AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731690 MtrunA17_Chr5g0425781 98.780 410 5 0 10 419 97 506 0.0 821
Msa0731690 MtrunA17_Chr8g0382381 65.187 428 129 3 1 410 89 514 0.0 561
Msa0731690 MtrunA17_Chr8g0382331 62.919 418 139 2 1 406 88 501 0.0 525
Msa0731690 MtrunA17_Chr8g0382321 61.800 411 141 5 1 410 89 484 1.73e-162 466
Msa0731690 MtrunA17_Chr5g0403601 40.267 375 202 5 10 372 130 494 1.83e-78 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731690 AT1G78130.1 74.084 382 92 3 10 387 97 475 0.0 553
Msa0731690 AT5G10190.1 64.925 402 128 3 10 411 97 485 0.0 540
Msa0731690 AT5G10190.3 62.331 369 126 3 43 411 1 356 1.88e-169 479
Msa0731690 AT5G10190.2 66.667 252 80 1 10 261 97 344 1.26e-116 344
Msa0731690 AT4G36790.1 41.953 379 198 6 1 372 125 488 4.83e-91 284
Msa0731690 AT2G18590.1 36.951 387 218 7 2 372 96 472 7.77e-75 241

Find 114 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACAGTTTGATCAATTT+TGG 0.152331 5_1:-42979452 Msa0731690:three_prime_UTR
TGGTTTGATGCTTGTCATTT+TGG 0.163962 5_1:-42980490 Msa0731690:CDS
AGAATTATCCTCCCTGAATT+TGG 0.189354 5_1:+42980600 None:intergenic
TCCAGGCATCTTCCAAATTC+AGG 0.202141 5_1:-42980612 Msa0731690:CDS
GCGATACCAAAGACTGTTAT+TGG 0.248840 5_1:+42981014 None:intergenic
AACAATCGTGGCATGGCTTT+TGG 0.262625 5_1:-42981101 Msa0731690:CDS
ATCTTCGAAATGTGGATCTT+TGG 0.269283 5_1:+42980920 None:intergenic
ATTGTTGCACAGGGTGTTAC+TGG 0.276865 5_1:-42980783 Msa0731690:CDS
GCAGTTTCGCGAGGATTAAA+TGG 0.286919 5_1:-42981185 Msa0731690:CDS
TTTGGATGGCTTCAACTAAC+TGG 0.306249 5_1:-42981083 Msa0731690:CDS
CACCCTGTGCAACAATTATC+TGG 0.310837 5_1:+42980790 None:intergenic
ATTCTCCAACTTAGCTGATT+AGG 0.317353 5_1:-42979541 Msa0731690:exon
ATAGCTCCAATAACAGTCTT+TGG 0.331343 5_1:-42981020 Msa0731690:CDS
TTGAGATGCACTAGATCCTT+TGG 0.331702 5_1:+42979851 None:intergenic
TGGAGTAAGAGATTTGTTTC+AGG 0.338181 5_1:-42980844 Msa0731690:CDS
AGAATTTCATTTCATGTTGT+TGG 0.340210 5_1:-42980984 Msa0731690:CDS
GATGACAATGTAAATTTATA+TGG 0.344686 5_1:-42979293 Msa0731690:three_prime_UTR
GCACTAGATCCTTTGGGAAT+AGG 0.348016 5_1:+42979858 None:intergenic
CGGTTTGTTTGGTGGTAAGA+TGG 0.354936 5_1:-42980646 Msa0731690:CDS
CCAGACCAAAATGTTTCCTT+TGG 0.360236 5_1:+42980864 None:intergenic
ATCAGTAGAGTCTGCAACTA+AGG 0.372153 5_1:+42981127 None:intergenic
AGGAAGCCAAATCGGTTACT+AGG 0.376042 5_1:-42980824 Msa0731690:CDS
CGAAATCCTAGTAACCGATT+TGG 0.378085 5_1:+42980818 None:intergenic
GTTCTATTACAATCCATGTT+TGG 0.379424 5_1:+42979423 None:intergenic
AAAATTTCGTGTTTGCTTAG+TGG 0.384197 5_1:-42979490 Msa0731690:three_prime_UTR
TCGCGAGGATTAAATGGAAT+TGG 0.385071 5_1:-42981179 Msa0731690:CDS
GCAACTAAGGACTGAATTGC+AGG 0.390198 5_1:+42981140 None:intergenic
AAGTCTCTTTACACAGCAAT+AGG 0.390577 5_1:-42979789 Msa0731690:CDS
AAAATGTTTCCTTTGGAACT+TGG 0.393994 5_1:+42980871 None:intergenic
CCAGGCATCTTCCAAATTCA+GGG 0.398791 5_1:-42980611 Msa0731690:CDS
AAGTTCCAAAGGAAACATTT+TGG 0.400153 5_1:-42980869 Msa0731690:CDS
CCATGTGACAATGCTGTAGA+TGG 0.404429 5_1:+42980510 None:intergenic
GTGTTACTGGTTCCTTTCCT+TGG 0.407195 5_1:-42980770 Msa0731690:CDS
