Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223210 | XP_003597357.1 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223210 | sp|Q0WQX7|RBL1_ARATH | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.23e-174 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223210 | G7IHP5 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0223210 | 0.808409 | 3.141186e-50 | -8.615850e-47 |
| Msa0001960 | Msa0223210 | 0.805505 | 1.292604e-49 | -8.615850e-47 |
| Msa0005890 | Msa0223210 | 0.819542 | 1.099798e-52 | -8.615850e-47 |
| Msa0017950 | Msa0223210 | 0.805329 | 1.406918e-49 | -8.615850e-47 |
| Msa0081570 | Msa0223210 | 0.809194 | 2.134104e-50 | -8.615850e-47 |
| Msa0094780 | Msa0223210 | 0.819907 | 9.077985e-53 | -8.615850e-47 |
| Msa0140280 | Msa0223210 | 0.809105 | 2.230316e-50 | -8.615850e-47 |
| Msa0173730 | Msa0223210 | 0.807559 | 4.764383e-50 | -8.615850e-47 |
| Msa0190570 | Msa0223210 | 0.812144 | 4.914176e-51 | -8.615850e-47 |
| Msa0223210 | Msa0225100 | 0.814496 | 1.495718e-51 | -8.615850e-47 |
| Msa0223210 | Msa0225460 | 0.820923 | 5.306387e-53 | -8.615850e-47 |
| Msa0223210 | Msa0225680 | 0.825558 | 4.389776e-54 | -8.615850e-47 |
| Msa0223210 | Msa0225860 | 0.841942 | 3.498268e-58 | -8.615850e-47 |
| Msa0223210 | Msa0242590 | 0.808253 | 3.391539e-50 | -8.615850e-47 |
| Msa0223210 | Msa0260510 | 0.816859 | 4.449936e-52 | -8.615850e-47 |
| Msa0223210 | Msa0264400 | 0.934694 | 2.713028e-96 | -8.615850e-47 |
| Msa0223210 | Msa0266180 | 0.804079 | 2.565385e-49 | -8.615850e-47 |
| Msa0223210 | Msa0267110 | 0.807698 | 4.450696e-50 | -8.615850e-47 |
| Msa0223210 | Msa0271880 | 0.807871 | 4.090886e-50 | -8.615850e-47 |
| Msa0223210 | Msa0298470 | 0.828502 | 8.676166e-55 | -8.615850e-47 |
| Msa0223210 | Msa0302290 | 0.888942 | 3.772611e-73 | -8.615850e-47 |
| Msa0223210 | Msa0310850 | 0.815540 | 8.772548e-52 | -8.615850e-47 |
| Msa0223210 | Msa0330380 | 0.810390 | 1.180348e-50 | -8.615850e-47 |
| Msa0223210 | Msa0339650 | 0.975963 | 6.303732e-141 | -8.615850e-47 |
| Msa0223210 | Msa0340500 | 0.801885 | 7.288525e-49 | -8.615850e-47 |
| Msa0223210 | Msa0380670 | 0.804630 | 1.969527e-49 | -8.615850e-47 |
| Msa0223210 | Msa0430300 | 0.817242 | 3.651029e-52 | -8.615850e-47 |
| Msa0223210 | Msa0483100 | 0.806463 | 8.125544e-50 | -8.615850e-47 |
| Msa0223210 | Msa0484380 | 0.814126 | 1.805627e-51 | -8.615850e-47 |
| Msa0223210 | Msa0548470 | 0.810636 | 1.044657e-50 | -8.615850e-47 |
| Msa0223210 | Msa0567170 | 0.801034 | 1.089397e-48 | -8.615850e-47 |
| Msa0223210 | Msa0571290 | 0.820679 | 6.039932e-53 | -8.615850e-47 |
| Msa0223210 | Msa0580370 | 0.824500 | 7.803687e-54 | -8.615850e-47 |
| Msa0223210 | Msa0581470 | 0.803771 | 2.973747e-49 | -8.615850e-47 |
| Msa0223210 | Msa0586220 | 0.810616 | 1.055247e-50 | -8.615850e-47 |
| Msa0223210 | Msa0600930 | 0.805224 | 1.480033e-49 | -8.615850e-47 |
| Msa0223210 | Msa0624900 | 0.815349 | 9.677525e-52 | -8.615850e-47 |
| Msa0223210 | Msa0626450 | 0.820919 | 5.318845e-53 | -8.615850e-47 |
| Msa0223210 | Msa0626490 | 0.818578 | 1.821708e-52 | -8.615850e-47 |
| Msa0223210 | Msa0644410 | 0.808672 | 2.760638e-50 | -8.615850e-47 |
| Msa0223210 | Msa0664090 | 0.817929 | 2.555223e-52 | -8.615850e-47 |
| Msa0223210 | Msa0664600 | 0.822423 | 2.387521e-53 | -8.615850e-47 |
| Msa0223210 | Msa0670100 | 0.813103 | 3.031256e-51 | -8.615850e-47 |
| Msa0223210 | Msa0721080 | 0.801192 | 1.011304e-48 | -8.615850e-47 |
| Msa0223210 | Msa0735780 | 0.800907 | 1.156475e-48 | -8.615850e-47 |
| Msa0223210 | Msa0741220 | 0.812655 | 3.801027e-51 | -8.615850e-47 |
| Msa0223210 | Msa0795870 | 0.833653 | 4.712539e-56 | -8.615850e-47 |
| Msa0223210 | Msa0833650 | 0.832490 | 9.178995e-56 | -8.615850e-47 |
| Msa0223210 | Msa0903070 | 0.810489 | 1.123660e-50 | -8.615850e-47 |
| Msa0223210 | Msa1019430 | 0.808461 | 3.061943e-50 | -8.615850e-47 |
| Msa0223210 | Msa1019470 | 0.811883 | 5.603692e-51 | -8.615850e-47 |
| Msa0223210 | Msa1044470 | 0.814598 | 1.419748e-51 | -8.615850e-47 |
| Msa0223210 | Msa1132840 | 0.823819 | 1.128259e-53 | -8.615850e-47 |
| Msa0223210 | Msa1186020 | 0.808363 | 3.213749e-50 | -8.615850e-47 |
| Msa0223210 | Msa1192570 | 0.811875 | 5.625741e-51 | -8.615850e-47 |
| Msa0223210 | Msa1198250 | 0.816472 | 5.435231e-52 | -8.615850e-47 |
| Msa0223210 | Msa1200890 | 0.803880 | 2.821906e-49 | -8.615850e-47 |
| Msa0223210 | Msa1208950 | 0.819601 | 1.066343e-52 | -8.615850e-47 |
| Msa0223210 | Msa1215870 | 0.811805 | 5.826098e-51 | -8.615850e-47 |
| Msa0223210 | Msa1251930 | 0.801339 | 9.433902e-49 | -8.615850e-47 |
| Msa0223210 | Msa1298370 | 0.809000 | 2.348808e-50 | -8.615850e-47 |
| Msa0223210 | Msa1307630 | 0.803219 | 3.870087e-49 | -8.615850e-47 |
