AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006961

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006961.t1 MTR_4g084880 97.736 265 5 1 1 264 9 273 0.0 518
MS.gene006961.t1 MTR_8g087720 58.103 253 104 1 5 257 16 266 1.75e-108 315
MS.gene006961.t1 MTR_3g008920 63.203 231 82 1 17 247 16 243 8.53e-107 310
MS.gene006961.t1 MTR_5g079570 63.158 228 81 1 17 244 30 254 9.46e-107 310
MS.gene006961.t1 MTR_8g087710 56.202 258 108 2 10 264 19 274 3.11e-105 306
MS.gene006961.t1 MTR_2g017570 57.787 244 101 1 21 264 32 273 2.22e-103 301
MS.gene006961.t1 MTR_2g017590 57.500 240 100 1 23 262 32 269 8.23e-103 300
MS.gene006961.t1 MTR_2g017610 57.377 244 102 1 21 264 32 273 1.46e-102 300
MS.gene006961.t1 MTR_2g017660 53.333 240 110 1 5 244 17 254 9.93e-96 282
MS.gene006961.t1 MTR_2g017620 56.410 234 100 1 23 256 20 251 9.75e-93 274
MS.gene006961.t1 MTR_2g017620 56.410 234 100 1 23 256 34 265 1.47e-92 274
MS.gene006961.t1 MTR_7g010650 49.345 229 112 3 27 255 37 261 2.59e-76 233
MS.gene006961.t1 MTR_2g017620 57.609 184 78 0 73 256 1 184 2.07e-75 228
MS.gene006961.t1 MTR_8g087720 57.979 188 77 1 5 192 16 201 2.31e-73 223
MS.gene006961.t1 MTR_4g006730 46.768 263 126 4 1 260 54 305 2.07e-70 219
MS.gene006961.t1 MTR_2g104940 46.025 239 120 3 25 260 78 310 1.01e-68 215
MS.gene006961.t1 MTR_4g006630 48.416 221 111 2 40 260 1 218 1.47e-64 201
MS.gene006961.t1 MTR_4g006730 48.416 221 111 2 40 260 1 218 2.67e-64 200
MS.gene006961.t1 MTR_8g087720 56.548 168 71 1 5 172 16 181 1.12e-62 196
MS.gene006961.t1 MTR_1g097840 43.882 237 118 4 23 250 70 300 4.24e-61 195
MS.gene006961.t1 MTR_5g063930 41.739 230 124 4 26 251 36 259 7.68e-59 188
MS.gene006961.t1 MTR_4g006730 45.778 225 96 6 1 222 54 255 1.11e-46 157
MS.gene006961.t1 MTR_1g070385 37.209 215 132 2 29 243 64 275 1.72e-45 163
MS.gene006961.t1 MTR_7g010650 47.260 146 74 2 27 172 37 179 1.16e-41 142
MS.gene006961.t1 MTR_1g097840 43.353 173 89 3 23 192 70 236 6.80e-38 134
MS.gene006961.t1 MTR_5g012810 41.714 175 92 5 81 248 76 247 4.31e-27 105
MS.gene006961.t1 MTR_4g063090 39.080 174 96 3 81 248 78 247 6.36e-27 105
MS.gene006961.t1 MTR_2g101370 33.333 228 133 6 23 238 16 236 3.21e-26 103
MS.gene006961.t1 MTR_4g006650 46.939 147 60 4 28 171 5 136 4.15e-26 104
MS.gene006961.t1 MTR_1g077540 31.696 224 148 3 26 244 20 243 1.34e-25 102
MS.gene006961.t1 MTR_1g115405 34.454 238 139 5 26 252 20 251 3.43e-25 100
MS.gene006961.t1 MTR_8g013680 32.751 229 147 4 26 247 18 246 8.85e-25 99.4
MS.gene006961.t1 MTR_1g006490 33.182 220 130 6 26 236 18 229 6.86e-24 97.1
MS.gene006961.t1 MTR_6g069040 30.088 226 149 3 26 244 20 243 2.59e-23 95.5
MS.gene006961.t1 MTR_7g023350 31.984 247 152 5 15 252 12 251 2.86e-22 92.8