AAGAAAATATATTGCTCTAC+AGG 0.410601 5_1:-42979572 Msa0731690:CDS
TGAGATGCACTAGATCCTTT+GGG 0.413888 5_1:+42979852 None:intergenic
AGTTCTGTTGGCGGTTTGTT+TGG 0.415841 5_1:-42980657 Msa0731690:CDS
GGAAATCTCGGTTCAGTTGT+TGG 0.416800 5_1:-42981062 Msa0731690:CDS
TACTGGTTCCTTTCCTTGGT+CGG 0.418609 5_1:-42980766 Msa0731690:CDS
GGATTAATAAGCATTATAGT+TGG 0.436151 5_1:-42980963 Msa0731690:CDS
AGATCCACATTTCGAAGATA+AGG 0.439343 5_1:-42980916 Msa0731690:CDS
CAATGTAAATTTATATGGTC+TGG 0.440457 5_1:-42979288 Msa0731690:three_prime_UTR
CCCTGAATTTGGAAGATGCC+TGG 0.441254 5_1:+42980611 None:intergenic
CTAATGCATACACACTTGTC+CGG 0.443519 5_1:+42979961 None:intergenic
AATGACCTAATCAGCTAAGT+TGG 0.447237 5_1:+42979536 None:intergenic
ACACTTGTCCGGGATCTCTC+TGG 0.448101 5_1:+42979972 None:intergenic
ATAAGTGAAAGATAAAACTA+TGG 0.449330 5_1:+42979369 None:intergenic
AAGTCCGAGGAATTGTCTAT+TGG 0.454075 5_1:-42979630 Msa0731690:CDS
AGATGGGAGATATCCTTTCC+AGG 0.454599 5_1:-42980629 Msa0731690:CDS
TTTCCTCATAGCTTTGTTTG+TGG 0.459951 5_1:-42980685 Msa0731690:CDS
CCGAGAGAATGCTTCATCAT+TGG 0.462160 5_1:-42979814 Msa0731690:CDS
TTTGTTTCAGGAAGCCAAAT+CGG 0.466439 5_1:-42980832 Msa0731690:CDS
TTTCCAGATAATTGTTGCAC+AGG 0.468519 5_1:-42980793 Msa0731690:CDS
GATCCACATTTCGAAGATAA+GGG 0.476377 5_1:-42980915 Msa0731690:CDS
GGGCTCTTTATATCTTGGAA+TGG 0.479081 5_1:-42980468 Msa0731690:CDS
AGATAGTTCCAGAGAGATCC+CGG 0.480678 5_1:-42979980 Msa0731690:CDS
ATAACAGTCTTTGGTATCGC+TGG 0.482588 5_1:-42981011 Msa0731690:CDS
GGTTTGTTTGGTGGTAAGAT+GGG 0.486167 5_1:-42980645 Msa0731690:CDS
ATTAAACAGCATAGAGCCAT+TGG 0.492469 5_1:+42979762 None:intergenic
AATACATACTTATTTGTAGC+AGG 0.492841 5_1:+42980444 None:intergenic
CATTCAAAAGTTTATAGAGA+AGG 0.500746 5_1:-42979517 Msa0731690:three_prime_UTR
GATGGAGGCTTTAATAGAAT+CGG 0.503156 5_1:-42979691 Msa0731690:CDS
CTCTGGATCCGCGATCCCCT+TGG 0.505511 5_1:-42980565 Msa0731690:CDS
ATTCTAGCACAGATAAGCTC+TGG 0.506952 5_1:-42980582 Msa0731690:CDS
TCTTTCTCTGTCTCTCGGAT+AGG 0.515677 5_1:+42979719 None:intergenic
ATTCAAAAGTTTATAGAGAA+GGG 0.517026 5_1:-42979516 Msa0731690:three_prime_UTR
AATGCTGTAGATGGATCATC+TGG 0.517085 5_1:+42980519 None:intergenic
AGACAGAGAAAGAGCTAGGA+TGG 0.519279 5_1:-42979709 Msa0731690:CDS
TCTGTTGGCGGTTTGTTTGG+TGG 0.520282 5_1:-42980654 Msa0731690:CDS
CAGCAAAAGAATCGCTGCCA+AGG 0.521565 5_1:+42980548 None:intergenic
CTAGCTCTTTCTCTGTCTCT+CGG 0.528162 5_1:+42979714 None:intergenic
TTGTCTATTGGAGATTATGA+TGG 0.531968 5_1:-42979618 Msa0731690:CDS
ATGCAGCATATTGAATCAGA+TGG 0.533581 5_1:-42979666 Msa0731690:CDS
TTTGTGGTTGCAAGTTCTGT+TGG 0.534891 5_1:-42980669 Msa0731690:CDS
ATTTCGTGTTTGCTTAGTGG+TGG 0.536496 5_1:-42979487 Msa0731690:three_prime_UTR
CGAGAGACAGAGAAAGAGCT+AGG 0.537790 5_1:-42979713 Msa0731690:CDS
GTGGTTGCAAGTTCTGTTGG+CGG 0.543374 5_1:-42980666 Msa0731690:CDS
AGCAAAAGAATCGCTGCCAA+GGG 0.555323 5_1:+42980549 None:intergenic
ATCTCCAATAGACAATTCCT+CGG 0.558786 5_1:+42979626 None:intergenic
TGAGACAAAATTCCCACTGC+AGG 0.563509 5_1:+42979900 None:intergenic
GCTCTAGCTCAAACCATCGT+TGG 0.571117 5_1:+42981815 None:intergenic