| Msa0223210 | Msa1320670 | 0.810429 | 1.157986e-50 | -8.615850e-47 |
| Msa0223210 | Msa1348090 | 0.802700 | 4.954813e-49 | -8.615850e-47 |
| Msa0223210 | Msa1392580 | 0.815542 | 8.763459e-52 | -8.615850e-47 |
| Msa0223210 | Msa1397400 | 0.822887 | 1.862184e-53 | -8.615850e-47 |
| Msa0223210 | Msa1420950 | 0.828409 | 9.135602e-55 | -8.615850e-47 |
| Msa0223210 | Msa1427200 | 0.985621 | 3.861659e-164 | -8.615850e-47 |
| Msa0223210 | Msa1437640 | 0.810142 | 1.335043e-50 | -8.615850e-47 |
| Msa0223210 | Msa1440960 | 0.824442 | 8.054652e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223210 | MtrunA17_Chr2g0328271 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Msa0223210 | MtrunA17_Chr4g0009841 | 62.824 | 347 | 126 | 2 | 37 | 383 | 34 | 377 | 1.18e-168 | 476 |
| Msa0223210 | MtrunA17_Chr7g0238701 | 59.178 | 365 | 140 | 4 | 23 | 383 | 4 | 363 | 2.51e-150 | 429 |
| Msa0223210 | MtrunA17_Chr6g0472501 | 59.412 | 340 | 122 | 3 | 1 | 338 | 1 | 326 | 2.14e-127 | 369 |
| Msa0223210 | MtrunA17_Chr1g0203681 | 53.191 | 329 | 135 | 3 | 16 | 339 | 5 | 319 | 2.59e-113 | 333 |
| Msa0223210 | MtrunA17_Chr2g0332941 | 55.636 | 275 | 114 | 3 | 44 | 312 | 30 | 302 | 5.47e-99 | 296 |
| Msa0223210 | MtrunA17_Chr3g0115331 | 39.257 | 377 | 216 | 5 | 13 | 382 | 9 | 379 | 2.35e-87 | 269 |
| Msa0223210 | MtrunA17_Chr2g0322601 | 39.500 | 200 | 94 | 5 | 142 | 340 | 1 | 174 | 1.15e-32 | 120 |
| Msa0223210 | MtrunA17_Chr2g0322611 | 48.913 | 92 | 47 | 0 | 99 | 190 | 2 | 93 | 3.72e-23 | 92.8 |
| Msa0223210 | MtrunA17_Chr8g0392201 | 38.542 | 96 | 43 | 2 | 225 | 320 | 28 | 107 | 1.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223210 | AT2G29050.1 | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.25e-175 | 494 |
| Msa0223210 | AT3G53780.2 | 61.318 | 349 | 127 | 2 | 35 | 383 | 54 | 394 | 1.10e-153 | 439 |
| Msa0223210 | AT1G63120.1 | 63.946 | 294 | 98 | 2 | 44 | 335 | 30 | 317 | 1.09e-128 | 372 |
| Msa0223210 | AT2G29050.2 | 58.104 | 327 | 106 | 3 | 6 | 304 | 15 | 338 | 4.91e-126 | 367 |
| Msa0223210 | AT5G07250.1 | 60.061 | 328 | 116 | 3 | 21 | 337 | 22 | 345 | 5.70e-125 | 364 |
| Msa0223210 | AT3G53780.1 | 61.957 | 276 | 99 | 1 | 108 | 383 | 1 | 270 | 3.57e-124 | 359 |
| Msa0223210 | AT1G12750.4 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0223210 | AT1G12750.7 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0223210 | AT1G12750.6 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0223210 | AT1G12750.3 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0223210 | AT1G12750.1 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0223210 | AT3G53780.3 | 62.547 | 267 | 92 | 2 | 35 | 301 | 54 | 312 | 2.33e-114 | 336 |
| Msa0223210 | AT1G52580.1 | 54.209 | 297 | 127 | 6 | 20 | 311 | 4 | 296 | 4.39e-97 | 292 |
| Msa0223210 | AT1G77860.2 | 44.083 | 338 | 184 | 4 | 48 | 382 | 49 | 384 | 1.12e-96 | 293 |
| Msa0223210 | AT4G23070.1 | 55.326 | 291 | 125 | 2 | 44 | 334 | 28 | 313 | 1.51e-93 | 283 |
| Msa0223210 | AT5G07250.2 | 49.695 | 328 | 103 | 4 | 21 | 337 | 22 | 298 | 1.55e-88 | 270 |
| Msa0223210 | AT1G77860.1 | 45.151 | 299 | 159 | 4 | 48 | 343 | 49 | 345 | 1.28e-84 | 261 |
| Msa0223210 | AT1G12750.5 | 60.326 | 184 | 71 | 1 | 33 | 214 | 6 | 189 | 2.42e-76 | 235 |
| Msa0223210 | AT1G12750.2 | 59.893 | 187 | 73 | 1 | 33 | 217 | 6 | 192 | 4.45e-76 | 234 |
Find 114 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGGGTCTTGTTGGATTC+TGG | 0.167687 | 2_1:+72737187 | Msa0223210:five_prime_UTR |
| ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | 2_1:+72738704 | Msa0223210:CDS |
| AAATGCTGTCGAATATTATT+AGG | 0.205490 | 2_1:+72740310 | Msa0223210:three_prime_UTR |
| TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | 2_1:+72739349 | Msa0223210:CDS |
| CTCTATGTGATATCTGGTTT+TGG | 0.246364 | 2_1:+72738952 | Msa0223210:CDS |
| GGATTTCTCTATGTGATATC+TGG | 0.262897 | 2_1:+72738946 | Msa0223210:CDS |
| TCTCAGAGCTCTTCATTAAT+TGG | 0.278075 | 2_1:+72739061 | Msa0223210:CDS |
| AATGGAATGGAAGATATATT+TGG | 0.280921 | 2_1:+72740256 | Msa0223210:three_prime_UTR |
| TCTTTCCTATTACTCATTGC+AGG | 0.286895 | 2_1:+72739462 | Msa0223210:CDS |
| CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | 2_1:-72739467 | None:intergenic |
| TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | 2_1:+72739297 | Msa0223210:CDS |
| GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | 2_1:+72738624 | Msa0223210:CDS |
| CTTGAACAAGAATTTGGATT+TGG | 0.310501 | 2_1:+72738710 | Msa0223210:CDS |
| ATCTGAAATCTTTGTTCAAA+AGG | 0.315789 | 2_1:+72737340 | Msa0223210:five_prime_UTR |
| CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | 2_1:+72739303 | Msa0223210:CDS |
| AACAAATTCCTAACTTTGTC+AGG | 0.325137 | 2_1:+72737170 | Msa0223210:five_prime_UTR |