MS.gene006961.t1 MTR_1g006590 32.018 228 142 6 26 245 18 240 3.79e-21 89.7
MS.gene006961.t1 MTR_3g070210 27.876 226 143 5 30 238 58 280 4.20e-21 90.5
MS.gene006961.t1 MTR_2g094270 31.092 238 136 8 25 238 38 271 5.67e-21 90.1
MS.gene006961.t1 MTR_3g118010 29.515 227 138 6 27 236 37 258 2.45e-20 88.2
MS.gene006961.t1 MTR_5g082070 27.350 234 149 6 30 246 58 287 5.43e-20 87.4
MS.gene006961.t1 MTR_7g101190 28.346 254 152 8 27 255 39 287 1.72e-19 85.9
MS.gene006961.t1 MTR_5g010150 25.984 254 154 6 2 238 41 277 6.58e-19 84.3
MS.gene006961.t1 MTR_4g059390 31.771 192 111 5 63 238 82 269 7.08e-19 84.3
MS.gene006961.t1 MTR_7g103030 27.711 249 160 6 17 252 8 249 1.31e-18 82.8
MS.gene006961.t1 MTR_8g098375 25.100 251 160 5 2 238 41 277 6.95e-18 81.6
MS.gene006961.t1 MTR_4g415300 28.251 223 145 6 30 238 59 280 7.88e-17 78.6
MS.gene006961.t1 MTR_1g095070 29.508 183 109 4 72 238 25 203 6.23e-16 75.1
MS.gene006961.t1 MTR_3g070210 26.904 197 127 4 30 212 58 251 1.09e-15 75.5
MS.gene006961.t1 MTR_2g060360 29.064 203 112 4 75 264 70 253 2.85e-15 73.9
MS.gene006961.t1 MTR_2g094270 28.972 214 127 7 25 217 38 247 3.37e-15 73.9
MS.gene006961.t1 MTR_1g095070 28.947 152 91 3 72 210 25 172 5.00e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006961.t1 AT5G37820 64.368 261 90 2 1 260 16 274 1.14e-120 346
MS.gene006961.t1 AT5G37820 64.368 261 90 2 1 260 52 310 4.42e-120 346
MS.gene006961.t1 AT5G37810 65.000 260 88 2 1 259 16 273 2.13e-118 340
MS.gene006961.t1 AT4G18910 59.839 249 91 2 23 264 48 294 2.49e-105 307
MS.gene006961.t1 AT4G19030 55.061 247 102 2 23 262 51 295 7.28e-96 283
MS.gene006961.t1 AT1G31885 49.020 255 118 4 5 250 20 271 8.99e-81 246
MS.gene006961.t1 AT1G31885 51.818 220 95 3 39 250 1 217 4.47e-75 229
MS.gene006961.t1 AT2G34390 45.902 244 122 3 23 259 44 284 1.48e-70 219
MS.gene006961.t1 AT2G34390 45.607 239 120 3 28 259 7 242 1.65e-68 212
MS.gene006961.t1 AT4G18910 59.322 177 63 2 23 192 48 222 3.63e-67 208
MS.gene006961.t1 AT1G80760 44.488 254 129 4 1 252 59 302 2.29e-66 209
MS.gene006961.t1 AT4G19030 53.409 176 73 2 23 191 51 224 4.66e-61 192
MS.gene006961.t1 AT4G10380 43.983 241 119 5 19 250 71 304 3.96e-60 192
MS.gene006961.t1 AT4G19030 52.229 157 66 2 23 172 51 205 6.91e-52 169
MS.gene006961.t1 AT2G34390 46.893 177 84 3 23 192 44 217 4.28e-49 161
MS.gene006961.t1 AT3G06100 38.636 220 131 3 26 244 45 261 5.16e-48 160
MS.gene006961.t1 AT3G06100 38.889 216 128 3 30 244 1 213 1.18e-47 158
MS.gene006961.t1 AT2G34390 45.977 174 79 5 10 174 32 199 1.05e-43 148
MS.gene006961.t1 AT5G47450 34.335 233 144 4 11 236 3 233 1.87e-28 109
MS.gene006961.t1 AT3G26520 34.783 230 138 6 26 247 21 246 1.84e-27 106
MS.gene006961.t1 AT3G16240 33.333 222 131 5 26 236 18 233 3.23e-27 105