CCAATGATGAAGCATTCTCT+CGG 0.572353 5_1:+42979814 None:intergenic
GACAAAATTCCCACTGCAGG+AGG 0.575397 5_1:+42979903 None:intergenic
CAGTCTTTGGTATCGCTGGT+TGG 0.575840 5_1:-42981007 Msa0731690:CDS
CCGATGTGGTTAGAGCTGAC+TGG 0.580559 5_1:-42980729 Msa0731690:CDS
TAATGCATACACACTTGTCC+GGG 0.580587 5_1:+42979962 None:intergenic
AATCTCGGTTCAGTTGTTGG+TGG 0.587237 5_1:-42981059 Msa0731690:CDS
TTGTGTACAGTGTTATACAT+AGG 0.588288 5_1:-42979315 Msa0731690:three_prime_UTR
CTTCAACTAACTGGAAATCT+CGG 0.588590 5_1:-42981074 Msa0731690:CDS
TTATCTTTCACTTATGAGGG+AGG 0.590654 5_1:-42979361 Msa0731690:three_prime_UTR
CCATCTACAGCATTGTCACA+TGG 0.595436 5_1:-42980510 Msa0731690:CDS
CACAGCAATAGGAATTCCAA+TGG 0.596815 5_1:-42979778 Msa0731690:CDS
GCAAACGACAAAGCCGACCA+AGG 0.597047 5_1:+42980753 None:intergenic
CGACAAAGCCGACCAAGGAA+AGG 0.597478 5_1:+42980758 None:intergenic
AGATAGCAACCAAGTTCCAA+AGG 0.597801 5_1:-42980880 Msa0731690:CDS
TGCAGCATATTGAATCAGAT+GGG 0.597818 5_1:-42979665 Msa0731690:CDS
CAACCACAAACAAAGCTATG+AGG 0.601313 5_1:+42980682 None:intergenic
TTCCAGATAATTGTTGCACA+GGG 0.601749 5_1:-42980792 Msa0731690:CDS
AATTTGGAAGATGCCTGGAA+AGG 0.607041 5_1:+42980616 None:intergenic
TGTTAATTCTCGACCAACGA+TGG 0.609748 5_1:-42981828 Msa0731690:intron
CAGAGAAAGAGCTAGGATGG+AGG 0.611762 5_1:-42979706 Msa0731690:CDS
AATCGCTGCCAAGGGGATCG+CGG 0.612360 5_1:+42980557 None:intergenic
CAAGTGTGTATGCATTAGAT+CGG 0.615142 5_1:-42979956 Msa0731690:CDS
TGATGATAACAATCGTGGCA+TGG 0.616961 5_1:-42981108 Msa0731690:CDS
TGAATCAGATGGGTTAGTCG+TGG 0.624199 5_1:-42979655 Msa0731690:CDS
ATTGGAGATTATGATGGTGA+TGG 0.625170 5_1:-42979612 Msa0731690:CDS
CTTTGTCGTTTGCGCCGATG+TGG 0.625789 5_1:-42980743 Msa0731690:CDS
GAGCTATCAACACTGAGAAG+AGG 0.645148 5_1:+42981036 None:intergenic
GGGTATAAGCCTATTCCCAA+AGG 0.648713 5_1:-42979867 Msa0731690:CDS
GTGCCCTTATCTTCGAAATG+TGG 0.654369 5_1:+42980912 None:intergenic
GCAAAAGAATCGCTGCCAAG+GGG 0.681579 5_1:+42980550 None:intergenic
CCAGTCAGCTCTAACCACAT+CGG 0.691053 5_1:+42980729 None:intergenic
TCTACTGATGATAACAATCG+TGG 0.698441 5_1:-42981113 Msa0731690:CDS
GTTAGTCGTGGATAAGTCCG+AGG 0.702927 5_1:-42979643 Msa0731690:CDS
GGCATCTTCCAAATTCAGGG+AGG 0.742143 5_1:-42980608 Msa0731690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGACAATTTTGAATATA+TGG + chr5_1:42979563-42979582 None:intergenic 15.0%
!!! ATTAATCTTCTAAAAAAACT+TGG + chr5_1:42980823-42980842 None:intergenic 15.0%
!! GAATTAATGCAAATTATCTA+AGG + chr5_1:42979351-42979370 None:intergenic 20.0%
!! ATACATTCAAAATCAAAAGT+TGG + chr5_1:42979650-42979669 None:intergenic 20.0%
!!! TTTGAAGTCAATTGTATTTT+AGG - chr5_1:42979910-42979929 Msa0731690:CDS 20.0%
!! TCAATGATTACATAATTGTT+TGG - chr5_1:42980937-42980956 Msa0731690:CDS 20.0%
!! ATGTTTGTGCATAATTTAAT+TGG - chr5_1:42981083-42981102 Msa0731690:CDS 20.0%
!! ATTTAATTGGTTAAACTTTG+TGG - chr5_1:42981096-42981115 Msa0731690:CDS 20.0%
!! TTTAATTGGTTAAACTTTGT+GGG - chr5_1:42981097-42981116 Msa0731690:CDS 20.0%
!! ATTCAAAAGTTTATAGAGAA+GGG - chr5_1:42981604-42981623 Msa0731690:intron 20.0%