| TCACTCGTGATCGTGATTTC+AGG | 0.355861 | 2_1:+72737484 | Msa0223210:CDS |
| TTGTGTATATGATTCATTCT+TGG | 0.360552 | 2_1:+72740074 | Msa0223210:three_prime_UTR |
| TAACTTTGTCAGGGTCTTGT+TGG | 0.364641 | 2_1:+72737180 | Msa0223210:five_prime_UTR |
| CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | 2_1:+72737660 | Msa0223210:CDS |
| TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | 2_1:+72737413 | Msa0223210:CDS |
| GGCATCTCAGTTGGTGCATC+TGG | 0.372637 | 2_1:+72739009 | Msa0223210:CDS |
| TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | 2_1:+72739315 | Msa0223210:CDS |
| CTTGTATATGGTTGCATGGT+GGG | 0.379600 | 2_1:+72738636 | Msa0223210:CDS |
| TGTCCTTTCGCAGTTAGAAT+TGG | 0.379685 | 2_1:+72738925 | Msa0223210:intron |
| TTGGACGATATATGCCAATA+AGG | 0.382911 | 2_1:+72739080 | Msa0223210:CDS |
| GGTGCATCTGGTGCATTGTT+TGG | 0.382955 | 2_1:+72739021 | Msa0223210:CDS |
| AGCCAACAACAGTCTAAATC+TGG | 0.385356 | 2_1:+72739375 | Msa0223210:CDS |
| ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | 2_1:-72739377 | None:intergenic |
| AACAAGACCCTGACAAAGTT+AGG | 0.404982 | 2_1:-72737178 | None:intergenic |
| AATGCTGTCGAATATTATTA+GGG | 0.406993 | 2_1:+72740311 | Msa0223210:three_prime_UTR |
| GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | 2_1:+72739714 | Msa0223210:CDS |
| TCTATGCAGACAACGGAATT+CGG | 0.409614 | 2_1:+72739894 | Msa0223210:intron |
| GAAATGGGTTTGAATCAGTT+AGG | 0.421296 | 2_1:-72737254 | None:intergenic |
| ACCGTATCAATATGTGTTGT+GGG | 0.439348 | 2_1:+72739434 | Msa0223210:CDS |
| GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | 2_1:+72739252 | Msa0223210:CDS |
| TTGTTCTCAGTCGGCAATGA+TGG | 0.441972 | 2_1:+72740114 | Msa0223210:three_prime_UTR |
| GTCTGCGTTATTCATACAAA+CGG | 0.445629 | 2_1:+72738987 | Msa0223210:CDS |
| TCTGAAATCTTTGTTCAAAA+GGG | 0.452645 | 2_1:+72737341 | Msa0223210:five_prime_UTR |
| GGGTCTTGTTGGATTCTGGC+TGG | 0.453364 | 2_1:+72737191 | Msa0223210:five_prime_UTR |
| TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | 2_1:+72737594 | Msa0223210:CDS |
| AGTAATAAACTTATGATGGC+TGG | 0.458120 | 2_1:-72740149 | None:intergenic |
| GGTGCATTGTTTGGCTTACT+CGG | 0.462230 | 2_1:+72739030 | Msa0223210:CDS |
| AAAGAGAATCTTCCAAGAAA+AGG | 0.470067 | 2_1:-72737630 | None:intergenic |
| TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | 2_1:+72737500 | Msa0223210:CDS |
| GTTGACAATTTCGCTCATCT+AGG | 0.472592 | 2_1:+72739288 | Msa0223210:CDS |
| ACACATGCAAAATTTCTTGA+AGG | 0.474975 | 2_1:+72740035 | Msa0223210:three_prime_UTR |
| GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | 2_1:+72738632 | Msa0223210:CDS |
| TAATAGTAATAAACTTATGA+TGG | 0.486847 | 2_1:-72740153 | None:intergenic |
| TACCGTATCAATATGTGTTG+TGG | 0.492632 | 2_1:+72739433 | Msa0223210:CDS |
| ATATTATTAGGGATATGTTA+AGG | 0.495652 | 2_1:+72740322 | Msa0223210:three_prime_UTR |
| TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | 2_1:+72737508 | Msa0223210:CDS |
| TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | 2_1:+72739724 | Msa0223210:CDS |
| GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | 2_1:+72739650 | Msa0223210:CDS |
| ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | 2_1:+72737499 | Msa0223210:CDS |
| CATTGTTTGGCTTACTCGGA+GGG | 0.524954 | 2_1:+72739034 | Msa0223210:CDS |
| ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | 2_1:-72737537 | None:intergenic |
| CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | 2_1:+72740002 | Msa0223210:CDS |
| TTCAAAATCATCTATAATCA+CGG | 0.533216 | 2_1:+72737274 | Msa0223210:five_prime_UTR |
| CTTTCCTATTACTCATTGCA+GGG | 0.535119 | 2_1:+72739463 | Msa0223210:CDS |
| GTACCATGAAATGCATTCTC+AGG | 0.536653 | 2_1:-72737597 | None:intergenic |
| TCAACATGTTGGCAAGTACA+TGG | 0.537008 | 2_1:-72738664 | None:intergenic |
| ACCCACAACACATATTGATA+CGG | 0.539971 | 2_1:-72739435 | None:intergenic |
| AAATCACGATCACGAGTGAC+GGG | 0.541550 | 2_1:-72737480 | None:intergenic |
| TGACAGATTCATTACTGGGA+TGG | 0.543513 | 2_1:+72739634 | Msa0223210:intron |
| TAAACTGAGGACGAATCAAA+AGG | 0.544513 | 2_1:-72739344 | None:intergenic |
| TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | 2_1:+72738583 | Msa0223210:CDS |
| AGAAATTCGTTGTTCTCAGT+CGG | 0.545619 | 2_1:+72740105 | Msa0223210:three_prime_UTR |
| CACATGCAAAATTTCTTGAA+GGG | 0.545781 | 2_1:+72740036 | Msa0223210:three_prime_UTR |
| AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | 2_1:-72737684 | None:intergenic |
| GACAATTTCGCTCATCTAGG+AGG | 0.549429 | 2_1:+72739291 | Msa0223210:CDS |
| TCTGCGTTATTCATACAAAC+GGG | 0.553724 | 2_1:+72738988 | Msa0223210:CDS |
| AAGAGAGCAAAGGAATGGAA+TGG | 0.554489 | 2_1:+72740243 | Msa0223210:three_prime_UTR |
| ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | 2_1:-72737525 | None:intergenic |
