Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59697.t1 | XP_003614538.1 | 94.5 | 687 | 35 | 3 | 1 | 686 | 1 | 685 | 0.00E+00 | 1300 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59697.t1 | Q500V5 | 30.4 | 171 | 100 | 3 | 370 | 534 | 19 | 176 | 2.6e-12 | 75.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59697.t1 | G7JZF1 | 94.5 | 687 | 35 | 3 | 1 | 686 | 1 | 685 | 0.0e+00 | 1300.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04918 | MS.gene59697 | 0.854551 | 1.14E-61 | -1.69E-46 |
MS.gene04919 | MS.gene59697 | 0.842342 | 2.74E-58 | -1.69E-46 |
MS.gene04920 | MS.gene59697 | 0.865192 | 7.06E-65 | -1.69E-46 |
MS.gene049254 | MS.gene59697 | 0.825611 | 4.27E-54 | -1.69E-46 |
MS.gene049283 | MS.gene59697 | 0.880212 | 6.61E-70 | -1.69E-46 |
MS.gene049368 | MS.gene59697 | 0.822495 | 2.30E-53 | -1.69E-46 |
MS.gene049419 | MS.gene59697 | -0.827803 | 1.28E-54 | -1.69E-46 |
MS.gene049452 | MS.gene59697 | 0.818952 | 1.50E-52 | -1.69E-46 |
MS.gene049499 | MS.gene59697 | 0.85473 | 1.01E-61 | -1.69E-46 |
MS.gene049680 | MS.gene59697 | 0.811869 | 5.64E-51 | -1.69E-46 |
MS.gene049983 | MS.gene59697 | 0.876787 | 1.06E-68 | -1.69E-46 |
MS.gene04998 | MS.gene59697 | 0.809809 | 1.57E-50 | -1.69E-46 |
MS.gene050271 | MS.gene59697 | 0.813049 | 3.12E-51 | -1.69E-46 |
MS.gene050414 | MS.gene59697 | 0.850357 | 1.79E-60 | -1.69E-46 |
MS.gene050559 | MS.gene59697 | 0.804846 | 1.78E-49 | -1.69E-46 |
MS.gene050571 | MS.gene59697 | 0.809134 | 2.20E-50 | -1.69E-46 |
MS.gene050646 | MS.gene59697 | 0.85284 | 3.54E-61 | -1.69E-46 |
MS.gene050654 | MS.gene59697 | 0.83654 | 8.81E-57 | -1.69E-46 |
MS.gene050759 | MS.gene59697 | 0.803997 | 2.67E-49 | -1.69E-46 |
MS.gene050941 | MS.gene59697 | 0.815831 | 7.56E-52 | -1.69E-46 |
MS.gene050945 | MS.gene59697 | 0.844147 | 9.05E-59 | -1.69E-46 |
MS.gene051043 | MS.gene59697 | 0.810668 | 1.03E-50 | -1.69E-46 |
MS.gene051154 | MS.gene59697 | 0.814045 | 1.88E-51 | -1.69E-46 |
MS.gene051234 | MS.gene59697 | 0.804045 | 2.61E-49 | -1.69E-46 |
MS.gene051279 | MS.gene59697 | 0.814445 | 1.54E-51 | -1.69E-46 |
MS.gene051332 | MS.gene59697 | 0.805348 | 1.39E-49 | -1.69E-46 |
MS.gene051343 | MS.gene59697 | 0.812413 | 4.29E-51 | -1.69E-46 |
MS.gene051363 | MS.gene59697 | 0.80941 | 1.92E-50 | -1.69E-46 |
MS.gene051365 | MS.gene59697 | 0.801322 | 9.51E-49 | -1.69E-46 |
MS.gene051597 | MS.gene59697 | 0.820303 | 7.37E-53 | -1.69E-46 |
MS.gene051676 | MS.gene59697 | 0.800608 | 1.33E-48 | -1.69E-46 |
MS.gene051699 | MS.gene59697 | 0.830163 | 3.43E-55 | -1.69E-46 |
MS.gene051832 | MS.gene59697 | 0.80221 | 6.25E-49 | -1.69E-46 |
MS.gene051911 | MS.gene59697 | 0.801832 | 7.48E-49 | -1.69E-46 |
MS.gene051975 | MS.gene59697 | 0.802037 | 6.78E-49 | -1.69E-46 |
MS.gene052016 | MS.gene59697 | 0.844758 | 6.20E-59 | -1.69E-46 |
MS.gene052037 | MS.gene59697 | 0.810363 | 1.20E-50 | -1.69E-46 |
MS.gene052072 | MS.gene59697 | 0.808949 | 2.41E-50 | -1.69E-46 |
MS.gene052108 | MS.gene59697 | 0.815735 | 7.94E-52 | -1.69E-46 |
MS.gene052118 | MS.gene59697 | 0.83971 | 1.35E-57 | -1.69E-46 |
MS.gene052296 | MS.gene59697 | 0.809664 | 1.69E-50 | -1.69E-46 |
MS.gene052307 | MS.gene59697 | 0.802562 | 5.29E-49 | -1.69E-46 |
MS.gene052342 | MS.gene59697 | 0.819336 | 1.23E-52 | -1.69E-46 |
MS.gene052463 | MS.gene59697 | 0.839271 | 1.75E-57 | -1.69E-46 |
MS.gene052518 | MS.gene59697 | 0.815087 | 1.11E-51 | -1.69E-46 |
MS.gene052533 | MS.gene59697 | 0.855752 | 5.11E-62 | -1.69E-46 |
MS.gene052534 | MS.gene59697 | 0.804555 | 2.04E-49 | -1.69E-46 |
MS.gene052582 | MS.gene59697 | 0.814845 | 1.25E-51 | -1.69E-46 |
MS.gene052584 | MS.gene59697 | 0.804539 | 2.06E-49 | -1.69E-46 |
MS.gene052685 | MS.gene59697 | 0.830049 | 3.65E-55 | -1.69E-46 |
MS.gene052793 | MS.gene59697 | 0.826178 | 3.13E-54 | -1.69E-46 |
MS.gene052855 | MS.gene59697 | 0.809674 | 1.68E-50 | -1.69E-46 |
MS.gene053006 | MS.gene59697 | 0.809364 | 1.96E-50 | -1.69E-46 |
MS.gene053228 | MS.gene59697 | 0.816367 | 5.73E-52 | -1.69E-46 |
MS.gene053272 | MS.gene59697 | -0.820639 | 6.17E-53 | -1.69E-46 |
MS.gene053298 | MS.gene59697 | 0.816244 | 6.11E-52 | -1.69E-46 |
MS.gene053564 | MS.gene59697 | 0.801506 | 8.72E-49 | -1.69E-46 |
MS.gene053726 | MS.gene59697 | 0.821037 | 4.99E-53 | -1.69E-46 |
MS.gene053879 | MS.gene59697 | 0.842793 | 2.08E-58 | -1.69E-46 |
MS.gene053931 | MS.gene59697 | 0.864291 | 1.35E-64 | -1.69E-46 |
MS.gene053963 | MS.gene59697 | 0.848937 | 4.46E-60 | -1.69E-46 |
MS.gene054178 | MS.gene59697 | 0.816778 | 4.64E-52 | -1.69E-46 |
MS.gene054479 | MS.gene59697 | 0.822095 | 2.84E-53 | -1.69E-46 |
MS.gene05458 | MS.gene59697 | 0.826607 | 2.47E-54 | -1.69E-46 |
MS.gene054651 | MS.gene59697 | 0.832537 | 8.93E-56 | -1.69E-46 |
MS.gene054892 | MS.gene59697 | 0.886183 | 4.27E-72 | -1.69E-46 |
MS.gene054893 | MS.gene59697 | 0.889193 | 3.02E-73 | -1.69E-46 |
MS.gene054957 | MS.gene59697 | 0.839213 | 1.81E-57 | -1.69E-46 |
MS.gene055150 | MS.gene59697 | 0.836498 | 9.03E-57 | -1.69E-46 |
MS.gene055222 | MS.gene59697 | 0.823141 | 1.62E-53 | -1.69E-46 |
MS.gene055327 | MS.gene59697 | 0.806114 | 9.63E-50 | -1.69E-46 |
MS.gene055513 | MS.gene59697 | 0.816031 | 6.82E-52 | -1.69E-46 |
MS.gene055724 | MS.gene59697 | 0.802055 | 6.73E-49 | -1.69E-46 |
MS.gene055801 | MS.gene59697 | 0.820058 | 8.38E-53 | -1.69E-46 |
MS.gene055841 | MS.gene59697 | 0.817211 | 3.71E-52 | -1.69E-46 |
MS.gene056045 | MS.gene59697 | 0.80804 | 3.77E-50 | -1.69E-46 |
MS.gene056082 | MS.gene59697 | 0.800013 | 1.76E-48 | -1.69E-46 |
MS.gene056174 | MS.gene59697 | 0.813044 | 3.12E-51 | -1.69E-46 |
MS.gene056363 | MS.gene59697 | 0.810666 | 1.03E-50 | -1.69E-46 |