!! ATAAGTGAAAGATAAAACTA+TGG + chr5_1:42981754-42981773 None:intergenic 20.0%
!! GATGACAATGTAAATTTATA+TGG - chr5_1:42981827-42981846 Msa0731690:intron 20.0%
! TGAAAATTGAAACCATGTTT+AGG - chr5_1:42979437-42979456 Msa0731690:three_prime_UTR 25.0%
! TATGATAACATTGTGAAGTA+TGG - chr5_1:42979515-42979534 Msa0731690:three_prime_UTR 25.0%
! TGAATGTATCATAAAACAGT+TGG - chr5_1:42979661-42979680 Msa0731690:CDS 25.0%
! TACAATTTCAGGGATTAAAT+TGG - chr5_1:42979843-42979862 Msa0731690:CDS 25.0%
! AGAATTTCATTTCATGTTGT+TGG - chr5_1:42980136-42980155 Msa0731690:intron 25.0%
! GGATTAATAAGCATTATAGT+TGG - chr5_1:42980157-42980176 Msa0731690:intron 25.0%
! AATACATACTTATTTGTAGC+AGG + chr5_1:42980679-42980698 None:intergenic 25.0%
!! CGAATTTAGGATAATGAATT+GGG + chr5_1:42980748-42980767 None:intergenic 25.0%
!! ACGAATTTAGGATAATGAAT+TGG + chr5_1:42980749-42980768 None:intergenic 25.0%
! AAGCATTTGAAAAATGTTCA+TGG + chr5_1:42980790-42980809 None:intergenic 25.0%
!!! GAGTATTTTTGTTTACTTTG+TGG - chr5_1:42980976-42980995 Msa0731690:CDS 25.0%
! AAGAAAATATATTGCTCTAC+AGG - chr5_1:42981548-42981567 Msa0731690:intron 25.0%
! CATTCAAAAGTTTATAGAGA+AGG - chr5_1:42981603-42981622 Msa0731690:intron 25.0%
!! AATGACAGTTTGATCAATTT+TGG - chr5_1:42981668-42981687 Msa0731690:intron 25.0%
! ATGGTGAAAGATAAAAACTA+TGG + chr5_1:42981735-42981754 None:intergenic 25.0%
!!! AGTTTTATCTTTCACTTATG+AGG - chr5_1:42981755-42981774 Msa0731690:intron 25.0%
!! GTTTTATCTTTCACTTATGA+GGG - chr5_1:42981756-42981775 Msa0731690:intron 25.0%
! CAATGTAAATTTATATGGTC+TGG - chr5_1:42981832-42981851 Msa0731690:CDS 25.0%
! TTGTGAAGTATGGATTAACT+TGG - chr5_1:42979525-42979544 Msa0731690:exon 30.0%
! TGTGAAGTATGGATTAACTT+GGG - chr5_1:42979526-42979545 Msa0731690:exon 30.0%
TAATATCCAAATCACTACGT+TGG + chr5_1:42979594-42979613 None:intergenic 30.0%
ACTAACACTCCAAATCAAAA+GGG + chr5_1:42979693-42979712 None:intergenic 30.0%
TACTAACACTCCAAATCAAA+AGG + chr5_1:42979694-42979713 None:intergenic 30.0%
AGTTGACATCTTACAATTTC+AGG - chr5_1:42979832-42979851 Msa0731690:CDS 30.0%
GTTGACATCTTACAATTTCA+GGG - chr5_1:42979833-42979852 Msa0731690:CDS 30.0%
!! AAAATGTTTCCTTTGGAACT+TGG + chr5_1:42980252-42980271 None:intergenic 30.0%
! AAGTTCCAAAGGAAACATTT+TGG - chr5_1:42980251-42980270 Msa0731690:intron 30.0%
TAGGATAATGAATTGGGATT+GGG + chr5_1:42980742-42980761 None:intergenic 30.0%
TTAGGATAATGAATTGGGAT+TGG + chr5_1:42980743-42980762 None:intergenic 30.0%
GGAAACTACTAAACGAATTT+AGG + chr5_1:42980761-42980780 None:intergenic 30.0%
ACCAATTATGTGTGTACATA+TGG - chr5_1:42981008-42981027 Msa0731690:CDS 30.0%
TCCATATGTACACACATAAT+TGG + chr5_1:42981012-42981031 None:intergenic 30.0%
! ATTTTGTCTCAGCATGTTTA+CGG - chr5_1:42981232-42981251 Msa0731690:intron 30.0%
TTGTCTATTGGAGATTATGA+TGG - chr5_1:42981502-42981521 Msa0731690:intron 30.0%
AAAATTTCGTGTTTGCTTAG+TGG - chr5_1:42981630-42981649 Msa0731690:intron 30.0%
GTTCTATTACAATCCATGTT+TGG + chr5_1:42981700-42981719 None:intergenic 30.0%
TTGTGTACAGTGTTATACAT+AGG - chr5_1:42981805-42981824 Msa0731690:intron 30.0%
ACCTGTTGAGTTCAATCATT+TGG - chr5_1:42979381-42979400 Msa0731690:three_prime_UTR 35.0%
