AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46390.t1 MTR_4g099180 94.081 321 19 0 20 340 105 425 0.0 583
MS.gene46390.t1 MTR_7g451440 64.307 339 105 3 15 338 107 444 2.95e-141 407
MS.gene46390.t1 MTR_4g099180 90.164 183 18 0 20 202 105 287 1.41e-118 345
MS.gene46390.t1 MTR_4g099180 97.605 167 4 0 37 203 122 288 1.45e-118 345
MS.gene46390.t1 MTR_8g007500 68.340 259 81 1 83 340 193 451 2.42e-117 347
MS.gene46390.t1 MTR_5g058920 52.326 344 123 6 16 333 105 433 3.69e-102 308
MS.gene46390.t1 MTR_3g072650 51.622 339 120 6 22 333 100 421 4.35e-101 305
MS.gene46390.t1 MTR_3g072650 54.244 271 90 5 22 265 100 363 1.04e-96 292
MS.gene46390.t1 MTR_8g080860 37.500 200 102 2 84 260 13 212 1.70e-31 120
MS.gene46390.t1 MTR_8g080860 33.168 202 112 1 85 263 37 238 1.94e-27 109
MS.gene46390.t1 MTR_8g080860 37.654 162 101 0 83 244 104 265 1.24e-26 107
MS.gene46390.t1 MTR_8g080860 35.227 176 114 0 87 262 85 260 3.14e-26 105
MS.gene46390.t1 MTR_8g080860 32.090 134 91 0 130 263 13 146 1.88e-17 81.6
MS.gene46390.t1 MTR_8g080860 37.500 200 102 2 84 260 17 216 2.00e-31 120
MS.gene46390.t1 MTR_8g080860 33.168 202 112 1 85 263 41 242 2.31e-27 108
MS.gene46390.t1 MTR_8g080860 37.654 162 101 0 83 244 108 269 1.50e-26 107
MS.gene46390.t1 MTR_8g080860 35.227 176 114 0 87 262 89 264 3.60e-26 105
MS.gene46390.t1 MTR_8g080860 32.090 134 91 0 130 263 17 150 2.17e-17 81.6
MS.gene46390.t1 MTR_8g088930 35.955 178 114 0 86 263 12 189 8.52e-29 117
MS.gene46390.t1 MTR_8g088930 35.036 137 89 0 127 263 7 143 4.26e-19 89.0
MS.gene46390.t1 MTR_8g088930 36.364 143 83 2 63 200 56 195 3.64e-14 73.9
MS.gene46390.t1 MTR_8g088930 35.955 178 114 0 86 263 12 189 8.59e-29 117
MS.gene46390.t1 MTR_8g088930 35.036 137 89 0 127 263 7 143 4.18e-19 89.0
MS.gene46390.t1 MTR_8g088930 36.364 143 83 2 63 200 56 195 3.45e-14 73.9
MS.gene46390.t1 MTR_8g088930 35.955 178 114 0 86 263 12 189 9.16e-29 117
MS.gene46390.t1 MTR_8g088930 35.036 137 89 0 127 263 7 143 5.12e-19 88.6
MS.gene46390.t1 MTR_8g088930 36.364 143 83 2 63 200 56 195 3.79e-14 73.9
MS.gene46390.t1 MTR_8g088930 35.955 178 114 0 86 263 12 189 9.44e-29 117
MS.gene46390.t1 MTR_8g088930 35.036 137 89 0 127 263 7 143 5.27e-19 88.6
MS.gene46390.t1 MTR_8g088930 36.364 143 83 2 63 200 56 195 3.94e-14 73.9
MS.gene46390.t1 MTR_8g092090 34.314 204 103 2 86 258 8 211 1.26e-27 108
MS.gene46390.t1 MTR_8g092090 36.478 159 101 0 75 233 74 232 9.18e-24 98.6
MS.gene46390.t1 MTR_8g092090 30.178 169 87 2 126 263 2 170 2.78e-13 68.9
MS.gene46390.t1 MTR_4g107460 33.333 210 116 2 77 262 22 231 2.84e-27 110
MS.gene46390.t1 MTR_4g107460 34.270 178 116 1 87 263 9 186 2.04e-23 99.4
MS.gene46390.t1 MTR_4g107460 31.148 183 123 1 75 254 90 272 4.15e-20 90.1
MS.gene46390.t1 MTR_1g050740 33.702 181 120 0 84 264 58 238 7.56e-26 108
MS.gene46390.t1 MTR_1g050740 32.961 179 117 1 85 263 82 257 7.91e-20 90.9
MS.gene46390.t1 MTR_3g073100 35.632 174 111 1 87 259 57 230 1.32e-24 105
MS.gene46390.t1 MTR_3g073100 37.931 116 72 0 148 263 73 188 1.21e-17 84.3
MS.gene46390.t1 MTR_8g039100 27.668 253 165 3 84 318 50 302 1.44e-24 105
MS.gene46390.t1 MTR_8g039100 35.862 145 92 1 120 263 39 183 6.25e-18 85.5
MS.gene46390.t1 MTR_5g459450 35.928 167 107 0 84 250 66 232 4.82e-24 103
MS.gene46390.t1 MTR_5g459450 36.719 128 81 0 135 262 71 198 1.14e-18 87.4
MS.gene46390.t1 MTR_5g459450 33.019 106 71 0 158 263 71 176 6.22e-12 67.0
MS.gene46390.t1 MTR_3g097260 36.994 173 109 0 87 259 55 227 6.34e-24 103
MS.gene46390.t1 MTR_3g097260 34.109 129 85 0 86 214 100 228 2.39e-14 74.3
MS.gene46390.t1 MTR_3g097260 36.719 128 81 0 135 262 57 184 7.36e-12 67.0
MS.gene46390.t1 MTR_7g089950 32.184 174 118 0 84 257 68 241 1.96e-23 101
MS.gene46390.t1 MTR_8g095240 29.707 239 132 4 61 263 22 260 1.13e-22 98.2
MS.gene46390.t1 MTR_8g095240 33.163 196 113 4 86 266 118 310 1.83e-22 97.8
MS.gene46390.t1 MTR_8g095240 31.383 188 119 1 84 261 1 188 1.13e-20 92.4
MS.gene46390.t1 MTR_8g095240 34.706 170 108 2 83 249 171 340 2.13e-20 91.7
MS.gene46390.t1 MTR_3g014650 32.432 185 109 2 84 268 86 254 2.15e-21 95.9
MS.gene46390.t1 MTR_3g014650 27.545 167 118 1 79 245 95 258 1.21e-13 72.4
MS.gene46390.t1 MTR_1g062740 30.049 203 134 2 85 279 72 274 1.60e-20 93.2
MS.gene46390.t1 MTR_1g062740 31.638 177 121 0 87 263 51 227 1.32e-19 90.5
MS.gene46390.t1 MTR_1g062740 29.592 196 131 3 74 262 8 203 2.97e-18 86.3
MS.gene46390.t1 MTR_8g095170 34.568 162 105 1 87 247 30 191 1.69e-20 92.8
