AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59697


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59697.t1 MTR_5g055210 94.469 687 35 3 1 686 1 685 0.0 1307
MS.gene59697.t1 MTR_5g055210 94.828 580 29 1 108 686 1 580 0.0 1114
MS.gene59697.t1 MTR_5g055210 95.817 502 20 1 186 686 1 502 0.0 965
MS.gene59697.t1 MTR_2g026390 32.554 599 352 14 16 581 2 581 4.95e-92 301
MS.gene59697.t1 MTR_3g058500 33.097 565 315 13 24 551 8 546 1.24e-91 299
MS.gene59697.t1 MTR_1g084210 30.872 149 82 4 389 535 55 184 1.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59697.t1 AT1G68580 42.994 628 315 15 7 619 1 600 4.03e-152 456
MS.gene59697.t1 AT1G68580 44.322 546 268 11 7 543 1 519 2.18e-142 426
MS.gene59697.t1 AT1G68580 46.371 496 237 11 135 619 27 504 4.40e-137 414
MS.gene59697.t1 AT1G68580 46.573 496 236 11 135 619 77 554 1.37e-136 414
MS.gene59697.t1 AT1G68580 49.034 414 189 7 135 543 27 423 2.39e-127 384
MS.gene59697.t1 AT5G55600 32.727 605 334 18 19 580 3 577 1.45e-85 283
MS.gene59697.t1 AT5G55600 32.727 605 334 18 19 580 3 577 1.45e-85 283
MS.gene59697.t1 AT5G55600 32.727 605 334 18 19 580 3 577 1.45e-85 283
MS.gene59697.t1 AT4G17330 31.609 174 91 6 379 536 1564 1725 1.73e-15 81.6
MS.gene59697.t1 AT4G17330 31.609 174 91 6 379 536 1564 1725 1.73e-15 81.6
MS.gene59697.t1 AT4G17330 31.609 174 91 6 379 536 1529 1690 1.84e-15 81.3
MS.gene59697.t1 AT1G26540 31.973 147 77 5 396 536 14 143 1.45e-11 68.2
MS.gene59697.t1 AT1G09320 33.136 169 84 6 377 534 26 176 1.84e-11 67.4
MS.gene59697.t1 AT1G09320 30.464 151 84 4 386 534 217 348 6.02e-11 65.9
MS.gene59697.t1 AT1G11420 34.416 154 71 7 396 542 13 143 1.94e-11 67.8

Find 163 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATCAACTGTAGCATCTA+TGG 0.214796 5.4:-43609415 MS.gene59697:CDS
CTTGTTACTGCTACTGGTTT+TGG 0.249736 5.4:+43610239 None:intergenic
TTCTTCCAGGGATGCGAATA+TGG 0.258934 5.4:-43611622 MS.gene59697:CDS
GTACACCGTTGCTTCTTCTT+TGG 0.261762 5.4:+43610336 None:intergenic
TAACTCAAATGGAGGGTTAT+TGG 0.262495 5.4:-43610479 MS.gene59697:CDS
GAATTGGATCTTGCTCTTAT+TGG 0.272650 5.4:-43612336 MS.gene59697:CDS
GCCACTTCGATTCCTCTTCC+TGG 0.294327 5.4:+43609263 None:intergenic
CTCTGATAGTGGTCGGATCT+TGG 0.309438 5.4:+43609834 None:intergenic