MS.gene006961.t1 AT4G01470 39.634 164 89 3 81 238 78 237 6.57e-26 102
MS.gene006961.t1 AT4G17340 35.465 172 106 2 81 247 76 247 2.32e-25 101
MS.gene006961.t1 AT1G17810 30.556 252 149 8 6 238 1 245 2.67e-25 101
MS.gene006961.t1 AT1G31885 46.602 103 50 3 5 105 20 119 6.81e-25 97.1
MS.gene006961.t1 AT3G06100 36.170 141 88 2 105 244 41 180 3.25e-24 96.7
MS.gene006961.t1 AT1G73190 30.233 258 154 8 6 244 1 251 3.56e-24 98.2
MS.gene006961.t1 AT2G36830 35.377 212 122 6 26 227 20 226 5.64e-24 97.4
MS.gene006961.t1 AT2G29870 39.655 116 70 0 144 259 20 135 6.06e-23 91.7
MS.gene006961.t1 AT2G16850 31.839 223 138 6 27 236 36 257 1.49e-21 91.7
MS.gene006961.t1 AT2G25810 31.646 237 156 4 11 244 3 236 2.04e-21 90.5
MS.gene006961.t1 AT2G37170 28.571 238 143 6 24 238 34 267 2.51e-20 88.2
MS.gene006961.t1 AT2G37170 28.571 238 143 6 24 238 77 310 3.34e-20 88.6
MS.gene006961.t1 AT2G37180 28.571 238 143 6 24 238 34 267 5.21e-20 87.4
MS.gene006961.t1 AT3G53420 28.085 235 142 5 27 238 39 269 5.42e-20 87.4
MS.gene006961.t1 AT3G53420 28.085 235 142 5 27 238 39 269 5.42e-20 87.4
MS.gene006961.t1 AT4G23400 25.197 254 169 5 2 238 28 277 2.06e-19 85.9
MS.gene006961.t1 AT1G01620 27.876 226 142 5 30 238 55 276 2.64e-19 85.5
MS.gene006961.t1 AT4G35100 30.493 223 141 6 27 236 38 259 3.74e-19 85.1
MS.gene006961.t1 AT4G35100 30.493 223 141 6 27 236 38 259 3.74e-19 85.1
MS.gene006961.t1 AT5G60660 27.848 237 144 5 25 238 37 269 5.54e-19 84.7
MS.gene006961.t1 AT4G00430 29.185 233 151 6 30 249 56 287 9.70e-19 84.0
MS.gene006961.t1 AT3G61430 29.185 233 151 6 30 249 55 286 1.60e-18 83.2
MS.gene006961.t1 AT3G61430 29.185 233 151 6 30 249 55 286 1.60e-18 83.2
MS.gene006961.t1 AT2G39010 28.085 235 142 5 27 238 38 268 1.82e-18 83.2
MS.gene006961.t1 AT2G45960 27.897 233 154 6 30 249 55 286 1.39e-17 80.9
MS.gene006961.t1 AT1G01620 26.699 206 131 4 49 238 3 204 1.58e-17 79.3
MS.gene006961.t1 AT3G54820 26.383 235 146 5 27 238 38 268 1.21e-16 78.2
MS.gene006961.t1 AT3G47440 29.630 216 138 6 30 236 26 236 6.92e-15 72.8
MS.gene006961.t1 AT2G45960 25.490 204 142 4 30 223 55 258 1.73e-11 63.5
MS.gene006961.t1 AT2G45960 27.461 193 130 4 30 212 55 247 1.80e-11 63.2

Find 55 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACATCTACAAAGGATTT+TGG 0.135458 4.4:+26960537 MS.gene006961:CDS
ATGAACCCAGCCAGAACTTT+TGG 0.245283 4.4:+26960500 MS.gene006961:CDS
CCCTTTGTTGGTGCTATATT+AGG 0.248716 4.4:+26960575 MS.gene006961:CDS
ATGATCTTGGTTTATTCTCT+TGG 0.315998 4.4:+26959565 MS.gene006961:CDS
TATCAATCAGATTGGAGAAT+TGG 0.321256 4.4:+26960299 MS.gene006961:intron
ACATACTTCTTAATATTTGC+AGG 0.325876 4.4:+26959454 MS.gene006961:CDS
TATTCTCTTGGTCACATCTC+TGG 0.351110 4.4:+26959577 MS.gene006961:CDS
TACAGCAGGCCCAAAAGTTC+TGG 0.354194 4.4:-26960510 None:intergenic
