Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339650 | XP_003597357.1 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339650 | sp|Q0WQX7|RBL1_ARATH | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.23e-174 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0339650 | 0.801064 | 1.073869e-48 | -8.615850e-47 |
| Msa0001960 | Msa0339650 | 0.809720 | 1.645452e-50 | -8.615850e-47 |
| Msa0005890 | Msa0339650 | 0.820931 | 5.284968e-53 | -8.615850e-47 |
| Msa0030370 | Msa0339650 | 0.807790 | 4.256202e-50 | -8.615850e-47 |
| Msa0049790 | Msa0339650 | 0.818841 | 1.587795e-52 | -8.615850e-47 |
| Msa0081520 | Msa0339650 | 0.816603 | 5.077928e-52 | -8.615850e-47 |
| Msa0081570 | Msa0339650 | 0.813880 | 2.046211e-51 | -8.615850e-47 |
| Msa0094780 | Msa0339650 | 0.825226 | 5.261807e-54 | -8.615850e-47 |
| Msa0140280 | Msa0339650 | 0.809006 | 2.342175e-50 | -8.615850e-47 |
| Msa0173730 | Msa0339650 | 0.805788 | 1.127282e-49 | -8.615850e-47 |
| Msa0174450 | Msa0339650 | 0.814252 | 1.693407e-51 | -8.615850e-47 |
| Msa0190570 | Msa0339650 | 0.801663 | 8.096018e-49 | -8.615850e-47 |
| Msa0223210 | Msa0339650 | 0.975963 | 6.303732e-141 | -8.615850e-47 |
| Msa0225100 | Msa0339650 | 0.823085 | 1.674965e-53 | -8.615850e-47 |
| Msa0225460 | Msa0339650 | 0.838095 | 3.524013e-57 | -8.615850e-47 |
| Msa0225680 | Msa0339650 | 0.838565 | 2.666173e-57 | -8.615850e-47 |
| Msa0225860 | Msa0339650 | 0.851201 | 1.035357e-60 | -8.615850e-47 |
| Msa0242590 | Msa0339650 | 0.803191 | 3.922623e-49 | -8.615850e-47 |
| Msa0260510 | Msa0339650 | 0.826451 | 2.693493e-54 | -8.615850e-47 |
| Msa0264400 | Msa0339650 | 0.943249 | 1.690822e-102 | -8.615850e-47 |
| Msa0265850 | Msa0339650 | 0.802008 | 6.876904e-49 | -8.615850e-47 |
| Msa0266180 | Msa0339650 | 0.819059 | 1.416910e-52 | -8.615850e-47 |
| Msa0267110 | Msa0339650 | 0.807228 | 5.599553e-50 | -8.615850e-47 |
| Msa0271880 | Msa0339650 | 0.806656 | 7.397666e-50 | -8.615850e-47 |
| Msa0287740 | Msa0339650 | 0.811089 | 8.333265e-51 | -8.615850e-47 |
| Msa0298470 | Msa0339650 | 0.830214 | 3.331610e-55 | -8.615850e-47 |
| Msa0300270 | Msa0339650 | 0.800309 | 1.531064e-48 | -8.615850e-47 |
| Msa0300320 | Msa0339650 | 0.811366 | 7.256279e-51 | -8.615850e-47 |
| Msa0302290 | Msa0339650 | 0.889089 | 3.308360e-73 | -8.615850e-47 |
| Msa0310850 | Msa0339650 | 0.813286 | 2.764404e-51 | -8.615850e-47 |
| Msa0330380 | Msa0339650 | 0.817471 | 3.240842e-52 | -8.615850e-47 |
| Msa0337700 | Msa0339650 | 0.805397 | 1.361681e-49 | -8.615850e-47 |
| Msa0339650 | Msa0340500 | 0.803750 | 3.003345e-49 | -8.615850e-47 |
| Msa0339650 | Msa0341540 | 0.801107 | 1.052431e-48 | -8.615850e-47 |
| Msa0339650 | Msa0369790 | 0.807721 | 4.401040e-50 | -8.615850e-47 |
| Msa0339650 | Msa0380670 | 0.801040 | 1.086008e-48 | -8.615850e-47 |
| Msa0339650 | Msa0428370 | 0.810806 | 9.598275e-51 | -8.615850e-47 |
| Msa0339650 | Msa0430300 | 0.812625 | 3.859073e-51 | -8.615850e-47 |
| Msa0339650 | Msa0464000 | 0.804486 | 2.110619e-49 | -8.615850e-47 |
| Msa0339650 | Msa0474730 | 0.802444 | 5.594496e-49 | -8.615850e-47 |
| Msa0339650 | Msa0483100 | 0.808488 | 3.021843e-50 | -8.615850e-47 |
| Msa0339650 | Msa0484380 | 0.828329 | 9.553296e-55 | -8.615850e-47 |
| Msa0339650 | Msa0548470 | 0.815427 | 9.297191e-52 | -8.615850e-47 |
| Msa0339650 | Msa0557460 | 0.805160 | 1.526145e-49 | -8.615850e-47 |
| Msa0339650 | Msa0571290 | 0.822236 | 2.639115e-53 | -8.615850e-47 |
| Msa0339650 | Msa0580370 | 0.832022 | 1.198436e-55 | -8.615850e-47 |
| Msa0339650 | Msa0582480 | 0.814177 | 1.759542e-51 | -8.615850e-47 |
| Msa0339650 | Msa0586220 | 0.825993 | 3.461608e-54 | -8.615850e-47 |
| Msa0339650 | Msa0597790 | 0.805305 | 1.423275e-49 | -8.615850e-47 |
| Msa0339650 | Msa0600930 | 0.813024 | 3.156010e-51 | -8.615850e-47 |
| Msa0339650 | Msa0624900 | 0.819243 | 1.286212e-52 | -8.615850e-47 |
| Msa0339650 | Msa0626450 | 0.837014 | 6.671618e-57 | -8.615850e-47 |
| Msa0339650 | Msa0626490 | 0.834143 | 3.553839e-56 | -8.615850e-47 |
| Msa0339650 | Msa0644410 | 0.814575 | 1.436890e-51 | -8.615850e-47 |
| Msa0339650 | Msa0664090 | 0.831258 | 1.848506e-55 | -8.615850e-47 |
| Msa0339650 | Msa0664150 | 0.810214 | 1.288028e-50 | -8.615850e-47 |
| Msa0339650 | Msa0664600 | 0.837148 | 6.165323e-57 | -8.615850e-47 |
| Msa0339650 | Msa0670100 | 0.816176 | 6.327832e-52 | -8.615850e-47 |
| Msa0339650 | Msa0721080 | 0.805173 | 1.516904e-49 | -8.615850e-47 |
| Msa0339650 | Msa0733390 | 0.805740 | 1.153766e-49 | -8.615850e-47 |
| Msa0339650 | Msa0741220 | 0.816844 | 4.485414e-52 | -8.615850e-47 |
| Msa0339650 | Msa0766350 | 0.800215 | 1.600074e-48 | -8.615850e-47 |
| Msa0339650 | Msa0783530 | 0.804030 | 2.626217e-49 | -8.615850e-47 |
| Msa0339650 | Msa0795870 | 0.841371 | 4.948588e-58 | -8.615850e-47 |
| Msa0339650 | Msa0833650 | 0.838822 | 2.289165e-57 | -8.615850e-47 |
| Msa0339650 | Msa0861510 | 0.800190 | 1.619073e-48 | -8.615850e-47 |
| Msa0339650 | Msa0861600 | 0.805164 | 1.523356e-49 | -8.615850e-47 |
| Msa0339650 | Msa0902510 | 0.800589 | 1.342612e-48 | -8.615850e-47 |
| Msa0339650 | Msa0903070 | 0.812426 | 4.266106e-51 | -8.615850e-47 |