MS.gene46390.t1 MTR_8g095170 39.130 115 70 0 148 262 46 160 6.86e-17 82.0
MS.gene46390.t1 MTR_8g095170 34.568 162 105 1 87 247 30 191 2.20e-20 92.4
MS.gene46390.t1 MTR_8g095170 39.130 115 70 0 148 262 46 160 9.15e-17 81.6
MS.gene46390.t1 MTR_8g080340 40.336 119 71 0 126 244 35 153 3.64e-20 86.7
MS.gene46390.t1 MTR_8g080340 34.959 123 80 0 138 260 24 146 1.60e-16 76.6
MS.gene46390.t1 MTR_8g080310 35.556 135 87 0 129 263 6 140 6.54e-20 85.5
MS.gene46390.t1 MTR_8g080310 31.579 152 104 0 83 234 6 157 4.58e-17 77.8
MS.gene46390.t1 MTR_6g043150 30.556 216 125 2 62 252 52 267 3.89e-19 87.0
MS.gene46390.t1 MTR_6g043150 35.227 176 112 2 83 257 6 180 1.07e-18 85.9
MS.gene46390.t1 MTR_6g043150 36.306 157 100 0 85 241 169 325 2.21e-18 85.1
MS.gene46390.t1 MTR_6g043150 34.074 135 89 0 127 261 4 138 5.42e-16 78.2
MS.gene46390.t1 MTR_2g078470 31.217 189 107 1 87 252 148 336 8.18e-19 86.7
MS.gene46390.t1 MTR_2g078470 32.386 176 119 0 87 262 79 254 2.53e-17 82.4
MS.gene46390.t1 MTR_2g078470 32.143 168 114 0 85 252 100 267 8.44e-17 80.9
MS.gene46390.t1 MTR_2g078470 30.457 197 114 1 84 257 7 203 1.09e-16 80.5
MS.gene46390.t1 MTR_2g078470 34.722 144 94 0 87 230 217 360 7.13e-14 72.4
MS.gene46390.t1 MTR_5g010840 32.955 176 110 1 87 262 181 348 2.86e-17 82.4
MS.gene46390.t1 MTR_5g010840 30.387 181 111 2 85 250 133 313 1.93e-15 77.0
MS.gene46390.t1 MTR_5g010840 30.636 173 119 1 76 247 207 379 1.66e-13 71.2
MS.gene46390.t1 MTR_5g010840 30.303 165 107 1 85 249 202 358 1.65e-12 68.2
MS.gene46390.t1 MTR_8g080350 31.481 162 86 2 115 253 87 246 2.96e-13 70.5
MS.gene46390.t1 MTR_8g080350 23.263 331 193 7 15 286 43 371 6.83e-13 69.3
MS.gene46390.t1 MTR_8g092410 31.210 157 95 4 127 279 135 282 4.67e-13 69.7
MS.gene46390.t1 MTR_8g092410 27.528 178 97 3 37 188 112 283 5.57e-12 66.6
MS.gene46390.t1 MTR_3g023310 33.871 124 69 1 126 249 12 122 6.91e-12 63.9
MS.gene46390.t1 MTR_3g023310 36.893 103 55 1 171 263 11 113 8.73e-12 63.5
MS.gene46390.t1 MTR_1g112280 29.787 141 99 0 129 269 609 749 7.10e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46390.t1 AT4G17080 65.705 312 99 2 26 331 192 501 8.79e-138 401
MS.gene46390.t1 AT2G35170 64.336 286 96 3 26 307 163 446 2.85e-129 378
MS.gene46390.t1 AT1G21920 54.799 323 116 5 26 333 103 410 2.67e-102 307
MS.gene46390.t1 AT1G21920 58.333 252 85 4 26 262 103 349 4.74e-99 297
MS.gene46390.t1 AT1G77660 54.294 326 116 8 26 333 104 414 4.24e-96 291
MS.gene46390.t1 AT1G21980 36.842 171 108 0 87 257 76 246 8.78e-28 114
MS.gene46390.t1 AT1G21980 37.500 128 80 0 135 262 78 205 5.47e-19 88.6
MS.gene46390.t1 AT1G21980 30.370 135 93 1 86 219 121 255 1.97e-11 65.5
MS.gene46390.t1 AT2G41210 36.207 174 111 0 84 257 67 240 2.73e-27 113
MS.gene46390.t1 AT2G41210 38.281 128 79 0 135 262 72 199 4.60e-20 91.7
MS.gene46390.t1 AT3G56960 32.955 176 118 0 84 259 69 244 1.96e-26 110
MS.gene46390.t1 AT3G56960 36.719 128 81 0 135 262 74 201 1.69e-19 90.1
MS.gene46390.t1 AT3G56960 32.955 176 118 0 84 259 69 244 1.96e-26 110
MS.gene46390.t1 AT3G56960 36.719 128 81 0 135 262 74 201 1.69e-19 90.1
MS.gene46390.t1 AT1G77740 35.673 171 110 0 87 257 77 247 2.96e-26 110
MS.gene46390.t1 AT1G77740 36.719 128 81 0 135 262 79 206 1.98e-17 84.0
MS.gene46390.t1 AT1G77740 33.962 106 70 0 158 263 79 184 5.30e-11 64.3
MS.gene46390.t1 AT1G77740 35.673 171 110 0 87 257 77 247 2.96e-26 110
MS.gene46390.t1 AT1G77740 36.719 128 81 0 135 262 79 206 1.98e-17 84.0
MS.gene46390.t1 AT1G77740 33.962 106 70 0 158 263 79 184 5.30e-11 64.3
MS.gene46390.t1 AT1G60890 34.270 178 94 1 84 261 8 162 1.05e-24 105
MS.gene46390.t1 AT1G60890 30.942 223 150 3 86 305 33 254 7.03e-24 103
MS.gene46390.t1 AT1G60890 34.270 178 94 1 84 261 20 174 1.11e-24 105
MS.gene46390.t1 AT1G60890 30.942 223 150 3 86 305 45 266 7.28e-24 103
MS.gene46390.t1 AT2G26420 34.392 189 120 2 84 272 50 234 6.01e-24 103
MS.gene46390.t1 AT2G26420 34.392 189 120 2 84 272 50 234 6.01e-24 103
MS.gene46390.t1 AT2G26420 34.392 189 120 2 84 272 50 234 6.34e-24 103
MS.gene46390.t1 AT1G10900 35.625 160 103 0 86 245 33 192 1.22e-23 102
MS.gene46390.t1 AT1G10900 34.831 178 116 0 86 263 10 187 2.96e-23 101
MS.gene46390.t1 AT1G10900 30.769 156 85 1 128 260 6 161 4.79e-15 76.6
MS.gene46390.t1 AT1G10900 32.639 144 89 2 62 200 53 193 1.30e-11 66.2
MS.gene46390.t1 AT1G10900 35.625 160 103 0 86 245 33 192 1.22e-23 102