ACCTGTGCAGCAAGATATAA+TGG 0.385059 4.4:-26959841 None:intergenic
CTGTGACTGCTGGATTGAAA+TGG 0.387793 4.4:-26959603 None:intergenic
AAAGGAACAGTAACATTTCC+TGG 0.388672 4.4:+26959514 MS.gene006961:CDS
TATATAGTTGGACCCTTTGT+TGG 0.388837 4.4:+26960563 MS.gene006961:CDS
GTAGTAGACGTCTTCATTGC+TGG 0.394702 4.4:+26960348 MS.gene006961:CDS
TCGTCATTTCCCGCTTAAAC+AGG 0.397872 4.4:+26959642 MS.gene006961:CDS
GGGTCTATCAGTTATGATCT+TGG 0.398096 4.4:+26959552 MS.gene006961:CDS
CCCCATGTTACACAAATTCC+AGG 0.411162 4.4:-26959532 None:intergenic
AATGGAAGAAGGTGATCTTA+AGG 0.450995 4.4:+26959200 None:intergenic
TTCCTGGAATTTGTGTAACA+TGG 0.464453 4.4:+26959530 MS.gene006961:CDS
TGTATGATTTGAACTACCTC+AGG 0.467934 4.4:-26959258 None:intergenic
CTAGGATCTGTCCTTGCTAG+TGG 0.477384 4.4:+26959865 MS.gene006961:CDS
AATCAGATTGGAGAATTGGC+AGG 0.484184 4.4:+26960303 MS.gene006961:intron
ATTGCATGCAGCCCTGTGTC+AGG 0.484373 4.4:+26960470 MS.gene006961:intron
TCCTGGAATTTGTGTAACAT+GGG 0.487395 4.4:+26959531 MS.gene006961:CDS
GCCATTATATCTTGCTGCAC+AGG 0.493573 4.4:+26959840 MS.gene006961:CDS
TATCTTGCTGCACAGGTGCT+AGG 0.498223 4.4:+26959847 MS.gene006961:CDS
GCAGGCCCAAAAGTTCTGGC+TGG 0.505285 4.4:-26960506 None:intergenic
TGTGACTGCTGGATTGAAAT+GGG 0.509378 4.4:-26959602 None:intergenic
GGTAGTTCAAATCATACAAA+AGG 0.511595 4.4:+26959263 MS.gene006961:CDS
TTCATTGATGCACCTGACAC+AGG 0.513121 4.4:-26960482 None:intergenic
CGTAGTGGTTCTGAATAAAG+TGG 0.538283 4.4:+26959483 MS.gene006961:CDS
TGTTGTATCTGCAGTTTCCA+CGG 0.547342 4.4:+26960002 MS.gene006961:CDS
AATAAAGTGGAAGAAACTAA+AGG 0.547480 4.4:+26959496 MS.gene006961:CDS
TAGTAGACGTCTTCATTGCT+GGG 0.549173 4.4:+26960349 MS.gene006961:CDS
GAGATCACGAAAATGGAAGA+AGG 0.552927 4.4:+26959189 None:intergenic
CATACTTCTTAATATTTGCA+GGG 0.553842 4.4:+26959455 MS.gene006961:CDS
CAGGTAATAGCAGAGGTGAT+AGG 0.557378 4.4:+26959430 MS.gene006961:intron
GCGAAGCTAACTGTGACTGC+TGG 0.557473 4.4:-26959613 None:intergenic
ATATGCATGCCTGTTTAAGC+GGG 0.559351 4.4:-26959651 None:intergenic
TAGATGTGCATCACTACAGC+AGG 0.560341 4.4:-26960524 None:intergenic
TATATGCATGCCTGTTTAAG+CGG 0.569385 4.4:-26959652 None:intergenic
CCTAATATAGCACCAACAAA+GGG 0.576824 4.4:-26960575 None:intergenic
CAGGCCCAAAAGTTCTGGCT+GGG 0.576999 4.4:-26960505 None:intergenic
ACCTAATATAGCACCAACAA+AGG 0.581057 4.4:-26960576 None:intergenic
GGCACAATGTTCCACTAGCA+AGG 0.584967 4.4:-26959876 None:intergenic
ATCAGATTGGAGAATTGGCA+GGG 0.586964 4.4:+26960304 MS.gene006961:intron
GAATTGGCAGGGATTGCTGT+TGG 0.598721 4.4:+26960315 MS.gene006961:CDS
ATTTGCAGGGTGTTGCGTAG+TGG 0.602223 4.4:+26959468 MS.gene006961:CDS
CCTGGAATTTGTGTAACATG+GGG 0.603385 4.4:+26959532 MS.gene006961:CDS
GATTGAATATTAGAACCTGC+TGG 0.604048 4.4:-26959940 None:intergenic