ACCAAATGATTGAACTCAAC+AGG + chr5_1:42979385-42979404 None:intergenic 35.0%
TTGAAACCATGTTTAGGTCA+TGG - chr5_1:42979443-42979462 Msa0731690:three_prime_UTR 35.0%
TCTACTGATGATAACAATCG+TGG - chr5_1:42980007-42980026 Msa0731690:intron 35.0%
CTTCAACTAACTGGAAATCT+CGG - chr5_1:42980046-42980065 Msa0731690:intron 35.0%
ATAGCTCCAATAACAGTCTT+TGG - chr5_1:42980100-42980119 Msa0731690:intron 35.0%
ATCTTCGAAATGTGGATCTT+TGG + chr5_1:42980203-42980222 None:intergenic 35.0%
AGATCCACATTTCGAAGATA+AGG - chr5_1:42980204-42980223 Msa0731690:intron 35.0%
GATCCACATTTCGAAGATAA+GGG - chr5_1:42980205-42980224 Msa0731690:intron 35.0%
! TGGAGTAAGAGATTTGTTTC+AGG - chr5_1:42980276-42980295 Msa0731690:intron 35.0%
TTTGTTTCAGGAAGCCAAAT+CGG - chr5_1:42980288-42980307 Msa0731690:intron 35.0%
TTTCCAGATAATTGTTGCAC+AGG - chr5_1:42980327-42980346 Msa0731690:intron 35.0%
TTCCAGATAATTGTTGCACA+GGG - chr5_1:42980328-42980347 Msa0731690:intron 35.0%
!! TTTCCTCATAGCTTTGTTTG+TGG - chr5_1:42980435-42980454 Msa0731690:intron 35.0%
AGAATTATCCTCCCTGAATT+TGG + chr5_1:42980523-42980542 None:intergenic 35.0%
!! TGGTTTGATGCTTGTCATTT+TGG - chr5_1:42980630-42980649 Msa0731690:CDS 35.0%
!!! GGTTTGATGCTTGTCATTTT+GGG - chr5_1:42980631-42980650 Msa0731690:CDS 35.0%
!!! GTTTGATGCTTGTCATTTTG+GGG - chr5_1:42980632-42980651 Msa0731690:CDS 35.0%
!!! TTTTGGGGCTCTTTATATCT+TGG - chr5_1:42980647-42980666 Msa0731690:CDS 35.0%
GAAAAATGTTCATGGCAAGT+TGG + chr5_1:42980782-42980801 None:intergenic 35.0%
! CAATGCTTGTTGCAATACAT+TGG - chr5_1:42980863-42980882 Msa0731690:CDS 35.0%
AAATGAAGCATACAGCTATG+TGG - chr5_1:42981034-42981053 Msa0731690:CDS 35.0%
GGAACTATCTCTGCAAAAAT+TGG + chr5_1:42981130-42981149 None:intergenic 35.0%
CAAGTGTGTATGCATTAGAT+CGG - chr5_1:42981164-42981183 Msa0731690:CDS 35.0%
! TTTTGTCTCAGCATGTTTAC+GGG - chr5_1:42981233-42981252 Msa0731690:intron 35.0%
AAGTCTCTTTACACAGCAAT+AGG - chr5_1:42981331-42981350 Msa0731690:intron 35.0%
ATTAAACAGCATAGAGCCAT+TGG + chr5_1:42981361-42981380 None:intergenic 35.0%
! GATGGAGGCTTTAATAGAAT+CGG - chr5_1:42981429-42981448 Msa0731690:intron 35.0%
ATGCAGCATATTGAATCAGA+TGG - chr5_1:42981454-42981473 Msa0731690:intron 35.0%
TGCAGCATATTGAATCAGAT+GGG - chr5_1:42981455-42981474 Msa0731690:intron 35.0%
ATCTCCAATAGACAATTCCT+CGG + chr5_1:42981497-42981516 None:intergenic 35.0%
! ATTGGAGATTATGATGGTGA+TGG - chr5_1:42981508-42981527 Msa0731690:intron 35.0%
ATTCTCCAACTTAGCTGATT+AGG - chr5_1:42981579-42981598 Msa0731690:intron 35.0%
AATGACCTAATCAGCTAAGT+TGG + chr5_1:42981587-42981606 None:intergenic 35.0%
!! ATTTTGGCATCAACCAAACA+TGG - chr5_1:42981684-42981703 Msa0731690:intron 35.0%
TTATCTTTCACTTATGAGGG+AGG - chr5_1:42981759-42981778 Msa0731690:intron 35.0%
TGTTAATTCTCGACCAACGA+TGG - chr5_1:42979292-42979311 Msa0731690:three_prime_UTR 40.0%
AGCTAGAGCTTGGATTAAAC+TGG - chr5_1:42979319-42979338 Msa0731690:three_prime_UTR 40.0%
GCTAGAGCTTGGATTAAACT+GGG - chr5_1:42979320-42979339 Msa0731690:three_prime_UTR 40.0%
ATCCAAATCACTACGTTGGA+TGG + chr5_1:42979590-42979609 None:intergenic 40.0%