ACCTGTGGTACCTGATGATC+TGG 0.312493 5.4:-43609878 MS.gene59697:CDS
CAAACGTCTGGTTGCCTACT+TGG 0.316619 5.4:-43610781 MS.gene59697:CDS
TACAACCATCTTGTTGCCTT+TGG 0.316887 5.4:+43610740 None:intergenic
TTTGCTGTCCTCAGATTTGC+AGG 0.317388 5.4:+43609434 None:intergenic
TCGAGCTTTGTTCCGGTACT+TGG 0.319281 5.4:+43610569 None:intergenic
TCAAAAGAATTCACATGGTT+AGG 0.322137 5.4:-43611378 MS.gene59697:CDS
TTGCTGCACACAAATGGTTC+TGG 0.335465 5.4:+43610537 None:intergenic
GAAGAAGAAAAGTGGTGAAT+TGG 0.337606 5.4:-43612352 MS.gene59697:CDS
CTCTTTGATTGTGGCCAACT+TGG 0.341106 5.4:+43610185 None:intergenic
TCAAACTCTAGTGGTAGTTC+AGG 0.347687 5.4:-43610417 MS.gene59697:CDS
CTCCAACTTGTTACTGCTAC+TGG 0.349762 5.4:+43610233 None:intergenic
CGCGTACACAAGTTGTTCAT+TGG 0.350880 5.4:-43612233 MS.gene59697:CDS
GGTGCAATATCACGACATTC+AGG 0.372888 5.4:-43610040 MS.gene59697:CDS
GTTGGAGGGTTCCGTAAAAC+TGG 0.383030 5.4:-43610217 MS.gene59697:CDS
ACTTGAGGCATTCTCGAGAT+TGG 0.385275 5.4:-43609539 MS.gene59697:CDS
TCTCAAGACAGTGGGATTAG+AGG 0.387259 5.4:-43610111 MS.gene59697:CDS
TATGGCTTTGAAAGATAGAT+TGG 0.387411 5.4:-43612490 MS.gene59697:CDS
CTGAGTATTGAATGCATAGA+TGG 0.388591 5.4:-43610624 MS.gene59697:CDS
CAAAAGAATTCACATGGTTA+GGG 0.399435 5.4:-43611377 MS.gene59697:CDS
GAGCGTGTCGAGCTTTGTTC+CGG 0.399625 5.4:+43610562 None:intergenic
TCCATTCTTCTTCTGCGATA+AGG 0.402504 5.4:-43610359 MS.gene59697:CDS
TTTGTGTGCAGCAAGAAGTT+TGG 0.403509 5.4:-43610528 MS.gene59697:CDS
GAAAAGAAGAAACCACTATC+AGG 0.403767 5.4:-43611337 MS.gene59697:CDS
AAAACATCCTTCACAAGATC+TGG 0.403992 5.4:+43609312 None:intergenic
GGAAAAGATGCTGTTGAGTT+AGG 0.405133 5.4:-43610303 MS.gene59697:CDS
ATCTGATGATGGACCAGAAC+TGG 0.408102 5.4:-43610391 MS.gene59697:CDS
AATGGAGGGTTATTGGAAAC+AGG 0.412358 5.4:-43610472 MS.gene59697:CDS
AAATTCGTTTCGATGGATAA+AGG 0.413265 5.4:-43612402 MS.gene59697:CDS
GAAGAACCCGAGTAAGTATC+AGG 0.414293 5.4:+43609369 None:intergenic
TTGGTAAAGAGAAGAGTTCT+AGG 0.425787 5.4:-43612317 MS.gene59697:CDS
TCTTCCGATATGCCTGATAG+TGG 0.428724 5.4:+43611325 None:intergenic
AACTTCTTGCTGCACACAAA+TGG 0.429204 5.4:+43610531 None:intergenic
TTCATTTGTCTCTTTGATTG+TGG 0.435179 5.4:+43610176 None:intergenic
GCCTTATCGCAGAAGAAGAA+TGG 0.435470 5.4:+43610358 None:intergenic
TTTGATTGTGGCCAACTTGG+TGG 0.435610 5.4:+43610188 None:intergenic