TCATTGATGCACCTGACACA+GGG 0.615117 4.4:-26960481 None:intergenic
CTTCGGCTTAATTCTCTGAG+TGG 0.624993 4.4:-26960635 None:intergenic
ACTAACCGCTCTATTGTCCG+TGG 0.634378 4.4:-26960019 None:intergenic
GTAGTGATGCACATCTACAA+AGG 0.641675 4.4:+26960530 MS.gene006961:CDS
TATGCAACAGGTAATAGCAG+AGG 0.665558 4.4:+26959423 MS.gene006961:intron
AGTTTCCACGGACAATAGAG+CGG 0.688862 4.4:+26960014 MS.gene006961:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTAATGTGATTGTA+TGG - chr4.4:26959317-26959336 None:intergenic 15.0%
!! TACTATATATATAGTTTCAA+TGG + chr4.4:26960387-26960406 MS.gene006961:intron 15.0%
!!! AAATTTTGTTTTGAAAATAG+TGG - chr4.4:26960203-26960222 None:intergenic 15.0%
!!! AGGAATTTGAATTAATTTTA+TGG - chr4.4:26960274-26960293 None:intergenic 15.0%
!!! CATTTTGGTATATAAAATTA+GGG + chr4.4:26960079-26960098 MS.gene006961:intron 15.0%
!!! TTGAATTAATTTTATGGAAA+AGG - chr4.4:26960268-26960287 None:intergenic 15.0%
!! CAAAACAAAATTTCTATACT+AGG + chr4.4:26960210-26960229 MS.gene006961:intron 20.0%
!!! GCATTTTGGTATATAAAATT+AGG + chr4.4:26960078-26960097 MS.gene006961:intron 20.0%
!!! GTAGATGAAAAATCTTTTTT+TGG + chr4.4:26959910-26959929 MS.gene006961:CDS 20.0%
! AAAAATGAAATGTATGCAAC+AGG + chr4.4:26959411-26959430 MS.gene006961:intron 25.0%
! AAATTGCAGCAGTATATATA+TGG - chr4.4:26960434-26960453 None:intergenic 25.0%
! AATAAAGTGGAAGAAACTAA+AGG + chr4.4:26959496-26959515 MS.gene006961:CDS 25.0%
! ACATACTTCTTAATATTTGC+AGG + chr4.4:26959454-26959473 MS.gene006961:CDS 25.0%
! CAGTAAATACTTACTATTAG+TGG - chr4.4:26960144-26960163 None:intergenic 25.0%
! CATACTTCTTAATATTTGCA+GGG + chr4.4:26959455-26959474 MS.gene006961:CDS 25.0%
! CCAAAATGCAAGAAAATATA+AGG - chr4.4:26960067-26960086 None:intergenic 25.0%
! TTTCATCTACATCAAAAAGA+AGG - chr4.4:26959900-26959919 None:intergenic 25.0%
!! CCTTATATTTTCTTGCATTT+TGG + chr4.4:26960064-26960083 MS.gene006961:intron 25.0%
!!! CATAAATTGTTGATTTTTGC+AGG + chr4.4:26959816-26959835 MS.gene006961:intron 25.0%
AATGTGATTGTATGGTACAA+TGG - chr4.4:26959309-26959328 None:intergenic 30.0%
ATATGTGTACAATGGTACAA+TGG - chr4.4:26959362-26959381 None:intergenic 30.0%
ATGATCTTGGTTTATTCTCT+TGG + chr4.4:26959565-26959584 MS.gene006961:CDS 30.0%
CACAAACAAAAAGTGAATCA+GGG + chr4.4:26959223-26959242 MS.gene006961:CDS 30.0%
CCAATCTGATTGATAAAAAG+AGG - chr4.4:26960294-26960313 None:intergenic 30.0%
GGTAGTTCAAATCATACAAA+AGG + chr4.4:26959263-26959282 MS.gene006961:CDS 30.0%
TATCAATCAGATTGGAGAAT+TGG + chr4.4:26960299-26960318 MS.gene006961:intron 30.0%
TGACAAAGATATGTGTACAA+TGG - chr4.4:26959370-26959389 None:intergenic 30.0%
TGCATGCAATTATCAAACTT+AGG - chr4.4:26960460-26960479 None:intergenic 30.0%
! CCTCTTTTTATCAATCAGAT+TGG + chr4.4:26960291-26960310 MS.gene006961:intron 30.0%