| ATACAAACGGGCATCTCAGT+TGG | 0.569101 | 2_1:+72739000 | Msa0223210:CDS |
| GAAATCACGATCACGAGTGA+CGG | 0.572889 | 2_1:-72737481 | None:intergenic |
| ACGACGAAGACGGAGACCCA+CGG | 0.573842 | 2_1:-72737446 | None:intergenic |
| ATCAAAAGAGAGCAAAGGAA+TGG | 0.574326 | 2_1:+72740238 | Msa0223210:three_prime_UTR |
| TCAACGGTGGTGCCACCATG+TGG | 0.575383 | 2_1:-72737405 | None:intergenic |
| CATGTGTATCTATCTATCCA+TGG | 0.577916 | 2_1:-72740019 | None:intergenic |
| AAATCATAATCATGAGTGGA+GGG | 0.582372 | 2_1:+72737376 | Msa0223210:exon |
| TTGTATATGGTTGCATGGTG+GGG | 0.585338 | 2_1:+72738637 | Msa0223210:CDS |
| AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | 2_1:-72737671 | None:intergenic |
| AAACAATTCTCCACAGACAA+AGG | 0.590975 | 2_1:+72737221 | Msa0223210:five_prime_UTR |
| ACAAATTCCTAACTTTGTCA+GGG | 0.594817 | 2_1:+72737171 | Msa0223210:five_prime_UTR |
| TGGTTCATGAACACGAAGGT+TGG | 0.597343 | 2_1:+72738603 | Msa0223210:CDS |
| AACAATGAAAATAATAACGT+TGG | 0.597447 | 2_1:-72737553 | None:intergenic |
| GGAACAAAGCATTTATTGTG+AGG | 0.597670 | 2_1:+72739745 | Msa0223210:CDS |
| TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | 2_1:+72737430 | Msa0223210:CDS |
| TCTTGTATATGGTTGCATGG+TGG | 0.604832 | 2_1:+72738635 | Msa0223210:CDS |
| GCATTGTTTGGCTTACTCGG+AGG | 0.606501 | 2_1:+72739033 | Msa0223210:CDS |
| GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | 2_1:+72737429 | Msa0223210:CDS |
| CGAAATTGTCAACATGTGGA+AGG | 0.611940 | 2_1:-72739278 | None:intergenic |
| TGAGCGAAATTGTCAACATG+TGG | 0.615330 | 2_1:-72739282 | None:intergenic |
| GGATTCGACGACGACGAAGA+CGG | 0.615599 | 2_1:-72737456 | None:intergenic |
| CAACGGTGGTGCCACCATGT+GGG | 0.618108 | 2_1:-72737404 | None:intergenic |
| AACATCACATGCATGAGCAA+TGG | 0.619993 | 2_1:+72739927 | Msa0223210:CDS |
| ACATGGTGGCACCACCGTTG+AGG | 0.621441 | 2_1:+72737407 | Msa0223210:CDS |
| AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | 2_1:-72737672 | None:intergenic |
| TGGCTTATCCATTTAAACTG+AGG | 0.633333 | 2_1:-72739357 | None:intergenic |
| AAAATCATAATCATGAGTGG+AGG | 0.633390 | 2_1:+72737375 | Msa0223210:exon |
| CTATTATCAAAAGAGAGCAA+AGG | 0.634615 | 2_1:+72740233 | Msa0223210:three_prime_UTR |
| TCACGATCACGAGTGACGGG+AGG | 0.634822 | 2_1:-72737477 | None:intergenic |
| ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | 2_1:+72739678 | Msa0223210:CDS |
| AGGATGAACCTTAACCTCAA+CGG | 0.671763 | 2_1:-72737421 | None:intergenic |
| TCATAATCATGAGTGGAGGG+AGG | 0.674267 | 2_1:+72737379 | Msa0223210:exon |
| GAAGACGGAGACCCACGGCG+AGG | 0.680052 | 2_1:-72737441 | None:intergenic |
| GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | 2_1:-72739966 | None:intergenic |
| AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | 2_1:+72737390 | Msa0223210:CDS |
| GCAACCATATACAAGAGACA+AGG | 0.709780 | 2_1:-72738628 | None:intergenic |
| AAAATCATCTATAATCACGG+AGG | 0.711965 | 2_1:+72737277 | Msa0223210:five_prime_UTR |
| ATGAACCTTAACCTCAACGG+TGG | 0.726735 | 2_1:-72737418 | None:intergenic |
| GGAGGGAGGAACCCACATGG+TGG | 0.736064 | 2_1:+72737393 | Msa0223210:CDS |
| AAAGTGGTTCATGAACACGA+AGG | 0.793505 | 2_1:+72738599 | Msa0223210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTATGATTTTTTTTTT+TGG | - | chr2_1:72737369-72737388 | None:intergenic | 10.0% |
| !!! | ATTATAGATGATTTTGAAAT+GGG | - | chr2_1:72737272-72737291 | None:intergenic | 15.0% |
| !! | AATGATATAAATACAGATAA+TGG | - | chr2_1:72738803-72738822 | None:intergenic | 15.0% |
| !! | AAGACAATAAATTATTTATC+AGG | - | chr2_1:72739144-72739163 | None:intergenic | 15.0% |
| !! | TAAATAATTTATTGTCTTTG+CGG | + | chr2_1:72739146-72739165 | Msa0223210:intron | 15.0% |
| !! | ATATTACCTTTAATATTCTT+AGG | + | chr2_1:72739518-72739537 | Msa0223210:intron | 15.0% |
| !!! | GTTTTTTCTTTTATCTAAAT+TGG | + | chr2_1:72739857-72739876 | Msa0223210:intron | 15.0% |
| !! | TAATAGTAATAAACTTATGA+TGG | - | chr2_1:72740156-72740175 | None:intergenic | 15.0% |
| !!! | GATTATAGATGATTTTGAAA+TGG | - | chr2_1:72737273-72737292 | None:intergenic | 20.0% |
| !! | TTCAAAATCATCTATAATCA+CGG | + | chr2_1:72737274-72737293 | Msa0223210:five_prime_UTR | 20.0% |
| !! | AAAAAAATCATAATCATGAG+TGG | + | chr2_1:72737372-72737391 | Msa0223210:exon | 20.0% |
| !! | AACAATGAAAATAATAACGT+TGG | - | chr2_1:72737556-72737575 | None:intergenic | 20.0% |
| !! | TACATTAATCAAGTTATGAT+TGG | + | chr2_1:72737790-72737809 | Msa0223210:intron | 20.0% |
| !! | ATGAACATGTGTTTATAAAT+GGG | + | chr2_1:72738133-72738152 | Msa0223210:intron | 20.0% |
| !!! | TTGTTTTTACATAAATGTTC+TGG | + | chr2_1:72738821-72738840 | Msa0223210:intron | 20.0% |
| !!! | AGTAGTATTTAATCTAAAGT+TGG | + | chr2_1:72739604-72739623 | Msa0223210:intron | 20.0% |