MS.gene056699 | MS.gene59697 | 0.821058 | 4.94E-53 | -1.69E-46 |
MS.gene056776 | MS.gene59697 | 0.842317 | 2.78E-58 | -1.69E-46 |
MS.gene056825 | MS.gene59697 | 0.806318 | 8.72E-50 | -1.69E-46 |
MS.gene05686 | MS.gene59697 | 0.850379 | 1.76E-60 | -1.69E-46 |
MS.gene05689 | MS.gene59697 | 0.802844 | 4.63E-49 | -1.69E-46 |
MS.gene05690 | MS.gene59697 | 0.800947 | 1.13E-48 | -1.69E-46 |
MS.gene056973 | MS.gene59697 | 0.844827 | 5.94E-59 | -1.69E-46 |
MS.gene057034 | MS.gene59697 | 0.802326 | 5.92E-49 | -1.69E-46 |
MS.gene057102 | MS.gene59697 | 0.859851 | 3.11E-63 | -1.69E-46 |
MS.gene057155 | MS.gene59697 | 0.839108 | 1.93E-57 | -1.69E-46 |
MS.gene057174 | MS.gene59697 | 0.815403 | 9.41E-52 | -1.69E-46 |
MS.gene057208 | MS.gene59697 | 0.881758 | 1.84E-70 | -1.69E-46 |
MS.gene057371 | MS.gene59697 | 0.832863 | 7.42E-56 | -1.69E-46 |
MS.gene057611 | MS.gene59697 | 0.804172 | 2.45E-49 | -1.69E-46 |
MS.gene057622 | MS.gene59697 | 0.862807 | 3.90E-64 | -1.69E-46 |
MS.gene057890 | MS.gene59697 | -0.831312 | 1.79E-55 | -1.69E-46 |
MS.gene057893 | MS.gene59697 | -0.826977 | 2.02E-54 | -1.69E-46 |
MS.gene057919 | MS.gene59697 | 0.803564 | 3.28E-49 | -1.69E-46 |
MS.gene058008 | MS.gene59697 | 0.819313 | 1.24E-52 | -1.69E-46 |
MS.gene058009 | MS.gene59697 | 0.803304 | 3.72E-49 | -1.69E-46 |
MS.gene058159 | MS.gene59697 | 0.859709 | 3.43E-63 | -1.69E-46 |
MS.gene058279 | MS.gene59697 | 0.834243 | 3.35E-56 | -1.69E-46 |
MS.gene058355 | MS.gene59697 | 0.805051 | 1.61E-49 | -1.69E-46 |
MS.gene058429 | MS.gene59697 | 0.831086 | 2.04E-55 | -1.69E-46 |
MS.gene058592 | MS.gene59697 | 0.829315 | 5.52E-55 | -1.69E-46 |
MS.gene058781 | MS.gene59697 | 0.841126 | 5.74E-58 | -1.69E-46 |
MS.gene058783 | MS.gene59697 | 0.829155 | 6.03E-55 | -1.69E-46 |
MS.gene05878 | MS.gene59697 | 0.834949 | 2.23E-56 | -1.69E-46 |
MS.gene059146 | MS.gene59697 | 0.839724 | 1.34E-57 | -1.69E-46 |
MS.gene059170 | MS.gene59697 | 0.826012 | 3.43E-54 | -1.69E-46 |
MS.gene05952 | MS.gene59697 | 0.871448 | 6.78E-67 | -1.69E-46 |
MS.gene05956 | MS.gene59697 | 0.825878 | 3.69E-54 | -1.69E-46 |
MS.gene059686 | MS.gene59697 | 0.804149 | 2.48E-49 | -1.69E-46 |
MS.gene05985 | MS.gene59697 | -0.867833 | 1.02E-65 | -1.69E-46 |
MS.gene059901 | MS.gene59697 | -0.820386 | 7.05E-53 | -1.69E-46 |
MS.gene060244 | MS.gene59697 | 0.852638 | 4.05E-61 | -1.69E-46 |
MS.gene060259 | MS.gene59697 | 0.870233 | 1.70E-66 | -1.69E-46 |
MS.gene060365 | MS.gene59697 | 0.83909 | 1.95E-57 | -1.69E-46 |
MS.gene060412 | MS.gene59697 | 0.814609 | 1.41E-51 | -1.69E-46 |
MS.gene060435 | MS.gene59697 | 0.809342 | 1.98E-50 | -1.69E-46 |
MS.gene060522 | MS.gene59697 | 0.830309 | 3.16E-55 | -1.69E-46 |
MS.gene060527 | MS.gene59697 | 0.827514 | 1.50E-54 | -1.69E-46 |
MS.gene060763 | MS.gene59697 | 0.804803 | 1.81E-49 | -1.69E-46 |
MS.gene060777 | MS.gene59697 | 0.807081 | 6.02E-50 | -1.69E-46 |
MS.gene060785 | MS.gene59697 | 0.804919 | 1.71E-49 | -1.69E-46 |
MS.gene060932 | MS.gene59697 | 0.826391 | 2.78E-54 | -1.69E-46 |
MS.gene060933 | MS.gene59697 | 0.85203 | 6.03E-61 | -1.69E-46 |
MS.gene060935 | MS.gene59697 | 0.878703 | 2.27E-69 | -1.69E-46 |
MS.gene060937 | MS.gene59697 | 0.889119 | 3.22E-73 | -1.69E-46 |
MS.gene061100 | MS.gene59697 | 0.8427 | 2.20E-58 | -1.69E-46 |
MS.gene061160 | MS.gene59697 | 0.813051 | 3.11E-51 | -1.69E-46 |
MS.gene061188 | MS.gene59697 | 0.835262 | 1.86E-56 | -1.69E-46 |
MS.gene061243 | MS.gene59697 | 0.804199 | 2.42E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59697.t1 | MTR_5g055210 | 94.469 | 687 | 35 | 3 | 1 | 686 | 1 | 685 | 0.0 | 1307 |
MS.gene59697.t1 | MTR_5g055210 | 94.828 | 580 | 29 | 1 | 108 | 686 | 1 | 580 | 0.0 | 1114 |
MS.gene59697.t1 | MTR_5g055210 | 95.817 | 502 | 20 | 1 | 186 | 686 | 1 | 502 | 0.0 | 965 |
MS.gene59697.t1 | MTR_2g026390 | 32.554 | 599 | 352 | 14 | 16 | 581 | 2 | 581 | 4.95e-92 | 301 |
MS.gene59697.t1 | MTR_3g058500 | 33.097 | 565 | 315 | 13 | 24 | 551 | 8 | 546 | 1.24e-91 | 299 |
MS.gene59697.t1 | MTR_1g084210 | 30.872 | 149 | 82 | 4 | 389 | 535 | 55 | 184 | 1.91e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59697.t1 | AT1G68580 | 42.994 | 628 | 315 | 15 | 7 | 619 | 1 | 600 | 4.03e-152 | 456 |
MS.gene59697.t1 | AT1G68580 | 44.322 | 546 | 268 | 11 | 7 | 543 | 1 | 519 | 2.18e-142 | 426 |
MS.gene59697.t1 | AT1G68580 | 46.371 | 496 | 237 | 11 | 135 | 619 | 27 | 504 | 4.40e-137 | 414 |
MS.gene59697.t1 | AT1G68580 | 46.573 | 496 | 236 | 11 | 135 | 619 | 77 | 554 | 1.37e-136 | 414 |
MS.gene59697.t1 | AT1G68580 | 49.034 | 414 | 189 | 7 | 135 | 543 | 27 | 423 | 2.39e-127 | 384 |
MS.gene59697.t1 | AT5G55600 | 32.727 | 605 | 334 | 18 | 19 | 580 | 3 | 577 | 1.45e-85 | 283 |
MS.gene59697.t1 | AT5G55600 | 32.727 | 605 | 334 | 18 | 19 | 580 | 3 | 577 | 1.45e-85 | 283 |
MS.gene59697.t1 | AT5G55600 | 32.727 | 605 | 334 | 18 | 19 | 580 | 3 | 577 | 1.45e-85 | 283 |
MS.gene59697.t1 | AT4G17330 | 31.609 | 174 | 91 | 6 | 379 | 536 | 1564 | 1725 | 1.73e-15 | 81.6 |
MS.gene59697.t1 | AT4G17330 | 31.609 | 174 | 91 | 6 | 379 | 536 | 1564 | 1725 | 1.73e-15 | 81.6 |
MS.gene59697.t1 | AT4G17330 | 31.609 | 174 | 91 | 6 | 379 | 536 | 1529 | 1690 | 1.84e-15 | 81.3 |
MS.gene59697.t1 | AT1G26540 | 31.973 | 147 | 77 | 5 | 396 | 536 | 14 | 143 | 1.45e-11 | 68.2 |
MS.gene59697.t1 | AT1G09320 | 33.136 | 169 | 84 | 6 | 377 | 534 | 26 | 176 | 1.84e-11 | 67.4 |
MS.gene59697.t1 | AT1G09320 | 30.464 | 151 | 84 | 4 | 386 | 534 | 217 | 348 | 6.02e-11 | 65.9 |
MS.gene59697.t1 | AT1G11420 | 34.416 | 154 | 71 | 7 | 396 | 542 | 13 | 143 | 1.94e-11 | 67.8 |