| Msa0339650 | Msa0967380 | 0.810010 | 1.425369e-50 | -8.615850e-47 |
| Msa0339650 | Msa0967870 | 0.811550 | 6.620653e-51 | -8.615850e-47 |
| Msa0339650 | Msa1019430 | 0.821736 | 3.445895e-53 | -8.615850e-47 |
| Msa0339650 | Msa1019470 | 0.827215 | 1.769424e-54 | -8.615850e-47 |
| Msa0339650 | Msa1021210 | 0.800487 | 1.408434e-48 | -8.615850e-47 |
| Msa0339650 | Msa1027990 | 0.800441 | 1.439278e-48 | -8.615850e-47 |
| Msa0339650 | Msa1028280 | 0.812070 | 5.101093e-51 | -8.615850e-47 |
| Msa0339650 | Msa1044470 | 0.836023 | 1.192745e-56 | -8.615850e-47 |
| Msa0339650 | Msa1085330 | 0.800549 | 1.367810e-48 | -8.615850e-47 |
| Msa0339650 | Msa1132840 | 0.830626 | 2.641806e-55 | -8.615850e-47 |
| Msa0339650 | Msa1145810 | 0.801884 | 7.292356e-49 | -8.615850e-47 |
| Msa0339650 | Msa1147740 | 0.800006 | 1.764265e-48 | -8.615850e-47 |
| Msa0339650 | Msa1155170 | -0.800602 | 1.334350e-48 | -8.615850e-47 |
| Msa0339650 | Msa1186020 | 0.816299 | 5.940917e-52 | -8.615850e-47 |
| Msa0339650 | Msa1192570 | 0.814044 | 1.882382e-51 | -8.615850e-47 |
| Msa0339650 | Msa1198250 | 0.810201 | 1.296574e-50 | -8.615850e-47 |
| Msa0339650 | Msa1200890 | 0.808282 | 3.343141e-50 | -8.615850e-47 |
| Msa0339650 | Msa1208160 | 0.803531 | 3.334083e-49 | -8.615850e-47 |
| Msa0339650 | Msa1208430 | 0.820750 | 5.816572e-53 | -8.615850e-47 |
| Msa0339650 | Msa1208950 | 0.820234 | 7.639083e-53 | -8.615850e-47 |
| Msa0339650 | Msa1215870 | 0.816244 | 6.109621e-52 | -8.615850e-47 |
| Msa0339650 | Msa1225860 | -0.801459 | 8.914015e-49 | -8.615850e-47 |
| Msa0339650 | Msa1251930 | 0.807924 | 3.985828e-50 | -8.615850e-47 |
| Msa0339650 | Msa1267770 | 0.808002 | 3.834894e-50 | -8.615850e-47 |
| Msa0339650 | Msa1267900 | 0.803696 | 3.082089e-49 | -8.615850e-47 |
| Msa0339650 | Msa1269480 | 0.805865 | 1.085915e-49 | -8.615850e-47 |
| Msa0339650 | Msa1277150 | 0.800622 | 1.321728e-48 | -8.615850e-47 |
| Msa0339650 | Msa1298370 | 0.826659 | 2.402401e-54 | -8.615850e-47 |
| Msa0339650 | Msa1307630 | 0.811336 | 7.367314e-51 | -8.615850e-47 |
| Msa0339650 | Msa1320670 | 0.813169 | 2.931947e-51 | -8.615850e-47 |
| Msa0339650 | Msa1330420 | 0.805166 | 1.522111e-49 | -8.615850e-47 |
| Msa0339650 | Msa1348090 | 0.820799 | 5.666301e-53 | -8.615850e-47 |
| Msa0339650 | Msa1356830 | 0.810828 | 9.490838e-51 | -8.615850e-47 |
| Msa0339650 | Msa1392580 | 0.821915 | 3.132141e-53 | -8.615850e-47 |
| Msa0339650 | Msa1395190 | 0.806825 | 6.815327e-50 | -8.615850e-47 |
| Msa0339650 | Msa1397400 | 0.830939 | 2.213730e-55 | -8.615850e-47 |
| Msa0339650 | Msa1420950 | 0.832244 | 1.056131e-55 | -8.615850e-47 |
| Msa0339650 | Msa1422420 | 0.800122 | 1.671215e-48 | -8.615850e-47 |
| Msa0339650 | Msa1427200 | 0.969126 | 1.148327e-129 | -8.615850e-47 |
| Msa0339650 | Msa1437640 | 0.814690 | 1.354782e-51 | -8.615850e-47 |
| Msa0339650 | Msa1440880 | 0.805747 | 1.149734e-49 | -8.615850e-47 |
| Msa0339650 | Msa1440960 | 0.841894 | 3.602653e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339650 | MtrunA17_Chr2g0328271 | 96.875 | 384 | 11 | 1 | 1 | 384 | 1 | 383 | 0.0 | 763 |
| Msa0339650 | MtrunA17_Chr4g0009841 | 62.824 | 347 | 126 | 2 | 37 | 383 | 34 | 377 | 1.18e-168 | 476 |
| Msa0339650 | MtrunA17_Chr7g0238701 | 59.178 | 365 | 140 | 4 | 23 | 383 | 4 | 363 | 2.51e-150 | 429 |
| Msa0339650 | MtrunA17_Chr6g0472501 | 59.412 | 340 | 122 | 3 | 1 | 338 | 1 | 326 | 2.14e-127 | 369 |
| Msa0339650 | MtrunA17_Chr1g0203681 | 53.191 | 329 | 135 | 3 | 16 | 339 | 5 | 319 | 2.59e-113 | 333 |
| Msa0339650 | MtrunA17_Chr2g0332941 | 55.636 | 275 | 114 | 3 | 44 | 312 | 30 | 302 | 5.47e-99 | 296 |
| Msa0339650 | MtrunA17_Chr3g0115331 | 39.257 | 377 | 216 | 5 | 13 | 382 | 9 | 379 | 2.35e-87 | 269 |
| Msa0339650 | MtrunA17_Chr2g0322601 | 39.500 | 200 | 94 | 5 | 142 | 340 | 1 | 174 | 1.15e-32 | 120 |
| Msa0339650 | MtrunA17_Chr2g0322611 | 48.913 | 92 | 47 | 0 | 99 | 190 | 2 | 93 | 3.72e-23 | 92.8 |
| Msa0339650 | MtrunA17_Chr8g0392201 | 38.542 | 96 | 43 | 2 | 225 | 320 | 28 | 107 | 1.36e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339650 | AT2G29050.1 | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 1.25e-175 | 494 |
| Msa0339650 | AT3G53780.2 | 61.318 | 349 | 127 | 2 | 35 | 383 | 54 | 394 | 1.10e-153 | 439 |
| Msa0339650 | AT1G63120.1 | 63.946 | 294 | 98 | 2 | 44 | 335 | 30 | 317 | 1.09e-128 | 372 |
| Msa0339650 | AT2G29050.2 | 58.104 | 327 | 106 | 3 | 6 | 304 | 15 | 338 | 4.91e-126 | 367 |
| Msa0339650 | AT5G07250.1 | 60.061 | 328 | 116 | 3 | 21 | 337 | 22 | 345 | 5.70e-125 | 364 |
| Msa0339650 | AT3G53780.1 | 61.957 | 276 | 99 | 1 | 108 | 383 | 1 | 270 | 3.57e-124 | 359 |
| Msa0339650 | AT1G12750.4 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0339650 | AT1G12750.7 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0339650 | AT1G12750.6 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0339650 | AT1G12750.3 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0339650 | AT1G12750.1 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.25e-122 | 355 |
| Msa0339650 | AT3G53780.3 | 62.547 | 267 | 92 | 2 | 35 | 301 | 54 | 312 | 2.33e-114 | 336 |
