG	-	tig0016232:7672-7691	Msa1358360:three_prime_UTR	40.0%
!!	AAGAGGTATTTGGAGATGAG+AGG	-	tig0016232:7682-7701	Msa1358360:three_prime_UTR	40.0%
	AAAGCACATAACCTTCTCCA+AGG	+	tig0016232:7721-7740	Msa1358360:intergenic	40.0%
	ATAATGTTCCTGATTGTGCC+AGG	-	tig0016232:7935-7954	Msa1358360:intron	40.0%
!	GGTTTCTTTGCAACGTGTTT+TGG	-	tig0016232:7977-7996	Msa1358360:intron	40.0%
	CCTAGCTTACTTATGCTTCT+GGG	+	tig0016232:8095-8114	Msa1358360:intergenic	40.0%
	ACCTAGCTTACTTATGCTTC+TGG	+	tig0016232:8096-8115	Msa1358360:intergenic	40.0%
	CCCTTCATGCAAAATCCATT+TGG	-	tig0016232:8195-8214	Msa1358360:intron	40.0%
!!	CCCAAATGGATTTTGCATGA+AGG	+	tig0016232:8274-8293	Msa1358360:intergenic	40.0%
	GGAGAGATATGTTCCTTCTT+TGG	-	tig0016232:8494-8513	Msa1358360:intron	40.0%
	AGAGAGAGAGAATCCAAAGA+AGG	+	tig0016232:8510-8529	Msa1358360:intergenic	40.0%
	TACGTACGTACGTACATACT+CGG	-	tig0016232:8582-8601	Msa1358360:CDS	40.0%
	TCGAAATGGTGTCTTTAGAC+CGG	+	tig0016232:9040-9059	Msa1358360:intergenic	40.0%
	CTAAAGACACCATTTCGAGA+TGG	-	tig0016232:9042-9061	Msa1358360:intron	40.0%
	TTCAGCAAACCATCTCGAAA+TGG	+	tig0016232:9054-9073	Msa1358360:intergenic	40.0%
	CATGCTCTTAGCAACATTGA+TGG	+	tig0016232:9143-9162	Msa1358360:intergenic	40.0%
	CATCAATGTTGCTAAGAGCA+TGG	-	tig0016232:9141-9160	Msa1358360:intron	40.0%
!	ATGTTGCTAAGAGCATGGAT+TGG	-	tig0016232:9146-9165	Msa1358360:intron	40.0%
	TATGTATCTACAGGATGGCT+TGG	-	tig0016232:9169-9188	Msa1358360:intron	40.0%
	CTTGGAAAGAAGAGGCTTTA+AGG	-	tig0016232:9187-9206	Msa1358360:intron	40.0%
!!	AGAAGAGGCTTTAAGGAATC+GGG	-	tig0016232:9194-9213	Msa1358360:intron	40.0%
	GGAATCGGGATTTCTAAATG+CGG	-	tig0016232:9208-9227	Msa1358360:intron	40.0%
	ATTTCTAAATGCGGTAGCTG+AGG	-	tig0016232:9217-9236	Msa1358360:intron	40.0%
	CTGAAGCATGGCACAAAAAA+TGG	+	tig0016232:9296-9315	Msa1358360:intergenic	40.0%
!	TTTTTGTGCCATGCTTCAGA+TGG	-	tig0016232:9297-9316	Msa1358360:intron	40.0%
!!!	TTGGCCCTTGTTTTAGTTAG+AGG	-	tig0016232:9369-9388	Msa1358360:intron	40.0%
	CTTGCACCTTCATAAACTTG+TGG	-	tig0016232:9861-9880	Msa1358360:intron	40.0%
	TTCTTTCACATTTCTGTGGG+AGG	-	tig0016232:10089-10108	Msa1358360:CDS	40.0%
	ACACACGATTCTACCCAAAA+AGG	+	tig0016232:10131-10150	Msa1358360:intergenic	40.0%
	AAACTCTGGCTATATAGTCC+TGG	-	tig0016232:10152-10171	Msa1358360:intron	40.0%
	GGAAAGCTTCCTTGTATTCC+TGG	-	tig0016232:7486-7505	Msa1358360:three_prime_UTR	45.0%
	TTAAGGGTCGGTAATTCACC+AGG	+	tig0016232:7507-7526	Msa1358360:intergenic	45.0%
	CTTTCCAGGTTAGGCTAAAG+AGG	-	tig0016232:7665-7684	Msa1358360:three_prime_UTR	45.0%
	CACAAACTCACCCAAAATGC+TGG	+	tig0016232:7745-7764	Msa1358360:intergenic	45.0%
	CATCGTACAATATCCCTACC+TGG	+	tig0016232:7956-7975	Msa1358360:intergenic	45.0%
	GGTAGGGATATTGTACGATG+AGG	-	tig0016232:7956-7975	Msa1358360:intron	45.0%
!	CCCAGAAGCATAAGTAAGCT+AGG	-	tig0016232:8092-8111	Msa1358360:intron	45.0%
	GCCCATGCTTCAAGTAGAAA+TGG	+	tig0016232:8213-8232	Msa1358360:intergenic	45.0%
	ATCCATTTGGGCTTGAAGCA+TGG	-	tig0016232:8283-8302	Msa1358360:intron	45.0%
	TCCATTTGGGCTTGAAGCAT+GGG	-	tig0016232:8284-8303	Msa1358360:intron	45.0%
	AGGAACATATCTCTCCATCC+AGG	+	tig0016232:8490-8509	Msa1358360:intergenic	45.0%
	TGGTGTCTTTAGACCGGTTA+CGG	+	tig0016232:9034-9053	Msa1358360:intergenic	45.0%
!	AAATAGGGCCATCTGAAGCA+TGG	+	tig0016232:9308-9327	Msa1358360:intergenic	45.0%
	CTTCAGATGGCCCTATTTCA+TGG	-	tig0016232:9310-9329	Msa1358360:intron	45.0%
	ATGAGAGAGCAGCAGAACAT+TGG	+	tig0016232:9413-9432	Msa1358360:intergenic	45.0%
	AATTCCAAAAGCCTCTCAGC+TGG	+	tig0016232:9990-10009	Msa1358360:intergenic	45.0%