| !!! | AATTTTTTTTCCTTTGTCTG+TGG | - | chr2_1:72737234-72737253 | None:intergenic | 25.0% |
| !! | ATCTGAAATCTTTGTTCAAA+AGG | + | chr2_1:72737340-72737359 | Msa0223210:five_prime_UTR | 25.0% |
| !! | TCTGAAATCTTTGTTCAAAA+GGG | + | chr2_1:72737341-72737360 | Msa0223210:five_prime_UTR | 25.0% |
| ! | TTAATCAAGTTATGATTGGT+TGG | + | chr2_1:72737794-72737813 | Msa0223210:intron | 25.0% |
| ! | CATGAACATGTGTTTATAAA+TGG | + | chr2_1:72738132-72738151 | Msa0223210:intron | 25.0% |
| ! | TGAACATGTGTTTATAAATG+GGG | + | chr2_1:72738134-72738153 | Msa0223210:intron | 25.0% |
| ! | TTCATAGATTACATTCTCTA+TGG | + | chr2_1:72738375-72738394 | Msa0223210:intron | 25.0% |
| ! | GCTATTGCAAATACATAATT+TGG | - | chr2_1:72738454-72738473 | None:intergenic | 25.0% |
| ! | TATGTATTTGCAATAGCTAA+TGG | + | chr2_1:72738457-72738476 | Msa0223210:intron | 25.0% |
| !! | ACAGTACCAATCTTAATTTT+AGG | + | chr2_1:72738480-72738499 | Msa0223210:intron | 25.0% |
| ! | TATCTGCCTAAAATTAAGAT+TGG | - | chr2_1:72738489-72738508 | None:intergenic | 25.0% |
| !! | ATGTTGAGTCTTCTTTTTAT+TGG | + | chr2_1:72738680-72738699 | Msa0223210:CDS | 25.0% |
| !! | GTCTTCTTTTTATTGGAATT+CGG | + | chr2_1:72738687-72738706 | Msa0223210:CDS | 25.0% |
| !!! | TTTTAGTTCATTCACCTTAT+TGG | - | chr2_1:72739097-72739116 | None:intergenic | 25.0% |
| ! | CAAAATGGAAAGAAATAGAA+TGG | - | chr2_1:72739184-72739203 | None:intergenic | 25.0% |
| ! | GTTGTAATAAATTTAGCTGT+TGG | + | chr2_1:72739252-72739271 | Msa0223210:CDS | 25.0% |
| !!! | AATTTTGACAGATTCATTAC+TGG | + | chr2_1:72739629-72739648 | Msa0223210:intron | 25.0% |
| !!! | ATTTTGACAGATTCATTACT+GGG | + | chr2_1:72739630-72739649 | Msa0223210:intron | 25.0% |
| ! | GAACTAGAAAATAGAATTGA+TGG | - | chr2_1:72739796-72739815 | None:intergenic | 25.0% |
| ! | TTGTGTATATGATTCATTCT+TGG | + | chr2_1:72740074-72740093 | Msa0223210:three_prime_UTR | 25.0% |
| ! | AATGGAATGGAAGATATATT+TGG | + | chr2_1:72740256-72740275 | Msa0223210:three_prime_UTR | 25.0% |
| ! | AAATGCTGTCGAATATTATT+AGG | + | chr2_1:72740310-72740329 | Msa0223210:three_prime_UTR | 25.0% |
| ! | AATGCTGTCGAATATTATTA+GGG | + | chr2_1:72740311-72740330 | Msa0223210:three_prime_UTR | 25.0% |
| AACAAATTCCTAACTTTGTC+AGG | + | chr2_1:72737170-72737189 | Msa0223210:five_prime_UTR | 30.0% | |
| ACAAATTCCTAACTTTGTCA+GGG | + | chr2_1:72737171-72737190 | Msa0223210:five_prime_UTR | 30.0% | |
| AAAATCATCTATAATCACGG+AGG | + | chr2_1:72737277-72737296 | Msa0223210:five_prime_UTR | 30.0% | |
| AAAATCATAATCATGAGTGG+AGG | + | chr2_1:72737375-72737394 | Msa0223210:exon | 30.0% | |
| AAATCATAATCATGAGTGGA+GGG | + | chr2_1:72737376-72737395 | Msa0223210:exon | 30.0% | |
| AAAGAGAATCTTCCAAGAAA+AGG | - | chr2_1:72737633-72737652 | None:intergenic | 30.0% | |
| GAAAAAGAAAACTCACGTAA+AGG | - | chr2_1:72737694-72737713 | None:intergenic | 30.0% | |
| TGAGAATGAGTTTATTAGTG+TGG | + | chr2_1:72737915-72737934 | Msa0223210:intron | 30.0% | |
| ! | ACACTTTAGATGTCTAAGAT+TGG | + | chr2_1:72738068-72738087 | Msa0223210:intron | 30.0% |
| ! | CACTTTAGATGTCTAAGATT+GGG | + | chr2_1:72738069-72738088 | Msa0223210:intron | 30.0% |
| ! | ACTTTAGATGTCTAAGATTG+GGG | + | chr2_1:72738070-72738089 | Msa0223210:intron | 30.0% |
| GAACATGTGTTTATAAATGG+GGG | + | chr2_1:72738135-72738154 | Msa0223210:intron | 30.0% | |
| AACATGTGTTTATAAATGGG+GGG | + | chr2_1:72738136-72738155 | Msa0223210:intron | 30.0% | |
| !! | AGTTAAATTGATTCGAGCTA+AGG | + | chr2_1:72738165-72738184 | Msa0223210:intron | 30.0% |
| !! | GTTAAATTGATTCGAGCTAA+GGG | + | chr2_1:72738166-72738185 | Msa0223210:intron | 30.0% |
| TTAATATTTACTCCTTCGTC+CGG | - | chr2_1:72738221-72738240 | None:intergenic | 30.0% | |
| AACAAAAACGTGTGTTTGTA+AGG | + | chr2_1:72738275-72738294 | Msa0223210:intron | 30.0% | |
| AAAAACCTAATAGATGTGTG+AGG | + | chr2_1:72738316-72738335 | Msa0223210:intron | 30.0% | |
| AAAACCTAATAGATGTGTGA+GGG | + | chr2_1:72738317-72738336 | Msa0223210:intron | 30.0% | |
| GAATGTAATCTATGAATCAC+CGG | - | chr2_1:72738371-72738390 | None:intergenic | 30.0% | |
| ! | TTTTAGGCAGATATATCTCT+TGG | + | chr2_1:72738496-72738515 | Msa0223210:intron | 30.0% |
| ! | ATTTTCAGATTACAGGAGAT+GGG | + | chr2_1:72738560-72738579 | Msa0223210:intron | 30.0% |
| AAAAAGAAGACTCAACATGT+TGG | - | chr2_1:72738678-72738697 | None:intergenic | 30.0% | |
| CTTGAACAAGAATTTGGATT+TGG | + | chr2_1:72738710-72738729 | Msa0223210:CDS | 30.0% | |
| ! | ACAAGAATTTGGATTTGGTA+TGG | + | chr2_1:72738715-72738734 | Msa0223210:intron | 30.0% |
| !! | TACAGATAATGGAATACTGT+TGG | - | chr2_1:72738792-72738811 | None:intergenic | 30.0% |
| GGAAAGAAATAGAATGGTTT+AGG | - | chr2_1:72739178-72739197 | None:intergenic | 30.0% | |
| CAAAACATCATGAGACAAAA+TGG | - | chr2_1:72739199-72739218 | None:intergenic | 30.0% | |