!!! GGATTTTGGGTTTATATAGT+TGG + chr4.4:26960551-26960570 MS.gene006961:CDS 30.0%
AAAAGGCTAACATGTGTCTT+AGG - chr4.4:26960251-26960270 None:intergenic 35.0%
AAAGGAACAGTAACATTTCC+TGG + chr4.4:26959514-26959533 MS.gene006961:CDS 35.0%
AAAGGCTAACATGTGTCTTA+GGG - chr4.4:26960250-26960269 None:intergenic 35.0%
ACCTAATATAGCACCAACAA+AGG - chr4.4:26960579-26960598 None:intergenic 35.0%
CCTAATATAGCACCAACAAA+GGG - chr4.4:26960578-26960597 None:intergenic 35.0%
CTTAACGACTGAATTAGAGA+TGG + chr4.4:26959767-26959786 MS.gene006961:intron 35.0%
GATTGAATATTAGAACCTGC+TGG - chr4.4:26959943-26959962 None:intergenic 35.0%
GCACAAACAAAAAGTGAATC+AGG + chr4.4:26959222-26959241 MS.gene006961:CDS 35.0%
TATATAGTTGGACCCTTTGT+TGG + chr4.4:26960563-26960582 MS.gene006961:CDS 35.0%
TATATGCATGCCTGTTTAAG+CGG - chr4.4:26959655-26959674 None:intergenic 35.0%
TCCTGGAATTTGTGTAACAT+GGG + chr4.4:26959531-26959550 MS.gene006961:CDS 35.0%
TGTATGATTTGAACTACCTC+AGG - chr4.4:26959261-26959280 None:intergenic 35.0%
TTCCTGGAATTTGTGTAACA+TGG + chr4.4:26959530-26959549 MS.gene006961:CDS 35.0%
! AAAAGTGAATCAGGGTTTTG+TGG + chr4.4:26959231-26959250 MS.gene006961:CDS 35.0%
! AAGTGTTTGAGACGACAAAA+TGG - chr4.4:26959750-26959769 None:intergenic 35.0%
! AGTGTTTGAGACGACAAAAT+GGG - chr4.4:26959749-26959768 None:intergenic 35.0%
! GCACATCTACAAAGGATTTT+GGG + chr4.4:26960538-26960557 MS.gene006961:CDS 35.0%
! TGCACATCTACAAAGGATTT+TGG + chr4.4:26960537-26960556 MS.gene006961:CDS 35.0%
AATCAGATTGGAGAATTGGC+AGG + chr4.4:26960303-26960322 MS.gene006961:intron 40.0%
ACCTGTGCAGCAAGATATAA+TGG - chr4.4:26959844-26959863 None:intergenic 40.0%
ATATGCATGCCTGTTTAAGC+GGG - chr4.4:26959654-26959673 None:intergenic 40.0%
ATCAGATTGGAGAATTGGCA+GGG + chr4.4:26960304-26960323 MS.gene006961:intron 40.0%
CATGCTAATATGTGCCCTAA+GGG + chr4.4:26960103-26960122 MS.gene006961:intron 40.0%
CCTGGAATTTGTGTAACATG+GGG + chr4.4:26959532-26959551 MS.gene006961:CDS 40.0%
GGGTCTATCAGTTATGATCT+TGG + chr4.4:26959552-26959571 MS.gene006961:CDS 40.0%
GTAGTGATGCACATCTACAA+AGG + chr4.4:26960530-26960549 MS.gene006961:CDS 40.0%
TAGTAGACGTCTTCATTGCT+GGG + chr4.4:26960349-26960368 MS.gene006961:CDS 40.0%
TATGCAACAGGTAATAGCAG+AGG + chr4.4:26959423-26959442 MS.gene006961:intron 40.0%
TATTCTCTTGGTCACATCTC+TGG + chr4.4:26959577-26959596 MS.gene006961:CDS 40.0%
TCATGCTAATATGTGCCCTA+AGG + chr4.4:26960102-26960121 MS.gene006961:intron 40.0%
TGTGACTGCTGGATTGAAAT+GGG - chr4.4:26959605-26959624 None:intergenic 40.0%
TGTTGTATCTGCAGTTTCCA+CGG + chr4.4:26960002-26960021 MS.gene006961:CDS 40.0%
!! CCCTTTGTTGGTGCTATATT+AGG + chr4.4:26960575-26960594 MS.gene006961:CDS 40.0%
!! CGTAGTGGTTCTGAATAAAG+TGG + chr4.4:26959483-26959502 MS.gene006961:CDS 40.0%