AAATATCATGTTTATTTCCC+AGG 0.439067 5.4:-43609709 MS.gene59697:intron
CATGGTTATGAACCTGAGAT+TGG 0.439158 5.4:-43611588 MS.gene59697:CDS
TGTGGTTCCAGCTTCATTGA+AGG 0.440047 5.4:-43609157 MS.gene59697:CDS
TTGGTTACATTGTTGATGCC+TGG 0.452161 5.4:-43609783 MS.gene59697:CDS
ACCTGAGATTGGAGATTTGA+AGG 0.454339 5.4:-43611577 MS.gene59697:intron
CACAGCCATATTCGCATCCC+TGG 0.457252 5.4:+43611617 None:intergenic
ATTCCACGTTTCTCTGATAG+TGG 0.459062 5.4:+43609823 None:intergenic
CAACGGTGTACAAAGGTTGA+TGG 0.460522 5.4:-43610324 MS.gene59697:CDS
AGCAGAGGAGAACAAACGTC+TGG 0.475317 5.4:-43610793 MS.gene59697:CDS
GAAACCACTATCAGGCATAT+CGG 0.476219 5.4:-43611329 MS.gene59697:CDS
TGATCAACCTTCAATGAAGC+TGG 0.476443 5.4:+43609150 None:intergenic
AGGCATTCTCGAGATTGGAC+AGG 0.478147 5.4:-43609534 MS.gene59697:CDS
GCACGACTGAGGAACTGAAA+AGG 0.478755 5.4:+43609097 None:intergenic
ACCTTCAAATCTCCAATCTC+AGG 0.480358 5.4:+43611576 None:intergenic
ACAAGATGGTTGTAGTTCGC+TGG 0.484731 5.4:-43610731 MS.gene59697:CDS
TTACTCGGGTTCTTCTGAAA+AGG 0.491451 5.4:-43609361 MS.gene59697:CDS
ATACTCAGACGTTGAAGATA+AGG 0.493320 5.4:+43610639 None:intergenic
GACAGGGAATGGATGGGTAA+AGG 0.496000 5.4:-43609517 MS.gene59697:CDS
GCAATACAAGTCACAACATC+AGG 0.497975 5.4:+43609483 None:intergenic
TGGTTAGATTCTATTGTTCA+AGG 0.498161 5.4:-43612213 MS.gene59697:intron
TCTCGAGATTGGACAGGGAA+TGG 0.498663 5.4:-43609528 MS.gene59697:CDS
GCTTCACAGTATTTAGCTGT+AGG 0.501148 5.4:-43610153 MS.gene59697:CDS
GAGATTGGACAGGGAATGGA+TGG 0.504271 5.4:-43609524 MS.gene59697:CDS
TGGGAGATGGAATACAATCT+AGG 0.504917 5.4:-43609395 MS.gene59697:CDS
ACTCGGAGACCCAGATCATC+AGG 0.505580 5.4:+43609868 None:intergenic
CTCTCTTTCACTAAAACTGT+GGG 0.505684 5.4:+43610674 None:intergenic
CGAGAATGCCTCAAGTTACA+TGG 0.511581 5.4:+43609546 None:intergenic
CACGACTGAGGAACTGAAAA+GGG 0.511638 5.4:+43609098 None:intergenic
TTTCACAGAATTGATGAGGT+TGG 0.514249 5.4:-43610708 MS.gene59697:CDS
AGCTGTAGGTTCCAATGTTG+AGG 0.516100 5.4:-43610139 MS.gene59697:CDS
GAATGGATGGGTAAAGGTGA+GGG 0.525927 5.4:-43609511 MS.gene59697:CDS
AGTTAAGGTGGAAGTCATCC+AGG 0.525937 5.4:-43609281 MS.gene59697:CDS
CAGGGATGCGAATATGGCTG+TGG 0.526261 5.4:-43611616 MS.gene59697:CDS
CACGTTTCTCTGATAGTGGT+CGG 0.528328 5.4:+43609827 None:intergenic
