Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017630 | RHN48055.1 | 95.597 | 159 | 6 | 1 | 12 | 169 | 651 | 809 | 1.28e-98 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017630 | sp|Q9Y4C8|RBM19_HUMAN | 40.994 | 161 | 78 | 5 | 8 | 160 | 790 | 941 | 2.86e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017630 | A0A396HA09 | 95.597 | 159 | 6 | 1 | 12 | 169 | 651 | 809 | 6.09e-99 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003780 | Msa1017630 | 0.808140 | 3.585568e-50 | -8.615850e-47 |
| Msa0004860 | Msa1017630 | 0.806377 | 8.474120e-50 | -8.615850e-47 |
| Msa0004920 | Msa1017630 | 0.804986 | 1.660230e-49 | -8.615850e-47 |
| Msa0009430 | Msa1017630 | 0.834829 | 2.390407e-56 | -8.615850e-47 |
| Msa0015610 | Msa1017630 | 0.816086 | 6.630335e-52 | -8.615850e-47 |
| Msa0020930 | Msa1017630 | 0.832522 | 9.010008e-56 | -8.615850e-47 |
| Msa0032090 | Msa1017630 | 0.825175 | 5.409191e-54 | -8.615850e-47 |
| Msa0032430 | Msa1017630 | 0.810458 | 1.141069e-50 | -8.615850e-47 |
| Msa0040690 | Msa1017630 | 0.800100 | 1.688652e-48 | -8.615850e-47 |
| Msa0068680 | Msa1017630 | 0.813513 | 2.464092e-51 | -8.615850e-47 |
| Msa0073480 | Msa1017630 | 0.806697 | 7.252014e-50 | -8.615850e-47 |
| Msa0074700 | Msa1017630 | 0.801429 | 9.043954e-49 | -8.615850e-47 |
| Msa0079380 | Msa1017630 | 0.819101 | 1.386188e-52 | -8.615850e-47 |
| Msa0090360 | Msa1017630 | 0.818659 | 1.746874e-52 | -8.615850e-47 |
| Msa0109690 | Msa1017630 | 0.801205 | 1.004907e-48 | -8.615850e-47 |
| Msa0114060 | Msa1017630 | 0.818961 | 1.491449e-52 | -8.615850e-47 |
| Msa0119960 | Msa1017630 | 0.804991 | 1.655791e-49 | -8.615850e-47 |
| Msa0607050 | Msa1017630 | 0.823487 | 1.349042e-53 | -8.615850e-47 |
| Msa0623790 | Msa1017630 | 0.825644 | 4.188140e-54 | -8.615850e-47 |
| Msa0643180 | Msa1017630 | 0.811938 | 5.449627e-51 | -8.615850e-47 |
| Msa0643560 | Msa1017630 | 0.824476 | 7.906371e-54 | -8.615850e-47 |
| Msa0647500 | Msa1017630 | 0.817668 | 2.927136e-52 | -8.615850e-47 |
| Msa0661190 | Msa1017630 | -0.807266 | 5.496829e-50 | -8.615850e-47 |
| Msa0682840 | Msa1017630 | 0.808766 | 2.635468e-50 | -8.615850e-47 |
| Msa0690150 | Msa1017630 | 0.820738 | 5.853534e-53 | -8.615850e-47 |
| Msa0709400 | Msa1017630 | 0.817948 | 2.529844e-52 | -8.615850e-47 |
| Msa0711780 | Msa1017630 | 0.807487 | 4.934520e-50 | -8.615850e-47 |
| Msa0744000 | Msa1017630 | 0.812540 | 4.028325e-51 | -8.615850e-47 |
| Msa0788850 | Msa1017630 | 0.823774 | 1.155532e-53 | -8.615850e-47 |
| Msa0794670 | Msa1017630 | 0.821043 | 4.979568e-53 | -8.615850e-47 |
| Msa0796700 | Msa1017630 | 0.817780 | 2.761090e-52 | -8.615850e-47 |
| Msa0808270 | Msa1017630 | 0.818180 | 2.242336e-52 | -8.615850e-47 |
| Msa0136070 | Msa1017630 | 0.812718 | 3.682419e-51 | -8.615850e-47 |
| Msa0136100 | Msa1017630 | 0.805659 | 1.199639e-49 | -8.615850e-47 |
| Msa0137840 | Msa1017630 | 0.820971 | 5.173449e-53 | -8.615850e-47 |
| Msa0150300 | Msa1017630 | 0.845864 | 3.113369e-59 | -8.615850e-47 |
| Msa0159930 | Msa1017630 | 0.822723 | 2.033422e-53 | -8.615850e-47 |