!! TTTTGAGGAAGCTTGAGCTT+CGG - chr4.4:26960655-26960674 None:intergenic 40.0%
!!! GTGTCTCTAGAGCAAGTTTT+CGG + chr4.4:26960675-26960694 MS.gene006961:CDS 40.0%
!!! TTGCTCTAGAGACACTTTTG+AGG - chr4.4:26960670-26960689 None:intergenic 40.0%
!!! TTTTTTGGAACAGTACCAGC+AGG + chr4.4:26959925-26959944 MS.gene006961:CDS 40.0%
AGTTTCCACGGACAATAGAG+CGG + chr4.4:26960014-26960033 MS.gene006961:CDS 45.0%
CAGGTAATAGCAGAGGTGAT+AGG + chr4.4:26959430-26959449 MS.gene006961:intron 45.0%
CCCCATGTTACACAAATTCC+AGG - chr4.4:26959535-26959554 None:intergenic 45.0%
CTGTGACTGCTGGATTGAAA+TGG - chr4.4:26959606-26959625 None:intergenic 45.0%
CTTCGGCTTAATTCTCTGAG+TGG - chr4.4:26960638-26960657 None:intergenic 45.0%
GCCATTATATCTTGCTGCAC+AGG + chr4.4:26959840-26959859 MS.gene006961:CDS 45.0%
GTAGTAGACGTCTTCATTGC+TGG + chr4.4:26960348-26960367 MS.gene006961:CDS 45.0%
TAGATGTGCATCACTACAGC+AGG - chr4.4:26960527-26960546 None:intergenic 45.0%
TCATTGATGCACCTGACACA+GGG - chr4.4:26960484-26960503 None:intergenic 45.0%
TCGTCATTTCCCGCTTAAAC+AGG + chr4.4:26959642-26959661 MS.gene006961:CDS 45.0%
TTCATTGATGCACCTGACAC+AGG - chr4.4:26960485-26960504 None:intergenic 45.0%
! AATCCCTAACTTGTGCCCTT+AGG - chr4.4:26960121-26960140 None:intergenic 45.0%
! ATCCCTAACTTGTGCCCTTA+GGG - chr4.4:26960120-26960139 None:intergenic 45.0%
! ATGAACCCAGCCAGAACTTT+TGG + chr4.4:26960500-26960519 MS.gene006961:CDS 45.0%
! TGAACCCAGCCAGAACTTTT+GGG + chr4.4:26960501-26960520 MS.gene006961:CDS 45.0%
ACTAACCGCTCTATTGTCCG+TGG - chr4.4:26960022-26960041 None:intergenic 50.0%
CTAGGATCTGTCCTTGCTAG+TGG + chr4.4:26959865-26959884 MS.gene006961:CDS 50.0%
GAATTGGCAGGGATTGCTGT+TGG + chr4.4:26960315-26960334 MS.gene006961:CDS 50.0%
GGCACAATGTTCCACTAGCA+AGG - chr4.4:26959879-26959898 None:intergenic 50.0%
TACAGCAGGCCCAAAAGTTC+TGG - chr4.4:26960513-26960532 None:intergenic 50.0%
TATCTTGCTGCACAGGTGCT+AGG + chr4.4:26959847-26959866 MS.gene006961:CDS 50.0%
! TGCCCTAAGGGCACAAGTTA+GGG + chr4.4:26960115-26960134 MS.gene006961:intron 50.0%
!! AGGGTTTTGTGGTTCTCCTG+AGG + chr4.4:26959242-26959261 MS.gene006961:CDS 50.0%
!! ATTTGCAGGGTGTTGCGTAG+TGG + chr4.4:26959468-26959487 MS.gene006961:CDS 50.0%
ATTGCATGCAGCCCTGTGTC+AGG + chr4.4:26960470-26960489 MS.gene006961:intron 55.0%
GCGAAGCTAACTGTGACTGC+TGG - chr4.4:26959616-26959635 None:intergenic 55.0%
! CAGGCCCAAAAGTTCTGGCT+GGG - chr4.4:26960508-26960527 None:intergenic 55.0%
! GTGCCCTAAGGGCACAAGTT+AGG + chr4.4:26960114-26960133 MS.gene006961:intron 55.0%
! GCAGGCCCAAAAGTTCTGGC+TGG - chr4.4:26960509-26960528 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 26959201 26960700 26959201 ID=MS.gene006961
chr4.4 mRNA 26959201 26960700 26959201 ID=MS.gene006961.t1;Parent=MS.gene006961