MS.gene46390.t1 AT1G10900 34.831 178 116 0 86 263 10 187 2.96e-23 101
MS.gene46390.t1 AT1G10900 30.769 156 85 1 128 260 6 161 4.79e-15 76.6
MS.gene46390.t1 AT1G10900 32.639 144 89 2 62 200 53 193 1.30e-11 66.2
MS.gene46390.t1 AT1G10900 35.625 160 103 0 86 245 33 192 1.22e-23 102
MS.gene46390.t1 AT1G10900 34.831 178 116 0 86 263 10 187 2.96e-23 101
MS.gene46390.t1 AT1G10900 30.769 156 85 1 128 260 6 161 4.79e-15 76.6
MS.gene46390.t1 AT1G10900 32.639 144 89 2 62 200 53 193 1.30e-11 66.2
MS.gene46390.t1 AT3G07960 32.258 186 122 1 84 269 24 205 1.62e-23 102
MS.gene46390.t1 AT3G07960 32.258 186 122 1 84 269 24 205 1.62e-23 102
MS.gene46390.t1 AT3G07960 32.258 186 122 1 84 269 24 205 1.75e-23 101
MS.gene46390.t1 AT3G07960 32.258 186 122 1 84 269 24 205 2.30e-23 101
MS.gene46390.t1 AT3G09920 27.413 259 167 2 69 315 23 272 4.59e-21 94.7
MS.gene46390.t1 AT3G09920 29.808 208 134 3 85 283 74 278 2.96e-20 92.4
MS.gene46390.t1 AT3G09920 27.413 259 167 2 69 315 23 272 4.59e-21 94.7
MS.gene46390.t1 AT3G09920 29.808 208 134 3 85 283 74 278 2.96e-20 92.4
MS.gene46390.t1 AT3G09920 27.413 259 167 2 69 315 23 272 4.59e-21 94.7
MS.gene46390.t1 AT3G09920 29.808 208 134 3 85 283 74 278 2.96e-20 92.4
MS.gene46390.t1 AT3G09920 27.413 259 167 2 69 315 23 272 4.59e-21 94.7
MS.gene46390.t1 AT3G09920 29.808 208 134 3 85 283 74 278 2.96e-20 92.4

Find 89 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAGGACGGTACCATTTC+AGG 0.220617 8.4:+23815971 MS.gene46390:CDS
AGAGCTTAAATTCTGGATCT+TGG 0.306677 8.4:+23815611 MS.gene46390:CDS
CAACGTGTTGTATGGTCAAT+TGG 0.311671 8.4:+23815568 MS.gene46390:CDS
TTTGAAGGTGATTGGATTGA+TGG 0.327944 8.4:+23815730 MS.gene46390:CDS
TTTGGTGGTGATGTTTATAC+TGG 0.359699 8.4:+23815853 MS.gene46390:CDS
GAGCTTAAATTCTGGATCTT+GGG 0.376585 8.4:+23815612 MS.gene46390:CDS
CATATGAGTGGAAGATTTGA+AGG 0.378466 8.4:+23815715 MS.gene46390:CDS
AAGGGTTTGAGGCATGGAAT+TGG 0.379850 8.4:+23815817 MS.gene46390:CDS
GATTGAAACTTTGAGGTAAA+GGG 0.380834 8.4:-23815355 None:intergenic
TTTCATAAGGGGAAGTGCTC+AGG 0.382882 8.4:+23815673 MS.gene46390:CDS
ATTATGTTGGGGAATTCAAA+TGG 0.385157 8.4:+23815935 MS.gene46390:CDS
TCAACGATCTTGAGAAGAAT+AGG 0.388984 8.4:-23815513 None:intergenic
GTGGAAGATTTGAAGGTGAT+TGG 0.394569 8.4:+23815722 MS.gene46390:CDS
TGGGGTGTTAAACATGGATT+AGG 0.409371 8.4:+23815955 MS.gene46390:CDS
GGCATGGAATTGGAATTTAT+AGG 0.412594 8.4:+23815827 MS.gene46390:CDS
GGAGTTCATACTTGCAATGA+TGG 0.416556 8.4:+23815907 MS.gene46390:CDS
AAAAGCAAGACAGTCATATT+GGG 0.421127 8.4:+23817385 MS.gene46390:CDS
AATGGTCAGTGTCATGGCTT+TGG 0.421143 8.4:+23815886 MS.gene46390:CDS
TATGAAGGTGAGTTTCATAA+GGG 0.426937 8.4:+23815661 MS.gene46390:CDS
GAGTTAAAGAGCTTAAATTC+TGG 0.427388 8.4:+23815604 MS.gene46390:CDS
GCGGATATGATGCATGGCTT+TGG 0.433142 8.4:+23817225 MS.gene46390:CDS
TGCTTGAGAAGCGTTGTTCA+TGG 0.439654 8.4:-23815261 None:intergenic
TTATGAAGGTGAGTTTCATA+AGG 0.441190 8.4:+23815660 MS.gene46390:CDS
AGTGTGGTCACTGGCAGAAT+GGG 0.442429 8.4:+23817346 MS.gene46390:CDS
CATGCCACGCACCCTCATAT+CGG 0.449588 8.4:-23817272 None:intergenic
TCAGAATGGTCACCGATATG+AGG 0.450366 8.4:+23817260 MS.gene46390:CDS
CTCATCATCAACGTGTTGTA+TGG 0.452247 8.4:+23815560 MS.gene46390:CDS
AGATTGAAACTTTGAGGTAA+AGG 0.454037 8.4:-23815356 None:intergenic
GATGGAAAGTATGATGGGTT+TGG 0.464094 8.4:+23815748 MS.gene46390:CDS
GAATAATAAGCTTTCTTCAT+CGG 0.464931 8.4:+23815534 MS.gene46390:CDS
GTAGGTATCGTGGACAGTAT+AGG 0.468147 8.4:+23815794 MS.gene46390:CDS
TTATGTTGGGGAATTCAAAT+GGG 0.469276 8.4:+23815936 MS.gene46390:CDS
CAGTGTGGTCACTGGCAGAA+TGG 0.474325 8.4:+23817345 MS.gene46390:CDS
GTAAAGGGTATTGTAAAAGA+AGG 0.483157 8.4:-23815340 None:intergenic
TGGATTGATGGAAAGTATGA+TGG 0.494170 8.4:+23815742 MS.gene46390:CDS
ATGATGGGAGTCATTATGTT+GGG 0.495925 8.4:+23815923 MS.gene46390:CDS
AATGTCAAAGAAGGATGAAC+TGG 0.498099 8.4:+23818108 MS.gene46390:CDS
TGAAGGAAGAAGACAAGGAC+TGG 0.499777 8.4:+23817293 MS.gene46390:CDS
CTGGACAGCTTTGAAAACCT+TGG 0.499930 8.4:-23817430 None:intergenic
GGTGTATGAGATGGTGAAGA+TGG 0.507475 8.4:-23815289 None:intergenic
GGAGTCTATCAATTTCAGAA+TGG 0.507486 8.4:+23817246 MS.gene46390:CDS
AACGTGTTGTATGGTCAATT+GGG 0.513400 8.4:+23815569 MS.gene46390:CDS
TTCAAATGGGGTGTTAAACA+TGG 0.513973 8.4:+23815949 MS.gene46390:CDS
TGGGTTCAAGTTTACAGCAA+TGG 0.526362 8.4:+23815631 MS.gene46390:CDS
GTCAATTGGGTCAAAGGATG+AGG 0.530313 8.4:+23815582 MS.gene46390:CDS
CATATCCGCAAAATATTCTC+CGG 0.537617 8.4:-23817211 None:intergenic