	CACGATTCTACCCAAAAAGG+TGG	+	tig0016232:10128-10147	Msa1358360:intergenic	45.0%
	ATCTCACAAGAGAGATAGCC+AGG	+	tig0016232:10173-10192	Msa1358360:intergenic	45.0%
!!!	TTTTTTTTAAAAAAAAAACA+AGG	+	tig0016232:8812-8831	Msa1358360:intergenic	5.0%
!!!	TTTTTTTAAAAAAAAAGTTT+TGG	-	tig0016232:8817-8836	Msa1358360:intron	5.0%
!!!	TTTTTTAAAAAAAAAGTTTT+GGG	-	tig0016232:8818-8837	Msa1358360:intron	5.0%
!!	TTGGAGATGAGAGGTGCTGA+TGG	-	tig0016232:7691-7710	Msa1358360:three_prime_UTR	50.0%
!!	AGATGAGAGGTGCTGATGGA+GGG	-	tig0016232:7695-7714	Msa1358360:three_prime_UTR	50.0%
	TGTTCCTGATTGTGCCAGGT+AGG	-	tig0016232:7939-7958	Msa1358360:intron	50.0%
	GTTCCTGATTGTGCCAGGTA+GGG	-	tig0016232:7940-7959	Msa1358360:intron	50.0%
	TATCCCTACCTGGCACAATC+AGG	+	tig0016232:7946-7965	Msa1358360:intergenic	50.0%
	ACTGATAACCGGAGTCTCTC+TGG	-	tig0016232:9001-9020	Msa1358360:intron	50.0%
	GCTGAAGCATGTTGCTGAAG+AGG	-	tig0016232:9068-9087	Msa1358360:intron	50.0%
!!	TGCTGAAGAGGTTCTAGAGC+TGG	-	tig0016232:9080-9099	Msa1358360:intron	50.0%
!!	AGAGGTTCTAGAGCTGGCAA+AGG	-	tig0016232:9086-9105	Msa1358360:intron	50.0%
!	CAGGATGGCTTGGAAAGAAG+AGG	-	tig0016232:9179-9198	Msa1358360:intron	50.0%
	TCTAAATGCGGTAGCTGAGG+TGG	-	tig0016232:9220-9239	Msa1358360:intron	50.0%
	GTAGCTGAGGTGGTTAGAAC+AGG	-	tig0016232:9230-9249	Msa1358360:intron	50.0%
!!	GAGATGAGAGGTGCTGATGG+AGG	-	tig0016232:7694-7713	Msa1358360:three_prime_UTR	55.0%
	GCCCATGCTTCAAGCCCAAA+TGG	+	tig0016232:8288-8307	Msa1358360:intergenic	55.0%
	ATAACCGGAGTCTCTCTGGC+AGG	-	tig0016232:9005-9024	Msa1358360:intron	55.0%
!	CACTCCAGCTGAGAGGCTTT+TGG	-	tig0016232:9983-10002	Msa1358360:intron	55.0%
	CTGATGGAGGGCCTTGGAGA+AGG	-	tig0016232:7707-7726	Msa1358360:three_prime_UTR	60.0%
	TCACTCACACGCACGCACGT+AGG	-	tig0016232:8559-8578	Msa1358360:intron	60.0%
	GTGACCTGCCAGAGAGACTC+CGG	+	tig0016232:9012-9031	Msa1358360:intergenic	60.0%
	CTCTGGCAGGTCACCGTAAC+CGG	-	tig0016232:9018-9037	Msa1358360:intron	60.0%
!!	CAGGTGTCACTCCAGCTGAG+AGG	-	tig0016232:9976-9995	Msa1358360:intron	60.0%
!!	GAGGTGCTGATGGAGGGCCT+TGG	-	tig0016232:7701-7720	Msa1358360:three_prime_UTR	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0016232	gene	7474	10351	7474	ID=Msa1358360;Name=Msa1358360
tig0016232	mRNA	7474	10351	7474	ID=Msa1358360-mRNA-1;Parent=Msa1358360;Name=Msa1358360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|1\|1\|1\|1\|6\|284\|167
tig0016232	exon	7474	7846	7474	ID=Msa1358360-mRNA-1:exon:10845;Parent=Msa1358360-mRNA-1
tig0016232	exon	8574	8643	8574	ID=Msa1358360-mRNA-1:exon:10844;Parent=Msa1358360-mRNA-1
tig0016232	exon	8718	8798	8718	ID=Msa1358360-mRNA-1:exon:10843;Parent=Msa1358360-mRNA-1
tig0016232	exon	9776	9868	9776	ID=Msa1358360-mRNA-1:exon:10842;Parent=Msa1358360-mRNA-1
tig0016232	exon	10072	10152	10072	ID=Msa1358360-mRNA-1:exon:10841;Parent=Msa1358360-mRNA-1
tig0016232	exon	10262	10351	10262	ID=Msa1358360-mRNA-1:exon:10840;Parent=Msa1358360-mRNA-1
tig0016232	CDS	10262	10351	10262	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	CDS	10072	10152	10072	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	CDS	9776	9868	9776	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	CDS	8718	8798	8718	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	CDS	8574	8643	8574	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	CDS	7758	7846	7758	ID=Msa1358360-mRNA-1:cds;Parent=Msa1358360-mRNA-1
tig0016232	three_prime_UTR	7474	7757	7474	ID=Msa1358360-mRNA-1:three_prime_utr;Parent=Msa1358360-mRNA-1