| Msa0339650 | AT1G52580.1 | 54.209 | 297 | 127 | 6 | 20 | 311 | 4 | 296 | 4.39e-97 | 292 |
| Msa0339650 | AT1G77860.2 | 44.083 | 338 | 184 | 4 | 48 | 382 | 49 | 384 | 1.12e-96 | 293 |
| Msa0339650 | AT4G23070.1 | 55.326 | 291 | 125 | 2 | 44 | 334 | 28 | 313 | 1.51e-93 | 283 |
| Msa0339650 | AT5G07250.2 | 49.695 | 328 | 103 | 4 | 21 | 337 | 22 | 298 | 1.55e-88 | 270 |
| Msa0339650 | AT1G77860.1 | 45.151 | 299 | 159 | 4 | 48 | 343 | 49 | 345 | 1.28e-84 | 261 |
| Msa0339650 | AT1G12750.5 | 60.326 | 184 | 71 | 1 | 33 | 214 | 6 | 189 | 2.42e-76 | 235 |
| Msa0339650 | AT1G12750.2 | 59.893 | 187 | 73 | 1 | 33 | 217 | 6 | 192 | 4.45e-76 | 234 |
Find 116 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGGGTCTTGTTGGATTC+TGG | 0.167687 | 2_4:-60918003 | Msa0339650:five_prime_UTR |
| ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | 2_4:-60916486 | Msa0339650:CDS |
| AAATGCTGTCGAATATTATT+AGG | 0.205490 | 2_4:-60914880 | Msa0339650:three_prime_UTR |
| TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | 2_4:-60915841 | Msa0339650:CDS |
| CTCTATGTGATATCTGGTTT+TGG | 0.246364 | 2_4:-60916238 | Msa0339650:CDS |
| GGATTTCTCTATGTGATATC+TGG | 0.262897 | 2_4:-60916244 | Msa0339650:CDS |
| TCTCAGAGCTCTTCATTAAT+TGG | 0.278075 | 2_4:-60916129 | Msa0339650:CDS |
| AATGGAATGGAAGATATATT+TGG | 0.280921 | 2_4:-60914934 | Msa0339650:three_prime_UTR |
| TCTTTCCTATTACTCATTGC+AGG | 0.286895 | 2_4:-60915728 | Msa0339650:CDS |
| CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | 2_4:+60915723 | None:intergenic |
| TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | 2_4:-60915893 | Msa0339650:CDS |
| GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | 2_4:-60916566 | Msa0339650:CDS |
| CTTGAACAAGAATTTGGATT+TGG | 0.310501 | 2_4:-60916480 | Msa0339650:intron |
| ATCTGAAATCTTTGTTCAAA+AGG | 0.315789 | 2_4:-60917850 | Msa0339650:five_prime_UTR |
| CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | 2_4:-60915887 | Msa0339650:CDS |
| AACAAATTCCTAACTTTGTC+AGG | 0.325137 | 2_4:-60918020 | Msa0339650:five_prime_UTR |
| TCACTCGTGATCGTGATTTC+AGG | 0.355861 | 2_4:-60917706 | Msa0339650:CDS |
| TTGTGTATATGATTCATTCT+TGG | 0.360552 | 2_4:-60915116 | Msa0339650:three_prime_UTR |
| TAACTTTGTCAGGGTCTTGT+TGG | 0.364641 | 2_4:-60918010 | Msa0339650:five_prime_UTR |
| CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | 2_4:-60917530 | Msa0339650:CDS |
| TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | 2_4:-60917777 | Msa0339650:CDS |
| GGCATCTCAGTTGGTGCATC+TGG | 0.372637 | 2_4:-60916181 | Msa0339650:CDS |
| TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | 2_4:-60915875 | Msa0339650:CDS |
| CTTGTATATGGTTGCATGGT+GGG | 0.379600 | 2_4:-60916554 | Msa0339650:CDS |
| TGTCCTTTCGCAGTTAGAAT+TGG | 0.379685 | 2_4:-60916265 | Msa0339650:intron |
| AATTGTGACAGATTCATTAC+TGG | 0.381646 | 2_4:-60915561 | Msa0339650:intron |
| TTGGACGATATATGCCAATA+AGG | 0.382911 | 2_4:-60916110 | Msa0339650:intron |
| GGTGCATCTGGTGCATTGTT+TGG | 0.382955 | 2_4:-60916169 | Msa0339650:CDS |
| AGCCAACAACAGTCTAAATC+TGG | 0.385356 | 2_4:-60915815 | Msa0339650:CDS |
| ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | 2_4:+60915813 | None:intergenic |
| AACAAGACCCTGACAAAGTT+AGG | 0.404982 | 2_4:+60918012 | None:intergenic |
| AATGCTGTCGAATATTATTA+GGG | 0.406993 | 2_4:-60914879 | Msa0339650:three_prime_UTR |
| GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | 2_4:-60915476 | Msa0339650:CDS |
| TCTATGCAGACAACGGAATT+CGG | 0.409614 | 2_4:-60915296 | Msa0339650:intron |
| GAAATGGGTTTGAATCAGTT+AGG | 0.421296 | 2_4:+60917936 | None:intergenic |
| ACCGTATCAATATGTGTTGT+GGG | 0.439348 | 2_4:-60915756 | Msa0339650:CDS |
| GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | 2_4:-60915938 | Msa0339650:CDS |
| TTGTTCTCAGTCGGCAATGA+TGG | 0.441972 | 2_4:-60915076 | Msa0339650:three_prime_UTR |
| GTCTGCGTTATTCATACAAA+CGG | 0.445629 | 2_4:-60916203 | Msa0339650:CDS |
| TCTGAAATCTTTGTTCAAAA+GGG | 0.452645 | 2_4:-60917849 | Msa0339650:five_prime_UTR |
| GGGTCTTGTTGGATTCTGGC+TGG | 0.453364 | 2_4:-60917999 | Msa0339650:five_prime_UTR |
| TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | 2_4:-60917596 | Msa0339650:CDS |
| AGTAATAAACTTATGATGGC+TGG | 0.458120 | 2_4:+60915041 | None:intergenic |
| GGTGCATTGTTTGGCTTACT+CGG | 0.462230 | 2_4:-60916160 | Msa0339650:CDS |
| AAAGAGAATCTTCCAAGAAA+AGG | 0.470067 | 2_4:+60917560 | None:intergenic |
| TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | 2_4:-60917690 | Msa0339650:CDS |
| GTTGACAATTTCGCTCATCT+AGG | 0.472592 | 2_4:-60915902 | Msa0339650:CDS |
| ACACATGCAAAATTTCTTGA+AGG | 0.474975 | 2_4:-60915155 | Msa0339650:three_prime_UTR |
| GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | 2_4:-60916558 | Msa0339650:CDS |
| TAATAGTAATAAACTTATGA+TGG | 0.486847 | 2_4:+60915037 | None:intergenic |
| TACCGTATCAATATGTGTTG+TGG | 0.492632 | 2_4:-60915757 | Msa0339650:CDS |
| ATATTATTAGGGATATGTTA+AGG | 0.495652 | 2_4:-60914868 | Msa0339650:three_prime_UTR |
| TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | 2_4:-60917682 | Msa0339650:CDS |
| TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | 2_4:-60915466 | Msa0339650:CDS |
| GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | 2_4:-60915540 | Msa0339650:CDS |
| ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | 2_4:-60917691 | Msa0339650:CDS |
| CATTGTTTGGCTTACTCGGA+GGG | 0.524954 | 2_4:-60916156 | Msa0339650:CDS |
| ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | 2_4:+60917653 | None:intergenic |
| CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | 2_4:-60915188 | Msa0339650:CDS |
| TTCAAAATCATCTATAATCA+CGG | 0.533216 | 2_4:-60917916 | Msa0339650:five_prime_UTR |
| CTTTCCTATTACTCATTGCA+GGG | 0.535119 | 2_4:-60915727 | Msa0339650:intron |
| GTACCATGAAATGCATTCTC+AGG | 0.536653 | 2_4:+60917593 | None:intergenic |
| TCAACATGTTGGCAAGTACA+TGG | 0.537008 | 2_4:+60916526 | None:intergenic |
| ACCCACAACACATATTGATA+CGG | 0.539971 | 2_4:+60915755 | None:intergenic |
| AAATCACGATCACGAGTGAC+GGG | 0.541550 | 2_4:+60917710 | None:intergenic |
| TGACAGATTCATTACTGGGA+TGG | 0.543513 | 2_4:-60915556 | Msa0339650:intron |
| TAAACTGAGGACGAATCAAA+AGG | 0.544513 | 2_4:+60915846 | None:intergenic |
| TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | 2_4:-60916607 | Msa0339650:CDS |
| AGAAATTCGTTGTTCTCAGT+CGG | 0.545619 | 2_4:-60915085 | Msa0339650:three_prime_UTR |
| CACATGCAAAATTTCTTGAA+GGG | 0.545781 | 2_4:-60915154 | Msa0339650:three_prime_UTR |
| AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | 2_4:+60917506 | None:intergenic |
| GACAATTTCGCTCATCTAGG+AGG | 0.549429 | 2_4:-60915899 | Msa0339650:CDS |
| TCTGCGTTATTCATACAAAC+GGG | 0.553724 | 2_4:-60916202 | Msa0339650:CDS |
| AAGAGAGCAAAGGAATGGAA+TGG | 0.554489 | 2_4:-60914947 | Msa0339650:three_prime_UTR |
| ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | 2_4:+60917665 | None:intergenic |
| ATTGTGACAGATTCATTACT+GGG | 0.563523 | 2_4:-60915560 | Msa0339650:intron |
| ATACAAACGGGCATCTCAGT+TGG | 0.569101 | 2_4:-60916190 | Msa0339650:CDS |
| GAAATCACGATCACGAGTGA+CGG | 0.572889 | 2_4:+60917709 | None:intergenic |
| ACGACGAAGACGGAGACCCA+CGG | 0.573842 | 2_4:+60917744 | None:intergenic |
| ATCAAAAGAGAGCAAAGGAA+TGG | 0.574326 | 2_4:-60914952 | Msa0339650:three_prime_UTR |
| TCAACGGTGGTGCCACCATG+TGG | 0.575383 | 2_4:+60917785 | None:intergenic |
| CATGTGTATCTATCTATCCA+TGG | 0.577916 | 2_4:+60915171 | None:intergenic |
| AAATCATAATCATGAGTGGA+GGG | 0.582372 | 2_4:-60917814 | Msa0339650:exon |
| TTGTATATGGTTGCATGGTG+GGG | 0.585338 | 2_4:-60916553 | Msa0339650:CDS |
| AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | 2_4:+60917519 | None:intergenic |
| AAACAATTCTCCACAGACAA+AGG | 0.590975 | 2_4:-60917969 | Msa0339650:five_prime_UTR |
| ACAAATTCCTAACTTTGTCA+GGG | 0.594817 | 2_4:-60918019 | Msa0339650:five_prime_UTR |
| TGGTTCATGAACACGAAGGT+TGG | 0.597343 | 2_4:-60916587 | Msa0339650:CDS |
| AACAATGAAAATAATAACGT+TGG | 0.597447 | 2_4:+60917637 | None:intergenic |
| GGAACAAAGCATTTATTGTG+AGG | 0.597670 | 2_4:-60915445 | Msa0339650:intron |
| TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | 2_4:-60917760 | Msa0339650:CDS |
| TCTTGTATATGGTTGCATGG+TGG | 0.604832 | 2_4:-60916555 | Msa0339650:CDS |
| GCATTGTTTGGCTTACTCGG+AGG | 0.606501 | 2_4:-60916157 | Msa0339650:CDS |
| GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | 2_4:-60917761 | Msa0339650:CDS |
| CGAAATTGTCAACATGTGGA+AGG | 0.611940 | 2_4:+60915912 | None:intergenic |
| TGAGCGAAATTGTCAACATG+TGG | 0.615330 | 2_4:+60915908 | None:intergenic |
| GGATTCGACGACGACGAAGA+CGG | 0.615599 | 2_4:+60917734 | None:intergenic |
| CAACGGTGGTGCCACCATGT+GGG | 0.618108 | 2_4:+60917786 | None:intergenic |
| AACATCACATGCATGAGCAA+TGG | 0.619993 | 2_4:-60915263 | Msa0339650:CDS |
| ACATGGTGGCACCACCGTTG+AGG | 0.621441 | 2_4:-60917783 | Msa0339650:CDS |
| AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | 2_4:+60917518 | None:intergenic |
| TGGCTTATCCATTTAAACTG+AGG | 0.633333 | 2_4:+60915833 | None:intergenic |
| AAAATCATAATCATGAGTGG+AGG | 0.633390 | 2_4:-60917815 | Msa0339650:exon |
| CTATTATCAAAAGAGAGCAA+AGG | 0.634615 | 2_4:-60914957 | Msa0339650:three_prime_UTR |
| TCACGATCACGAGTGACGGG+AGG | 0.634822 | 2_4:+60917713 | None:intergenic |
| ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | 2_4:-60915512 | Msa0339650:CDS |
| AGGATGAACCTTAACCTCAA+CGG | 0.671763 | 2_4:+60917769 | None:intergenic |
| TCATAATCATGAGTGGAGGG+AGG | 0.674267 | 2_4:-60917811 | Msa0339650:exon |
| GAAGACGGAGACCCACGGCG+AGG | 0.680052 | 2_4:+60917749 | None:intergenic |
| GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | 2_4:+60915224 | None:intergenic |
| AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | 2_4:-60917800 | Msa0339650:CDS |
| GCAACCATATACAAGAGACA+AGG | 0.709780 | 2_4:+60916562 | None:intergenic |
| AAAATCATCTATAATCACGG+AGG | 0.711965 | 2_4:-60917913 | Msa0339650:five_prime_UTR |
| ATGAACCTTAACCTCAACGG+TGG | 0.726735 | 2_4:+60917772 | None:intergenic |
| GGAGGGAGGAACCCACATGG+TGG | 0.736064 | 2_4:-60917797 | Msa0339650:CDS |
| AAAGTGGTTCATGAACACGA+AGG | 0.793505 | 2_4:-60916591 | Msa0339650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTATGATTTTTTTTTT+TGG | + | chr2_4:60915107-60915126 | None:intergenic | 10.0% |