| Msa0168720 | Msa1017630 | 0.822735 | 2.020681e-53 | -8.615850e-47 |
| Msa0172070 | Msa1017630 | 0.814732 | 1.326436e-51 | -8.615850e-47 |
| Msa0184040 | Msa1017630 | 0.818522 | 1.876102e-52 | -8.615850e-47 |
| Msa0184780 | Msa1017630 | 0.833997 | 3.865367e-56 | -8.615850e-47 |
| Msa0189320 | Msa1017630 | 0.845095 | 5.029590e-59 | -8.615850e-47 |
| Msa0376300 | Msa1017630 | 0.817057 | 4.016580e-52 | -8.615850e-47 |
| Msa0376310 | Msa1017630 | 0.812276 | 4.600070e-51 | -8.615850e-47 |
| Msa0383800 | Msa1017630 | 0.800308 | 1.531562e-48 | -8.615850e-47 |
| Msa0385580 | Msa1017630 | 0.816032 | 6.816295e-52 | -8.615850e-47 |
| Msa0398670 | Msa1017630 | 0.800940 | 1.138493e-48 | -8.615850e-47 |
| Msa0470690 | Msa1017630 | 0.814000 | 1.925099e-51 | -8.615850e-47 |
| Msa0477080 | Msa1017630 | 0.811537 | 6.662625e-51 | -8.615850e-47 |
| Msa0479170 | Msa1017630 | 0.815827 | 7.571110e-52 | -8.615850e-47 |
| Msa0479970 | Msa1017630 | 0.816946 | 4.253545e-52 | -8.615850e-47 |
| Msa0993290 | Msa1017630 | 0.801546 | 8.556050e-49 | -8.615850e-47 |
| Msa1017630 | Msa1043690 | 0.803805 | 2.926018e-49 | -8.615850e-47 |
| Msa1017630 | Msa1081980 | 0.843255 | 1.568386e-58 | -8.615850e-47 |
| Msa1017630 | Msa1104140 | 0.802601 | 5.192007e-49 | -8.615850e-47 |
| Msa1017630 | Msa1117170 | 0.807486 | 4.937557e-50 | -8.615850e-47 |
| Msa1017630 | Msa1121440 | 0.838148 | 3.414915e-57 | -8.615850e-47 |
| Msa1017630 | Msa1124960 | 0.815359 | 9.627097e-52 | -8.615850e-47 |
| Msa1017630 | Msa1127890 | 0.801474 | 8.854045e-49 | -8.615850e-47 |
| Msa1017630 | Msa1128060 | 0.801163 | 1.024779e-48 | -8.615850e-47 |
| Msa1017630 | Msa1147280 | 0.822498 | 2.294479e-53 | -8.615850e-47 |
| Msa1017630 | Msa1165920 | 0.815223 | 1.032121e-51 | -8.615850e-47 |
| Msa1017630 | Msa1170410 | 0.835884 | 1.294173e-56 | -8.615850e-47 |
| Msa1017630 | Msa1244600 | 0.804687 | 1.916530e-49 | -8.615850e-47 |
| Msa1017630 | Msa1267430 | 0.811915 | 5.513687e-51 | -8.615850e-47 |
| Msa1017630 | Msa1279400 | 0.802356 | 5.833733e-49 | -8.615850e-47 |
| Msa1017630 | Msa1294120 | 0.830627 | 2.640030e-55 | -8.615850e-47 |
| Msa1017630 | Msa1296760 | 0.809317 | 2.009133e-50 | -8.615850e-47 |
| Msa1017630 | Msa1351890 | 0.814410 | 1.562374e-51 | -8.615850e-47 |
| Msa1017630 | Msa1353980 | 0.800156 | 1.644914e-48 | -8.615850e-47 |
| Msa1017630 | Msa1358360 | 0.802757 | 4.821573e-49 | -8.615850e-47 |
| Msa1017630 | Msa1374120 | 0.826855 | 2.157135e-54 | -8.615850e-47 |
| Msa1017630 | Msa1375560 | 0.840769 | 7.121063e-58 | -8.615850e-47 |
| Msa1017630 | Msa1389510 | 0.817563 | 3.090723e-52 | -8.615850e-47 |
| Msa1017630 | Msa1391410 | 0.853505 | 2.286590e-61 | -8.615850e-47 |
| Msa1017630 | Msa1426030 | 0.847076 | 1.453790e-59 | -8.615850e-47 |
| Msa1017630 | Msa1432420 | 0.823806 | 1.136141e-53 | -8.615850e-47 |
| Msa1017630 | Msa1433390 | 0.820141 | 8.023105e-53 | -8.615850e-47 |
| Msa1017630 | Msa1435890 | 0.813884 | 2.041737e-51 | -8.615850e-47 |
| Msa1017630 | Msa1452240 | 0.805400 | 1.359639e-49 | -8.615850e-47 |
| Msa1017630 | Msa1460050 | 0.803418 | 3.519549e-49 | -8.615850e-47 |