TATAGGAAGGGTTTGAGGCA+TGG 0.542708 8.4:+23815811 MS.gene46390:CDS
TATGAGGGTGCGTGGCATGA+AGG 0.544188 8.4:+23817276 MS.gene46390:CDS
GTGATGTTTATACTGGTGAA+TGG 0.551261 8.4:+23815860 MS.gene46390:CDS
GACAGTATAGGAAGGGTTTG+AGG 0.555234 8.4:+23815806 MS.gene46390:CDS
GGGAAACACAGTGTGGTCAC+TGG 0.556623 8.4:+23817337 MS.gene46390:CDS
ATCCTTCTTTGACATTCCGT+AGG 0.560605 8.4:-23818101 None:intergenic
ATCATTGAACATTGTAATCA+CGG 0.560703 8.4:-23818213 None:intergenic
AAGGGGAAGTGCTCAGGGAG+TGG 0.561581 8.4:+23815679 MS.gene46390:CDS
GAGTTCATACTTGCAATGAT+GGG 0.567190 8.4:+23815908 MS.gene46390:CDS
AGCTAGAGTTGCAGCTGTGA+AGG 0.569793 8.4:+23818171 MS.gene46390:CDS
TTCATAAGGGGAAGTGCTCA+GGG 0.572490 8.4:+23815674 MS.gene46390:CDS
TATACTGGTGAATGGTGTAA+TGG 0.573863 8.4:+23815868 MS.gene46390:CDS
AGCAATGGTGATGTTTATGA+AGG 0.574309 8.4:+23815646 MS.gene46390:CDS
CAGAATGGTCACCGATATGA+GGG 0.575287 8.4:+23817261 MS.gene46390:CDS
CAGCTTTGAAAACCTTGGCA+TGG 0.579822 8.4:-23817425 None:intergenic
AGCCTACGGAATGTCAAAGA+AGG 0.581674 8.4:+23818099 MS.gene46390:CDS
GGATTGATGGAAAGTATGAT+GGG 0.582051 8.4:+23815743 MS.gene46390:CDS
ATGGGTTTGGTGTTGAAACG+TGG 0.586936 8.4:+23815761 MS.gene46390:CDS
GGTGTTGAAACGTGGGCTAG+AGG 0.588676 8.4:+23815769 MS.gene46390:CDS
TTGTGTGTAGGTGTATGAGA+TGG 0.591599 8.4:-23815298 None:intergenic
TGTATGGTCAATTGGGTCAA+AGG 0.595542 8.4:+23815576 MS.gene46390:CDS
AGAAATGGGGACATATATGC+CGG 0.598656 8.4:+23817192 MS.gene46390:intron
AAACGTGGGCTAGAGGAAGT+AGG 0.599270 8.4:+23815776 MS.gene46390:CDS
TGGTGTAATGGTCAGTGTCA+TGG 0.600058 8.4:+23815880 MS.gene46390:CDS
GAAGGAAGAAGACAAGGACT+GGG 0.603856 8.4:+23817294 MS.gene46390:CDS
GTATCGTGGACAGTATAGGA+AGG 0.617143 8.4:+23815798 MS.gene46390:CDS
TGAACAGGATGCTCATTGTG+CGG 0.617594 8.4:+23818069 MS.gene46390:intron
GTCACCGATATGAGGGTGCG+TGG 0.630941 8.4:+23817268 MS.gene46390:CDS
AATGATGGGAGTCATTATGT+TGG 0.635184 8.4:+23815922 MS.gene46390:CDS
TTGTTATTACTGCAGAAATG+GGG 0.635687 8.4:+23817179 MS.gene46390:intron
TGATGGGAGTCATTATGTTG+GGG 0.636425 8.4:+23815924 MS.gene46390:CDS
TGTGCGGCGGAGAAAGCCTA+CGG 0.641747 8.4:+23818085 MS.gene46390:CDS
TTGGCATGGTCTACAGCACA+TGG 0.645980 8.4:-23817411 None:intergenic
ATGTGCTGTAGACCATGCCA+AGG 0.647382 8.4:+23817413 MS.gene46390:CDS
TATCGTGGACAGTATAGGAA+GGG 0.648017 8.4:+23815799 MS.gene46390:CDS
TATGTTGGGGAATTCAAATG+GGG 0.656507 8.4:+23815937 MS.gene46390:CDS
TGGCATGAAGGAAGAAGACA+AGG 0.660942 8.4:+23817288 MS.gene46390:CDS
TGGGTTTGGTGTTGAAACGT+GGG 0.670518 8.4:+23815762 MS.gene46390:CDS
ATGAAGGTGAGTTTCATAAG+GGG 0.671828 8.4:+23815662 MS.gene46390:CDS
GCTAGAGGAAGTAGGTATCG+TGG 0.672052 8.4:+23815784 MS.gene46390:CDS
GTGTTAAACATGGATTAGGA+CGG 0.683306 8.4:+23815959 MS.gene46390:CDS
ACAGGATGCTCATTGTGCGG+CGG 0.690381 8.4:+23818072 MS.gene46390:intron
AGAAACGGGGAAACACAGTG+TGG 0.759758 8.4:+23817330 MS.gene46390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTTTTTATGAATTAAA+AGG + chr8.4:23817537-23817556 MS.gene46390:intron 10.0%
!!! TTACTTTTTATGAATTAAAA+GGG + chr8.4:23817538-23817557 MS.gene46390:intron 10.0%
!!! AAGAGAATTTACTTTTATTT+GGG + chr8.4:23816302-23816321 MS.gene46390:intron 15.0%
!!! CAAAGCTTTATATAAAAAAT+GGG - chr8.4:23816481-23816500 None:intergenic 15.0%
!!! TAAGAGAATTTACTTTTATT+TGG + chr8.4:23816301-23816320 MS.gene46390:intron 15.0%
!! AAGTAAAAAATGATGAAATC+AGG - chr8.4:23817687-23817706 None:intergenic 20.0%
!! AATACAGATAAAAATCAAAC+TGG - chr8.4:23816886-23816905 None:intergenic 20.0%
!! AGTAAAAAATGATGAAATCA+GGG - chr8.4:23817686-23817705 None:intergenic 20.0%
!! ATGTCAATCAAATTGAATAA+TGG - chr8.4:23817061-23817080 None:intergenic 20.0%
!! CATAGTTATTACTTATTGTT+TGG - chr8.4:23818018-23818037 None:intergenic 20.0%
!! CTTAAAATGAACACAAAATT+GGG - chr8.4:23816285-23816304 None:intergenic 20.0%
!! TCTTAAAATGAACACAAAAT+TGG - chr8.4:23816286-23816305 None:intergenic 20.0%
!! TGTCAATCAAATTGAATAAT+GGG - chr8.4:23817060-23817079 None:intergenic 20.0%
!!! AGTTCAAAATTGTATTTTAG+TGG - chr8.4:23816132-23816151 None:intergenic 20.0%
!!! ATCATTTTTTACTTTCTACT+TGG + chr8.4:23817693-23817712 MS.gene46390:intron 20.0%
!!! ATTGGAATTTATAGGTTTTT+TGG + chr8.4:23815835-23815854 MS.gene46390:CDS 20.0%
!!! CATGATTATATATTGTTTTG+TGG + chr8.4:23817576-23817595 MS.gene46390:intron 20.0%
!!! CCAAAGCTTTATATAAAAAA+TGG - chr8.4:23816482-23816501 None:intergenic 20.0%
!!! CCATTTTTTATATAAAGCTT+TGG + chr8.4:23816479-23816498 MS.gene46390:intron 20.0%