GGAAGAGAAATTCGTTTCGA+TGG 0.530586 5.4:-43612409 MS.gene59697:CDS
CACAGCACTACGCCAAGTAC+CGG 0.531875 5.4:-43610581 MS.gene59697:CDS
CCTCTCTTTCACTAAAACTG+TGG 0.537595 5.4:+43610673 None:intergenic
TGGCATGATGGATGGTGGGA+AGG 0.540826 5.4:-43609760 MS.gene59697:CDS
ATGCCTGGTGGCATGATGGA+TGG 0.541595 5.4:-43609768 MS.gene59697:CDS
CCACCATCCATCATGCCACC+AGG 0.546255 5.4:+43609765 None:intergenic
ACTGTAGCATCTATGGGAGA+TGG 0.548639 5.4:-43609408 MS.gene59697:CDS
CCCAGATCATCAGGTACCAC+AGG 0.548955 5.4:+43609877 None:intergenic
CGGTACTTGGCGTAGTGCTG+TGG 0.549279 5.4:+43610582 None:intergenic
CTGGTTTCACAGAATTGATG+AGG 0.549883 5.4:-43610712 MS.gene59697:CDS
TAGGCAGCCTGATACTTACT+CGG 0.552436 5.4:-43609376 MS.gene59697:CDS
CAAACTCTAGTGGTAGTTCA+GGG 0.555530 5.4:-43610416 MS.gene59697:CDS
CTTGTTCAAAAGAATTCACA+TGG 0.560554 5.4:-43611383 MS.gene59697:CDS
GTTTGGTAAGGATGATGTCA+AGG 0.560830 5.4:-43610511 MS.gene59697:CDS
GGCATTCTCGAGATTGGACA+GGG 0.564326 5.4:-43609533 MS.gene59697:CDS
CCTGGTGGCATGATGGATGG+TGG 0.564674 5.4:-43609765 MS.gene59697:CDS
GGTGGAAGTCATCCAGGAAG+AGG 0.569070 5.4:-43609275 MS.gene59697:CDS
AACCAGTAGCAGTAACAAGT+TGG 0.570662 5.4:-43610235 MS.gene59697:CDS
GATGGGTAAAGGTGAGGGAA+AGG 0.570981 5.4:-43609506 MS.gene59697:CDS
CTGGTGGCATGATGGATGGT+GGG 0.572784 5.4:-43609764 MS.gene59697:CDS
GGAATGGATGGGTAAAGGTG+AGG 0.573465 5.4:-43609512 MS.gene59697:CDS
GCATCAGACTGCAGAAACTT+CGG 0.573906 5.4:+43609192 None:intergenic
TTGAGAGAGGACCTCAACAT+TGG 0.574826 5.4:+43610128 None:intergenic
AACAGAGCAATGACATACAT+AGG 0.575434 5.4:-43609224 MS.gene59697:CDS
AAATCAACTGTAGCATCTAT+GGG 0.576521 5.4:-43609414 MS.gene59697:CDS
GAGGGTTCCGTAAAACTGGT+TGG 0.578848 5.4:-43610213 MS.gene59697:CDS
GTTGATGCCTGGTGGCATGA+TGG 0.579936 5.4:-43609772 MS.gene59697:CDS
TCACATGGTTAGGGTTACCC+TGG 0.580451 5.4:-43611368 MS.gene59697:CDS
ACAGTGGGATTAGAGGATGT+TGG 0.582052 5.4:-43610104 MS.gene59697:CDS
TCATGATGACTATAAATACC+AGG 0.583831 5.4:-43609130 MS.gene59697:CDS
CAGTAGCAGTAACAAGTTGG+AGG 0.584099 5.4:-43610232 MS.gene59697:CDS
CCTGTGGTACCTGATGATCT+GGG 0.587162 5.4:-43609877 MS.gene59697:CDS
GAAACGTGGAATATCATTCG+TGG 0.587500 5.4:-43609812 MS.gene59697:CDS
TTAGAGCTTCTGTTATCAAG+AGG 0.589868 5.4:-43610080 MS.gene59697:CDS