| Msa1017630 | Msa1464810 | 0.815470 | 9.095793e-52 | -8.615850e-47 |
| Msa0241390 | Msa1017630 | 0.818836 | 1.591828e-52 | -8.615850e-47 |
| Msa0244810 | Msa1017630 | 0.816042 | 6.779600e-52 | -8.615850e-47 |
| Msa0260680 | Msa1017630 | 0.837172 | 6.079298e-57 | -8.615850e-47 |
| Msa0271510 | Msa1017630 | 0.802062 | 6.704085e-49 | -8.615850e-47 |
| Msa0280090 | Msa1017630 | 0.825175 | 5.409915e-54 | -8.615850e-47 |
| Msa0309770 | Msa1017630 | 0.847137 | 1.398260e-59 | -8.615850e-47 |
| Msa0345970 | Msa1017630 | 0.810833 | 9.469433e-51 | -8.615850e-47 |
| Msa0510350 | Msa1017630 | 0.823400 | 1.413365e-53 | -8.615850e-47 |
| Msa0548240 | Msa1017630 | 0.812260 | 4.636611e-51 | -8.615850e-47 |
| Msa0553050 | Msa1017630 | 0.806866 | 6.680746e-50 | -8.615850e-47 |
| Msa0596800 | Msa1017630 | 0.805644 | 1.208445e-49 | -8.615850e-47 |
| Msa0847770 | Msa1017630 | 0.810376 | 1.188466e-50 | -8.615850e-47 |
| Msa0864300 | Msa1017630 | 0.814044 | 1.882477e-51 | -8.615850e-47 |
| Msa0869860 | Msa1017630 | 0.801899 | 7.241023e-49 | -8.615850e-47 |
| Msa0880020 | Msa1017630 | 0.802013 | 6.861789e-49 | -8.615850e-47 |
| Msa0888580 | Msa1017630 | 0.807920 | 3.993347e-50 | -8.615850e-47 |
| Msa0895120 | Msa1017630 | 0.809856 | 1.538428e-50 | -8.615850e-47 |
| Msa0945970 | Msa1017630 | 0.819336 | 1.225002e-52 | -8.615850e-47 |
| Msa0968590 | Msa1017630 | 0.827135 | 1.848686e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017630 | MtrunA17_Chr7g0259641 | 95.597 | 159 | 6 | 1 | 12 | 169 | 651 | 809 | 1.17e-102 | 312 |
| Msa1017630 | MtrunA17_Chr7g0260761 | 91.139 | 158 | 14 | 0 | 12 | 169 | 651 | 808 | 1.04e-96 | 296 |
| Msa1017630 | MtrunA17_Chr7g0259651 | 85.897 | 78 | 11 | 0 | 79 | 156 | 1 | 78 | 1.11e-42 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1017630 | AT4G19610.1 | 56.579 | 152 | 60 | 2 | 12 | 162 | 668 | 814 | 6.23e-49 | 169 |
| Msa1017630 | AT5G05720.1 | 42.568 | 148 | 68 | 3 | 13 | 158 | 318 | 450 | 2.70e-24 | 98.2 |
| Msa1017630 | AT5G08695.1 | 54.839 | 62 | 28 | 0 | 12 | 73 | 600 | 661 | 1.15e-12 | 65.5 |
| Msa1017630 | AT3G46020.1 | 39.326 | 89 | 49 | 2 | 45 | 131 | 6 | 91 | 1.11e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTATTCGCCACACTTAAA+AGG | 0.169745 | 7_1:+36896304 | Msa1017630:three_prime_UTR |
| AGCGAAAGAAGGTGAGAGTT+TGG | 0.239679 | 7_1:+36895989 | Msa1017630:CDS |
| AAAAGATGAAGTAAAGTTAT+AGG | 0.246416 | 7_1:+36896276 | Msa1017630:three_prime_UTR |
| CTGCATATATCCCGAAGTTC+AGG | 0.301428 | 7_1:+36896168 | Msa1017630:three_prime_UTR |
| TTGGGTACAGGGGACTGTTT+TGG | 0.302761 | 7_1:+36895405 | Msa1017630:CDS |
| TTCTTTAATCTGTGTGCAAT+TGG | 0.304294 | 7_1:-36896349 | None:intergenic |
| TTAAGATTACCAATGAAGTT+TGG | 0.311438 | 7_1:+36895721 | Msa1017630:CDS |
| TTGTACTTTACCATCATTCT+TGG | 0.318291 | 7_1:-36895461 | None:intergenic |
| CTATGATTTCCAAACTTCAT+TGG | 0.343552 | 7_1:-36895730 | None:intergenic |
| AATTGCCATCCCTGAACTTC+GGG | 0.356046 | 7_1:-36896178 | None:intergenic |
| AGACAATTATTTAGCCCGTT+TGG | 0.399385 | 7_1:+36895562 | Msa1017630:CDS |
| AAAATTATCACCTGGCCAAA+CGG | 0.428677 | 7_1:-36895577 | None:intergenic |