Find 163 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATCAACTGTAGCATCTA+TGG | 0.214796 | 5.4:-43609415 | MS.gene59697:CDS |
CTTGTTACTGCTACTGGTTT+TGG | 0.249736 | 5.4:+43610239 | None:intergenic |
TTCTTCCAGGGATGCGAATA+TGG | 0.258934 | 5.4:-43611622 | MS.gene59697:CDS |
GTACACCGTTGCTTCTTCTT+TGG | 0.261762 | 5.4:+43610336 | None:intergenic |
TAACTCAAATGGAGGGTTAT+TGG | 0.262495 | 5.4:-43610479 | MS.gene59697:CDS |
GAATTGGATCTTGCTCTTAT+TGG | 0.272650 | 5.4:-43612336 | MS.gene59697:CDS |
GCCACTTCGATTCCTCTTCC+TGG | 0.294327 | 5.4:+43609263 | None:intergenic |
CTCTGATAGTGGTCGGATCT+TGG | 0.309438 | 5.4:+43609834 | None:intergenic |
ACCTGTGGTACCTGATGATC+TGG | 0.312493 | 5.4:-43609878 | MS.gene59697:CDS |
CAAACGTCTGGTTGCCTACT+TGG | 0.316619 | 5.4:-43610781 | MS.gene59697:CDS |
TACAACCATCTTGTTGCCTT+TGG | 0.316887 | 5.4:+43610740 | None:intergenic |
TTTGCTGTCCTCAGATTTGC+AGG | 0.317388 | 5.4:+43609434 | None:intergenic |
TCGAGCTTTGTTCCGGTACT+TGG | 0.319281 | 5.4:+43610569 | None:intergenic |
TCAAAAGAATTCACATGGTT+AGG | 0.322137 | 5.4:-43611378 | MS.gene59697:CDS |
TTGCTGCACACAAATGGTTC+TGG | 0.335465 | 5.4:+43610537 | None:intergenic |
GAAGAAGAAAAGTGGTGAAT+TGG | 0.337606 | 5.4:-43612352 | MS.gene59697:CDS |
CTCTTTGATTGTGGCCAACT+TGG | 0.341106 | 5.4:+43610185 | None:intergenic |
TCAAACTCTAGTGGTAGTTC+AGG | 0.347687 | 5.4:-43610417 | MS.gene59697:CDS |
CTCCAACTTGTTACTGCTAC+TGG | 0.349762 | 5.4:+43610233 | None:intergenic |
CGCGTACACAAGTTGTTCAT+TGG | 0.350880 | 5.4:-43612233 | MS.gene59697:CDS |
GGTGCAATATCACGACATTC+AGG | 0.372888 | 5.4:-43610040 | MS.gene59697:CDS |
GTTGGAGGGTTCCGTAAAAC+TGG | 0.383030 | 5.4:-43610217 | MS.gene59697:CDS |
ACTTGAGGCATTCTCGAGAT+TGG | 0.385275 | 5.4:-43609539 | MS.gene59697:CDS |
TCTCAAGACAGTGGGATTAG+AGG | 0.387259 | 5.4:-43610111 | MS.gene59697:CDS |
TATGGCTTTGAAAGATAGAT+TGG | 0.387411 | 5.4:-43612490 | MS.gene59697:CDS |
CTGAGTATTGAATGCATAGA+TGG | 0.388591 | 5.4:-43610624 | MS.gene59697:CDS |
CAAAAGAATTCACATGGTTA+GGG | 0.399435 | 5.4:-43611377 | MS.gene59697:CDS |
GAGCGTGTCGAGCTTTGTTC+CGG | 0.399625 | 5.4:+43610562 | None:intergenic |
TCCATTCTTCTTCTGCGATA+AGG | 0.402504 | 5.4:-43610359 | MS.gene59697:CDS |
TTTGTGTGCAGCAAGAAGTT+TGG | 0.403509 | 5.4:-43610528 | MS.gene59697:CDS |
GAAAAGAAGAAACCACTATC+AGG | 0.403767 | 5.4:-43611337 | MS.gene59697:CDS |
AAAACATCCTTCACAAGATC+TGG | 0.403992 | 5.4:+43609312 | None:intergenic |
GGAAAAGATGCTGTTGAGTT+AGG | 0.405133 | 5.4:-43610303 | MS.gene59697:CDS |
ATCTGATGATGGACCAGAAC+TGG | 0.408102 | 5.4:-43610391 | MS.gene59697:CDS |
AATGGAGGGTTATTGGAAAC+AGG | 0.412358 | 5.4:-43610472 | MS.gene59697:CDS |
AAATTCGTTTCGATGGATAA+AGG | 0.413265 | 5.4:-43612402 | MS.gene59697:CDS |
GAAGAACCCGAGTAAGTATC+AGG | 0.414293 | 5.4:+43609369 | None:intergenic |
TTGGTAAAGAGAAGAGTTCT+AGG | 0.425787 | 5.4:-43612317 | MS.gene59697:CDS |
TCTTCCGATATGCCTGATAG+TGG | 0.428724 | 5.4:+43611325 | None:intergenic |
AACTTCTTGCTGCACACAAA+TGG | 0.429204 | 5.4:+43610531 | None:intergenic |
TTCATTTGTCTCTTTGATTG+TGG | 0.435179 | 5.4:+43610176 | None:intergenic |
GCCTTATCGCAGAAGAAGAA+TGG | 0.435470 | 5.4:+43610358 | None:intergenic |
TTTGATTGTGGCCAACTTGG+TGG | 0.435610 | 5.4:+43610188 | None:intergenic |
AAATATCATGTTTATTTCCC+AGG | 0.439067 | 5.4:-43609709 | MS.gene59697:intron |
CATGGTTATGAACCTGAGAT+TGG | 0.439158 | 5.4:-43611588 | MS.gene59697:CDS |
TGTGGTTCCAGCTTCATTGA+AGG | 0.440047 | 5.4:-43609157 | MS.gene59697:CDS |
TTGGTTACATTGTTGATGCC+TGG | 0.452161 | 5.4:-43609783 | MS.gene59697:CDS |
ACCTGAGATTGGAGATTTGA+AGG | 0.454339 | 5.4:-43611577 | MS.gene59697:intron |
CACAGCCATATTCGCATCCC+TGG | 0.457252 | 5.4:+43611617 | None:intergenic |
ATTCCACGTTTCTCTGATAG+TGG | 0.459062 | 5.4:+43609823 | None:intergenic |
CAACGGTGTACAAAGGTTGA+TGG | 0.460522 | 5.4:-43610324 | MS.gene59697:CDS |
AGCAGAGGAGAACAAACGTC+TGG | 0.475317 | 5.4:-43610793 | MS.gene59697:CDS |
GAAACCACTATCAGGCATAT+CGG | 0.476219 | 5.4:-43611329 | MS.gene59697:CDS |
TGATCAACCTTCAATGAAGC+TGG | 0.476443 | 5.4:+43609150 | None:intergenic |
AGGCATTCTCGAGATTGGAC+AGG | 0.478147 | 5.4:-43609534 | MS.gene59697:CDS |
GCACGACTGAGGAACTGAAA+AGG | 0.478755 | 5.4:+43609097 | None:intergenic |
ACCTTCAAATCTCCAATCTC+AGG | 0.480358 | 5.4:+43611576 | None:intergenic |
ACAAGATGGTTGTAGTTCGC+TGG | 0.484731 | 5.4:-43610731 | MS.gene59697:CDS |
TTACTCGGGTTCTTCTGAAA+AGG | 0.491451 | 5.4:-43609361 | MS.gene59697:CDS |
ATACTCAGACGTTGAAGATA+AGG | 0.493320 | 5.4:+43610639 | None:intergenic |
GACAGGGAATGGATGGGTAA+AGG | 0.496000 | 5.4:-43609517 | MS.gene59697:CDS |
GCAATACAAGTCACAACATC+AGG | 0.497975 | 5.4:+43609483 | None:intergenic |
TGGTTAGATTCTATTGTTCA+AGG | 0.498161 | 5.4:-43612213 | MS.gene59697:intron |
TCTCGAGATTGGACAGGGAA+TGG | 0.498663 | 5.4:-43609528 | MS.gene59697:CDS |
GCTTCACAGTATTTAGCTGT+AGG | 0.501148 | 5.4:-43610153 | MS.gene59697:CDS |
GAGATTGGACAGGGAATGGA+TGG | 0.504271 | 5.4:-43609524 | MS.gene59697:CDS |
TGGGAGATGGAATACAATCT+AGG | 0.504917 | 5.4:-43609395 | MS.gene59697:CDS |
ACTCGGAGACCCAGATCATC+AGG | 0.505580 | 5.4:+43609868 | None:intergenic |
CTCTCTTTCACTAAAACTGT+GGG | 0.505684 | 5.4:+43610674 | None:intergenic |
CGAGAATGCCTCAAGTTACA+TGG | 0.511581 | 5.4:+43609546 | None:intergenic |
CACGACTGAGGAACTGAAAA+GGG | 0.511638 | 5.4:+43609098 | None:intergenic |
TTTCACAGAATTGATGAGGT+TGG | 0.514249 | 5.4:-43610708 | MS.gene59697:CDS |
AGCTGTAGGTTCCAATGTTG+AGG | 0.516100 | 5.4:-43610139 | MS.gene59697:CDS |
GAATGGATGGGTAAAGGTGA+GGG | 0.525927 | 5.4:-43609511 | MS.gene59697:CDS |
AGTTAAGGTGGAAGTCATCC+AGG | 0.525937 | 5.4:-43609281 | MS.gene59697:CDS |
CAGGGATGCGAATATGGCTG+TGG | 0.526261 | 5.4:-43611616 | MS.gene59697:CDS |