ATATCATTCGTGGGTGATGT+TGG 0.590093 5.4:-43609802 MS.gene59697:CDS
TTTGATATAACTCAAATGGA+GGG 0.591359 5.4:-43610486 MS.gene59697:CDS
TCTTGGTCCTCTCATCTACT+CGG 0.592590 5.4:+43609851 None:intergenic
TAGGGTTACCCTGGACATGT+AGG 0.595952 5.4:-43611359 MS.gene59697:CDS
AGGTCCTCTCTCAAGACAGT+GGG 0.596580 5.4:-43610119 MS.gene59697:CDS
AGTTCAGGGAAATCTGATGA+TGG 0.598540 5.4:-43610402 MS.gene59697:CDS
CTCGTACATGTCTTCCAAGT+AGG 0.600078 5.4:+43610767 None:intergenic
CACTAGAGTTTGACTCCACG+TGG 0.600930 5.4:+43610427 None:intergenic
GACATGTACGAGGGTTCCAA+AGG 0.601793 5.4:-43610756 MS.gene59697:CDS
ACTGGTTGGAACCACCAAGT+TGG 0.604816 5.4:-43610199 MS.gene59697:CDS
TATTTGCACCATGTAACTTG+AGG 0.611537 5.4:-43609554 MS.gene59697:CDS
CGTGCCGTCTTTAACCAACA+TGG 0.612820 5.4:-43609079 MS.gene59697:CDS
AATATGGCTGTGGGAAAACA+TGG 0.616030 5.4:-43611606 MS.gene59697:CDS
ACAAAGTTCCTGCAAATCTG+AGG 0.617490 5.4:-43609442 MS.gene59697:CDS
TATCAGGCATATCGGAAGAA+CGG 0.617850 5.4:-43611321 MS.gene59697:CDS
AGGCAGCCTGATACTTACTC+GGG 0.619512 5.4:-43609375 MS.gene59697:CDS
AAACGTGGAATATCATTCGT+GGG 0.627151 5.4:-43609811 MS.gene59697:CDS
AGGGATGCGAATATGGCTGT+GGG 0.627562 5.4:-43611615 MS.gene59697:CDS
TGAAAAGGGAAGGATCTCCC+TGG 0.627762 5.4:+43609112 None:intergenic
ATAACCATGTTGGTTAAAGA+CGG 0.629339 5.4:+43609075 None:intergenic
GGGTTCCAAAGGCAACAAGA+TGG 0.630417 5.4:-43610745 MS.gene59697:CDS
GAAGAAGCAACGGTGTACAA+AGG 0.632099 5.4:-43610331 MS.gene59697:CDS
GTTACATTGTTGATGCCTGG+TGG 0.632805 5.4:-43609780 MS.gene59697:CDS
GTGCAGCAAGAAGTTTGGTA+AGG 0.632888 5.4:-43610523 MS.gene59697:CDS
ACTGAGGAACTGAAAAGGGA+AGG 0.632917 5.4:+43609102 None:intergenic
TGGCGTAGTGCTGTGGACTG+AGG 0.634382 5.4:+43610589 None:intergenic
GAGGTCCTCTCTCAAGACAG+TGG 0.634450 5.4:-43610120 MS.gene59697:CDS
GGTTAAAGACGGCACGACTG+AGG 0.637232 5.4:+43609086 None:intergenic
CACGTGGAGTCAAACTCTAG+TGG 0.647874 5.4:-43610426 MS.gene59697:CDS
TCATCTACACATAACCATGT+TGG 0.651118 5.4:+43609065 None:intergenic
TAATCCCACTGTCTTGAGAG+AGG 0.651285 5.4:+43610115 None:intergenic
CTAGAGTTTGACTCCACGTG+GGG 0.651840 5.4:+43610429 None:intergenic
TAAGGCCAAAGAAGAAGCAA+CGG 0.653055 5.4:-43610341 MS.gene59697:CDS
CATGATGACTATAAATACCA+GGG 0.653722 5.4:-43609129 MS.gene59697:CDS
TGGGTCTCCGAGTAGATGAG+AGG 0.656912 5.4:-43609858 MS.gene59697:CDS