| ATTATTTAGCCCGTTTGGCC+AGG | 0.451785 | 7_1:+36895567 | Msa1017630:CDS |
| ATTATTCGCCACACTTAAAA+GGG | 0.453648 | 7_1:+36896305 | Msa1017630:three_prime_UTR |
| GCTCAATTTAATGAACATAG+TGG | 0.467944 | 7_1:+36896035 | Msa1017630:CDS |
| AAATTATCACCTGGCCAAAC+GGG | 0.474929 | 7_1:-36895576 | None:intergenic |
| GTGCTTCGTTCAAGAATTTG+AGG | 0.479923 | 7_1:+36896142 | Msa1017630:exon |
| CTCTCAAGTACCCACTTGTA+TGG | 0.480999 | 7_1:+36895811 | Msa1017630:CDS |
| AGACTAACTTATCTAAGAAA+AGG | 0.482100 | 7_1:+36896066 | Msa1017630:CDS |
| TGTGGAGTATGTTACTCAGC+AGG | 0.483709 | 7_1:+36895765 | Msa1017630:CDS |
| CCACTTGTATGGCAGACATC+TGG | 0.484106 | 7_1:+36895822 | Msa1017630:CDS |
| CTCTGTCATGCCAAGAATGA+TGG | 0.499370 | 7_1:+36895451 | Msa1017630:CDS |
| AAGGAAATATGAAGTTTGAA+AGG | 0.501537 | 7_1:+36896111 | Msa1017630:CDS |
| TGCATATATCCCGAAGTTCA+GGG | 0.509453 | 7_1:+36896169 | Msa1017630:three_prime_UTR |
| ATGAAGTTTGGAAATCATAG+AGG | 0.511722 | 7_1:+36895733 | Msa1017630:CDS |
| AAGGGTAATGAATTGAGTAA+AGG | 0.527975 | 7_1:+36896323 | Msa1017630:three_prime_UTR |
| TGAGAGTTTGGAGGAACTGC+GGG | 0.532391 | 7_1:+36896001 | Msa1017630:CDS |
| AAATTGCCATCCCTGAACTT+CGG | 0.536549 | 7_1:-36896179 | None:intergenic |
| GTGATAGAGAGAGCGAAAGA+AGG | 0.537016 | 7_1:+36895978 | Msa1017630:CDS |
| GCCATCAGTATGTTAGATGA+AGG | 0.538296 | 7_1:+36896092 | Msa1017630:CDS |
| TTGTTTAATTTGTCGCTGCT+TGG | 0.548116 | 7_1:+36896218 | Msa1017630:three_prime_UTR |
| TCCTTCATCTAACATACTGA+TGG | 0.552737 | 7_1:-36896093 | None:intergenic |
| GGAGGCACAAAATGCACTTA+CGG | 0.571985 | 7_1:+36895786 | Msa1017630:CDS |
| GAAAGAAGGTGAGAGTTTGG+AGG | 0.583196 | 7_1:+36895992 | Msa1017630:CDS |
| CCAGATGTCTGCCATACAAG+TGG | 0.588396 | 7_1:-36895822 | None:intergenic |
| TAACTTATCTAAGAAAAGGA+AGG | 0.595740 | 7_1:+36896070 | Msa1017630:CDS |
| GTGAGAGTTTGGAGGAACTG+CGG | 0.633716 | 7_1:+36896000 | Msa1017630:CDS |
| TATATCCCGAAGTTCAGGGA+TGG | 0.656846 | 7_1:+36896173 | Msa1017630:three_prime_UTR |
| CAGATGTCTGCCATACAAGT+GGG | 0.667301 | 7_1:-36895821 | None:intergenic |
| GGAGTATGTTACTCAGCAGG+AGG | 0.710455 | 7_1:+36895768 | Msa1017630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATTTTTTAATAATTGTTT+TGG | + | chr7_1:36895381-36895400 | Msa1017630:CDS | 15.0% |
| !!! | TTTTAATAATTGTTTTGGTT+TGG | + | chr7_1:36895386-36895405 | Msa1017630:CDS | 15.0% |
| !!! | TTTAATAATTGTTTTGGTTT+GGG | + | chr7_1:36895387-36895406 | Msa1017630:CDS | 15.0% |
| !!! | GCATTTTTTAATAATTGTTT+TGG | + | chr7_1:36895381-36895400 | Msa1017630:CDS | 15.0% |
| !!! | TTTTAATAATTGTTTTGGTT+TGG | + | chr7_1:36895386-36895405 | Msa1017630:CDS | 15.0% |
| !!! | TTTAATAATTGTTTTGGTTT+GGG | + | chr7_1:36895387-36895406 | Msa1017630:CDS | 15.0% |
| !!! | TTTACTTCATCTTTTAAACA+TGG | - | chr7_1:36896271-36896290 | None:intergenic | 20.0% |
| !! | AAAAGATGAAGTAAAGTTAT+AGG | + | chr7_1:36896276-36896295 | Msa1017630:three_prime_UTR | 20.0% |
| !! | CAATTATTAAAAAATGCCTA+TGG | - | chr7_1:36895378-36895397 | None:intergenic | 20.0% |