| !!! | ATTATAGATGATTTTGAAAT+GGG | + | chr2_4:60915010-60915029 | None:intergenic | 15.0% |
| !! | AATGATATAAATACAGATAA+TGG | + | chr2_4:60916541-60916560 | None:intergenic | 15.0% |
| !! | AAGACAATAAATTATTTATC+AGG | + | chr2_4:60916882-60916901 | None:intergenic | 15.0% |
| !! | TAAATAATTTATTGTCTTTG+CGG | - | chr2_4:60916884-60916903 | Msa0339650:intron | 15.0% |
| !! | ATATTACCTTTAATATTCTT+AGG | - | chr2_4:60917256-60917275 | Msa0339650:intron | 15.0% |
| !!! | GTTTTTTCTTTTATCTAAAT+TGG | - | chr2_4:60917595-60917614 | Msa0339650:CDS | 15.0% |
| !! | TAATAGTAATAAACTTATGA+TGG | + | chr2_4:60917894-60917913 | None:intergenic | 15.0% |
| !!! | GATTATAGATGATTTTGAAA+TGG | + | chr2_4:60915011-60915030 | None:intergenic | 20.0% |
| !! | TTCAAAATCATCTATAATCA+CGG | - | chr2_4:60915012-60915031 | Msa0339650:three_prime_UTR | 20.0% |
| !! | AAAAAAATCATAATCATGAG+TGG | - | chr2_4:60915110-60915129 | Msa0339650:three_prime_UTR | 20.0% |
| !! | AACAATGAAAATAATAACGT+TGG | + | chr2_4:60915294-60915313 | None:intergenic | 20.0% |
| !! | TACATTAATCAAGTTATGAT+TGG | - | chr2_4:60915528-60915547 | Msa0339650:CDS | 20.0% |
| !! | ATGAACATGTGTTTATAAAT+GGG | - | chr2_4:60915871-60915890 | Msa0339650:CDS | 20.0% |
| !!! | TTGTTTTTACATAAATGTTC+TGG | - | chr2_4:60916559-60916578 | Msa0339650:CDS | 20.0% |
| !!! | AGTAGTATTTAATCTAAAGT+TGG | - | chr2_4:60917342-60917361 | Msa0339650:intron | 20.0% |
| !!! | AATTTTTTTTCCTTTGTCTG+TGG | + | chr2_4:60914972-60914991 | None:intergenic | 25.0% |
| !! | ATCTGAAATCTTTGTTCAAA+AGG | - | chr2_4:60915078-60915097 | Msa0339650:three_prime_UTR | 25.0% |
| !! | TCTGAAATCTTTGTTCAAAA+GGG | - | chr2_4:60915079-60915098 | Msa0339650:three_prime_UTR | 25.0% |
| ! | TTAATCAAGTTATGATTGGT+TGG | - | chr2_4:60915532-60915551 | Msa0339650:CDS | 25.0% |
| ! | CATGAACATGTGTTTATAAA+TGG | - | chr2_4:60915870-60915889 | Msa0339650:CDS | 25.0% |
| ! | TGAACATGTGTTTATAAATG+GGG | - | chr2_4:60915872-60915891 | Msa0339650:CDS | 25.0% |
| ! | TTCATAGATTACATTCTCTA+TGG | - | chr2_4:60916113-60916132 | Msa0339650:CDS | 25.0% |
| ! | GCTATTGCAAATACATAATT+TGG | + | chr2_4:60916192-60916211 | None:intergenic | 25.0% |
| ! | TATGTATTTGCAATAGCTAA+TGG | - | chr2_4:60916195-60916214 | Msa0339650:CDS | 25.0% |
| !! | ACAGTACCAATCTTAATTTT+AGG | - | chr2_4:60916218-60916237 | Msa0339650:CDS | 25.0% |
| ! | TATCTGCCTAAAATTAAGAT+TGG | + | chr2_4:60916227-60916246 | None:intergenic | 25.0% |
| !! | ATGTTGAGTCTTCTTTTTAT+TGG | - | chr2_4:60916418-60916437 | Msa0339650:intron | 25.0% |
| !! | GTCTTCTTTTTATTGGAATT+CGG | - | chr2_4:60916425-60916444 | Msa0339650:intron | 25.0% |
| !!! | TTTTAGTTCATTCACCTTAT+TGG | + | chr2_4:60916835-60916854 | None:intergenic | 25.0% |
| ! | CAAAATGGAAAGAAATAGAA+TGG | + | chr2_4:60916922-60916941 | None:intergenic | 25.0% |
| ! | GTTGTAATAAATTTAGCTGT+TGG | - | chr2_4:60916990-60917009 | Msa0339650:intron | 25.0% |
| ! | GAACTAGAAAATAGAATTGA+TGG | + | chr2_4:60917534-60917553 | None:intergenic | 25.0% |
| ! | TTGTGTATATGATTCATTCT+TGG | - | chr2_4:60917812-60917831 | Msa0339650:exon | 25.0% |
| ! | AATGGAATGGAAGATATATT+TGG | - | chr2_4:60917994-60918013 | Msa0339650:five_prime_UTR | 25.0% |
| ! | AAATGCTGTCGAATATTATT+AGG | - | chr2_4:60918048-60918067 | Msa0339650:five_prime_UTR | 25.0% |
| ! | AATGCTGTCGAATATTATTA+GGG | - | chr2_4:60918049-60918068 | Msa0339650:five_prime_UTR | 25.0% |
| AACAAATTCCTAACTTTGTC+AGG | - | chr2_4:60914908-60914927 | Msa0339650:three_prime_UTR | 30.0% | |
| ACAAATTCCTAACTTTGTCA+GGG | - | chr2_4:60914909-60914928 | Msa0339650:three_prime_UTR | 30.0% | |
| AAAATCATCTATAATCACGG+AGG | - | chr2_4:60915015-60915034 | Msa0339650:three_prime_UTR | 30.0% | |
| AAAATCATAATCATGAGTGG+AGG | - | chr2_4:60915113-60915132 | Msa0339650:three_prime_UTR | 30.0% | |
| AAATCATAATCATGAGTGGA+GGG | - | chr2_4:60915114-60915133 | Msa0339650:three_prime_UTR | 30.0% | |
| AAAGAGAATCTTCCAAGAAA+AGG | + | chr2_4:60915371-60915390 | None:intergenic | 30.0% | |
| GAAAAAGAAAACTCACGTAA+AGG | + | chr2_4:60915432-60915451 | None:intergenic | 30.0% | |
| TGAGAATGAGTTTATTAGTG+TGG | - | chr2_4:60915653-60915672 | Msa0339650:intron | 30.0% | |
| ! | ACACTTTAGATGTCTAAGAT+TGG | - | chr2_4:60915806-60915825 | Msa0339650:CDS | 30.0% |
| ! | CACTTTAGATGTCTAAGATT+GGG | - | chr2_4:60915807-60915826 | Msa0339650:CDS | 30.0% |
| ! | ACTTTAGATGTCTAAGATTG+GGG | - | chr2_4:60915808-60915827 | Msa0339650:CDS | 30.0% |
| GAACATGTGTTTATAAATGG+GGG | - | chr2_4:60915873-60915892 | Msa0339650:CDS | 30.0% | |
| AACATGTGTTTATAAATGGG+GGG | - | chr2_4:60915874-60915893 | Msa0339650:CDS | 30.0% | |
| !! | AGTTAAATTGATTCGAGCTA+AGG | - | chr2_4:60915903-60915922 | Msa0339650:CDS | 30.0% |
| !! | GTTAAATTGATTCGAGCTAA+GGG | - | chr2_4:60915904-60915923 | Msa0339650:CDS | 30.0% |
| TTAATATTTACTCCTTCGTC+CGG | + | chr2_4:60915959-60915978 | None:intergenic | 30.0% | |
| AACAAAAACGTGTGTTTGTA+AGG | - | chr2_4:60916013-60916032 | Msa0339650:intron | 30.0% | |
| AAAAACCTAATAGATGTGTG+AGG | - | chr2_4:60916054-60916073 | Msa0339650:intron | 30.0% | |