TCACGACATTCAGGATGCAG+AGG 0.660192 5.4:-43610031 MS.gene59697:CDS
AGTAGCAGTAACAAGTTGGA+GGG 0.665623 5.4:-43610231 MS.gene59697:CDS
GGATAAAGGTACTAGAAGAG+AGG 0.668051 5.4:-43612388 MS.gene59697:CDS
CTACTTGGAAGACATGTACG+AGG 0.672183 5.4:-43610766 MS.gene59697:CDS
GGATAAACTTAGAAAGACTG+AGG 0.673810 5.4:-43609340 MS.gene59697:CDS
GGAAGTTCCAGATCTTGTGA+AGG 0.675883 5.4:-43609319 MS.gene59697:CDS
GAGGCACAAAGACAAAGTGA+AGG 0.676396 5.4:-43610061 MS.gene59697:CDS
GGATGAAGCTAAGAAGCTCG+AGG 0.677654 5.4:-43610010 MS.gene59697:intron
TTATCGCAGAAGAAGAATGG+AGG 0.692820 5.4:+43610361 None:intergenic
TCCAGGAAGAGGAATCGAAG+TGG 0.703286 5.4:-43609264 MS.gene59697:CDS
ACTAGAGTTTGACTCCACGT+GGG 0.704632 5.4:+43610428 None:intergenic
CGACCACTATCAGAGAAACG+TGG 0.706299 5.4:-43609826 MS.gene59697:CDS
TACTTGGAAGACATGTACGA+GGG 0.709651 5.4:-43610765 MS.gene59697:CDS
GTAGTGCTGTGGACTGAGGA+CGG 0.713773 5.4:+43610593 None:intergenic
AGATTGGACAGGGAATGGAT+GGG 0.719923 5.4:-43609523 MS.gene59697:CDS
TCTCTTTCACTAAAACTGTG+GGG 0.748073 5.4:+43610675 None:intergenic
GAAGCAAATGTATCCCCACG+TGG 0.785568 5.4:-43610442 MS.gene59697:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATAAAATAATTCAATA+AGG + chr5.4:43610117-43610136 None:intergenic 10.0%
!!! TTTATATTTTTCATTAGTAT+TGG - chr5.4:43611583-43611602 MS.gene59697:CDS 10.0%
!!! TTTTTTATTAATTTTCTTGA+AGG - chr5.4:43611634-43611653 MS.gene59697:intron 10.0%
!! GTTAAGATTAATTAAGAAAA+AGG + chr5.4:43609395-43609414 None:intergenic 15.0%
!!! TTGTTAATTATTGTTTTCAT+TGG - chr5.4:43609747-43609766 MS.gene59697:CDS 15.0%
!!! TTTTAATAATGACTTTTTTC+TGG - chr5.4:43609842-43609861 MS.gene59697:CDS 15.0%
!! GGTATTAAATTCAATTATTG+TGG - chr5.4:43609998-43610017 MS.gene59697:intron 20.0%
!! TTAACTTCAAGATTAATAAG+AGG + chr5.4:43611951-43611970 None:intergenic 20.0%
!!! ATGTGTAAAATATTTTACAC+TGG + chr5.4:43610321-43610340 None:intergenic 20.0%
!!! CTGTTTTTTTTTTCTTTCTT+TGG - chr5.4:43610632-43610651 MS.gene59697:CDS 20.0%
!!! GCAAATATTGTTTTTATTGT+TGG + chr5.4:43610436-43610455 None:intergenic 20.0%
!!! TATTAATTTTCTTGAAGGAA+TGG - chr5.4:43611639-43611658 MS.gene59697:intron 20.0%
! AAAAACAAACAAGAAATCAG+TGG + chr5.4:43609825-43609844 None:intergenic 25.0%
! AAATATCATGTTTATTTCCC+AGG - chr5.4:43611845-43611864 MS.gene59697:intron 25.0%