CACGTTTCTCTGATAGTGGT+CGG | 0.528328 | 5.4:+43609827 | None:intergenic |
GGAAGAGAAATTCGTTTCGA+TGG | 0.530586 | 5.4:-43612409 | MS.gene59697:CDS |
CACAGCACTACGCCAAGTAC+CGG | 0.531875 | 5.4:-43610581 | MS.gene59697:CDS |
CCTCTCTTTCACTAAAACTG+TGG | 0.537595 | 5.4:+43610673 | None:intergenic |
TGGCATGATGGATGGTGGGA+AGG | 0.540826 | 5.4:-43609760 | MS.gene59697:CDS |
ATGCCTGGTGGCATGATGGA+TGG | 0.541595 | 5.4:-43609768 | MS.gene59697:CDS |
CCACCATCCATCATGCCACC+AGG | 0.546255 | 5.4:+43609765 | None:intergenic |
ACTGTAGCATCTATGGGAGA+TGG | 0.548639 | 5.4:-43609408 | MS.gene59697:CDS |
CCCAGATCATCAGGTACCAC+AGG | 0.548955 | 5.4:+43609877 | None:intergenic |
CGGTACTTGGCGTAGTGCTG+TGG | 0.549279 | 5.4:+43610582 | None:intergenic |
CTGGTTTCACAGAATTGATG+AGG | 0.549883 | 5.4:-43610712 | MS.gene59697:CDS |
TAGGCAGCCTGATACTTACT+CGG | 0.552436 | 5.4:-43609376 | MS.gene59697:CDS |
CAAACTCTAGTGGTAGTTCA+GGG | 0.555530 | 5.4:-43610416 | MS.gene59697:CDS |
CTTGTTCAAAAGAATTCACA+TGG | 0.560554 | 5.4:-43611383 | MS.gene59697:CDS |
GTTTGGTAAGGATGATGTCA+AGG | 0.560830 | 5.4:-43610511 | MS.gene59697:CDS |
GGCATTCTCGAGATTGGACA+GGG | 0.564326 | 5.4:-43609533 | MS.gene59697:CDS |
CCTGGTGGCATGATGGATGG+TGG | 0.564674 | 5.4:-43609765 | MS.gene59697:CDS |
GGTGGAAGTCATCCAGGAAG+AGG | 0.569070 | 5.4:-43609275 | MS.gene59697:CDS |
AACCAGTAGCAGTAACAAGT+TGG | 0.570662 | 5.4:-43610235 | MS.gene59697:CDS |
GATGGGTAAAGGTGAGGGAA+AGG | 0.570981 | 5.4:-43609506 | MS.gene59697:CDS |
CTGGTGGCATGATGGATGGT+GGG | 0.572784 | 5.4:-43609764 | MS.gene59697:CDS |
GGAATGGATGGGTAAAGGTG+AGG | 0.573465 | 5.4:-43609512 | MS.gene59697:CDS |
GCATCAGACTGCAGAAACTT+CGG | 0.573906 | 5.4:+43609192 | None:intergenic |
TTGAGAGAGGACCTCAACAT+TGG | 0.574826 | 5.4:+43610128 | None:intergenic |
AACAGAGCAATGACATACAT+AGG | 0.575434 | 5.4:-43609224 | MS.gene59697:CDS |
AAATCAACTGTAGCATCTAT+GGG | 0.576521 | 5.4:-43609414 | MS.gene59697:CDS |
GAGGGTTCCGTAAAACTGGT+TGG | 0.578848 | 5.4:-43610213 | MS.gene59697:CDS |
GTTGATGCCTGGTGGCATGA+TGG | 0.579936 | 5.4:-43609772 | MS.gene59697:CDS |
TCACATGGTTAGGGTTACCC+TGG | 0.580451 | 5.4:-43611368 | MS.gene59697:CDS |
ACAGTGGGATTAGAGGATGT+TGG | 0.582052 | 5.4:-43610104 | MS.gene59697:CDS |
TCATGATGACTATAAATACC+AGG | 0.583831 | 5.4:-43609130 | MS.gene59697:CDS |
CAGTAGCAGTAACAAGTTGG+AGG | 0.584099 | 5.4:-43610232 | MS.gene59697:CDS |
CCTGTGGTACCTGATGATCT+GGG | 0.587162 | 5.4:-43609877 | MS.gene59697:CDS |
GAAACGTGGAATATCATTCG+TGG | 0.587500 | 5.4:-43609812 | MS.gene59697:CDS |
TTAGAGCTTCTGTTATCAAG+AGG | 0.589868 | 5.4:-43610080 | MS.gene59697:CDS |
ATATCATTCGTGGGTGATGT+TGG | 0.590093 | 5.4:-43609802 | MS.gene59697:CDS |
TTTGATATAACTCAAATGGA+GGG | 0.591359 | 5.4:-43610486 | MS.gene59697:CDS |
TCTTGGTCCTCTCATCTACT+CGG | 0.592590 | 5.4:+43609851 | None:intergenic |
TAGGGTTACCCTGGACATGT+AGG | 0.595952 | 5.4:-43611359 | MS.gene59697:CDS |
AGGTCCTCTCTCAAGACAGT+GGG | 0.596580 | 5.4:-43610119 | MS.gene59697:CDS |
AGTTCAGGGAAATCTGATGA+TGG | 0.598540 | 5.4:-43610402 | MS.gene59697:CDS |
CTCGTACATGTCTTCCAAGT+AGG | 0.600078 | 5.4:+43610767 | None:intergenic |
CACTAGAGTTTGACTCCACG+TGG | 0.600930 | 5.4:+43610427 | None:intergenic |
GACATGTACGAGGGTTCCAA+AGG | 0.601793 | 5.4:-43610756 | MS.gene59697:CDS |
ACTGGTTGGAACCACCAAGT+TGG | 0.604816 | 5.4:-43610199 | MS.gene59697:CDS |
TATTTGCACCATGTAACTTG+AGG | 0.611537 | 5.4:-43609554 | MS.gene59697:CDS |
CGTGCCGTCTTTAACCAACA+TGG | 0.612820 | 5.4:-43609079 | MS.gene59697:CDS |
AATATGGCTGTGGGAAAACA+TGG | 0.616030 | 5.4:-43611606 | MS.gene59697:CDS |
ACAAAGTTCCTGCAAATCTG+AGG | 0.617490 | 5.4:-43609442 | MS.gene59697:CDS |
TATCAGGCATATCGGAAGAA+CGG | 0.617850 | 5.4:-43611321 | MS.gene59697:CDS |
AGGCAGCCTGATACTTACTC+GGG | 0.619512 | 5.4:-43609375 | MS.gene59697:CDS |
AAACGTGGAATATCATTCGT+GGG | 0.627151 | 5.4:-43609811 | MS.gene59697:CDS |
AGGGATGCGAATATGGCTGT+GGG | 0.627562 | 5.4:-43611615 | MS.gene59697:CDS |
TGAAAAGGGAAGGATCTCCC+TGG | 0.627762 | 5.4:+43609112 | None:intergenic |
ATAACCATGTTGGTTAAAGA+CGG | 0.629339 | 5.4:+43609075 | None:intergenic |
GGGTTCCAAAGGCAACAAGA+TGG | 0.630417 | 5.4:-43610745 | MS.gene59697:CDS |
GAAGAAGCAACGGTGTACAA+AGG | 0.632099 | 5.4:-43610331 | MS.gene59697:CDS |
GTTACATTGTTGATGCCTGG+TGG | 0.632805 | 5.4:-43609780 | MS.gene59697:CDS |
GTGCAGCAAGAAGTTTGGTA+AGG | 0.632888 | 5.4:-43610523 | MS.gene59697:CDS |
ACTGAGGAACTGAAAAGGGA+AGG | 0.632917 | 5.4:+43609102 | None:intergenic |
TGGCGTAGTGCTGTGGACTG+AGG | 0.634382 | 5.4:+43610589 | None:intergenic |
GAGGTCCTCTCTCAAGACAG+TGG | 0.634450 | 5.4:-43610120 | MS.gene59697:CDS |
GGTTAAAGACGGCACGACTG+AGG | 0.637232 | 5.4:+43609086 | None:intergenic |
CACGTGGAGTCAAACTCTAG+TGG | 0.647874 | 5.4:-43610426 | MS.gene59697:CDS |
TCATCTACACATAACCATGT+TGG | 0.651118 | 5.4:+43609065 | None:intergenic |
TAATCCCACTGTCTTGAGAG+AGG | 0.651285 | 5.4:+43610115 | None:intergenic |
CTAGAGTTTGACTCCACGTG+GGG | 0.651840 | 5.4:+43610429 | None:intergenic |
TAAGGCCAAAGAAGAAGCAA+CGG | 0.653055 | 5.4:-43610341 | MS.gene59697:CDS |
CATGATGACTATAAATACCA+GGG | 0.653722 | 5.4:-43609129 | MS.gene59697:CDS |
TGGGTCTCCGAGTAGATGAG+AGG | 0.656912 | 5.4:-43609858 | MS.gene59697:CDS |
TCACGACATTCAGGATGCAG+AGG | 0.660192 | 5.4:-43610031 | MS.gene59697:CDS |
AGTAGCAGTAACAAGTTGGA+GGG | 0.665623 | 5.4:-43610231 | MS.gene59697:CDS |
GGATAAAGGTACTAGAAGAG+AGG | 0.668051 | 5.4:-43612388 | MS.gene59697:CDS |
CTACTTGGAAGACATGTACG+AGG | 0.672183 | 5.4:-43610766 | MS.gene59697:CDS |
GGATAAACTTAGAAAGACTG+AGG | 0.673810 | 5.4:-43609340 | MS.gene59697:CDS |
GGAAGTTCCAGATCTTGTGA+AGG | 0.675883 | 5.4:-43609319 | MS.gene59697:CDS |