| CCAAGTCCTAAGAATATTAA+AGG | - | chr2_1:72739527-72739546 | None:intergenic | 30.0% | |
| CCTTTAATATTCTTAGGACT+TGG | + | chr2_1:72739524-72739543 | Msa0223210:intron | 30.0% | |
| ACAATATTCTATGCAGACAA+CGG | + | chr2_1:72739887-72739906 | Msa0223210:intron | 30.0% | |
| ACACATGCAAAATTTCTTGA+AGG | + | chr2_1:72740035-72740054 | Msa0223210:three_prime_UTR | 30.0% | |
| CACATGCAAAATTTCTTGAA+GGG | + | chr2_1:72740036-72740055 | Msa0223210:three_prime_UTR | 30.0% | |
| AGTAATAAACTTATGATGGC+TGG | - | chr2_1:72740152-72740171 | None:intergenic | 30.0% | |
| CTATTATCAAAAGAGAGCAA+AGG | + | chr2_1:72740233-72740252 | Msa0223210:three_prime_UTR | 30.0% | |
| AAACAATTCTCCACAGACAA+AGG | + | chr2_1:72737221-72737240 | Msa0223210:five_prime_UTR | 35.0% | |
| ! | GAAATGGGTTTGAATCAGTT+AGG | - | chr2_1:72737257-72737276 | None:intergenic | 35.0% |
| ATTTCAGGCTCTTTAAGCAA+TGG | + | chr2_1:72737499-72737518 | Msa0223210:CDS | 35.0% | |
| TTTCAGGCTCTTTAAGCAAT+GGG | + | chr2_1:72737500-72737519 | Msa0223210:CDS | 35.0% | |
| ! | AAGAGAGGGTTTTCTTTAAG+TGG | - | chr2_1:72737660-72737679 | None:intergenic | 35.0% |
| CTTAAAGAAAACCCTCTCTT+TGG | + | chr2_1:72737660-72737679 | Msa0223210:CDS | 35.0% | |
| AAAACTCACGTAAAGGAAGA+AGG | - | chr2_1:72737687-72737706 | None:intergenic | 35.0% | |
| ! | CTTTAGATGTCTAAGATTGG+GGG | + | chr2_1:72738071-72738090 | Msa0223210:intron | 35.0% |
| TAATATTTACTCCTTCGTCC+GGG | - | chr2_1:72738220-72738239 | None:intergenic | 35.0% | |
| ! | TACTCGCATTTTCAGATTAC+AGG | + | chr2_1:72738553-72738572 | Msa0223210:intron | 35.0% |
| ! | CATTTTCAGATTACAGGAGA+TGG | + | chr2_1:72738559-72738578 | Msa0223210:intron | 35.0% |
| !! | TGCTCTAGAAGTAGATAAAG+TGG | + | chr2_1:72738583-72738602 | Msa0223210:CDS | 35.0% |
| ! | ATTCGGCTTGAACAAGAATT+TGG | + | chr2_1:72738704-72738723 | Msa0223210:CDS | 35.0% |
| ! | ATTTGGATTTGGTATGGTTC+TGG | + | chr2_1:72738721-72738740 | Msa0223210:intron | 35.0% |
| CGATATACTTGAACAATGCA+AGG | - | chr2_1:72738754-72738773 | None:intergenic | 35.0% | |
| !! | GATAATGGAATACTGTTGGT+CGG | - | chr2_1:72738788-72738807 | None:intergenic | 35.0% |
| AATCCAATTCTAACTGCGAA+AGG | - | chr2_1:72738931-72738950 | None:intergenic | 35.0% | |
| GGATTTCTCTATGTGATATC+TGG | + | chr2_1:72738946-72738965 | Msa0223210:CDS | 35.0% | |
| !! | CTCTATGTGATATCTGGTTT+TGG | + | chr2_1:72738952-72738971 | Msa0223210:CDS | 35.0% |
| !!! | TATGTGATATCTGGTTTTGG+AGG | + | chr2_1:72738955-72738974 | Msa0223210:CDS | 35.0% |
| !!! | ATGTGATATCTGGTTTTGGA+GGG | + | chr2_1:72738956-72738975 | Msa0223210:CDS | 35.0% |
| GTCTGCGTTATTCATACAAA+CGG | + | chr2_1:72738987-72739006 | Msa0223210:CDS | 35.0% | |
| TCTGCGTTATTCATACAAAC+GGG | + | chr2_1:72738988-72739007 | Msa0223210:CDS | 35.0% | |
| TCTCAGAGCTCTTCATTAAT+TGG | + | chr2_1:72739061-72739080 | Msa0223210:CDS | 35.0% | |
| TTGGACGATATATGCCAATA+AGG | + | chr2_1:72739080-72739099 | Msa0223210:CDS | 35.0% | |
| TAAACTGAGGACGAATCAAA+AGG | - | chr2_1:72739347-72739366 | None:intergenic | 35.0% | |
| TGATTCGTCCTCAGTTTAAA+TGG | + | chr2_1:72739349-72739368 | Msa0223210:CDS | 35.0% | |
| TGGCTTATCCATTTAAACTG+AGG | - | chr2_1:72739360-72739379 | None:intergenic | 35.0% | |
| ATCCAGATTTAGACTGTTGT+TGG | - | chr2_1:72739380-72739399 | None:intergenic | 35.0% | |
| TACCGTATCAATATGTGTTG+TGG | + | chr2_1:72739433-72739452 | Msa0223210:CDS | 35.0% | |
| ACCGTATCAATATGTGTTGT+GGG | + | chr2_1:72739434-72739453 | Msa0223210:CDS | 35.0% | |
| ACCCACAACACATATTGATA+CGG | - | chr2_1:72739438-72739457 | None:intergenic | 35.0% | |
| TCTTTCCTATTACTCATTGC+AGG | + | chr2_1:72739462-72739481 | Msa0223210:CDS | 35.0% | |
| CTTTCCTATTACTCATTGCA+GGG | + | chr2_1:72739463-72739482 | Msa0223210:CDS | 35.0% | |
| ! | GGAACAAAGCATTTATTGTG+AGG | + | chr2_1:72739745-72739764 | Msa0223210:CDS | 35.0% |
| CATGTGTATCTATCTATCCA+TGG | - | chr2_1:72740022-72740041 | None:intergenic | 35.0% | |
| AGAAATTCGTTGTTCTCAGT+CGG | + | chr2_1:72740105-72740124 | Msa0223210:three_prime_UTR | 35.0% | |
| ATCAAAAGAGAGCAAAGGAA+TGG | + | chr2_1:72740238-72740257 | Msa0223210:three_prime_UTR | 35.0% | |
| AACAAGACCCTGACAAAGTT+AGG | - | chr2_1:72737181-72737200 | None:intergenic | 40.0% | |
| ! | TAACTTTGTCAGGGTCTTGT+TGG | + | chr2_1:72737180-72737199 | Msa0223210:five_prime_UTR | 40.0% |
| AGGATGAACCTTAACCTCAA+CGG | - | chr2_1:72737424-72737443 | None:intergenic | 40.0% | |
| ! | TCTTTAAGCAATGGGTTCCA+TGG | + | chr2_1:72737508-72737527 | Msa0223210:CDS | 40.0% |
| ACAAAAGTTGGAACAAGCCA+TGG | - | chr2_1:72737528-72737547 | None:intergenic | 40.0% | |
| ACGTTGGCAAACACAAAAGT+TGG | - | chr2_1:72737540-72737559 | None:intergenic | 40.0% | |
| TGTCCTGAGAATGCATTTCA+TGG | + | chr2_1:72737594-72737613 | Msa0223210:CDS | 40.0% | |