!!! TCATTTTTTACTTTCTACTT+GGG + chr8.4:23817694-23817713 MS.gene46390:intron 20.0%
! AAAAAAGAACTAACCTGAAA+TGG - chr8.4:23815987-23816006 None:intergenic 25.0%
! AAACAGTCTTACAAATATGA+TGG - chr8.4:23817791-23817810 None:intergenic 25.0%
! ATCATATTTGTAAGACTGTT+TGG + chr8.4:23817790-23817809 MS.gene46390:intron 25.0%
! ATTTACTTTCAAAAGCCAAA+AGG + chr8.4:23816726-23816745 MS.gene46390:intron 25.0%
! CTAGCAATGTATAATGTAAT+TGG + chr8.4:23817083-23817102 MS.gene46390:intron 25.0%
! GAATAATAAGCTTTCTTCAT+CGG + chr8.4:23815534-23815553 MS.gene46390:CDS 25.0%
! TAAAATACTTGGAAAGTGAT+TGG + chr8.4:23816922-23816941 MS.gene46390:intron 25.0%
! TCATATTTGTAAGACTGTTT+GGG + chr8.4:23817791-23817810 MS.gene46390:intron 25.0%
! TGTATGTGTTTCTTCTAAAT+AGG + chr8.4:23816822-23816841 MS.gene46390:intron 25.0%
! TTATGTGAAAAACTACTGTA+AGG + chr8.4:23817513-23817532 MS.gene46390:intron 25.0%
! TTGTATCTAGCTAAAATACT+TGG + chr8.4:23816911-23816930 MS.gene46390:intron 25.0%
! TTTCATAAACTATCTTACAG+AGG - chr8.4:23817875-23817894 None:intergenic 25.0%
!! AGATTTGACATTATCTGTTT+TGG + chr8.4:23816157-23816176 MS.gene46390:intron 25.0%
!! GTTTATCATTTTCATATGAG+TGG + chr8.4:23815703-23815722 MS.gene46390:CDS 25.0%
!!! AAAAGAAGGTTTGTTTTGAT+GGG - chr8.4:23815329-23815348 None:intergenic 25.0%
!!! ATTTGTTATTACTGCAGAAA+TGG + chr8.4:23817177-23817196 MS.gene46390:intron 25.0%
!!! GATATTTATTTAGCTTTGGT+AGG + chr8.4:23816597-23816616 MS.gene46390:intron 25.0%
!!! GTACTTCTTTAATTTTGAAC+AGG + chr8.4:23818054-23818073 MS.gene46390:intron 25.0%
!!! TAAAAGAAGGTTTGTTTTGA+TGG - chr8.4:23815330-23815349 None:intergenic 25.0%
!!! TTTGTTATTACTGCAGAAAT+GGG + chr8.4:23817178-23817197 MS.gene46390:intron 25.0%
AAAAAGCAAGACAGTCATAT+TGG + chr8.4:23817384-23817403 MS.gene46390:CDS 30.0%
AAAAGCAAGACAGTCATATT+GGG + chr8.4:23817385-23817404 MS.gene46390:CDS 30.0%
AAGAGAAAATCAAGAAGAGT+TGG - chr8.4:23815454-23815473 None:intergenic 30.0%
ATCCAAAAATGACTATTACC+TGG - chr8.4:23817452-23817471 None:intergenic 30.0%
ATTAACCACGATTCAGTATT+TGG + chr8.4:23816765-23816784 MS.gene46390:intron 30.0%
ATTATGTTGGGGAATTCAAA+TGG + chr8.4:23815935-23815954 MS.gene46390:CDS 30.0%
CTTGAAAGATTGAAACTTTG+AGG - chr8.4:23815365-23815384 None:intergenic 30.0%
GAGTTAAAGAGCTTAAATTC+TGG + chr8.4:23815604-23815623 MS.gene46390:CDS 30.0%
GGTTGAGACATTATATAGTT+TGG - chr8.4:23816865-23816884 None:intergenic 30.0%
GTCAAATTCTTCACATATAG+TGG + chr8.4:23816439-23816458 MS.gene46390:intron 30.0%
TAATTGTGTCAATGTCAAGT+CGG + chr8.4:23816337-23816356 MS.gene46390:intron 30.0%
TATGAAGGTGAGTTTCATAA+GGG + chr8.4:23815661-23815680 MS.gene46390:CDS 30.0%
TGAAAAGAGAAAGTAAAGAG+AGG - chr8.4:23815428-23815447 None:intergenic 30.0%
TTATGAAGGTGAGTTTCATA+AGG + chr8.4:23815660-23815679 MS.gene46390:CDS 30.0%
TTATGTTGGGGAATTCAAAT+GGG + chr8.4:23815936-23815955 MS.gene46390:CDS 30.0%
! GTATACTTTTCTGCTTTCAT+GGG + chr8.4:23816787-23816806 MS.gene46390:intron 30.0%
! TAACCATTCTGATAATGCTA+AGG - chr8.4:23816048-23816067 None:intergenic 30.0%
! TTGTTATTACTGCAGAAATG+GGG + chr8.4:23817179-23817198 MS.gene46390:intron 30.0%
!! AATCACTTTTACAAGTTCAG+CGG + chr8.4:23816573-23816592 MS.gene46390:intron 30.0%
!! AATGTACACTTTTAGAAACG+GGG + chr8.4:23817317-23817336 MS.gene46390:CDS 30.0%
!! AGATTGAAACTTTGAGGTAA+AGG - chr8.4:23815359-23815378 None:intergenic 30.0%
!! GAATGTACACTTTTAGAAAC+GGG + chr8.4:23817316-23817335 MS.gene46390:CDS 30.0%
!! GATTGAAACTTTGAGGTAAA+GGG - chr8.4:23815358-23815377 None:intergenic 30.0%
!! GGAATGTACACTTTTAGAAA+CGG + chr8.4:23817315-23817334 MS.gene46390:CDS 30.0%
!! GTAAAGGGTATTGTAAAAGA+AGG - chr8.4:23815343-23815362 None:intergenic 30.0%
!! TGTTGATTCTTTGTTAAGTG+TGG + chr8.4:23816070-23816089 MS.gene46390:intron 30.0%
!!! ATATGACTGTCTTGCTTTTT+AGG - chr8.4:23817384-23817403 None:intergenic 30.0%
!!! GGAATTTATAGGTTTTTTGG+TGG + chr8.4:23815838-23815857 MS.gene46390:CDS 30.0%
!!! TATGACTGTCTTGCTTTTTA+GGG - chr8.4:23817383-23817402 None:intergenic 30.0%
AAATCAGGGAATGTCTATTC+AGG - chr8.4:23817672-23817691 None:intergenic 35.0%
AACGTGTTGTATGGTCAATT+GGG + chr8.4:23815569-23815588 MS.gene46390:CDS 35.0%
AACTTGACCATATTCTTGCA+CGG - chr8.4:23817003-23817022 None:intergenic 35.0%
AATGTCAAAGAAGGATGAAC+TGG + chr8.4:23818108-23818127 MS.gene46390:CDS 35.0%
ACTTGTAAAAGTGATTGGCA+AGG - chr8.4:23816569-23816588 None:intergenic 35.0%
AGAGCTTAAATTCTGGATCT+TGG + chr8.4:23815611-23815630 MS.gene46390:CDS 35.0%