Gene Sequence

>Msa1358360

GACTTCTTGGCAGGAAAGCTTCCTTGTATTCCTGGTGAATTACCGACCCTTAATGATTGGGAGAATCATTTGACCACTATATTTCCCGAGGTTAGGCTAAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGGTTATGTGCTTTACCAGCATTTTGGGTAGGGATATTGTACGATGAGGTTTCTTTGCAACGTGTTTTGGATATGACAGCAGATTGGACTTTAGAAGAAAGAGAAATGCTAAGGAATAAGGTCACCGTAACCGGTCTAAAGACACCATTTCGAGATGGTTTGCTGAAGCATGTTGCTGAAGAGGTTCTAGAGCTGGCAAAGGATGGCTTGGAAAGAAGAGGCTTTAAGGAATCGGGATTTCTAAATGCGGTAGCTGAGGTGGTTAGAACAGGTGTCACTCCAGCTGAGAGGCTTTTGGAATTGTATCATGGAAAGTGGGAGCAATCTGTAGATCATGTATTTGACGAATTGCTATACTAA

Protein sequence

>Msa1358360

DFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEVSLQRVLDMTADWTLEEREMLRNKVTVTGLKTPFRDGLLKHVAEEVLELAKDGLERRGFKESGFLNAVAEVVRTGVTPAERLLELYHGKWEQSVDHVFDELLY*