| GTACCATGAAATGCATTCTC+AGG | - | chr2_1:72737600-72737619 | None:intergenic | 40.0% | |
| !! | ACTTGTGTTGCTCCTTTTCT+TGG | + | chr2_1:72737618-72737637 | Msa0223210:CDS | 40.0% |
| !! | GCCAGTTTTGTGAATGAGTT+AGG | + | chr2_1:72737956-72737975 | Msa0223210:intron | 40.0% |
| GCCTAACTCATTCACAAAAC+TGG | - | chr2_1:72737960-72737979 | None:intergenic | 40.0% | |
| ! | ATGTCTAAGATTGGGGGTAA+GGG | + | chr2_1:72738077-72738096 | Msa0223210:intron | 40.0% |
| TGTGTTTATAAATGGGGGGT+TGG | + | chr2_1:72738140-72738159 | Msa0223210:intron | 40.0% | |
| GTGTTTATAAATGGGGGGTT+GGG | + | chr2_1:72738141-72738160 | Msa0223210:intron | 40.0% | |
| GTGTGTTTGTAAGGATGCAT+AGG | + | chr2_1:72738284-72738303 | Msa0223210:intron | 40.0% | |
| ACAACCCTCACACATCTATT+AGG | - | chr2_1:72738324-72738343 | None:intergenic | 40.0% | |
| AAAGTGGTTCATGAACACGA+AGG | + | chr2_1:72738599-72738618 | Msa0223210:CDS | 40.0% | |
| GCAACCATATACAAGAGACA+AGG | - | chr2_1:72738631-72738650 | None:intergenic | 40.0% | |
| GTCTCTTGTATATGGTTGCA+TGG | + | chr2_1:72738632-72738651 | Msa0223210:CDS | 40.0% | |
| TCTTGTATATGGTTGCATGG+TGG | + | chr2_1:72738635-72738654 | Msa0223210:CDS | 40.0% | |
| CTTGTATATGGTTGCATGGT+GGG | + | chr2_1:72738636-72738655 | Msa0223210:CDS | 40.0% | |
| TTGTATATGGTTGCATGGTG+GGG | + | chr2_1:72738637-72738656 | Msa0223210:CDS | 40.0% | |
| TCAACATGTTGGCAAGTACA+TGG | - | chr2_1:72738667-72738686 | None:intergenic | 40.0% | |
| TAACTGCGAAAGGACAAGAA+AGG | - | chr2_1:72738921-72738940 | None:intergenic | 40.0% | |
| TGTCCTTTCGCAGTTAGAAT+TGG | + | chr2_1:72738925-72738944 | Msa0223210:intron | 40.0% | |
| ! | GTCTCATGATGTTTTGCAGA+TGG | + | chr2_1:72739203-72739222 | Msa0223210:intron | 40.0% |
| CGAAATTGTCAACATGTGGA+AGG | - | chr2_1:72739281-72739300 | None:intergenic | 40.0% | |
| TGAGCGAAATTGTCAACATG+TGG | - | chr2_1:72739285-72739304 | None:intergenic | 40.0% | |
| GTTGACAATTTCGCTCATCT+AGG | + | chr2_1:72739288-72739307 | Msa0223210:CDS | 40.0% | |
| AGCCAACAACAGTCTAAATC+TGG | + | chr2_1:72739375-72739394 | Msa0223210:CDS | 40.0% | |
| CTTACCCTGCAATGAGTAAT+AGG | - | chr2_1:72739470-72739489 | None:intergenic | 40.0% | |
| TGACAGATTCATTACTGGGA+TGG | + | chr2_1:72739634-72739653 | Msa0223210:intron | 40.0% | |
| GTTGTGTTCCTACCTCAAAA+TGG | + | chr2_1:72739714-72739733 | Msa0223210:CDS | 40.0% | |
| !!! | TGACAACTCCATTTTGAGGT+AGG | - | chr2_1:72739725-72739744 | None:intergenic | 40.0% |
| TACCTCAAAATGGAGTTGTC+AGG | + | chr2_1:72739724-72739743 | Msa0223210:CDS | 40.0% | |
| ! | TTCCTGACAACTCCATTTTG+AGG | - | chr2_1:72739729-72739748 | None:intergenic | 40.0% |
| TCTATGCAGACAACGGAATT+CGG | + | chr2_1:72739894-72739913 | Msa0223210:intron | 40.0% | |
| AACATCACATGCATGAGCAA+TGG | + | chr2_1:72739927-72739946 | Msa0223210:CDS | 40.0% | |
| AAGAGAGCAAAGGAATGGAA+TGG | + | chr2_1:72740243-72740262 | Msa0223210:three_prime_UTR | 40.0% | |
| TCATAATCATGAGTGGAGGG+AGG | + | chr2_1:72737379-72737398 | Msa0223210:exon | 45.0% | |
| ATGAACCTTAACCTCAACGG+TGG | - | chr2_1:72737421-72737440 | None:intergenic | 45.0% | |
| AAATCACGATCACGAGTGAC+GGG | - | chr2_1:72737483-72737502 | None:intergenic | 45.0% | |
| GAAATCACGATCACGAGTGA+CGG | - | chr2_1:72737484-72737503 | None:intergenic | 45.0% | |
| TCACTCGTGATCGTGATTTC+AGG | + | chr2_1:72737484-72737503 | Msa0223210:CDS | 45.0% | |
| AGGAAGAAGGACCAAAGAGA+GGG | - | chr2_1:72737674-72737693 | None:intergenic | 45.0% | |
| AAGGAAGAAGGACCAAAGAG+AGG | - | chr2_1:72737675-72737694 | None:intergenic | 45.0% | |
| ! | CATCTAAAGTGTGACTCGTG+TGG | - | chr2_1:72738060-72738079 | None:intergenic | 45.0% |
| ! | GATGTCTAAGATTGGGGGTA+AGG | + | chr2_1:72738076-72738095 | Msa0223210:intron | 45.0% |
| CGAGCTAAGGGATAAGAAGT+TGG | + | chr2_1:72738178-72738197 | Msa0223210:intron | 45.0% | |
| GCTAAGGGATAAGAAGTTGG+AGG | + | chr2_1:72738181-72738200 | Msa0223210:intron | 45.0% | |
| !! | GGAGGTTCTAAGTTCAAACC+CGG | + | chr2_1:72738199-72738218 | Msa0223210:intron | 45.0% |
| TCTTGTGTCTGTGTCTCTAC+CGG | + | chr2_1:72738349-72738368 | Msa0223210:intron | 45.0% | |
| TGGTTCATGAACACGAAGGT+TGG | + | chr2_1:72738603-72738622 | Msa0223210:CDS | 45.0% | |
| ATACAAACGGGCATCTCAGT+TGG | + | chr2_1:72739000-72739019 | Msa0223210:CDS | 45.0% | |
| ! | GGTGCATTGTTTGGCTTACT+CGG | + | chr2_1:72739030-72739049 | Msa0223210:CDS | 45.0% |
| ! | CATTGTTTGGCTTACTCGGA+GGG | + | chr2_1:72739034-72739053 | Msa0223210:CDS | 45.0% |
| GACAATTTCGCTCATCTAGG+AGG | + | chr2_1:72739291-72739310 | Msa0223210:CDS | 45.0% | |
| TTCGCTCATCTAGGAGGATT+TGG | + | chr2_1:72739297-72739316 | Msa0223210:CDS | 45.0% | |
| ! | CATCTAGGAGGATTTGGTTC+TGG | + | chr2_1:72739303-72739322 | Msa0223210:CDS | 45.0% |