GAGGCACAAAGACAAAGTGA+AGG | 0.676396 | 5.4:-43610061 | MS.gene59697:CDS |
GGATGAAGCTAAGAAGCTCG+AGG | 0.677654 | 5.4:-43610010 | MS.gene59697:intron |
TTATCGCAGAAGAAGAATGG+AGG | 0.692820 | 5.4:+43610361 | None:intergenic |
TCCAGGAAGAGGAATCGAAG+TGG | 0.703286 | 5.4:-43609264 | MS.gene59697:CDS |
ACTAGAGTTTGACTCCACGT+GGG | 0.704632 | 5.4:+43610428 | None:intergenic |
CGACCACTATCAGAGAAACG+TGG | 0.706299 | 5.4:-43609826 | MS.gene59697:CDS |
TACTTGGAAGACATGTACGA+GGG | 0.709651 | 5.4:-43610765 | MS.gene59697:CDS |
GTAGTGCTGTGGACTGAGGA+CGG | 0.713773 | 5.4:+43610593 | None:intergenic |
AGATTGGACAGGGAATGGAT+GGG | 0.719923 | 5.4:-43609523 | MS.gene59697:CDS |
TCTCTTTCACTAAAACTGTG+GGG | 0.748073 | 5.4:+43610675 | None:intergenic |
GAAGCAAATGTATCCCCACG+TGG | 0.785568 | 5.4:-43610442 | MS.gene59697:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAATAAAATAATTCAATA+AGG | + | chr5.4:43610117-43610136 | None:intergenic | 10.0% |
!!! | TTTATATTTTTCATTAGTAT+TGG | - | chr5.4:43611583-43611602 | MS.gene59697:CDS | 10.0% |
!!! | TTTTTTATTAATTTTCTTGA+AGG | - | chr5.4:43611634-43611653 | MS.gene59697:intron | 10.0% |
!! | GTTAAGATTAATTAAGAAAA+AGG | + | chr5.4:43609395-43609414 | None:intergenic | 15.0% |
!!! | TTGTTAATTATTGTTTTCAT+TGG | - | chr5.4:43609747-43609766 | MS.gene59697:CDS | 15.0% |
!!! | TTTTAATAATGACTTTTTTC+TGG | - | chr5.4:43609842-43609861 | MS.gene59697:CDS | 15.0% |
!! | GGTATTAAATTCAATTATTG+TGG | - | chr5.4:43609998-43610017 | MS.gene59697:intron | 20.0% |
!! | TTAACTTCAAGATTAATAAG+AGG | + | chr5.4:43611951-43611970 | None:intergenic | 20.0% |
!!! | ATGTGTAAAATATTTTACAC+TGG | + | chr5.4:43610321-43610340 | None:intergenic | 20.0% |
!!! | CTGTTTTTTTTTTCTTTCTT+TGG | - | chr5.4:43610632-43610651 | MS.gene59697:CDS | 20.0% |
!!! | GCAAATATTGTTTTTATTGT+TGG | + | chr5.4:43610436-43610455 | None:intergenic | 20.0% |
!!! | TATTAATTTTCTTGAAGGAA+TGG | - | chr5.4:43611639-43611658 | MS.gene59697:intron | 20.0% |
! | AAAAACAAACAAGAAATCAG+TGG | + | chr5.4:43609825-43609844 | None:intergenic | 25.0% |
! | AAATATCATGTTTATTTCCC+AGG | - | chr5.4:43611845-43611864 | MS.gene59697:intron | 25.0% |
! | TTATTGTTGGTCGATTATAA+CGG | + | chr5.4:43610423-43610442 | None:intergenic | 25.0% |
! | TTTGATATAACTCAAATGGA+GGG | - | chr5.4:43611068-43611087 | MS.gene59697:intron | 25.0% |
!! | ATGTGAATTCTTTTGAACAA+GGG | + | chr5.4:43610172-43610191 | None:intergenic | 25.0% |
!! | ATGTTTTATCATTGCAGTTA+AGG | - | chr5.4:43612258-43612277 | MS.gene59697:CDS | 25.0% |
!! | TTTTGATATAACTCAAATGG+AGG | - | chr5.4:43611067-43611086 | MS.gene59697:intron | 25.0% |
!!! | GGATTTTGATATAACTCAAA+TGG | - | chr5.4:43611064-43611083 | MS.gene59697:intron | 25.0% |
!!! | TATTTTCTGAAGAAGAAAAG+TGG | - | chr5.4:43609194-43609213 | MS.gene59697:CDS | 25.0% |
!!! | TGTGTTTAGTGTTTATTTTG+TGG | - | chr5.4:43609527-43609546 | MS.gene59697:CDS | 25.0% |
AAATCAACTGTAGCATCTAT+GGG | - | chr5.4:43612140-43612159 | MS.gene59697:intron | 30.0% | |
AAATTCGTTTCGATGGATAA+AGG | - | chr5.4:43609152-43609171 | MS.gene59697:CDS | 30.0% | |
ACAGAGCATACACAAAATTA+TGG | + | chr5.4:43611898-43611917 | None:intergenic | 30.0% | |
ACTAACTAACAGATTGTGAT+TGG | + | chr5.4:43610349-43610368 | None:intergenic | 30.0% | |
ATAAGAGGCCTAATATTACA+AGG | + | chr5.4:43611936-43611955 | None:intergenic | 30.0% | |
ATGAAAAAAGATACGTTACG+TGG | - | chr5.4:43609123-43609142 | MS.gene59697:CDS | 30.0% | |
CAAAAGAATTCACATGGTTA+GGG | - | chr5.4:43610177-43610196 | MS.gene59697:CDS | 30.0% | |
CAATCTGTTAGTTAGTTGTA+TGG | - | chr5.4:43610353-43610372 | MS.gene59697:CDS | 30.0% | |
CATGATGACTATAAATACCA+GGG | - | chr5.4:43612425-43612444 | MS.gene59697:CDS | 30.0% | |
CGCGATTTAAGTCTAAAAAA+AGG | + | chr5.4:43609305-43609324 | None:intergenic | 30.0% | |
CTTGTTCAAAAGAATTCACA+TGG | - | chr5.4:43610171-43610190 | MS.gene59697:CDS | 30.0% | |
GAAGAATCTGAAAATTTCAG+AGG | + | chr5.4:43609915-43609934 | None:intergenic | 30.0% | |
GTACAGAATATAAGAACAGA+AGG | + | chr5.4:43611876-43611895 | None:intergenic | 30.0% | |
GTCAGATTACAATACATTTG+AGG | + | chr5.4:43610671-43610690 | None:intergenic | 30.0% | |
TCAAAAGAATTCACATGGTT+AGG | - | chr5.4:43610176-43610195 | MS.gene59697:CDS | 30.0% | |
TCATGATGACTATAAATACC+AGG | - | chr5.4:43612424-43612443 | MS.gene59697:CDS | 30.0% | |
TGAAAAAAGATACGTTACGT+GGG | - | chr5.4:43609124-43609143 | MS.gene59697:CDS | 30.0% | |
TGGTTAGATTCTATTGTTCA+AGG | - | chr5.4:43609341-43609360 | MS.gene59697:CDS | 30.0% | |
TTAACATGAGAAGAGATTGA+AGG | + | chr5.4:43609800-43609819 | None:intergenic | 30.0% | |
TTATTGTTGCTCGATTACAA+CGG | + | chr5.4:43610573-43610592 | None:intergenic | 30.0% | |
TTCATTTGTCTCTTTGATTG+TGG | + | chr5.4:43611381-43611400 | None:intergenic | 30.0% | |
TTGAAGTTAATGTCTTTGCA+GGG | - | chr5.4:43611961-43611980 | MS.gene59697:intron | 30.0% | |
TTTGTCGTCCTTGTAATATT+AGG | - | chr5.4:43611925-43611944 | MS.gene59697:intron | 30.0% | |
! | AATTTTCAGATTCTTCTTCC+AGG | - | chr5.4:43609919-43609938 | MS.gene59697:intron | 30.0% |
! | ATAACCATGTTGGTTAAAGA+CGG | + | chr5.4:43612482-43612501 | None:intergenic | 30.0% |
! | ATTTTCAGATTCTTCTTCCA+GGG | - | chr5.4:43609920-43609939 | MS.gene59697:intron | 30.0% |
! | CATGTGAATTCTTTTGAACA+AGG | + | chr5.4:43610173-43610192 | None:intergenic | 30.0% |
! | CGTTAATTCGAGTCTTTTAT+TGG | - | chr5.4:43609480-43609499 | MS.gene59697:CDS | 30.0% |
! | TTTTATCATTGCAGTTAAGG+TGG | - | chr5.4:43612261-43612280 | MS.gene59697:CDS | 30.0% |
!!! | TTTTGTGTTTGTTTTAGCAG+AGG | - | chr5.4:43610746-43610765 | MS.gene59697:CDS | 30.0% |
AAAACATCCTTCACAAGATC+TGG | + | chr5.4:43612245-43612264 | None:intergenic | 35.0% | |