| AAAACCTAATAGATGTGTGA+GGG | - | chr2_4:60916055-60916074 | Msa0339650:intron | 30.0% | |
| GAATGTAATCTATGAATCAC+CGG | + | chr2_4:60916109-60916128 | None:intergenic | 30.0% | |
| ! | TTTTAGGCAGATATATCTCT+TGG | - | chr2_4:60916234-60916253 | Msa0339650:CDS | 30.0% |
| ! | ATTTTCAGATTACAGGAGAT+GGG | - | chr2_4:60916298-60916317 | Msa0339650:intron | 30.0% |
| AAAAAGAAGACTCAACATGT+TGG | + | chr2_4:60916416-60916435 | None:intergenic | 30.0% | |
| CTTGAACAAGAATTTGGATT+TGG | - | chr2_4:60916448-60916467 | Msa0339650:intron | 30.0% | |
| ! | ACAAGAATTTGGATTTGGTA+TGG | - | chr2_4:60916453-60916472 | Msa0339650:intron | 30.0% |
| !! | TACAGATAATGGAATACTGT+TGG | + | chr2_4:60916530-60916549 | None:intergenic | 30.0% |
| GGAAAGAAATAGAATGGTTT+AGG | + | chr2_4:60916916-60916935 | None:intergenic | 30.0% | |
| CAAAACATCATGAGACAAAA+TGG | + | chr2_4:60916937-60916956 | None:intergenic | 30.0% | |
| CCAAGTCCTAAGAATATTAA+AGG | + | chr2_4:60917265-60917284 | None:intergenic | 30.0% | |
| CCTTTAATATTCTTAGGACT+TGG | - | chr2_4:60917262-60917281 | Msa0339650:intron | 30.0% | |
| AATTGTGACAGATTCATTAC+TGG | - | chr2_4:60917367-60917386 | Msa0339650:intron | 30.0% | |
| ATTGTGACAGATTCATTACT+GGG | - | chr2_4:60917368-60917387 | Msa0339650:intron | 30.0% | |
| ACAATATTCTATGCAGACAA+CGG | - | chr2_4:60917625-60917644 | Msa0339650:CDS | 30.0% | |
| ACACATGCAAAATTTCTTGA+AGG | - | chr2_4:60917773-60917792 | Msa0339650:CDS | 30.0% | |
| CACATGCAAAATTTCTTGAA+GGG | - | chr2_4:60917774-60917793 | Msa0339650:CDS | 30.0% | |
| AGTAATAAACTTATGATGGC+TGG | + | chr2_4:60917890-60917909 | None:intergenic | 30.0% | |
| CTATTATCAAAAGAGAGCAA+AGG | - | chr2_4:60917971-60917990 | Msa0339650:five_prime_UTR | 30.0% | |
| AAACAATTCTCCACAGACAA+AGG | - | chr2_4:60914959-60914978 | Msa0339650:three_prime_UTR | 35.0% | |
| ! | GAAATGGGTTTGAATCAGTT+AGG | + | chr2_4:60914995-60915014 | None:intergenic | 35.0% |
| ATTTCAGGCTCTTTAAGCAA+TGG | - | chr2_4:60915237-60915256 | Msa0339650:CDS | 35.0% | |
| TTTCAGGCTCTTTAAGCAAT+GGG | - | chr2_4:60915238-60915257 | Msa0339650:CDS | 35.0% | |
| ! | AAGAGAGGGTTTTCTTTAAG+TGG | + | chr2_4:60915398-60915417 | None:intergenic | 35.0% |
| CTTAAAGAAAACCCTCTCTT+TGG | - | chr2_4:60915398-60915417 | Msa0339650:intron | 35.0% | |
| AAAACTCACGTAAAGGAAGA+AGG | + | chr2_4:60915425-60915444 | None:intergenic | 35.0% | |
| ! | CTTTAGATGTCTAAGATTGG+GGG | - | chr2_4:60915809-60915828 | Msa0339650:CDS | 35.0% |
| TAATATTTACTCCTTCGTCC+GGG | + | chr2_4:60915958-60915977 | None:intergenic | 35.0% | |
| ! | TACTCGCATTTTCAGATTAC+AGG | - | chr2_4:60916291-60916310 | Msa0339650:intron | 35.0% |
| ! | CATTTTCAGATTACAGGAGA+TGG | - | chr2_4:60916297-60916316 | Msa0339650:intron | 35.0% |
| !! | TGCTCTAGAAGTAGATAAAG+TGG | - | chr2_4:60916321-60916340 | Msa0339650:intron | 35.0% |
| ! | ATTCGGCTTGAACAAGAATT+TGG | - | chr2_4:60916442-60916461 | Msa0339650:intron | 35.0% |
| ! | ATTTGGATTTGGTATGGTTC+TGG | - | chr2_4:60916459-60916478 | Msa0339650:intron | 35.0% |
| CGATATACTTGAACAATGCA+AGG | + | chr2_4:60916492-60916511 | None:intergenic | 35.0% | |
| !! | GATAATGGAATACTGTTGGT+CGG | + | chr2_4:60916526-60916545 | None:intergenic | 35.0% |
| AATCCAATTCTAACTGCGAA+AGG | + | chr2_4:60916669-60916688 | None:intergenic | 35.0% | |
| GGATTTCTCTATGTGATATC+TGG | - | chr2_4:60916684-60916703 | Msa0339650:intron | 35.0% | |
| !! | CTCTATGTGATATCTGGTTT+TGG | - | chr2_4:60916690-60916709 | Msa0339650:intron | 35.0% |
| !!! | TATGTGATATCTGGTTTTGG+AGG | - | chr2_4:60916693-60916712 | Msa0339650:intron | 35.0% |
| !!! | ATGTGATATCTGGTTTTGGA+GGG | - | chr2_4:60916694-60916713 | Msa0339650:intron | 35.0% |
| GTCTGCGTTATTCATACAAA+CGG | - | chr2_4:60916725-60916744 | Msa0339650:intron | 35.0% | |
| TCTGCGTTATTCATACAAAC+GGG | - | chr2_4:60916726-60916745 | Msa0339650:intron | 35.0% | |
| TCTCAGAGCTCTTCATTAAT+TGG | - | chr2_4:60916799-60916818 | Msa0339650:intron | 35.0% | |
| TTGGACGATATATGCCAATA+AGG | - | chr2_4:60916818-60916837 | Msa0339650:intron | 35.0% | |
| TAAACTGAGGACGAATCAAA+AGG | + | chr2_4:60917085-60917104 | None:intergenic | 35.0% | |
| TGATTCGTCCTCAGTTTAAA+TGG | - | chr2_4:60917087-60917106 | Msa0339650:intron | 35.0% | |
| TGGCTTATCCATTTAAACTG+AGG | + | chr2_4:60917098-60917117 | None:intergenic | 35.0% | |
| ATCCAGATTTAGACTGTTGT+TGG | + | chr2_4:60917118-60917137 | None:intergenic | 35.0% | |
| TACCGTATCAATATGTGTTG+TGG | - | chr2_4:60917171-60917190 | Msa0339650:intron | 35.0% | |
| ACCGTATCAATATGTGTTGT+GGG | - | chr2_4:60917172-60917191 | Msa0339650:intron | 35.0% | |
| ACCCACAACACATATTGATA+CGG | + | chr2_4:60917176-60917195 | None:intergenic | 35.0% | |
| TCTTTCCTATTACTCATTGC+AGG | - | chr2_4:60917200-60917219 | Msa0339650:intron | 35.0% | |
| CTTTCCTATTACTCATTGCA+GGG | - | chr2_4:60917201-60917220 | Msa0339650:intron | 35.0% | |
| ! | GGAACAAAGCATTTATTGTG+AGG | - | chr2_4:60917483-60917502 | Msa0339650:intron | 35.0% |
| CATGTGTATCTATCTATCCA+TGG | + | chr2_4:60917760-60917779 | None:intergenic | 35.0% | |
| AGAAATTCGTTGTTCTCAGT+CGG | - | chr2_4:60917843-60917862 | Msa0339650:five_prime_UTR | 35.0% | |