| !! | TTTGGTTCTGGCTTTCTGCT+TGG | + | chr2_1:72739315-72739334 | Msa0223210:CDS | 45.0% |
| ACTTGAATGAACGTTGCTCG+TGG | + | chr2_1:72739678-72739697 | Msa0223210:CDS | 45.0% | |
| GAAGAGCTAGTATTCGACAG+AGG | - | chr2_1:72739969-72739988 | None:intergenic | 45.0% | |
| CTTTGTTCGCAACTTTGCCA+TGG | + | chr2_1:72740002-72740021 | Msa0223210:CDS | 45.0% | |
| TTGTTCTCAGTCGGCAATGA+TGG | + | chr2_1:72740114-72740133 | Msa0223210:three_prime_UTR | 45.0% | |
| !! | GTCAGGGTCTTGTTGGATTC+TGG | + | chr2_1:72737187-72737206 | Msa0223210:five_prime_UTR | 50.0% |
| TTAAGGTTCATCCTCGCCGT+GGG | + | chr2_1:72737430-72737449 | Msa0223210:CDS | 50.0% | |
| ! | GATAATGGTGGCCAGATAGC+AGG | - | chr2_1:72738034-72738053 | None:intergenic | 50.0% |
| GCTATCTGGCCACCATTATC+AGG | + | chr2_1:72738034-72738053 | Msa0223210:intron | 50.0% | |
| TGACTCGTGTGGCCTGATAA+TGG | - | chr2_1:72738049-72738068 | None:intergenic | 50.0% | |
| CTAAGTTCAAACCCGGACGA+AGG | + | chr2_1:72738206-72738225 | Msa0223210:intron | 50.0% | |
| GGCGCCTTGTCTCTTGTATA+TGG | + | chr2_1:72738624-72738643 | Msa0223210:CDS | 50.0% | |
| GGTGCATCTGGTGCATTGTT+TGG | + | chr2_1:72739021-72739040 | Msa0223210:CDS | 50.0% | |
| ! | GCATTGTTTGGCTTACTCGG+AGG | + | chr2_1:72739033-72739052 | Msa0223210:CDS | 50.0% |
| ! | GGGATGGTTCTACTCTTTCG+AGG | + | chr2_1:72739650-72739669 | Msa0223210:CDS | 50.0% |
| !! | GGGTCTTGTTGGATTCTGGC+TGG | + | chr2_1:72737191-72737210 | Msa0223210:five_prime_UTR | 55.0% |
| TGGCACCACCGTTGAGGTTA+AGG | + | chr2_1:72737413-72737432 | Msa0223210:CDS | 55.0% | |
| GTTAAGGTTCATCCTCGCCG+TGG | + | chr2_1:72737429-72737448 | Msa0223210:CDS | 55.0% | |
| GGATTCGACGACGACGAAGA+CGG | - | chr2_1:72737459-72737478 | None:intergenic | 55.0% | |
| GCAGGCGGTTCAATGGATCT+TGG | - | chr2_1:72738016-72738035 | None:intergenic | 55.0% | |
| CCAGATAGCAGGCGGTTCAA+TGG | - | chr2_1:72738023-72738042 | None:intergenic | 55.0% | |
| CCATTGAACCGCCTGCTATC+TGG | + | chr2_1:72738020-72738039 | Msa0223210:intron | 55.0% | |
| AATGGTGGCCAGATAGCAGG+CGG | - | chr2_1:72738031-72738050 | None:intergenic | 55.0% | |
| !! | CTCGTGTGGCCTGATAATGG+TGG | - | chr2_1:72738046-72738065 | None:intergenic | 55.0% |
| ! | GGCATCTCAGTTGGTGCATC+TGG | + | chr2_1:72739009-72739028 | Msa0223210:CDS | 55.0% |
| AGTGGAGGGAGGAACCCACA+TGG | + | chr2_1:72737390-72737409 | Msa0223210:CDS | 60.0% | |
| !! | CAACGGTGGTGCCACCATGT+GGG | - | chr2_1:72737407-72737426 | None:intergenic | 60.0% |
| !! | TCAACGGTGGTGCCACCATG+TGG | - | chr2_1:72737408-72737427 | None:intergenic | 60.0% |
| ACATGGTGGCACCACCGTTG+AGG | + | chr2_1:72737407-72737426 | Msa0223210:CDS | 60.0% | |
| ACGACGAAGACGGAGACCCA+CGG | - | chr2_1:72737449-72737468 | None:intergenic | 60.0% | |
| ! | TCACGATCACGAGTGACGGG+AGG | - | chr2_1:72737480-72737499 | None:intergenic | 60.0% |
| GGAGGGAGGAACCCACATGG+TGG | + | chr2_1:72737393-72737412 | Msa0223210:CDS | 65.0% | |
| GAAGACGGAGACCCACGGCG+AGG | - | chr2_1:72737444-72737463 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72737130 | 72740344 | 72737130 | ID=Msa0223210;Name=Msa0223210 |
| chr2_1 | mRNA | 72737130 | 72740344 | 72737130 | ID=Msa0223210-mRNA-1;Parent=Msa0223210;Name=Msa0223210-mRNA-1;_AED=0.11;_eAED=0.11;_QI=257|1|1|1|1|1|6|316|384 |
| chr2_1 | exon | 72737130 | 72737697 | 72737130 | ID=Msa0223210-mRNA-1:exon:21051;Parent=Msa0223210-mRNA-1 |
| chr2_1 | exon | 72738568 | 72738731 | 72738568 | ID=Msa0223210-mRNA-1:exon:21052;Parent=Msa0223210-mRNA-1 |
| chr2_1 | exon | 72738938 | 72739101 | 72738938 | ID=Msa0223210-mRNA-1:exon:21053;Parent=Msa0223210-mRNA-1 |
| chr2_1 | exon | 72739222 | 72739484 | 72739222 | ID=Msa0223210-mRNA-1:exon:21054;Parent=Msa0223210-mRNA-1 |
| chr2_1 | exon | 72739640 | 72739766 | 72739640 | ID=Msa0223210-mRNA-1:exon:21055;Parent=Msa0223210-mRNA-1 |
| chr2_1 | exon | 72739903 | 72740344 | 72739903 | ID=Msa0223210-mRNA-1:exon:21056;Parent=Msa0223210-mRNA-1 |
| chr2_1 | five_prime_UTR | 72737130 | 72737386 | 72737130 | ID=Msa0223210-mRNA-1:five_prime_utr;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72737387 | 72737697 | 72737387 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72738568 | 72738731 | 72738568 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72738938 | 72739101 | 72738938 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72739222 | 72739484 | 72739222 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72739640 | 72739766 | 72739640 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | CDS | 72739903 | 72740028 | 72739903 | ID=Msa0223210-mRNA-1:cds;Parent=Msa0223210-mRNA-1 |
| chr2_1 | three_prime_UTR | 72740029 | 72740344 | 72740029 | ID=Msa0223210-mRNA-1:three_prime_utr;Parent=Msa0223210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