TCGCGAGGATTAAATGGAAT+TGG - chr5_1:42979941-42979960 Msa0731690:CDS 40.0%
ATCAGTAGAGTCTGCAACTA+AGG + chr5_1:42979996-42980015 None:intergenic 40.0%
TGATGATAACAATCGTGGCA+TGG - chr5_1:42980012-42980031 Msa0731690:intron 40.0%
TTTGGATGGCTTCAACTAAC+TGG - chr5_1:42980037-42980056 Msa0731690:intron 40.0%
GCGATACCAAAGACTGTTAT+TGG + chr5_1:42980109-42980128 None:intergenic 40.0%
ATAACAGTCTTTGGTATCGC+TGG - chr5_1:42980109-42980128 Msa0731690:intron 40.0%
AGATAGCAACCAAGTTCCAA+AGG - chr5_1:42980240-42980259 Msa0731690:intron 40.0%
CCAGACCAAAATGTTTCCTT+TGG + chr5_1:42980259-42980278 None:intergenic 40.0%
!! CCAAAGGAAACATTTTGGTC+TGG - chr5_1:42980256-42980275 Msa0731690:intron 40.0%
CGAAATCCTAGTAACCGATT+TGG + chr5_1:42980305-42980324 None:intergenic 40.0%
CAACCACAAACAAAGCTATG+AGG + chr5_1:42980441-42980460 None:intergenic 40.0%
TTTGTGGTTGCAAGTTCTGT+TGG - chr5_1:42980451-42980470 Msa0731690:intron 40.0%
! GGTTTGTTTGGTGGTAAGAT+GGG - chr5_1:42980475-42980494 Msa0731690:CDS 40.0%
AATTTGGAAGATGCCTGGAA+AGG + chr5_1:42980507-42980526 None:intergenic 40.0%
ATTCTAGCACAGATAAGCTC+TGG - chr5_1:42980538-42980557 Msa0731690:CDS 40.0%
AATGCTGTAGATGGATCATC+TGG + chr5_1:42980604-42980623 None:intergenic 40.0%
GGGCTCTTTATATCTTGGAA+TGG - chr5_1:42980652-42980671 Msa0731690:CDS 40.0%
! TGCTTGTTGCAATACATTGG+TGG - chr5_1:42980866-42980885 Msa0731690:CDS 40.0%
TAATGCATACACACTTGTCC+GGG + chr5_1:42981161-42981180 None:intergenic 40.0%
CTAATGCATACACACTTGTC+CGG + chr5_1:42981162-42981181 None:intergenic 40.0%
TGAGATGCACTAGATCCTTT+GGG + chr5_1:42981271-42981290 None:intergenic 40.0%
TTGAGATGCACTAGATCCTT+TGG + chr5_1:42981272-42981291 None:intergenic 40.0%
! CCAATGATGAAGCATTCTCT+CGG + chr5_1:42981309-42981328 None:intergenic 40.0%
CACAGCAATAGGAATTCCAA+TGG - chr5_1:42981342-42981361 Msa0731690:intron 40.0%
AAGTCCGAGGAATTGTCTAT+TGG - chr5_1:42981490-42981509 Msa0731690:intron 40.0%
ATTTCGTGTTTGCTTAGTGG+TGG - chr5_1:42981633-42981652 Msa0731690:intron 40.0%
ATGACGCCATGACCTAAACA+TGG + chr5_1:42979452-42979471 None:intergenic 45.0%
GTCCATCCAACGTAGTGATT+TGG - chr5_1:42979585-42979604 Msa0731690:CDS 45.0%
!! TGGATGCTGCCCTTTTGATT+TGG - chr5_1:42979681-42979700 Msa0731690:CDS 45.0%
!! TTTTAGGTAGCAGTTTCGCG+AGG - chr5_1:42979926-42979945 Msa0731690:CDS 45.0%
GCAGTTTCGCGAGGATTAAA+TGG - chr5_1:42979935-42979954 Msa0731690:CDS 45.0%
GCAACTAAGGACTGAATTGC+AGG + chr5_1:42979983-42980002 None:intergenic 45.0%
! AACAATCGTGGCATGGCTTT+TGG - chr5_1:42980019-42980038 Msa0731690:intron 45.0%
GGAAATCTCGGTTCAGTTGT+TGG - chr5_1:42980058-42980077 Msa0731690:intron 45.0%
AATCTCGGTTCAGTTGTTGG+TGG - chr5_1:42980061-42980080 Msa0731690:intron 45.0%
GAGCTATCAACACTGAGAAG+AGG + chr5_1:42980087-42980106 None:intergenic 45.0%
GTGCCCTTATCTTCGAAATG+TGG + chr5_1:42980211-42980230 None:intergenic 45.0%
AGGAAGCCAAATCGGTTACT+AGG - chr5_1:42980296-42980315 Msa0731690:intron 45.0%
CACCCTGTGCAACAATTATC+TGG + chr5_1:42980333-42980352 None:intergenic 45.0%
! ATTGTTGCACAGGGTGTTAC+TGG - chr5_1:42980337-42980356 Msa0731690:intron 45.0%
!! GTGTTACTGGTTCCTTTCCT+TGG - chr5_1:42980350-42980369 Msa0731690:intron 45.0%