| !!! | TTTACTTCATCTTTTAAACA+TGG | - | chr7_1:36896271-36896290 | None:intergenic | 20.0% |
| !! | AAAAGATGAAGTAAAGTTAT+AGG | + | chr7_1:36896276-36896295 | Msa1017630:three_prime_UTR | 20.0% |
| ! | ATTGTAGTAAAATTATCACC+TGG | - | chr7_1:36895588-36895607 | None:intergenic | 25.0% |
| !! | TCTTAAACTTTTAATCTGCA+CGG | - | chr7_1:36895707-36895726 | None:intergenic | 25.0% |
| ! | TTAAGATTACCAATGAAGTT+TGG | + | chr7_1:36895721-36895740 | Msa1017630:CDS | 25.0% |
| ! | ATATACACTACCTAAAACAA+GGG | - | chr7_1:36895904-36895923 | None:intergenic | 25.0% |
| ! | TATATACACTACCTAAAACA+AGG | - | chr7_1:36895905-36895924 | None:intergenic | 25.0% |
| ! | TGCAAATAGTTGAAAAACAA+TGG | + | chr7_1:36895939-36895958 | Msa1017630:intron | 25.0% |
| ! | GCAAATAGTTGAAAAACAAT+GGG | + | chr7_1:36895940-36895959 | Msa1017630:intron | 25.0% |
| ! | TCTATCACCTGAAAATAATA+CGG | - | chr7_1:36895966-36895985 | None:intergenic | 25.0% |
| ! | AGACTAACTTATCTAAGAAA+AGG | + | chr7_1:36896066-36896085 | Msa1017630:CDS | 25.0% |
| ! | TAACTTATCTAAGAAAAGGA+AGG | + | chr7_1:36896070-36896089 | Msa1017630:CDS | 25.0% |
| ! | AAGGAAATATGAAGTTTGAA+AGG | + | chr7_1:36896111-36896130 | Msa1017630:CDS | 25.0% |
| ! | ATTGTAGTAAAATTATCACC+TGG | - | chr7_1:36895588-36895607 | None:intergenic | 25.0% |
| !! | TCTTAAACTTTTAATCTGCA+CGG | - | chr7_1:36895707-36895726 | None:intergenic | 25.0% |
| ! | TTAAGATTACCAATGAAGTT+TGG | + | chr7_1:36895721-36895740 | Msa1017630:CDS | 25.0% |
| ! | ATATACACTACCTAAAACAA+GGG | - | chr7_1:36895904-36895923 | None:intergenic | 25.0% |
| ! | TATATACACTACCTAAAACA+AGG | - | chr7_1:36895905-36895924 | None:intergenic | 25.0% |
| ! | TGCAAATAGTTGAAAAACAA+TGG | + | chr7_1:36895939-36895958 | Msa1017630:intron | 25.0% |
| ! | GCAAATAGTTGAAAAACAAT+GGG | + | chr7_1:36895940-36895959 | Msa1017630:intron | 25.0% |
| ! | TCTATCACCTGAAAATAATA+CGG | - | chr7_1:36895966-36895985 | None:intergenic | 25.0% |
| ! | AGACTAACTTATCTAAGAAA+AGG | + | chr7_1:36896066-36896085 | Msa1017630:CDS | 25.0% |
| ! | TAACTTATCTAAGAAAAGGA+AGG | + | chr7_1:36896070-36896089 | Msa1017630:CDS | 25.0% |
| ! | AAGGAAATATGAAGTTTGAA+AGG | + | chr7_1:36896111-36896130 | Msa1017630:CDS | 25.0% |
| TTGTACTTTACCATCATTCT+TGG | - | chr7_1:36895464-36895483 | None:intergenic | 30.0% | |
| ! | CTTAAACTTTTAATCTGCAC+GGG | - | chr7_1:36895706-36895725 | None:intergenic | 30.0% |
| CTATGATTTCCAAACTTCAT+TGG | - | chr7_1:36895733-36895752 | None:intergenic | 30.0% | |
| ATGAAGTTTGGAAATCATAG+AGG | + | chr7_1:36895733-36895752 | Msa1017630:CDS | 30.0% | |
| TATACACTACCTAAAACAAG+GGG | - | chr7_1:36895903-36895922 | None:intergenic | 30.0% | |
| GCTCAATTTAATGAACATAG+TGG | + | chr7_1:36896035-36896054 | Msa1017630:CDS | 30.0% | |
| ATTATTCGCCACACTTAAAA+GGG | + | chr7_1:36896305-36896324 | Msa1017630:three_prime_UTR | 30.0% | |
| !! | ATTCATTACCCTTTTAAGTG+TGG | - | chr7_1:36896316-36896335 | None:intergenic | 30.0% |
| AAGGGTAATGAATTGAGTAA+AGG | + | chr7_1:36896323-36896342 | Msa1017630:three_prime_UTR | 30.0% | |
| TTCTTTAATCTGTGTGCAAT+TGG | - | chr7_1:36896352-36896371 | None:intergenic | 30.0% | |