| ATCAAAAGAGAGCAAAGGAA+TGG | - | chr2_4:60917976-60917995 | Msa0339650:five_prime_UTR | 35.0% | |
| AACAAGACCCTGACAAAGTT+AGG | + | chr2_4:60914919-60914938 | None:intergenic | 40.0% | |
| ! | TAACTTTGTCAGGGTCTTGT+TGG | - | chr2_4:60914918-60914937 | Msa0339650:three_prime_UTR | 40.0% |
| AGGATGAACCTTAACCTCAA+CGG | + | chr2_4:60915162-60915181 | None:intergenic | 40.0% | |
| ! | TCTTTAAGCAATGGGTTCCA+TGG | - | chr2_4:60915246-60915265 | Msa0339650:CDS | 40.0% |
| ACAAAAGTTGGAACAAGCCA+TGG | + | chr2_4:60915266-60915285 | None:intergenic | 40.0% | |
| ACGTTGGCAAACACAAAAGT+TGG | + | chr2_4:60915278-60915297 | None:intergenic | 40.0% | |
| TGTCCTGAGAATGCATTTCA+TGG | - | chr2_4:60915332-60915351 | Msa0339650:intron | 40.0% | |
| GTACCATGAAATGCATTCTC+AGG | + | chr2_4:60915338-60915357 | None:intergenic | 40.0% | |
| !! | ACTTGTGTTGCTCCTTTTCT+TGG | - | chr2_4:60915356-60915375 | Msa0339650:intron | 40.0% |
| !! | GCCAGTTTTGTGAATGAGTT+AGG | - | chr2_4:60915694-60915713 | Msa0339650:intron | 40.0% |
| GCCTAACTCATTCACAAAAC+TGG | + | chr2_4:60915698-60915717 | None:intergenic | 40.0% | |
| ! | ATGTCTAAGATTGGGGGTAA+GGG | - | chr2_4:60915815-60915834 | Msa0339650:CDS | 40.0% |
| TGTGTTTATAAATGGGGGGT+TGG | - | chr2_4:60915878-60915897 | Msa0339650:CDS | 40.0% | |
| GTGTTTATAAATGGGGGGTT+GGG | - | chr2_4:60915879-60915898 | Msa0339650:CDS | 40.0% | |
| GTGTGTTTGTAAGGATGCAT+AGG | - | chr2_4:60916022-60916041 | Msa0339650:intron | 40.0% | |
| ACAACCCTCACACATCTATT+AGG | + | chr2_4:60916062-60916081 | None:intergenic | 40.0% | |
| AAAGTGGTTCATGAACACGA+AGG | - | chr2_4:60916337-60916356 | Msa0339650:intron | 40.0% | |
| GCAACCATATACAAGAGACA+AGG | + | chr2_4:60916369-60916388 | None:intergenic | 40.0% | |
| GTCTCTTGTATATGGTTGCA+TGG | - | chr2_4:60916370-60916389 | Msa0339650:intron | 40.0% | |
| TCTTGTATATGGTTGCATGG+TGG | - | chr2_4:60916373-60916392 | Msa0339650:intron | 40.0% | |
| CTTGTATATGGTTGCATGGT+GGG | - | chr2_4:60916374-60916393 | Msa0339650:intron | 40.0% | |
| TTGTATATGGTTGCATGGTG+GGG | - | chr2_4:60916375-60916394 | Msa0339650:intron | 40.0% | |
| TCAACATGTTGGCAAGTACA+TGG | + | chr2_4:60916405-60916424 | None:intergenic | 40.0% | |
| TAACTGCGAAAGGACAAGAA+AGG | + | chr2_4:60916659-60916678 | None:intergenic | 40.0% | |
| TGTCCTTTCGCAGTTAGAAT+TGG | - | chr2_4:60916663-60916682 | Msa0339650:intron | 40.0% | |
| ! | GTCTCATGATGTTTTGCAGA+TGG | - | chr2_4:60916941-60916960 | Msa0339650:intron | 40.0% |
| CGAAATTGTCAACATGTGGA+AGG | + | chr2_4:60917019-60917038 | None:intergenic | 40.0% | |
| TGAGCGAAATTGTCAACATG+TGG | + | chr2_4:60917023-60917042 | None:intergenic | 40.0% | |
| GTTGACAATTTCGCTCATCT+AGG | - | chr2_4:60917026-60917045 | Msa0339650:intron | 40.0% | |
| AGCCAACAACAGTCTAAATC+TGG | - | chr2_4:60917113-60917132 | Msa0339650:intron | 40.0% | |
| CTTACCCTGCAATGAGTAAT+AGG | + | chr2_4:60917208-60917227 | None:intergenic | 40.0% | |
| TGACAGATTCATTACTGGGA+TGG | - | chr2_4:60917372-60917391 | Msa0339650:intron | 40.0% | |
| GTTGTGTTCCTACCTCAAAA+TGG | - | chr2_4:60917452-60917471 | Msa0339650:intron | 40.0% | |
| !!! | TGACAACTCCATTTTGAGGT+AGG | + | chr2_4:60917463-60917482 | None:intergenic | 40.0% |
| TACCTCAAAATGGAGTTGTC+AGG | - | chr2_4:60917462-60917481 | Msa0339650:intron | 40.0% | |
| ! | TTCCTGACAACTCCATTTTG+AGG | + | chr2_4:60917467-60917486 | None:intergenic | 40.0% |
| TCTATGCAGACAACGGAATT+CGG | - | chr2_4:60917632-60917651 | Msa0339650:CDS | 40.0% | |
| AACATCACATGCATGAGCAA+TGG | - | chr2_4:60917665-60917684 | Msa0339650:CDS | 40.0% | |
| AAGAGAGCAAAGGAATGGAA+TGG | - | chr2_4:60917981-60918000 | Msa0339650:five_prime_UTR | 40.0% | |
| TCATAATCATGAGTGGAGGG+AGG | - | chr2_4:60915117-60915136 | Msa0339650:three_prime_UTR | 45.0% | |
| ATGAACCTTAACCTCAACGG+TGG | + | chr2_4:60915159-60915178 | None:intergenic | 45.0% | |
| AAATCACGATCACGAGTGAC+GGG | + | chr2_4:60915221-60915240 | None:intergenic | 45.0% | |
| GAAATCACGATCACGAGTGA+CGG | + | chr2_4:60915222-60915241 | None:intergenic | 45.0% | |
| TCACTCGTGATCGTGATTTC+AGG | - | chr2_4:60915222-60915241 | Msa0339650:CDS | 45.0% | |
| AGGAAGAAGGACCAAAGAGA+GGG | + | chr2_4:60915412-60915431 | None:intergenic | 45.0% | |
| AAGGAAGAAGGACCAAAGAG+AGG | + | chr2_4:60915413-60915432 | None:intergenic | 45.0% | |
| ! | CATCTAAAGTGTGACTCGTG+TGG | + | chr2_4:60915798-60915817 | None:intergenic | 45.0% |
| ! | GATGTCTAAGATTGGGGGTA+AGG | - | chr2_4:60915814-60915833 | Msa0339650:CDS | 45.0% |
| CGAGCTAAGGGATAAGAAGT+TGG | - | chr2_4:60915916-60915935 | Msa0339650:CDS | 45.0% | |
| GCTAAGGGATAAGAAGTTGG+AGG | - | chr2_4:60915919-60915938 | Msa0339650:CDS | 45.0% | |
| !! | GGAGGTTCTAAGTTCAAACC+CGG | - | chr2_4:60915937-60915956 | Msa0339650:CDS | 45.0% |
| TCTTGTGTCTGTGTCTCTAC+CGG | - | chr2_4:60916087-60916106 | Msa0339650:intron | 45.0% | |
| TGGTTCATGAACACGAAGGT+TGG | - | chr2_4:60916341-60916360 | Msa0339650:intron | 45.0% | |
| ATACAAACGGGCATCTCAGT+TGG | - | chr2_4:60916738-60916757 | Msa0339650:intron | 45.0% | |
| ! | GGTGCATTGTTTGGCTTACT+CGG | - | chr2_4:60916768-60916787 | Msa0339650:intron | 45.0% |
| ! | CATTGTTTGGCTTACTCGGA+GGG | - | chr2_4:60916772-60916791 | Msa0339650:intron | 45.0% |