chr4.4 exon 26959201 26959284 26959201 ID=MS.gene006961.t1.exon1;Parent=MS.gene006961.t1
chr4.4 CDS 26959201 26959284 26959201 ID=cds.MS.gene006961.t1;Parent=MS.gene006961.t1
chr4.4 exon 26959433 26959663 26959433 ID=MS.gene006961.t1.exon2;Parent=MS.gene006961.t1
chr4.4 CDS 26959433 26959663 26959433 ID=cds.MS.gene006961.t1;Parent=MS.gene006961.t1
chr4.4 exon 26959838 26960035 26959838 ID=MS.gene006961.t1.exon3;Parent=MS.gene006961.t1
chr4.4 CDS 26959838 26960035 26959838 ID=cds.MS.gene006961.t1;Parent=MS.gene006961.t1
chr4.4 exon 26960309 26960370 26960309 ID=MS.gene006961.t1.exon4;Parent=MS.gene006961.t1
chr4.4 CDS 26960309 26960370 26960309 ID=cds.MS.gene006961.t1;Parent=MS.gene006961.t1
chr4.4 exon 26960481 26960700 26960481 ID=MS.gene006961.t1.exon5;Parent=MS.gene006961.t1
chr4.4 CDS 26960481 26960700 26960481 ID=cds.MS.gene006961.t1;Parent=MS.gene006961.t1
Gene Sequence

>MS.gene006961

ATGGAAGAAGGTGATCTTAAGGCACAAACAAAAAGTGAATCAGGGTTTTGTGGTTCTCCTGAGGTAGTTCAAATCATACAAAAGGTACACATATTAATAATTCTACCATTGTACCATACAATCACATTAATAATATATAGTTTTCATTTATATAGTTACCATTGTACCATTGTACACATATCTTTGTCACTACTAATGAATGTTTTATTTAAAAATGAAATGTATGCAACAGGTAATAGCAGAGGTGATAGGAACATACTTCTTAATATTTGCAGGGTGTTGCGTAGTGGTTCTGAATAAAGTGGAAGAAACTAAAGGAACAGTAACATTTCCTGGAATTTGTGTAACATGGGGTCTATCAGTTATGATCTTGGTTTATTCTCTTGGTCACATCTCTGGTGCCCATTTCAATCCAGCAGTCACAGTTAGCTTCGCAATCTATCGTCATTTCCCGCTTAAACAGGCATGCATATACTTATGACAACTTGATCTACTCAGCTCACATTGTTATAAAAAGTTGAATTAACGAAAAAAATAATTACTCTCCCATTTTGTCGTCTCAAACACTTAACGACTGAATTAGAGATGGATTTCTTGTTTTTCGAACATATGTAACATAAATTGTTGATTTTTGCAGGTGCCATTATATCTTGCTGCACAGGTGCTAGGATCTGTCCTTGCTAGTGGAACATTGTGCCTTCTTTTTGATGTAGATGAAAAATCTTTTTTTGGAACAGTACCAGCAGGTTCTAATATTCAATCTCTTGTCTTTGAGATACTCACATCATTTCTCTTGATGTTTGTTGTATCTGCAGTTTCCACGGACAATAGAGCGGTTAGTATACTCAGTTTAGTTTAATTTACCTTATATTTTCTTGCATTTTGGTATATAAAATTAGGGTCATGCTAATATGTGCCCTAAGGGCACAAGTTAGGGATTCCACTAATAGTAAGTATTTACTGAGAAACATTAATTTTCAATTTTTTAATAATAAATTGCCACTATTTTCAAAACAAAATTTCTATACTAGGTTCATTCACATGTGCCCTAAGACACATGTTAGCCTTTTCCATAAAATTAATTCAAATTCCTCTTTTTATCAATCAGATTGGAGAATTGGCAGGGATTGCTGTTGGCATGACAATCGTAGTAGACGTCTTCATTGCTGGGTAATTTCAACACTATTACTATATATATAGTTTCAATGGTTTTACTTATCATAATGAAGTCCATATATATACTGCTGCAATTTAATCCTAAGTTTGATAATTGCATGCAGCCCTGTGTCAGGTGCATCAATGAACCCAGCCAGAACTTTTGGGCCTGCTGTAGTGATGCACATCTACAAAGGATTTTGGGTTTATATAGTTGGACCCTTTGTTGGTGCTATATTAGGTGCATCAGCTTACAACTTGATTAGATTTACTGATAAACCACTCAGAGAATTAAGCCGAAGCTCAAGCTTCCTCAAAAGTGTCTCTAGAGCAAGTTTTCGGTAG
Protein sequence

>MS.gene006961.t1

MEEGDLKAQTKSESGFCGSPEVVQIIQKVIAEVIGTYFLIFAGCCVVVLNKVEETKGTVTFPGICVTWGLSVMILVYSLGHISGAHFNPAVTVSFAIYRHFPLKQVPLYLAAQVLGSVLASGTLCLLFDVDEKSFFGTVPAGSNIQSLVFEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIVVDVFIAGPVSGASMNPARTFGPAVVMHIYKGFWVYIVGPFVGAILGASAYNLIRFTDKPLRELSRSSSFLKSVSRASFR