!! TACTGGTTCCTTTCCTTGGT+CGG - chr5_1:42980354-42980373 Msa0731690:intron 45.0%
! AGTTCTGTTGGCGGTTTGTT+TGG - chr5_1:42980463-42980482 Msa0731690:CDS 45.0%
! CGGTTTGTTTGGTGGTAAGA+TGG - chr5_1:42980474-42980493 Msa0731690:CDS 45.0%
AGATGGGAGATATCCTTTCC+AGG - chr5_1:42980491-42980510 Msa0731690:CDS 45.0%
TCCAGGCATCTTCCAAATTC+AGG - chr5_1:42980508-42980527 Msa0731690:CDS 45.0%
CCAGGCATCTTCCAAATTCA+GGG - chr5_1:42980509-42980528 Msa0731690:CDS 45.0%
AGCAAAAGAATCGCTGCCAA+GGG + chr5_1:42980574-42980593 None:intergenic 45.0%
! TTGGCAGCGATTCTTTTGCT+GGG - chr5_1:42980574-42980593 Msa0731690:CDS 45.0%
CCATGTGACAATGCTGTAGA+TGG + chr5_1:42980613-42980632 None:intergenic 45.0%
CCATCTACAGCATTGTCACA+TGG - chr5_1:42980610-42980629 Msa0731690:CDS 45.0%
AGATAGTTCCAGAGAGATCC+CGG - chr5_1:42981140-42981159 Msa0731690:CDS 45.0%
TGAGACAAAATTCCCACTGC+AGG + chr5_1:42981223-42981242 None:intergenic 45.0%
GGGTATAAGCCTATTCCCAA+AGG - chr5_1:42981253-42981272 Msa0731690:intron 45.0%
! GCACTAGATCCTTTGGGAAT+AGG + chr5_1:42981265-42981284 None:intergenic 45.0%
CCGAGAGAATGCTTCATCAT+TGG - chr5_1:42981306-42981325 Msa0731690:intron 45.0%
TCTTTCTCTGTCTCTCGGAT+AGG + chr5_1:42981404-42981423 None:intergenic 45.0%
! CTAGCTCTTTCTCTGTCTCT+CGG + chr5_1:42981409-42981428 None:intergenic 45.0%
AGACAGAGAAAGAGCTAGGA+TGG - chr5_1:42981411-42981430 Msa0731690:intron 45.0%
!! TGAATCAGATGGGTTAGTCG+TGG - chr5_1:42981465-42981484 Msa0731690:intron 45.0%
! GCTCTAGCTCAAACCATCGT+TGG + chr5_1:42979308-42979327 None:intergenic 50.0%
CGATGGTTTGAGCTAGAGCT+TGG - chr5_1:42979309-42979328 Msa0731690:three_prime_UTR 50.0%
! ATCGTGGCATGGCTTTTGGA+TGG - chr5_1:42980023-42980042 Msa0731690:intron 50.0%
CAGTCTTTGGTATCGCTGGT+TGG - chr5_1:42980113-42980132 Msa0731690:intron 50.0%
! CCAGTCAGCTCTAACCACAT+CGG + chr5_1:42980394-42980413 None:intergenic 50.0%
GTGGTTGCAAGTTCTGTTGG+CGG - chr5_1:42980454-42980473 Msa0731690:CDS 50.0%
! TCTGTTGGCGGTTTGTTTGG+TGG - chr5_1:42980466-42980485 Msa0731690:CDS 50.0%
CCCTGAATTTGGAAGATGCC+TGG + chr5_1:42980512-42980531 None:intergenic 50.0%
GGCATCTTCCAAATTCAGGG+AGG - chr5_1:42980512-42980531 Msa0731690:CDS 50.0%
GCAAAAGAATCGCTGCCAAG+GGG + chr5_1:42980573-42980592 None:intergenic 50.0%
CAGCAAAAGAATCGCTGCCA+AGG + chr5_1:42980575-42980594 None:intergenic 50.0%
! CTTGGCAGCGATTCTTTTGC+TGG - chr5_1:42980573-42980592 Msa0731690:CDS 50.0%
! ATCTTTTGCTCCTCCTGCAG+TGG - chr5_1:42981207-42981226 Msa0731690:intron 50.0%
! TCTTTTGCTCCTCCTGCAGT+GGG - chr5_1:42981208-42981227 Msa0731690:intron 50.0%
GACAAAATTCCCACTGCAGG+AGG + chr5_1:42981220-42981239 None:intergenic 50.0%
CGAGAGACAGAGAAAGAGCT+AGG - chr5_1:42981407-42981426 Msa0731690:intron 50.0%
CAGAGAAAGAGCTAGGATGG+AGG - chr5_1:42981414-42981433 Msa0731690:intron 50.0%
GTTAGTCGTGGATAAGTCCG+AGG - chr5_1:42981477-42981496 Msa0731690:intron 50.0%
CGACAAAGCCGACCAAGGAA+AGG + chr5_1:42980365-42980384 None:intergenic 55.0%
GCAAACGACAAAGCCGACCA+AGG + chr5_1:42980370-42980389 None:intergenic 55.0%
! CTTTGTCGTTTGCGCCGATG+TGG - chr5_1:42980377-42980396 Msa0731690:intron 55.0%