ATAGTGGTCATTGTGATTCT+AGG + chr8.4:23816455-23816474 MS.gene46390:intron 35.0%
ATCGTGGTTAATGAGAAACT+AGG - chr8.4:23816757-23816776 None:intergenic 35.0%
ATGAAGGTGAGTTTCATAAG+GGG + chr8.4:23815662-23815681 MS.gene46390:CDS 35.0%
CAGGTTGTTGAAAATTTGAG+TGG - chr8.4:23816518-23816537 None:intergenic 35.0%
CATATCCGCAAAATATTCTC+CGG - chr8.4:23817214-23817233 None:intergenic 35.0%
CATATGAGTGGAAGATTTGA+AGG + chr8.4:23815715-23815734 MS.gene46390:CDS 35.0%
CTAGTACAACAGAATGTTGT+TGG - chr8.4:23816649-23816668 None:intergenic 35.0%
CTTTCAAAAGCCAAAAGGAT+TGG + chr8.4:23816731-23816750 MS.gene46390:intron 35.0%
GAGAAAGTAAAGAGAGGTTA+AGG - chr8.4:23815422-23815441 None:intergenic 35.0%
GAGCTTAAATTCTGGATCTT+GGG + chr8.4:23815612-23815631 MS.gene46390:CDS 35.0%
GAGTTCATACTTGCAATGAT+GGG + chr8.4:23815908-23815927 MS.gene46390:CDS 35.0%
GCAAGGTAAATGAATCAAAC+AGG - chr8.4:23816552-23816571 None:intergenic 35.0%
GCTGAACTTGTAAAAGTGAT+TGG - chr8.4:23816574-23816593 None:intergenic 35.0%
GCTGCAAACACTTAATTAAG+TGG + chr8.4:23817987-23818006 MS.gene46390:intron 35.0%
GGAGTCTATCAATTTCAGAA+TGG + chr8.4:23817246-23817265 MS.gene46390:CDS 35.0%
GGCATGGAATTGGAATTTAT+AGG + chr8.4:23815827-23815846 MS.gene46390:CDS 35.0%
GTATACCAAATACTGAATCG+TGG - chr8.4:23816773-23816792 None:intergenic 35.0%
GTCAATTAAAATAAGCCCTC+AGG - chr8.4:23817742-23817761 None:intergenic 35.0%
GTGATGTTTATACTGGTGAA+TGG + chr8.4:23815860-23815879 MS.gene46390:CDS 35.0%
GTTCCTTAGCATTATCAGAA+TGG + chr8.4:23816042-23816061 MS.gene46390:intron 35.0%
TATACTGGTGAATGGTGTAA+TGG + chr8.4:23815868-23815887 MS.gene46390:CDS 35.0%
TATGTTGGGGAATTCAAATG+GGG + chr8.4:23815937-23815956 MS.gene46390:CDS 35.0%
TCAACGATCTTGAGAAGAAT+AGG - chr8.4:23815516-23815535 None:intergenic 35.0%
TGTTGTTGGCATTGTTTGTT+CGG - chr8.4:23816635-23816654 None:intergenic 35.0%
TTCTTTGTTAAGTGTGGACT+TGG + chr8.4:23816076-23816095 MS.gene46390:intron 35.0%
TTTGAAGGTGATTGGATTGA+TGG + chr8.4:23815730-23815749 MS.gene46390:CDS 35.0%
! AATGATGGGAGTCATTATGT+TGG + chr8.4:23815922-23815941 MS.gene46390:CDS 35.0%
! AGCAATGGTGATGTTTATGA+AGG + chr8.4:23815646-23815665 MS.gene46390:CDS 35.0%
! ATATGCCGGAGAATATTTTG+CGG + chr8.4:23817206-23817225 MS.gene46390:CDS 35.0%
! ATGATGGGAGTCATTATGTT+GGG + chr8.4:23815923-23815942 MS.gene46390:CDS 35.0%
! CGGCGATATTTATTTAGCTT+TGG + chr8.4:23816593-23816612 MS.gene46390:intron 35.0%
! CTCAAATTTTCAACAACCTG+TGG + chr8.4:23816518-23816537 MS.gene46390:intron 35.0%
! CTGACTTCAATCTGAAGTAT+TGG + chr8.4:23816386-23816405 MS.gene46390:intron 35.0%
! GGATTGATGGAAAGTATGAT+GGG + chr8.4:23815743-23815762 MS.gene46390:CDS 35.0%
! GGTATACTTTTCTGCTTTCA+TGG + chr8.4:23816786-23816805 MS.gene46390:intron 35.0%
! TATTTTGCGGATATGATGCA+TGG + chr8.4:23817219-23817238 MS.gene46390:CDS 35.0%
! TGGATTGATGGAAAGTATGA+TGG + chr8.4:23815742-23815761 MS.gene46390:CDS 35.0%
! TTCAAATGGGGTGTTAAACA+TGG + chr8.4:23815949-23815968 MS.gene46390:CDS 35.0%
!! GTCCAGGTAATAGTCATTTT+TGG + chr8.4:23817447-23817466 MS.gene46390:intron 35.0%
!! GTGTTAAACATGGATTAGGA+CGG + chr8.4:23815959-23815978 MS.gene46390:CDS 35.0%
!! TTTGGTGGTGATGTTTATAC+TGG + chr8.4:23815853-23815872 MS.gene46390:CDS 35.0%
ACTGTATCCGTGCAAGAATA+TGG + chr8.4:23816993-23817012 MS.gene46390:intron 40.0%
AGAAATGGGGACATATATGC+CGG + chr8.4:23817192-23817211 MS.gene46390:intron 40.0%
AGCTGTCGAAGCTAATTTCA+AGG - chr8.4:23817141-23817160 None:intergenic 40.0%
AGTCAGATTGAATGCATGTC+TGG - chr8.4:23816372-23816391 None:intergenic 40.0%
ATCCTTCTTTGACATTCCGT+AGG - chr8.4:23818104-23818123 None:intergenic 40.0%
ATGGCAACACCAAAGATACA+AGG - chr8.4:23817606-23817625 None:intergenic 40.0%
ATGTCCATCACGAATCATGA+TGG - chr8.4:23817625-23817644 None:intergenic 40.0%
CAACGTGTTGTATGGTCAAT+TGG + chr8.4:23815568-23815587 MS.gene46390:CDS 40.0%
CTCATCATCAACGTGTTGTA+TGG + chr8.4:23815560-23815579 MS.gene46390:CDS 40.0%
GGAGTTCATACTTGCAATGA+TGG + chr8.4:23815907-23815926 MS.gene46390:CDS 40.0%
GTGGAAGATTTGAAGGTGAT+TGG + chr8.4:23815722-23815741 MS.gene46390:CDS 40.0%
GTTAAGTGTGGACTTGGATT+AGG + chr8.4:23816082-23816101 MS.gene46390:intron 40.0%
TACTTTCTACTTGGGCTTTC+TGG + chr8.4:23817702-23817721 MS.gene46390:intron 40.0%
TATCGTGGACAGTATAGGAA+GGG + chr8.4:23815799-23815818 MS.gene46390:CDS 40.0%
TGATGGGAGTCATTATGTTG+GGG + chr8.4:23815924-23815943 MS.gene46390:CDS 40.0%
TGTATGGTCAATTGGGTCAA+AGG + chr8.4:23815576-23815595 MS.gene46390:CDS 40.0%
TGTCGAAGCTAATTTCAAGG+AGG - chr8.4:23817138-23817157 None:intergenic 40.0%