| TTGTACTTTACCATCATTCT+TGG | - | chr7_1:36895464-36895483 | None:intergenic | 30.0% | |
| ! | CTTAAACTTTTAATCTGCAC+GGG | - | chr7_1:36895706-36895725 | None:intergenic | 30.0% |
| CTATGATTTCCAAACTTCAT+TGG | - | chr7_1:36895733-36895752 | None:intergenic | 30.0% | |
| ATGAAGTTTGGAAATCATAG+AGG | + | chr7_1:36895733-36895752 | Msa1017630:CDS | 30.0% | |
| TATACACTACCTAAAACAAG+GGG | - | chr7_1:36895903-36895922 | None:intergenic | 30.0% | |
| GCTCAATTTAATGAACATAG+TGG | + | chr7_1:36896035-36896054 | Msa1017630:CDS | 30.0% | |
| ATTATTCGCCACACTTAAAA+GGG | + | chr7_1:36896305-36896324 | Msa1017630:three_prime_UTR | 30.0% | |
| !! | ATTCATTACCCTTTTAAGTG+TGG | - | chr7_1:36896316-36896335 | None:intergenic | 30.0% |
| AAGGGTAATGAATTGAGTAA+AGG | + | chr7_1:36896323-36896342 | Msa1017630:three_prime_UTR | 30.0% | |
| TTCTTTAATCTGTGTGCAAT+TGG | - | chr7_1:36896352-36896371 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTGGTTTGGGTAC+AGG | + | chr7_1:36895393-36895412 | Msa1017630:CDS | 35.0% |
| !!! | ATTGTTTTGGTTTGGGTACA+GGG | + | chr7_1:36895394-36895413 | Msa1017630:CDS | 35.0% |
| !!! | TGTGAGAAATGTTGCTTTTG+AGG | + | chr7_1:36895522-36895541 | Msa1017630:CDS | 35.0% |
| AGACAATTATTTAGCCCGTT+TGG | + | chr7_1:36895562-36895581 | Msa1017630:CDS | 35.0% | |
| AAAATTATCACCTGGCCAAA+CGG | - | chr7_1:36895580-36895599 | None:intergenic | 35.0% | |
| !! | TCATAGAGGATTTGCTTTTG+TGG | + | chr7_1:36895747-36895766 | Msa1017630:CDS | 35.0% |
| TCCTTCATCTAACATACTGA+TGG | - | chr7_1:36896096-36896115 | None:intergenic | 35.0% | |
| !! | TTGTTTAATTTGTCGCTGCT+TGG | + | chr7_1:36896218-36896237 | Msa1017630:three_prime_UTR | 35.0% |
| CATTATTCGCCACACTTAAA+AGG | + | chr7_1:36896304-36896323 | Msa1017630:three_prime_UTR | 35.0% | |
| !!! | AATTGTTTTGGTTTGGGTAC+AGG | + | chr7_1:36895393-36895412 | Msa1017630:CDS | 35.0% |
| !!! | ATTGTTTTGGTTTGGGTACA+GGG | + | chr7_1:36895394-36895413 | Msa1017630:CDS | 35.0% |
| !!! | TGTGAGAAATGTTGCTTTTG+AGG | + | chr7_1:36895522-36895541 | Msa1017630:CDS | 35.0% |
| AGACAATTATTTAGCCCGTT+TGG | + | chr7_1:36895562-36895581 | Msa1017630:CDS | 35.0% | |
| AAAATTATCACCTGGCCAAA+CGG | - | chr7_1:36895580-36895599 | None:intergenic | 35.0% | |
| !! | TCATAGAGGATTTGCTTTTG+TGG | + | chr7_1:36895747-36895766 | Msa1017630:CDS | 35.0% |
| TCCTTCATCTAACATACTGA+TGG | - | chr7_1:36896096-36896115 | None:intergenic | 35.0% | |
| !! | TTGTTTAATTTGTCGCTGCT+TGG | + | chr7_1:36896218-36896237 | Msa1017630:three_prime_UTR | 35.0% |
| CATTATTCGCCACACTTAAA+AGG | + | chr7_1:36896304-36896323 | Msa1017630:three_prime_UTR | 35.0% | |
| !!! | TTGTTTTGGTTTGGGTACAG+GGG | + | chr7_1:36895395-36895414 | Msa1017630:CDS | 40.0% |
| !!! | AAATGTTGCTTTTGAGGCGA+CGG | + | chr7_1:36895528-36895547 | Msa1017630:CDS | 40.0% |
| AAATTATCACCTGGCCAAAC+GGG | - | chr7_1:36895579-36895598 | None:intergenic | 40.0% | |
| AGTCAGCAAACATGAGTGAA+AGG | - | chr7_1:36895678-36895697 | None:intergenic | 40.0% | |
| !!! | TCTACACTTCCCCTTGTTTT+AGG | + | chr7_1:36895891-36895910 | Msa1017630:intron | 40.0% |
| ! | CAATGGGCCGTATTATTTTC+AGG | + | chr7_1:36895956-36895975 | Msa1017630:intron | 40.0% |