CCGATGTGGTTAGAGCTGAC+TGG - chr5_1:42980391-42980410 Msa0731690:intron 55.0%
ACACTTGTCCGGGATCTCTC+TGG + chr5_1:42981151-42981170 None:intergenic 55.0%
AATCGCTGCCAAGGGGATCG+CGG + chr5_1:42980566-42980585 None:intergenic 60.0%
CTCTGGATCCGCGATCCCCT+TGG - chr5_1:42980555-42980574 Msa0731690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 42979287 42981855 42979287 ID=Msa0731690;Name=Msa0731690
chr5_1 mRNA 42979287 42981855 42979287 ID=Msa0731690-mRNA-1;Parent=Msa0731690;Name=Msa0731690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|0.66|1|1|3|255|419
chr5_1 exon 42979287 42980016 42979287 ID=Msa0731690-mRNA-1:exon:12322;Parent=Msa0731690-mRNA-1
chr5_1 exon 42980453 42981210 42980453 ID=Msa0731690-mRNA-1:exon:12321;Parent=Msa0731690-mRNA-1
chr5_1 exon 42981829 42981855 42981829 ID=Msa0731690-mRNA-1:exon:12320;Parent=Msa0731690-mRNA-1
chr5_1 CDS 42981829 42981855 42981829 ID=Msa0731690-mRNA-1:cds;Parent=Msa0731690-mRNA-1
chr5_1 CDS 42980453 42981210 42980453 ID=Msa0731690-mRNA-1:cds;Parent=Msa0731690-mRNA-1
chr5_1 CDS 42979542 42980016 42979542 ID=Msa0731690-mRNA-1:cds;Parent=Msa0731690-mRNA-1
chr5_1 three_prime_UTR 42979287 42979541 42979287 ID=Msa0731690-mRNA-1:three_prime_utr;Parent=Msa0731690-mRNA-1
Gene Sequence

>Msa0731690

ATGGGTGTTAATTCTCGACCAACGATGGTAGCAGTTTCGCGAGGATTAAATGGAATTGGTCTTGCGCTTGTAACTCCTGCAATTCAGTCCTTAGTTGCAGACTCTACTGATGATAACAATCGTGGCATGGCTTTTGGATGGCTTCAACTAACTGGAAATCTCGGTTCAGTTGTTGGTGGCCTCTTCTCAGTGTTGATAGCTCCAATAACAGTCTTTGGTATCGCTGGTTGGAGAATTTCATTTCATGTTGTTGGATTAATAAGCATTATAGTTGGCACTTTAGTTTACATCTTTGCCAAAGATCCACATTTCGAAGATAAGGGCACGCTTGCAAAAGATAGCAACCAAGTTCCAAAGGAAACATTTTGGTCTGGAGTAAGAGATTTGTTTCAGGAAGCCAAATCGGTTACTAGGATTTCGTCTTTCCAGATAATTGTTGCACAGGGTGTTACTGGTTCCTTTCCTTGGTCGGCTTTGTCGTTTGCGCCGATGTGGTTAGAGCTGACTGGCTTTTCACATGCAAAAACTGCTTTCCTCATAGCTTTGTTTGTGGTTGCAAGTTCTGTTGGCGGTTTGTTTGGTGGTAAGATGGGAGATATCCTTTCCAGGCATCTTCCAAATTCAGGGAGGATAATTCTAGCACAGATAAGCTCTGGATCCGCGATCCCCTTGGCAGCGATTCTTTTGCTGGGTTTACCAGATGATCCATCTACAGCATTGTCACATGGTTTGATGCTTGTCATTTTGGGGCTCTTTATATCTTGGAATGGTCCTGCTACAAATAATCCAATTTTTGCAGAGATAGTTCCAGAGAGATCCCGGACAAGTGTGTATGCATTAGATCGGTCTTTTGAGTCTATACTATCATCTTTTGCTCCTCCTGCAGTGGGAATTTTGTCTCAGCATGTTTACGGGTATAAGCCTATTCCCAAAGGATCTAGTGCATCTCAAGAGATTTTAACAGACCGAGAGAATGCTTCATCATTGGCAAAGTCTCTTTACACAGCAATAGGAATTCCAATGGCTCTATGCTGTTTAATCTATTCATTTCTTTATAAGACCTATCCGAGAGACAGAGAAAGAGCTAGGATGGAGGCTTTAATAGAATCGGAGATGCAGCATATTGAATCAGATGGGTTAGTCGTGGATAAGTCCGAGGAATTGTCTATTGGAGATTATGATGGTGATGGTGCTGATCTTGATGATGAAGAAAATATATTGCTCTACAGGCAGTTGACATTCTCCAACTTAGCTGATTAG

Protein sequence

>Msa0731690

MGVNSRPTMVAVSRGLNGIGLALVTPAIQSLVADSTDDNNRGMAFGWLQLTGNLGSVVGGLFSVLIAPITVFGIAGWRISFHVVGLISIIVGTLVYIFAKDPHFEDKGTLAKDSNQVPKETFWSGVRDLFQEAKSVTRISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHAKTAFLIALFVVASSVGGLFGGKMGDILSRHLPNSGRIILAQISSGSAIPLAAILLLGLPDDPSTALSHGLMLVILGLFISWNGPATNNPIFAEIVPERSRTSVYALDRSFESILSSFAPPAVGILSQHVYGYKPIPKGSSASQEILTDRENASSLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARMEALIESEMQHIESDGLVVDKSEELSIGDYDGDGADLDDEENILLYRQLTFSNLAD*