| GACAATTTCGCTCATCTAGG+AGG | - | chr2_4:60917029-60917048 | Msa0339650:intron | 45.0% | |
| TTCGCTCATCTAGGAGGATT+TGG | - | chr2_4:60917035-60917054 | Msa0339650:intron | 45.0% | |
| ! | CATCTAGGAGGATTTGGTTC+TGG | - | chr2_4:60917041-60917060 | Msa0339650:intron | 45.0% |
| !! | TTTGGTTCTGGCTTTCTGCT+TGG | - | chr2_4:60917053-60917072 | Msa0339650:intron | 45.0% |
| ACTTGAATGAACGTTGCTCG+TGG | - | chr2_4:60917416-60917435 | Msa0339650:intron | 45.0% | |
| GAAGAGCTAGTATTCGACAG+AGG | + | chr2_4:60917707-60917726 | None:intergenic | 45.0% | |
| CTTTGTTCGCAACTTTGCCA+TGG | - | chr2_4:60917740-60917759 | Msa0339650:CDS | 45.0% | |
| TTGTTCTCAGTCGGCAATGA+TGG | - | chr2_4:60917852-60917871 | Msa0339650:five_prime_UTR | 45.0% | |
| !! | GTCAGGGTCTTGTTGGATTC+TGG | - | chr2_4:60914925-60914944 | Msa0339650:three_prime_UTR | 50.0% |
| TTAAGGTTCATCCTCGCCGT+GGG | - | chr2_4:60915168-60915187 | Msa0339650:exon | 50.0% | |
| ! | GATAATGGTGGCCAGATAGC+AGG | + | chr2_4:60915772-60915791 | None:intergenic | 50.0% |
| GCTATCTGGCCACCATTATC+AGG | - | chr2_4:60915772-60915791 | Msa0339650:CDS | 50.0% | |
| TGACTCGTGTGGCCTGATAA+TGG | + | chr2_4:60915787-60915806 | None:intergenic | 50.0% | |
| CTAAGTTCAAACCCGGACGA+AGG | - | chr2_4:60915944-60915963 | Msa0339650:CDS | 50.0% | |
| GGCGCCTTGTCTCTTGTATA+TGG | - | chr2_4:60916362-60916381 | Msa0339650:intron | 50.0% | |
| GGTGCATCTGGTGCATTGTT+TGG | - | chr2_4:60916759-60916778 | Msa0339650:intron | 50.0% | |
| ! | GCATTGTTTGGCTTACTCGG+AGG | - | chr2_4:60916771-60916790 | Msa0339650:intron | 50.0% |
| ! | GGGATGGTTCTACTCTTTCG+AGG | - | chr2_4:60917388-60917407 | Msa0339650:intron | 50.0% |
| !! | GGGTCTTGTTGGATTCTGGC+TGG | - | chr2_4:60914929-60914948 | Msa0339650:three_prime_UTR | 55.0% |
| TGGCACCACCGTTGAGGTTA+AGG | - | chr2_4:60915151-60915170 | Msa0339650:three_prime_UTR | 55.0% | |
| GTTAAGGTTCATCCTCGCCG+TGG | - | chr2_4:60915167-60915186 | Msa0339650:exon | 55.0% | |
| GGATTCGACGACGACGAAGA+CGG | + | chr2_4:60915197-60915216 | None:intergenic | 55.0% | |
| GCAGGCGGTTCAATGGATCT+TGG | + | chr2_4:60915754-60915773 | None:intergenic | 55.0% | |
| CCAGATAGCAGGCGGTTCAA+TGG | + | chr2_4:60915761-60915780 | None:intergenic | 55.0% | |
| CCATTGAACCGCCTGCTATC+TGG | - | chr2_4:60915758-60915777 | Msa0339650:CDS | 55.0% | |
| AATGGTGGCCAGATAGCAGG+CGG | + | chr2_4:60915769-60915788 | None:intergenic | 55.0% | |
| !! | CTCGTGTGGCCTGATAATGG+TGG | + | chr2_4:60915784-60915803 | None:intergenic | 55.0% |
| ! | GGCATCTCAGTTGGTGCATC+TGG | - | chr2_4:60916747-60916766 | Msa0339650:intron | 55.0% |
| AGTGGAGGGAGGAACCCACA+TGG | - | chr2_4:60915128-60915147 | Msa0339650:three_prime_UTR | 60.0% | |
| !! | CAACGGTGGTGCCACCATGT+GGG | + | chr2_4:60915145-60915164 | None:intergenic | 60.0% |
| !! | TCAACGGTGGTGCCACCATG+TGG | + | chr2_4:60915146-60915165 | None:intergenic | 60.0% |
| ACATGGTGGCACCACCGTTG+AGG | - | chr2_4:60915145-60915164 | Msa0339650:three_prime_UTR | 60.0% | |
| ACGACGAAGACGGAGACCCA+CGG | + | chr2_4:60915187-60915206 | None:intergenic | 60.0% | |
| ! | TCACGATCACGAGTGACGGG+AGG | + | chr2_4:60915218-60915237 | None:intergenic | 60.0% |
| GGAGGGAGGAACCCACATGG+TGG | - | chr2_4:60915131-60915150 | Msa0339650:three_prime_UTR | 65.0% | |
| GAAGACGGAGACCCACGGCG+AGG | + | chr2_4:60915182-60915201 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60914868 | 60918082 | 60914868 | ID=Msa0339650;Name=Msa0339650 |
| chr2_4 | mRNA | 60914868 | 60918082 | 60914868 | ID=Msa0339650-mRNA-1;Parent=Msa0339650;Name=Msa0339650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=257|1|1|1|1|1|6|316|384 |
| chr2_4 | exon | 60914868 | 60915309 | 60914868 | ID=Msa0339650-mRNA-1:exon:19010;Parent=Msa0339650-mRNA-1 |
| chr2_4 | exon | 60915446 | 60915572 | 60915446 | ID=Msa0339650-mRNA-1:exon:19009;Parent=Msa0339650-mRNA-1 |
| chr2_4 | exon | 60915728 | 60915990 | 60915728 | ID=Msa0339650-mRNA-1:exon:19008;Parent=Msa0339650-mRNA-1 |
| chr2_4 | exon | 60916111 | 60916274 | 60916111 | ID=Msa0339650-mRNA-1:exon:19007;Parent=Msa0339650-mRNA-1 |
| chr2_4 | exon | 60916481 | 60916644 | 60916481 | ID=Msa0339650-mRNA-1:exon:19006;Parent=Msa0339650-mRNA-1 |
| chr2_4 | exon | 60917515 | 60918082 | 60917515 | ID=Msa0339650-mRNA-1:exon:19005;Parent=Msa0339650-mRNA-1 |
| chr2_4 | five_prime_UTR | 60917826 | 60918082 | 60917826 | ID=Msa0339650-mRNA-1:five_prime_utr;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60917515 | 60917825 | 60917515 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60916481 | 60916644 | 60916481 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60916111 | 60916274 | 60916111 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60915728 | 60915990 | 60915728 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60915446 | 60915572 | 60915446 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | CDS | 60915184 | 60915309 | 60915184 | ID=Msa0339650-mRNA-1:cds;Parent=Msa0339650-mRNA-1 |
| chr2_4 | three_prime_UTR | 60914868 | 60915183 | 60914868 | ID=Msa0339650-mRNA-1:three_prime_utr;Parent=Msa0339650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