| GCCATCAGTATGTTAGATGA+AGG | + | chr7_1:36896092-36896111 | Msa1017630:CDS | 40.0% | |
| GTGCTTCGTTCAAGAATTTG+AGG | + | chr7_1:36896142-36896161 | Msa1017630:exon | 40.0% | |
| TGCATATATCCCGAAGTTCA+GGG | + | chr7_1:36896169-36896188 | Msa1017630:three_prime_UTR | 40.0% | |
| AAATTGCCATCCCTGAACTT+CGG | - | chr7_1:36896182-36896201 | None:intergenic | 40.0% | |
| !!! | TTGTTTTGGTTTGGGTACAG+GGG | + | chr7_1:36895395-36895414 | Msa1017630:CDS | 40.0% |
| !!! | AAATGTTGCTTTTGAGGCGA+CGG | + | chr7_1:36895528-36895547 | Msa1017630:CDS | 40.0% |
| AAATTATCACCTGGCCAAAC+GGG | - | chr7_1:36895579-36895598 | None:intergenic | 40.0% | |
| AGTCAGCAAACATGAGTGAA+AGG | - | chr7_1:36895678-36895697 | None:intergenic | 40.0% | |
| !!! | TCTACACTTCCCCTTGTTTT+AGG | + | chr7_1:36895891-36895910 | Msa1017630:intron | 40.0% |
| ! | CAATGGGCCGTATTATTTTC+AGG | + | chr7_1:36895956-36895975 | Msa1017630:intron | 40.0% |
| GCCATCAGTATGTTAGATGA+AGG | + | chr7_1:36896092-36896111 | Msa1017630:CDS | 40.0% | |
| GTGCTTCGTTCAAGAATTTG+AGG | + | chr7_1:36896142-36896161 | Msa1017630:exon | 40.0% | |
| TGCATATATCCCGAAGTTCA+GGG | + | chr7_1:36896169-36896188 | Msa1017630:three_prime_UTR | 40.0% | |
| AAATTGCCATCCCTGAACTT+CGG | - | chr7_1:36896182-36896201 | None:intergenic | 40.0% | |
| CTCTGTCATGCCAAGAATGA+TGG | + | chr7_1:36895451-36895470 | Msa1017630:CDS | 45.0% | |
| ATTATTTAGCCCGTTTGGCC+AGG | + | chr7_1:36895567-36895586 | Msa1017630:CDS | 45.0% | |
| TGTGGAGTATGTTACTCAGC+AGG | + | chr7_1:36895765-36895784 | Msa1017630:CDS | 45.0% | |
| ! | GGAGGCACAAAATGCACTTA+CGG | + | chr7_1:36895786-36895805 | Msa1017630:CDS | 45.0% |
| CTCTCAAGTACCCACTTGTA+TGG | + | chr7_1:36895811-36895830 | Msa1017630:CDS | 45.0% | |
| CAGATGTCTGCCATACAAGT+GGG | - | chr7_1:36895824-36895843 | None:intergenic | 45.0% | |
| GACATCTGGTGAGTGAAACT+CGG | + | chr7_1:36895836-36895855 | Msa1017630:intron | 45.0% | |
| GTGATAGAGAGAGCGAAAGA+AGG | + | chr7_1:36895978-36895997 | Msa1017630:CDS | 45.0% | |
| AGCGAAAGAAGGTGAGAGTT+TGG | + | chr7_1:36895989-36896008 | Msa1017630:CDS | 45.0% | |
| GAAAGAAGGTGAGAGTTTGG+AGG | + | chr7_1:36895992-36896011 | Msa1017630:CDS | 45.0% | |
| CTGCATATATCCCGAAGTTC+AGG | + | chr7_1:36896168-36896187 | Msa1017630:three_prime_UTR | 45.0% | |
| TATATCCCGAAGTTCAGGGA+TGG | + | chr7_1:36896173-36896192 | Msa1017630:three_prime_UTR | 45.0% | |
| AATTGCCATCCCTGAACTTC+GGG | - | chr7_1:36896181-36896200 | None:intergenic | 45.0% | |
| CTCTGTCATGCCAAGAATGA+TGG | + | chr7_1:36895451-36895470 | Msa1017630:CDS | 45.0% | |
| ATTATTTAGCCCGTTTGGCC+AGG | + | chr7_1:36895567-36895586 | Msa1017630:CDS | 45.0% | |
| TGTGGAGTATGTTACTCAGC+AGG | + | chr7_1:36895765-36895784 | Msa1017630:CDS | 45.0% | |
| ! | GGAGGCACAAAATGCACTTA+CGG | + | chr7_1:36895786-36895805 | Msa1017630:CDS | 45.0% |
| CTCTCAAGTACCCACTTGTA+TGG | + | chr7_1:36895811-36895830 | Msa1017630:CDS | 45.0% | |
| CAGATGTCTGCCATACAAGT+GGG | - | chr7_1:36895824-36895843 | None:intergenic | 45.0% | |
| GACATCTGGTGAGTGAAACT+CGG | + | chr7_1:36895836-36895855 | Msa1017630:intron | 45.0% | |