AAACGTGGAATATCATTCGT+GGG | - | chr5.4:43611743-43611762 | MS.gene59697:intron | 35.0% | |
AACAGAGCAATGACATACAT+AGG | - | chr5.4:43612330-43612349 | MS.gene59697:CDS | 35.0% | |
ATACTCAGACGTTGAAGATA+AGG | + | chr5.4:43610918-43610937 | None:intergenic | 35.0% | |
CAAATCAACTGTAGCATCTA+TGG | - | chr5.4:43612139-43612158 | MS.gene59697:intron | 35.0% | |
CTCTCTTTCACTAAAACTGT+GGG | + | chr5.4:43610883-43610902 | None:intergenic | 35.0% | |
CTTGAAGTTAATGTCTTTGC+AGG | - | chr5.4:43611960-43611979 | MS.gene59697:intron | 35.0% | |
GAAAAGAAGAAACCACTATC+AGG | - | chr5.4:43610217-43610236 | MS.gene59697:CDS | 35.0% | |
GAAGAAGAAAAGTGGTGAAT+TGG | - | chr5.4:43609202-43609221 | MS.gene59697:CDS | 35.0% | |
GAATTGGATCTTGCTCTTAT+TGG | - | chr5.4:43609218-43609237 | MS.gene59697:CDS | 35.0% | |
GGATAAACTTAGAAAGACTG+AGG | - | chr5.4:43612214-43612233 | MS.gene59697:CDS | 35.0% | |
TAACTCAAATGGAGGGTTAT+TGG | - | chr5.4:43611075-43611094 | MS.gene59697:intron | 35.0% | |
TATTTGCACCATGTAACTTG+AGG | - | chr5.4:43612000-43612019 | MS.gene59697:intron | 35.0% | |
TCATCTACACATAACCATGT+TGG | + | chr5.4:43612492-43612511 | None:intergenic | 35.0% | |
TCTCTTTCACTAAAACTGTG+GGG | + | chr5.4:43610882-43610901 | None:intergenic | 35.0% | |
TGAAGTTAATGTCTTTGCAG+GGG | - | chr5.4:43611962-43611981 | MS.gene59697:intron | 35.0% | |
TTAGAGCTTCTGTTATCAAG+AGG | - | chr5.4:43611474-43611493 | MS.gene59697:intron | 35.0% | |
TTGGTAAAGAGAAGAGTTCT+AGG | - | chr5.4:43609237-43609256 | MS.gene59697:CDS | 35.0% | |
TTTCACAGAATTGATGAGGT+TGG | - | chr5.4:43610846-43610865 | MS.gene59697:intron | 35.0% | |
!! | CTGAGTATTGAATGCATAGA+TGG | - | chr5.4:43610930-43610949 | MS.gene59697:intron | 35.0% |
!! | GCTTTCGCAAATTGATTTTC+AGG | - | chr5.4:43610716-43610735 | MS.gene59697:CDS | 35.0% |
!! | TGATGCTACTGATAGTTTTG+TGG | - | chr5.4:43612379-43612398 | MS.gene59697:CDS | 35.0% |
AACCAGTAGCAGTAACAAGT+TGG | - | chr5.4:43611319-43611338 | MS.gene59697:CDS | 40.0% | |
AACTTCTTGCTGCACACAAA+TGG | + | chr5.4:43611026-43611045 | None:intergenic | 40.0% | |
AAGAACAGAAGGTCATACCT+GGG | + | chr5.4:43611865-43611884 | None:intergenic | 40.0% | |
AATATGGCTGTGGGAAAACA+TGG | - | chr5.4:43609948-43609967 | MS.gene59697:intron | 40.0% | |
AATCAATTTGCGAAAGCAGC+AGG | + | chr5.4:43610713-43610732 | None:intergenic | 40.0% | |
AATGGAGGGTTATTGGAAAC+AGG | - | chr5.4:43611082-43611101 | MS.gene59697:intron | 40.0% | |
ACAAAGTTCCTGCAAATCTG+AGG | - | chr5.4:43612112-43612131 | MS.gene59697:intron | 40.0% | |
ACCTGAGATTGGAGATTTGA+AGG | - | chr5.4:43609977-43609996 | MS.gene59697:intron | 40.0% | |
ACCTTCAAATCTCCAATCTC+AGG | + | chr5.4:43609981-43610000 | None:intergenic | 40.0% | |
AGTTCAGGGAAATCTGATGA+TGG | - | chr5.4:43611152-43611171 | MS.gene59697:intron | 40.0% | |
ATATCATTCGTGGGTGATGT+TGG | - | chr5.4:43611752-43611771 | MS.gene59697:intron | 40.0% | |
ATTCCACGTTTCTCTGATAG+TGG | + | chr5.4:43611734-43611753 | None:intergenic | 40.0% | |
CAAACTCTAGTGGTAGTTCA+GGG | - | chr5.4:43611138-43611157 | MS.gene59697:intron | 40.0% | |
CATGGTTATGAACCTGAGAT+TGG | - | chr5.4:43609966-43609985 | MS.gene59697:intron | 40.0% | |
CCTCTCTTTCACTAAAACTG+TGG | + | chr5.4:43610884-43610903 | None:intergenic | 40.0% | |
CTGGTTTCACAGAATTGATG+AGG | - | chr5.4:43610842-43610861 | MS.gene59697:intron | 40.0% | |
GAAACCACTATCAGGCATAT+CGG | - | chr5.4:43610225-43610244 | MS.gene59697:CDS | 40.0% | |
GAAACGTGGAATATCATTCG+TGG | - | chr5.4:43611742-43611761 | MS.gene59697:intron | 40.0% | |
GCAATACAAGTCACAACATC+AGG | + | chr5.4:43612074-43612093 | None:intergenic | 40.0% | |
GCTTCACAGTATTTAGCTGT+AGG | - | chr5.4:43611401-43611420 | MS.gene59697:CDS | 40.0% | |
GGAAAAGATGCTGTTGAGTT+AGG | - | chr5.4:43611251-43611270 | MS.gene59697:intron | 40.0% | |
GGAAGAGAAATTCGTTTCGA+TGG | - | chr5.4:43609145-43609164 | MS.gene59697:CDS | 40.0% | |
GTTTGGTAAGGATGATGTCA+AGG | - | chr5.4:43611043-43611062 | MS.gene59697:intron | 40.0% | |
TAAGAACAGAAGGTCATACC+TGG | + | chr5.4:43611866-43611885 | None:intergenic | 40.0% | |
TAAGGCCAAAGAAGAAGCAA+CGG | - | chr5.4:43611213-43611232 | MS.gene59697:intron | 40.0% | |
TACAACCATCTTGTTGCCTT+TGG | + | chr5.4:43610817-43610836 | None:intergenic | 40.0% | |
TACTTGGAAGACATGTACGA+GGG | - | chr5.4:43610789-43610808 | MS.gene59697:CDS | 40.0% | |
TATCAGGCATATCGGAAGAA+CGG | - | chr5.4:43610233-43610252 | MS.gene59697:CDS | 40.0% | |
TCAAACTCTAGTGGTAGTTC+AGG | - | chr5.4:43611137-43611156 | MS.gene59697:intron | 40.0% | |
TCCATTCTTCTTCTGCGATA+AGG | - | chr5.4:43611195-43611214 | MS.gene59697:intron | 40.0% | |
TGATCAACCTTCAATGAAGC+TGG | + | chr5.4:43612407-43612426 | None:intergenic | 40.0% | |
TGGGAGATGGAATACAATCT+AGG | - | chr5.4:43612159-43612178 | MS.gene59697:intron | 40.0% | |
TTATCGCAGAAGAAGAATGG+AGG | + | chr5.4:43611196-43611215 | None:intergenic | 40.0% | |
TTGGTTACATTGTTGATGCC+TGG | - | chr5.4:43611771-43611790 | MS.gene59697:intron | 40.0% | |
TTTCTAGATCTCTTGCGTGT+GGG | - | chr5.4:43609604-43609623 | MS.gene59697:intron | 40.0% | |
TTTGTGTGCAGCAAGAAGTT+TGG | - | chr5.4:43611026-43611045 | MS.gene59697:intron | 40.0% | |
! | AGTAGCAGTAACAAGTTGGA+GGG | - | chr5.4:43611323-43611342 | MS.gene59697:CDS | 40.0% |
! | CTTCTTTTCCTACATGTCCA+GGG | + | chr5.4:43610206-43610225 | None:intergenic | 40.0% |
! | TCTTCTTTTCCTACATGTCC+AGG | + | chr5.4:43610207-43610226 | None:intergenic | 40.0% |
! | TTACTCGGGTTCTTCTGAAA+AGG | - | chr5.4:43612193-43612212 | MS.gene59697:intron | 40.0% |
! | TTTTCTAGATCTCTTGCGTG+TGG | - | chr5.4:43609603-43609622 | MS.gene59697:intron | 40.0% |
