AlfalfaGEDB | Msa0906780

M. sativa cultivar zhongmu-4 / Msa0906780

KEGG: K15030
GO: GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01399.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906780	XP_013451031.2	98.153	379	7	0	3	381	32	410	0.0	773

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906780	sp\|Q54KZ8\|EIF3M_DICDI	35.530	349	213	7	27	369	50	392	5.28e-70	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0906780	0.803216	3.875002e-49	-8.615850e-47
Msa0002490	Msa0906780	0.805091	1.577763e-49	-8.615850e-47
Msa0003780	Msa0906780	0.819836	9.421799e-53	-8.615850e-47
Msa0027260	Msa0906780	0.802235	6.176856e-49	-8.615850e-47
Msa0031820	Msa0906780	0.823709	1.197082e-53	-8.615850e-47
Msa0032090	Msa0906780	0.805927	1.053918e-49	-8.615850e-47
Msa0032260	Msa0906780	0.843799	1.121681e-58	-8.615850e-47
Msa0032920	Msa0906780	-0.803900	2.795913e-49	-8.615850e-47
Msa0033110	Msa0906780	0.812012	5.250876e-51	-8.615850e-47
Msa0033260	Msa0906780	0.813369	2.651013e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906780	MtrunA17_Chr6g0454811	98.153	379	7	0	3	381	32	410	0.0	773
Msa0906780	MtrunA17_Chr7g0257481	97.098	379	11	0	3	381	32	410	0.0	759

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906780	AT5G15610.2	67.539	382	121	1	3	381	32	413	0.0	546
Msa0906780	AT3G02200.2	64.675	385	129	1	4	381	33	417	0.0	531
Msa0906780	AT5G15610.1	62.774	411	121	2	3	381	32	442	0.0	528
Msa0906780	AT3G02200.1	65.861	331	113	0	4	334	33	363	5.84e-164	464

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Find 80 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAATTGACTGTAAGA+TGG	0.565834	6_2:+5439873	Msa0906780:CDS
AAATGTGATCAGTACCATTC+AGG	0.428425	6_2:+5440589	Msa0906780:CDS
AAATTCCTTATGAACTTATT+AGG	0.125836	6_2:+5439713	Msa0906780:CDS
AACGAAGCTAGTGACTTGGA+GGG	0.679179	6_2:+5440120	Msa0906780:CDS
AAGCAAAGTCTGCTAACTTG+AGG	0.611744	6_2:-5436905	None:intergenic
AAGTAGCAAGATAATTGGTG+AGG	0.654137	6_2:-5438322	None:intergenic
AATTCATTGCTATGGGAAAG+TGG	0.536465	6_2:+5436939	Msa0906780:CDS
AATTCCTTATGAACTTATTA+GGG	0.303697	6_2:+5439714	Msa0906780:CDS
ACAATCTCCATGACTTCATC+TGG	0.341158	6_2:-5437708	None:intergenic
ACCATAGTCATTCAATAAGG+TGG	0.547992	6_2:-5439515	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGTCAGATTCAATTGGA+AGG	+	chr6_2:5436049-5436068	Msa0906780:intron	30.0%
TGGAATGACACAACAATAAT+TGG	+	chr6_2:5436073-5436092	Msa0906780:intron	30.0%
GGAATGACACAACAATAATT+GGG	+	chr6_2:5436074-5436093	Msa0906780:intron	30.0%
TGATAGATTCAATTGAAGGT+TGG	+	chr6_2:5436603-5436622	Msa0906780:intron	30.0%
CAATCGTTACTGAATACAAA+GGG	-	chr6_2:5437221-5437240	None:intergenic	30.0%
TCAATCGTTACTGAATACAA+AGG	-	chr6_2:5437222-5437241	None:intergenic	30.0%
TTTGTATTCAGTAACGATTG+AGG	+	chr6_2:5437221-5437240	Msa0906780:intron	30.0%
GATTTATCCACATTCATCAA+TGG	+	chr6_2:5437316-5437335	Msa0906780:intron	30.0%
ATTGCAGATAATAGTGAAGA+TGG	-	chr6_2:5437667-5437686	None:intergenic	30.0%
TTCTTGAAAGAGTGGAAAAT+TGG	+	chr6_2:5438013-5438032	Msa0906780:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	5435851	5440956	5435851	ID=Msa0906780;Name=Msa0906780
chr6_2	mRNA	5435851	5440956	5435851	ID=Msa0906780-mRNA-1;Parent=Msa0906780;Name=Msa0906780-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.88\|0.8\|0.9\|1\|1\|10\|289\|381
chr6_2	exon	5435851	5435856	5435851	ID=Msa0906780-mRNA-1:exon:1603;Parent=Msa0906780-mRNA-1
chr6_2	exon	5436896	5437025	5436896	ID=Msa0906780-mRNA-1:exon:1604;Parent=Msa0906780-mRNA-1
chr6_2	exon	5437655	5437793	5437655	ID=Msa0906780-mRNA-1:exon:1605;Parent=Msa0906780-mRNA-1
chr6_2	exon	5437883	5438095	5437883	ID=Msa0906780-mRNA-1:exon:1606;Parent=Msa0906780-mRNA-1
chr6_2	exon	5438298	5438436	5438298	ID=Msa0906780-mRNA-1:exon:1607;Parent=Msa0906780-mRNA-1
chr6_2	exon	5439385	5439535	5439385	ID=Msa0906780-mRNA-1:exon:1608;Parent=Msa0906780-mRNA-1
chr6_2	exon	5439638	5439747	5439638	ID=Msa0906780-mRNA-1:exon:1609;Parent=Msa0906780-mRNA-1
chr6_2	exon	5439826	5439923	5439826	ID=Msa0906780-mRNA-1:exon:1610;Parent=Msa0906780-mRNA-1
chr6_2	exon	5440072	5440141	5440072	ID=Msa0906780-mRNA-1:exon:1611;Parent=Msa0906780-mRNA-1
chr6_2	exon	5440578	5440956	5440578	ID=Msa0906780-mRNA-1:exon:1612;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5435851	5435856	5435851	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5436896	5437025	5436896	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5437655	5437793	5437655	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5437883	5438095	5437883	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5438298	5438436	5438298	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5439385	5439535	5439385	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5439638	5439747	5439638	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5439826	5439923	5439826	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5440072	5440141	5440072	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	CDS	5440578	5440667	5440578	ID=Msa0906780-mRNA-1:cds;Parent=Msa0906780-mRNA-1
chr6_2	three_prime_UTR	5440668	5440956	5440668	ID=Msa0906780-mRNA-1:three_prime_utr;Parent=Msa0906780-mRNA-1