| GTGATAGAGAGAGCGAAAGA+AGG | + | chr7_1:36895978-36895997 | Msa1017630:CDS | 45.0% | |
| AGCGAAAGAAGGTGAGAGTT+TGG | + | chr7_1:36895989-36896008 | Msa1017630:CDS | 45.0% | |
| GAAAGAAGGTGAGAGTTTGG+AGG | + | chr7_1:36895992-36896011 | Msa1017630:CDS | 45.0% | |
| CTGCATATATCCCGAAGTTC+AGG | + | chr7_1:36896168-36896187 | Msa1017630:three_prime_UTR | 45.0% | |
| TATATCCCGAAGTTCAGGGA+TGG | + | chr7_1:36896173-36896192 | Msa1017630:three_prime_UTR | 45.0% | |
| AATTGCCATCCCTGAACTTC+GGG | - | chr7_1:36896181-36896200 | None:intergenic | 45.0% | |
| ! | TTGGGTACAGGGGACTGTTT+TGG | + | chr7_1:36895405-36895424 | Msa1017630:CDS | 50.0% |
| !! | GTACAGGGGACTGTTTTGGA+CGG | + | chr7_1:36895409-36895428 | Msa1017630:CDS | 50.0% |
| GGAGTATGTTACTCAGCAGG+AGG | + | chr7_1:36895768-36895787 | Msa1017630:CDS | 50.0% | |
| CCAGATGTCTGCCATACAAG+TGG | - | chr7_1:36895825-36895844 | None:intergenic | 50.0% | |
| CCACTTGTATGGCAGACATC+TGG | + | chr7_1:36895822-36895841 | Msa1017630:CDS | 50.0% | |
| GTGAGAGTTTGGAGGAACTG+CGG | + | chr7_1:36896000-36896019 | Msa1017630:CDS | 50.0% | |
| TGAGAGTTTGGAGGAACTGC+GGG | + | chr7_1:36896001-36896020 | Msa1017630:CDS | 50.0% | |
| ! | TTGGGTACAGGGGACTGTTT+TGG | + | chr7_1:36895405-36895424 | Msa1017630:CDS | 50.0% |
| !! | GTACAGGGGACTGTTTTGGA+CGG | + | chr7_1:36895409-36895428 | Msa1017630:CDS | 50.0% |
| GGAGTATGTTACTCAGCAGG+AGG | + | chr7_1:36895768-36895787 | Msa1017630:CDS | 50.0% | |
| CCAGATGTCTGCCATACAAG+TGG | - | chr7_1:36895825-36895844 | None:intergenic | 50.0% | |
| CCACTTGTATGGCAGACATC+TGG | + | chr7_1:36895822-36895841 | Msa1017630:CDS | 50.0% | |
| GTGAGAGTTTGGAGGAACTG+CGG | + | chr7_1:36896000-36896019 | Msa1017630:CDS | 50.0% | |
| TGAGAGTTTGGAGGAACTGC+GGG | + | chr7_1:36896001-36896020 | Msa1017630:CDS | 50.0% | |
| !!! | TGCTTTTGAGGCGACGGAGA+AGG | + | chr7_1:36895534-36895553 | Msa1017630:CDS | 55.0% |
| !!! | TGCTTTTGAGGCGACGGAGA+AGG | + | chr7_1:36895534-36895553 | Msa1017630:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 36895376 | 36896397 | 36895376 | ID=Msa1017630;Name=Msa1017630 |
| chr7_1 | mRNA | 36895376 | 36896397 | 36895376 | ID=Msa1017630-mRNA-1;Parent=Msa1017630;Name=Msa1017630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|255|169 |
| chr7_1 | exon | 36895376 | 36895588 | 36895376 | ID=Msa1017630-mRNA-1:exon:7021;Parent=Msa1017630-mRNA-1 |
| chr7_1 | exon | 36895712 | 36895843 | 36895712 | ID=Msa1017630-mRNA-1:exon:7022;Parent=Msa1017630-mRNA-1 |
| chr7_1 | exon | 36895978 | 36896397 | 36895978 | ID=Msa1017630-mRNA-1:exon:7023;Parent=Msa1017630-mRNA-1 |
| chr7_1 | CDS | 36895376 | 36895588 | 36895376 | ID=Msa1017630-mRNA-1:cds;Parent=Msa1017630-mRNA-1 |
| chr7_1 | CDS | 36895712 | 36895843 | 36895712 | ID=Msa1017630-mRNA-1:cds;Parent=Msa1017630-mRNA-1 |
| chr7_1 | CDS | 36895978 | 36896142 | 36895978 | ID=Msa1017630-mRNA-1:cds;Parent=Msa1017630-mRNA-1 |
| chr7_1 | three_prime_UTR | 36896143 | 36896397 | 36896143 | ID=Msa1017630-mRNA-1:three_prime_utr;Parent=Msa1017630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