TGTGGCTTTCCTTGTATCTT+TGG + chr8.4:23817594-23817613 MS.gene46390:intron 40.0%
TTGTGTGTAGGTGTATGAGA+TGG - chr8.4:23815301-23815320 None:intergenic 40.0%
! AGAAACTAGGCCAATCCTTT+TGG - chr8.4:23816744-23816763 None:intergenic 40.0%
! ATAAGCCCTCAGGTTGTTTA+AGG - chr8.4:23817732-23817751 None:intergenic 40.0%
! TGGGGTGTTAAACATGGATT+AGG + chr8.4:23815955-23815974 MS.gene46390:CDS 40.0%
! TGGGTTCAAGTTTACAGCAA+TGG + chr8.4:23815631-23815650 MS.gene46390:CDS 40.0%
!! GATGGAAAGTATGATGGGTT+TGG + chr8.4:23815748-23815767 MS.gene46390:CDS 40.0%
!!! GTTTTGGTTAAGTGTGCTTC+TGG + chr8.4:23816173-23816192 MS.gene46390:intron 40.0%
!!! TGATGGGTTTTGTTGTGTGT+AGG - chr8.4:23815313-23815332 None:intergenic 40.0%
AATGGTCAGTGTCATGGCTT+TGG + chr8.4:23815886-23815905 MS.gene46390:CDS 45.0%
AGCCTACGGAATGTCAAAGA+AGG + chr8.4:23818099-23818118 MS.gene46390:CDS 45.0%
CAGAATGGTCACCGATATGA+GGG + chr8.4:23817261-23817280 MS.gene46390:CDS 45.0%
GAAGGAAGAAGACAAGGACT+GGG + chr8.4:23817294-23817313 MS.gene46390:CDS 45.0%
GACAGTATAGGAAGGGTTTG+AGG + chr8.4:23815806-23815825 MS.gene46390:CDS 45.0%
GATTAGGACGGTACCATTTC+AGG + chr8.4:23815971-23815990 MS.gene46390:CDS 45.0%
GGTGTATGAGATGGTGAAGA+TGG - chr8.4:23815292-23815311 None:intergenic 45.0%
GTATCGTGGACAGTATAGGA+AGG + chr8.4:23815798-23815817 MS.gene46390:CDS 45.0%
GTCAATTGGGTCAAAGGATG+AGG + chr8.4:23815582-23815601 MS.gene46390:CDS 45.0%
GTGGACCTTAAACAACCTGA+GGG + chr8.4:23817724-23817743 MS.gene46390:intron 45.0%
GTTGCCATCATGATTCGTGA+TGG + chr8.4:23817618-23817637 MS.gene46390:intron 45.0%
TCAGAATGGTCACCGATATG+AGG + chr8.4:23817260-23817279 MS.gene46390:CDS 45.0%
TGAACAGGATGCTCATTGTG+CGG + chr8.4:23818069-23818088 MS.gene46390:intron 45.0%
TGAAGGAAGAAGACAAGGAC+TGG + chr8.4:23817293-23817312 MS.gene46390:CDS 45.0%
TGGCATGAAGGAAGAAGACA+AGG + chr8.4:23817288-23817307 MS.gene46390:CDS 45.0%
TGGTGTAATGGTCAGTGTCA+TGG + chr8.4:23815880-23815899 MS.gene46390:CDS 45.0%
TGTCAATGTCAAGTCGGTGT+CGG + chr8.4:23816343-23816362 MS.gene46390:intron 45.0%
TTTCTACTTGGGCTTTCTGG+TGG + chr8.4:23817705-23817724 MS.gene46390:intron 45.0%
! AAGGGTTTGAGGCATGGAAT+TGG + chr8.4:23815817-23815836 MS.gene46390:CDS 45.0%
! CAAGGTTTTCAAAGCTGTCC+AGG + chr8.4:23817431-23817450 MS.gene46390:CDS 45.0%
! GTAGGTATCGTGGACAGTAT+AGG + chr8.4:23815794-23815813 MS.gene46390:CDS 45.0%
! TATAGGAAGGGTTTGAGGCA+TGG + chr8.4:23815811-23815830 MS.gene46390:CDS 45.0%
! TTCTGGTTGTTTGATGCAGC+AGG + chr8.4:23816190-23816209 MS.gene46390:intron 45.0%
!! ATGGGTTTGGTGTTGAAACG+TGG + chr8.4:23815761-23815780 MS.gene46390:CDS 45.0%
!! CAGCTTTGAAAACCTTGGCA+TGG - chr8.4:23817428-23817447 None:intergenic 45.0%
!! CTGGACAGCTTTGAAAACCT+TGG - chr8.4:23817433-23817452 None:intergenic 45.0%
!! GCAGCAGGACTTTGATTTTC+TGG + chr8.4:23816205-23816224 MS.gene46390:intron 45.0%
!! TGGGTTTGGTGTTGAAACGT+GGG + chr8.4:23815762-23815781 MS.gene46390:CDS 45.0%
!! TTCATAAGGGGAAGTGCTCA+GGG + chr8.4:23815674-23815693 MS.gene46390:CDS 45.0%
!! TTTCATAAGGGGAAGTGCTC+AGG + chr8.4:23815673-23815692 MS.gene46390:CDS 45.0%
AGAAACGGGGAAACACAGTG+TGG + chr8.4:23817330-23817349 MS.gene46390:CDS 50.0%
AGCTAGAGTTGCAGCTGTGA+AGG + chr8.4:23818171-23818190 MS.gene46390:CDS 50.0%
AGTGTGGTCACTGGCAGAAT+GGG + chr8.4:23817346-23817365 MS.gene46390:CDS 50.0%
ATGTGCTGTAGACCATGCCA+AGG + chr8.4:23817413-23817432 MS.gene46390:CDS 50.0%
CAAACAGGTGCTTCAACCAC+AGG - chr8.4:23816537-23816556 None:intergenic 50.0%
GCGGATATGATGCATGGCTT+TGG + chr8.4:23817225-23817244 MS.gene46390:CDS 50.0%
GGTGGACCTTAAACAACCTG+AGG + chr8.4:23817723-23817742 MS.gene46390:intron 50.0%
TTGGCATGGTCTACAGCACA+TGG - chr8.4:23817414-23817433 None:intergenic 50.0%
! GCTAGAGGAAGTAGGTATCG+TGG + chr8.4:23815784-23815803 MS.gene46390:CDS 50.0%
!! AAACGTGGGCTAGAGGAAGT+AGG + chr8.4:23815776-23815795 MS.gene46390:CDS 50.0%
ACAGGATGCTCATTGTGCGG+CGG + chr8.4:23818072-23818091 MS.gene46390:intron 55.0%
CAGTGTGGTCACTGGCAGAA+TGG + chr8.4:23817345-23817364 MS.gene46390:CDS 55.0%
CATGCCACGCACCCTCATAT+CGG - chr8.4:23817275-23817294 None:intergenic 55.0%
GGGAAACACAGTGTGGTCAC+TGG + chr8.4:23817337-23817356 MS.gene46390:CDS 55.0%
! TATGAGGGTGCGTGGCATGA+AGG + chr8.4:23817276-23817295 MS.gene46390:CDS 55.0%
!! GGTGTTGAAACGTGGGCTAG+AGG + chr8.4:23815769-23815788 MS.gene46390:CDS 55.0%
TGTGCGGCGGAGAAAGCCTA+CGG + chr8.4:23818085-23818104 MS.gene46390:CDS 60.0%