Gene Sequence

>Msa0906780

ATGAATGTTGCTGAGCCTCAAGTTAGCAGACTTTGCTTGGAGGCTGAAGAATTCATTGCTATGGGAAAGTGGTTGGAGCTGGCATCATTGATGATTACTTCCGCTGAATTGATTTTCTCAAAAATTTCTGAAAAAGATGTAGAGTCCATCTTCACTATTATCTGCAATCTTGTTACGAAGACTGAGAATCCAGATGAAGTCATGGAGATTGTGAAAGTTATAACTGCAAAATTAGTTCAGCAGCCAAATGAAAAGCCTGCGGTGCGATTGAAGATTTTGATCAATTTGTATAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGGCATTGAATTTGGCTGTTGATGGAAAAGTCACAGAACACATTATACCTTCATTCAAAAAGATCGATAGCTTCTTGAAAGAGTGGAAAATTGGGACACCAGAACAGAGAGAGCTGTTTCTCACCATCTCTAATGTTCTGAAGGAAAACAAAAGCATGTCAAAGGATTCTTTCAAGTTCCTCACCAATTATCTTGCTACTTTTTCTGGAGAAGAGGCGCATGTTTTGAGTGAAGCTAAGGAGGAAGCTGTGCGTGCAATTGTTGATTTTGTGAAGGCACCTGACGTATTTCAGTGTGATTTACTGGACATGCCTGCTGTTGGGCAACTGGAGAATGATGCCAAATATGCTCTGTTATATCAGCTTCTCAAGATTTTTCTTACTCAAAGGCTTGATGCATACTTAGAGTATCACACTGCAAATTCCACCTTATTGAATGACTATGGCCTTGTGCATGAAGAATGCATTGCAAAAATGAGATTGATGTCATTGGTTGATCTCAGCTCTGATGGATCTGGCCAAATTCCTTATGAACTTATTAGGGACACACTTCAGATCAATGATGATGAAGTTGAACTATGGGTTTTTAAAGCAATAACTGCAAAGTTAATTGACTGTAAGATGGACCAAATGAATCAAGTTGTCCTTGTTAGTCATCACACTGATCGGGTGTTTGGTCAGCATCAATGGCAAACACTGAGAACGAAGCTAGTGACTTGGAGGGGAAATATTTCAAATGTGATCAGTACCATTCAGGCCAACAAAGTATCGGAAGATGGGTCCCAGGCAGCCCATGGTTTGGCAGTTCGCTGA

Protein sequence

>Msa0906780

MNVAEPQVSRLCLEAEEFIAMGKWLELASLMITSAELIFSKISEKDVESIFTIICNLVTKTENPDEVMEIVKVITAKLVQQPNEKPAVRLKILINLYNLLETPYCQFYVYMKALNLAVDGKVTEHIIPSFKKIDSFLKEWKIGTPEQRELFLTISNVLKENKSMSKDSFKFLTNYLATFSGEEAHVLSEAKEEAVRAIVDFVKAPDVFQCDLLDMPAVGQLENDAKYALLYQLLKIFLTQRLDAYLEYHTANSTLLNDYGLVHEECIAKMRLMSLVDLSSDGSGQIPYELIRDTLQINDDEVELWVFKAITAKLIDCKMDQMNQVVLVSHHTDRVFGQHQWQTLRTKLVTWRGNISNVISTIQANKVSEDGSQAAHGLAVR*