!! | CCACAGTTTTAGTGAAAGAG+AGG | - | chr5.4:43610881-43610900 | MS.gene59697:intron | 40.0% |
!! | GGATAAAGGTACTAGAAGAG+AGG | - | chr5.4:43609166-43609185 | MS.gene59697:CDS | 40.0% |
!!! | CTTGTTACTGCTACTGGTTT+TGG | + | chr5.4:43611318-43611337 | None:intergenic | 40.0% |
!!! | GATTTTAGCTTCTAGACCTG+TGG | - | chr5.4:43611661-43611680 | MS.gene59697:intron | 40.0% |
ACAAGATGGTTGTAGTTCGC+TGG | - | chr5.4:43610823-43610842 | MS.gene59697:intron | 45.0% | |
ACAGTGGGATTAGAGGATGT+TGG | - | chr5.4:43611450-43611469 | MS.gene59697:intron | 45.0% | |
ACTAGAGTTTGACTCCACGT+GGG | + | chr5.4:43611129-43611148 | None:intergenic | 45.0% | |
ACTGAGGAACTGAAAAGGGA+AGG | + | chr5.4:43612455-43612474 | None:intergenic | 45.0% | |
ACTGTAGCATCTATGGGAGA+TGG | - | chr5.4:43612146-43612165 | MS.gene59697:intron | 45.0% | |
AGATTGGACAGGGAATGGAT+GGG | - | chr5.4:43612031-43612050 | MS.gene59697:intron | 45.0% | |
AGCTGTAGGTTCCAATGTTG+AGG | - | chr5.4:43611415-43611434 | MS.gene59697:intron | 45.0% | |
AGTTAAGGTGGAAGTCATCC+AGG | - | chr5.4:43612273-43612292 | MS.gene59697:CDS | 45.0% | |
CAACGGTGTACAAAGGTTGA+TGG | - | chr5.4:43611230-43611249 | MS.gene59697:intron | 45.0% | |
CACGACTGAGGAACTGAAAA+GGG | + | chr5.4:43612459-43612478 | None:intergenic | 45.0% | |
CGAGAATGCCTCAAGTTACA+TGG | + | chr5.4:43612011-43612030 | None:intergenic | 45.0% | |
CGCGTACACAAGTTGTTCAT+TGG | - | chr5.4:43609321-43609340 | MS.gene59697:CDS | 45.0% | |
CTACTTGGAAGACATGTACG+AGG | - | chr5.4:43610788-43610807 | MS.gene59697:CDS | 45.0% | |
CTCGTACATGTCTTCCAAGT+AGG | + | chr5.4:43610790-43610809 | None:intergenic | 45.0% | |
CTCTTTGATTGTGGCCAACT+TGG | + | chr5.4:43611372-43611391 | None:intergenic | 45.0% | |
GAAGAACCCGAGTAAGTATC+AGG | + | chr5.4:43612188-43612207 | None:intergenic | 45.0% | |
GAAGAAGCAACGGTGTACAA+AGG | - | chr5.4:43611223-43611242 | MS.gene59697:intron | 45.0% | |
GAATGGATGGGTAAAGGTGA+GGG | - | chr5.4:43612043-43612062 | MS.gene59697:intron | 45.0% | |
GAGGCACAAAGACAAAGTGA+AGG | - | chr5.4:43611493-43611512 | MS.gene59697:intron | 45.0% | |
GCATCAGACTGCAGAAACTT+CGG | + | chr5.4:43612365-43612384 | None:intergenic | 45.0% | |
GCCTTATCGCAGAAGAAGAA+TGG | + | chr5.4:43611199-43611218 | None:intergenic | 45.0% | |
GGAAGTTCCAGATCTTGTGA+AGG | - | chr5.4:43612235-43612254 | MS.gene59697:CDS | 45.0% | |
GGTGCAATATCACGACATTC+AGG | - | chr5.4:43611514-43611533 | MS.gene59697:intron | 45.0% | |
GTACACCGTTGCTTCTTCTT+TGG | + | chr5.4:43611221-43611240 | None:intergenic | 45.0% | |
GTGCAGCAAGAAGTTTGGTA+AGG | - | chr5.4:43611031-43611050 | MS.gene59697:intron | 45.0% | |
GTTACATTGTTGATGCCTGG+TGG | - | chr5.4:43611774-43611793 | MS.gene59697:intron | 45.0% | |
TAATCCCACTGTCTTGAGAG+AGG | + | chr5.4:43611442-43611461 | None:intergenic | 45.0% | |
TAGGCAGCCTGATACTTACT+CGG | - | chr5.4:43612178-43612197 | MS.gene59697:intron | 45.0% | |
TCTCAAGACAGTGGGATTAG+AGG | - | chr5.4:43611443-43611462 | MS.gene59697:intron | 45.0% | |
TCTTCCGATATGCCTGATAG+TGG | + | chr5.4:43610232-43610251 | None:intergenic | 45.0% | |
TCTTGGTCCTCTCATCTACT+CGG | + | chr5.4:43611706-43611725 | None:intergenic | 45.0% | |
TGTGGTTCCAGCTTCATTGA+AGG | - | chr5.4:43612397-43612416 | MS.gene59697:CDS | 45.0% | |
TTCTAGATCTCTTGCGTGTG+GGG | - | chr5.4:43609605-43609624 | MS.gene59697:intron | 45.0% | |
TTCTTCCAGGGATGCGAATA+TGG | - | chr5.4:43609932-43609951 | MS.gene59697:intron | 45.0% | |
TTGAGAGAGGACCTCAACAT+TGG | + | chr5.4:43611429-43611448 | None:intergenic | 45.0% | |
TTGCTGCACACAAATGGTTC+TGG | + | chr5.4:43611020-43611039 | None:intergenic | 45.0% | |
TTTGATTGTGGCCAACTTGG+TGG | + | chr5.4:43611369-43611388 | None:intergenic | 45.0% | |
! | ACTTGAGGCATTCTCGAGAT+TGG | - | chr5.4:43612015-43612034 | MS.gene59697:intron | 45.0% |
! | CACTGGCAAAGCATCAGAAT+TGG | + | chr5.4:43610304-43610323 | None:intergenic | 45.0% |
! | CAGTAGCAGTAACAAGTTGG+AGG | - | chr5.4:43611322-43611341 | MS.gene59697:CDS | 45.0% |
! | GGTGGTTCCAACCAGTTTTA+CGG | + | chr5.4:43611351-43611370 | None:intergenic | 45.0% |
! | TGGAGGTTTTCTTCCAGTTC+TGG | + | chr5.4:43611179-43611198 | None:intergenic | 45.0% |
! | TTTGCTGTCCTCAGATTTGC+AGG | + | chr5.4:43612123-43612142 | None:intergenic | 45.0% |
!! | ATCTGATGATGGACCAGAAC+TGG | - | chr5.4:43611163-43611182 | MS.gene59697:intron | 45.0% |
!! | CACGTTTCTCTGATAGTGGT+CGG | + | chr5.4:43611730-43611749 | None:intergenic | 45.0% |
!! | CTCCAACTTGTTACTGCTAC+TGG | + | chr5.4:43611324-43611343 | None:intergenic | 45.0% |
!!! | TATTTTATTTTGTTTTTTTA+GGG | - | chr5.4:43610125-43610144 | MS.gene59697:CDS | 5.0% |
!!! | TTAAAAAAGAAATTTTTATA+TGG | + | chr5.4:43609726-43609745 | None:intergenic | 5.0% |
!!! | TTATTTTATTTTGTTTTTTT+AGG | - | chr5.4:43610124-43610143 | MS.gene59697:CDS | 5.0% |
ACCTGTGGTACCTGATGATC+TGG | - | chr5.4:43611676-43611695 | MS.gene59697:intron | 50.0% | |
ACTGGTTGGAACCACCAAGT+TGG | - | chr5.4:43611355-43611374 | MS.gene59697:CDS | 50.0% | |
AGCAGAGGAGAACAAACGTC+TGG | - | chr5.4:43610761-43610780 | MS.gene59697:CDS | 50.0% | |
AGGCAGCCTGATACTTACTC+GGG | - | chr5.4:43612179-43612198 | MS.gene59697:intron | 50.0% | |
AGGCATTCTCGAGATTGGAC+AGG | - | chr5.4:43612020-43612039 | MS.gene59697:intron | 50.0% | |
AGGGATGCGAATATGGCTGT+GGG | - | chr5.4:43609939-43609958 | MS.gene59697:intron | 50.0% | |
AGGTCCTCTCTCAAGACAGT+GGG | - | chr5.4:43611435-43611454 | MS.gene59697:intron | 50.0% | |
CAAACGTCTGGTTGCCTACT+TGG | - | chr5.4:43610773-43610792 | MS.gene59697:CDS | 50.0% | |
CACGTGGAGTCAAACTCTAG+TGG | - | chr5.4:43611128-43611147 | MS.gene59697:intron | 50.0% | |
CACTAGAGTTTGACTCCACG+TGG | + | chr5.4:43611130-43611149 | None:intergenic | 50.0% | |