! GTCACCGATATGAGGGTGCG+TGG + chr8.4:23817268-23817287 MS.gene46390:CDS 60.0%
!! AAGGGGAAGTGCTCAGGGAG+TGG + chr8.4:23815679-23815698 MS.gene46390:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 23815263 23818234 23815263 ID=MS.gene46390
chr8.4 mRNA 23815263 23818234 23815263 ID=MS.gene46390.t1;Parent=MS.gene46390
chr8.4 exon 23815263 23815368 23815263 ID=MS.gene46390.t1.exon1;Parent=MS.gene46390.t1
chr8.4 CDS 23815263 23815368 23815263 ID=cds.MS.gene46390.t1;Parent=MS.gene46390.t1
chr8.4 exon 23815494 23815992 23815494 ID=MS.gene46390.t1.exon2;Parent=MS.gene46390.t1
chr8.4 CDS 23815494 23815992 23815494 ID=cds.MS.gene46390.t1;Parent=MS.gene46390.t1
chr8.4 exon 23817194 23817452 23817194 ID=MS.gene46390.t1.exon3;Parent=MS.gene46390.t1
chr8.4 CDS 23817194 23817452 23817194 ID=cds.MS.gene46390.t1;Parent=MS.gene46390.t1
chr8.4 exon 23818076 23818234 23818076 ID=MS.gene46390.t1.exon4;Parent=MS.gene46390.t1
chr8.4 CDS 23818076 23818234 23818076 ID=cds.MS.gene46390.t1;Parent=MS.gene46390.t1
Gene Sequence

>MS.gene46390

ATGAACAACGCTTCTCAAGCAACACTCCATCTTCACCATCTCATACACCTACACACAACAAAACCCATCAAAACAAACCTTCTTTTACAATACCCTTTACCTCAAAGTTTCAATCTTTCAAGCTTCTCACACGTTTTCATTTCATCATCTTCATTTCCTTAACCTCTCTTTACTTTCTCTTTTCACATCCAACTCTTCTTGATTTTCTCTTTGTGCTACTTTTCTCATCAGCAATTTTTGTTTCTATCAACCTATTCTTCTCAAGATCGTTGAATAATAAGCTTTCTTCATCGGATTCTCATCATCAACGTGTTGTATGGTCAATTGGGTCAAAGGATGAGGAGTTAAAGAGCTTAAATTCTGGATCTTGGGTTCAAGTTTACAGCAATGGTGATGTTTATGAAGGTGAGTTTCATAAGGGGAAGTGCTCAGGGAGTGGTGTTTATCATTTTCATATGAGTGGAAGATTTGAAGGTGATTGGATTGATGGAAAGTATGATGGGTTTGGTGTTGAAACGTGGGCTAGAGGAAGTAGGTATCGTGGACAGTATAGGAAGGGTTTGAGGCATGGAATTGGAATTTATAGGTTTTTTGGTGGTGATGTTTATACTGGTGAATGGTGTAATGGTCAGTGTCATGGCTTTGGAGTTCATACTTGCAATGATGGGAGTCATTATGTTGGGGAATTCAAATGGGGTGTTAAACATGGATTAGGACGGTACCATTTCAGGTTAGTTCTTTTTTTGTGTTTTGTTTTTTAGTTTACAGTACAGTTGCTTGTTCCTTAGCATTATCAGAATGGTTATTTGTTGATTCTTTGTTAAGTGTGGACTTGGATTAGGTGTTTTAATTTGATCATGAATTTGCCACTAAAATACAATTTTGAACTTGTAGAGATTTGACATTATCTGTTTTGGTTAAGTGTGCTTCTGGTTGTTTGATGCAGCAGGACTTTGATTTTCTGGATTGAAGTTGTTAACTTTTCATTAACTAAGATTTTCTGTATGCATCTTATTCAACCCAATTTTGTGTTCATTTTAAGAGAATTTACTTTTATTTGGGCAGAGTTTTAGATAATTGTGTCAATGTCAAGTCGGTGTCGGATACCAGACATGCATTCAATCTGACTTCAATCTGAAGTATTGGTGTCTTCAATATGAAGTATCAGTGCTACAAGTCAAATTCTTCACATATAGTGGTCATTGTGATTCTAGGCCCATTTTTTATATAAAGCTTTGGTTGTAAAAAAAGACCACTCAAATTTTCAACAACCTGTGGTTGAAGCACCTGTTTGATTCATTTACCTTGCCAATCACTTTTACAAGTTCAGCGGCGATATTTATTTAGCTTTGGTAGGCTTAATAGCTAGCCGAACAAACAATGCCAACAACATTCTGTTGTACTAGCTCACATGATATATTTTCTTTTGTATTTTACTTTGATGTTCAATCAATTTATAAAAGATTTACTTTCAAAAGCCAAAAGGATTGGCCTAGTTTCTCATTAACCACGATTCAGTATTTGGTATACTTTTCTGCTTTCATGGGACAAACTCTGCATGTATGTGTTTCTTCTAAATAGGAAGAATTGTTAAGAATACCAAACTATATAATGTCTCAACCAGTTTGATTTTTATCTGTATTTTATGTTGTATCTAGCTAAAATACTTGGAAAGTGATTGGAATATTGAATCTGTTTGTAGTGATGTAAATGTGCTTGATATTTCTGTTACTGTATCCGTGCAAGAATATGGTCAAGTTGTGTTCTTCAATCTTACATCATTATTAGCTTGAACCCATTATTCAATTTGATTGACATTTCTAGCAATGTATAATGTAATTGGCTTTTTTTTTATCATGATTGAAAGAACAACCTCCTTGAAATTAGCTTCGACAGCTATTTTTAAATTTATATATTTGTTATTACTGCAGAAATGGGGACATATATGCCGGAGAATATTTTGCGGATATGATGCATGGCTTTGGAGTCTATCAATTTCAGAATGGTCACCGATATGAGGGTGCGTGGCATGAAGGAAGAAGACAAGGACTGGGAATGTACACTTTTAGAAACGGGGAAACACAGTGTGGTCACTGGCAGAATGGGATTCTTGATAACCCTAAAAAGCAAGACAGTCATATTGGGTCTCCATGTGCTGTAGACCATGCCAAGGTTTTCAAAGCTGTCCAGGTAATAGTCATTTTTGGATTTTTGCACATATATGATTGATCAATACATGTTACTAGATACTTATGTGAAAAACTACTGTAAGGTATTACTTTTTATGAATTAAAAGGGAATTAAAAACAGAAACATGATTATATATTGTTTTGTGGCTTTCCTTGTATCTTTGGTGTTGCCATCATGATTCGTGATGGACATTCAAATAATGAAATCAGAAAGAAACCTGAATAGACATTCCCTGATTTCATCATTTTTTACTTTCTACTTGGGCTTTCTGGTGGACCTTAAACAACCTGAGGGCTTATTTTAATTGACTAATTTGAGCTTATCTACTGTATAAACCATCATATTTGTAAGACTGTTTGGGAGAGCTTATGTGAACAACTTATAACATATCGTAGATTTTTTTCTGCTTATTTTCATAACCTCTGTAAGATAGTTTATGAAAACAGCTTATAACTTATATAAACAATTTTGCTTTATTTTATCTTTTGTTGTGAAAATAGTTTATACATGAGCACTTATGTGAAAAGTATTGATGCTGCAAACACTTAATTAAGTGGTTTATCCAAACAATAAGTAATAACTATGAGAAATGTAATATTTAGTACTTCTTTAATTTTGAACAGGATGCTCATTGTGCGGCGGAGAAAGCCTACGGAATGTCAAAGAAGGATGAACTGGTGAATAAAGTAGCAGCTGCAGCTAATAAAGCAGCAAATGCAGCTAGAGTTGCAGCTGTGAAGGCTGTGCAAAATAGTATGCACCGTGATTACAATGTTCAATGA

Protein sequence

>MS.gene46390.t1

MNNASQATLHLHHLIHLHTTKPIKTNLLLQYPLPQTIFVSINLFFSRSLNNKLSSSDSHHQRVVWSIGSKDEELKSLNSGSWVQVYSNGDVYEGEFHKGKCSGSGVYHFHMSGRFEGDWIDGKYDGFGVETWARGSRYRGQYRKGLRHGIGIYRFFGGDVYTGEWCNGQCHGFGVHTCNDGSHYVGEFKWGVKHGLGRYHFRNGDIYAGEYFADMMHGFGVYQFQNGHRYEGAWHEGRRQGLGMYTFRNGETQCGHWQNGILDNPKKQDSHIGSPCAVDHAKVFKAVQDAHCAAEKAYGMSKKDELVNKVAAAANKAANAARVAAVKAVQNSMHRDYNVQ