CCTGTGGTACCTGATGATCT+GGG | - | chr5.4:43611677-43611696 | MS.gene59697:intron | 50.0% | |
CGACCACTATCAGAGAAACG+TGG | - | chr5.4:43611728-43611747 | MS.gene59697:intron | 50.0% | |
CGTGCCGTCTTTAACCAACA+TGG | - | chr5.4:43612475-43612494 | MS.gene59697:CDS | 50.0% | |
CTAGAGTTTGACTCCACGTG+GGG | + | chr5.4:43611128-43611147 | None:intergenic | 50.0% | |
GAAGCAAATGTATCCCCACG+TGG | - | chr5.4:43611112-43611131 | MS.gene59697:intron | 50.0% | |
GACAGGGAATGGATGGGTAA+AGG | - | chr5.4:43612037-43612056 | MS.gene59697:intron | 50.0% | |
GACATGTACGAGGGTTCCAA+AGG | - | chr5.4:43610798-43610817 | MS.gene59697:CDS | 50.0% | |
GAGATTGGACAGGGAATGGA+TGG | - | chr5.4:43612030-43612049 | MS.gene59697:intron | 50.0% | |
GAGGGTTCCGTAAAACTGGT+TGG | - | chr5.4:43611341-43611360 | MS.gene59697:CDS | 50.0% | |
GATGGGTAAAGGTGAGGGAA+AGG | - | chr5.4:43612048-43612067 | MS.gene59697:intron | 50.0% | |
GCACGACTGAGGAACTGAAA+AGG | + | chr5.4:43612460-43612479 | None:intergenic | 50.0% | |
GGAATGGATGGGTAAAGGTG+AGG | - | chr5.4:43612042-43612061 | MS.gene59697:intron | 50.0% | |
GGATGAAGCTAAGAAGCTCG+AGG | - | chr5.4:43611544-43611563 | MS.gene59697:intron | 50.0% | |
GGCATTCTCGAGATTGGACA+GGG | - | chr5.4:43612021-43612040 | MS.gene59697:intron | 50.0% | |
GGGTTCCAAAGGCAACAAGA+TGG | - | chr5.4:43610809-43610828 | MS.gene59697:CDS | 50.0% | |
GTTGGAGGGTTCCGTAAAAC+TGG | - | chr5.4:43611337-43611356 | MS.gene59697:CDS | 50.0% | |
TAGGGTTACCCTGGACATGT+AGG | - | chr5.4:43610195-43610214 | MS.gene59697:CDS | 50.0% | |
TCACATGGTTAGGGTTACCC+TGG | - | chr5.4:43610186-43610205 | MS.gene59697:CDS | 50.0% | |
TCACGACATTCAGGATGCAG+AGG | - | chr5.4:43611523-43611542 | MS.gene59697:intron | 50.0% | |
TCCAGGAAGAGGAATCGAAG+TGG | - | chr5.4:43612290-43612309 | MS.gene59697:CDS | 50.0% | |
TCTCGAGATTGGACAGGGAA+TGG | - | chr5.4:43612026-43612045 | MS.gene59697:intron | 50.0% | |
TGAAAAGGGAAGGATCTCCC+TGG | + | chr5.4:43612445-43612464 | None:intergenic | 50.0% | |
! | TCTCTTGCGTGTGGGGTTTT+TGG | - | chr5.4:43609612-43609631 | MS.gene59697:intron | 50.0% |
!! | CTCTGATAGTGGTCGGATCT+TGG | + | chr5.4:43611723-43611742 | None:intergenic | 50.0% |
!! | TCGAGCTTTGTTCCGGTACT+TGG | + | chr5.4:43610988-43611007 | None:intergenic | 50.0% |
!!! | GGGGTTTTTGGTTGTGTCAC+TGG | - | chr5.4:43609624-43609643 | MS.gene59697:intron | 50.0% |
ACTCGGAGACCCAGATCATC+AGG | + | chr5.4:43611689-43611708 | None:intergenic | 55.0% | |
CACAGCACTACGCCAAGTAC+CGG | - | chr5.4:43610973-43610992 | MS.gene59697:intron | 55.0% | |
CACAGCCATATTCGCATCCC+TGG | + | chr5.4:43609940-43609959 | None:intergenic | 55.0% | |
CAGGGATGCGAATATGGCTG+TGG | - | chr5.4:43609938-43609957 | MS.gene59697:intron | 55.0% | |
CCCAGATCATCAGGTACCAC+AGG | + | chr5.4:43611680-43611699 | None:intergenic | 55.0% | |
GAGGTCCTCTCTCAAGACAG+TGG | - | chr5.4:43611434-43611453 | MS.gene59697:intron | 55.0% | |
GCCACTTCGATTCCTCTTCC+TGG | + | chr5.4:43612294-43612313 | None:intergenic | 55.0% | |
GGTGGAAGTCATCCAGGAAG+AGG | - | chr5.4:43612279-43612298 | MS.gene59697:CDS | 55.0% | |
GGTTAAAGACGGCACGACTG+AGG | + | chr5.4:43612471-43612490 | None:intergenic | 55.0% | |
GTTGATGCCTGGTGGCATGA+TGG | - | chr5.4:43611782-43611801 | MS.gene59697:intron | 55.0% | |
TGGGTCTCCGAGTAGATGAG+AGG | - | chr5.4:43611696-43611715 | MS.gene59697:intron | 55.0% | |
! | ATGCCTGGTGGCATGATGGA+TGG | - | chr5.4:43611786-43611805 | MS.gene59697:intron | 55.0% |
! | GTAGTGCTGTGGACTGAGGA+CGG | + | chr5.4:43610964-43610983 | None:intergenic | 55.0% |
!! | CTGGTGGCATGATGGATGGT+GGG | - | chr5.4:43611790-43611809 | MS.gene59697:intron | 55.0% |
!! | GAGCGTGTCGAGCTTTGTTC+CGG | + | chr5.4:43610995-43611014 | None:intergenic | 55.0% |
!! | TGGCATGATGGATGGTGGGA+AGG | - | chr5.4:43611794-43611813 | MS.gene59697:intron | 55.0% |
CCACCATCCATCATGCCACC+AGG | + | chr5.4:43611792-43611811 | None:intergenic | 60.0% | |
CGGTACTTGGCGTAGTGCTG+TGG | + | chr5.4:43610975-43610994 | None:intergenic | 60.0% | |
! | TGGCGTAGTGCTGTGGACTG+AGG | + | chr5.4:43610968-43610987 | None:intergenic | 60.0% |
!! | CCTGGTGGCATGATGGATGG+TGG | - | chr5.4:43611789-43611808 | MS.gene59697:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 43609065 | 43612511 | 43609065 | ID=MS.gene59697 |
chr5.4 | mRNA | 43609065 | 43612511 | 43609065 | ID=MS.gene59697.t1;Parent=MS.gene59697 |
chr5.4 | exon | 43612214 | 43612511 | 43612214 | ID=MS.gene59697.t1.exon1;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43612214 | 43612511 | 43612214 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
chr5.4 | exon | 43611578 | 43611648 | 43611578 | ID=MS.gene59697.t1.exon2;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43611578 | 43611648 | 43611578 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
chr5.4 | exon | 43611308 | 43611430 | 43611308 | ID=MS.gene59697.t1.exon3;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43611308 | 43611430 | 43611308 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
chr5.4 | exon | 43610011 | 43610838 | 43610011 | ID=MS.gene59697.t1.exon4;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43610011 | 43610838 | 43610011 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
chr5.4 | exon | 43609710 | 43609920 | 43609710 | ID=MS.gene59697.t1.exon5;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43609710 | 43609920 | 43609710 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
chr5.4 | exon | 43609065 | 43609594 | 43609065 | ID=MS.gene59697.t1.exon6;Parent=MS.gene59697.t1 |
chr5.4 | CDS | 43609065 | 43609594 | 43609065 | ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1 |
Gene Sequence |
Protein sequence |