! TTATTGTTGGTCGATTATAA+CGG + chr5.4:43610423-43610442 None:intergenic 25.0%
! TTTGATATAACTCAAATGGA+GGG - chr5.4:43611068-43611087 MS.gene59697:intron 25.0%
!! ATGTGAATTCTTTTGAACAA+GGG + chr5.4:43610172-43610191 None:intergenic 25.0%
!! ATGTTTTATCATTGCAGTTA+AGG - chr5.4:43612258-43612277 MS.gene59697:CDS 25.0%
!! TTTTGATATAACTCAAATGG+AGG - chr5.4:43611067-43611086 MS.gene59697:intron 25.0%
!!! GGATTTTGATATAACTCAAA+TGG - chr5.4:43611064-43611083 MS.gene59697:intron 25.0%
!!! TATTTTCTGAAGAAGAAAAG+TGG - chr5.4:43609194-43609213 MS.gene59697:CDS 25.0%
!!! TGTGTTTAGTGTTTATTTTG+TGG - chr5.4:43609527-43609546 MS.gene59697:CDS 25.0%
AAATCAACTGTAGCATCTAT+GGG - chr5.4:43612140-43612159 MS.gene59697:intron 30.0%
AAATTCGTTTCGATGGATAA+AGG - chr5.4:43609152-43609171 MS.gene59697:CDS 30.0%
ACAGAGCATACACAAAATTA+TGG + chr5.4:43611898-43611917 None:intergenic 30.0%
ACTAACTAACAGATTGTGAT+TGG + chr5.4:43610349-43610368 None:intergenic 30.0%
ATAAGAGGCCTAATATTACA+AGG + chr5.4:43611936-43611955 None:intergenic 30.0%
ATGAAAAAAGATACGTTACG+TGG - chr5.4:43609123-43609142 MS.gene59697:CDS 30.0%
CAAAAGAATTCACATGGTTA+GGG - chr5.4:43610177-43610196 MS.gene59697:CDS 30.0%
CAATCTGTTAGTTAGTTGTA+TGG - chr5.4:43610353-43610372 MS.gene59697:CDS 30.0%
CATGATGACTATAAATACCA+GGG - chr5.4:43612425-43612444 MS.gene59697:CDS 30.0%
CGCGATTTAAGTCTAAAAAA+AGG + chr5.4:43609305-43609324 None:intergenic 30.0%
CTTGTTCAAAAGAATTCACA+TGG - chr5.4:43610171-43610190 MS.gene59697:CDS 30.0%
GAAGAATCTGAAAATTTCAG+AGG + chr5.4:43609915-43609934 None:intergenic 30.0%
GTACAGAATATAAGAACAGA+AGG + chr5.4:43611876-43611895 None:intergenic 30.0%
GTCAGATTACAATACATTTG+AGG + chr5.4:43610671-43610690 None:intergenic 30.0%
TCAAAAGAATTCACATGGTT+AGG - chr5.4:43610176-43610195 MS.gene59697:CDS 30.0%
TCATGATGACTATAAATACC+AGG - chr5.4:43612424-43612443 MS.gene59697:CDS 30.0%
TGAAAAAAGATACGTTACGT+GGG - chr5.4:43609124-43609143 MS.gene59697:CDS 30.0%
TGGTTAGATTCTATTGTTCA+AGG - chr5.4:43609341-43609360 MS.gene59697:CDS 30.0%
TTAACATGAGAAGAGATTGA+AGG + chr5.4:43609800-43609819 None:intergenic 30.0%
TTATTGTTGCTCGATTACAA+CGG + chr5.4:43610573-43610592 None:intergenic 30.0%
TTCATTTGTCTCTTTGATTG+TGG + chr5.4:43611381-43611400 None:intergenic 30.0%
TTGAAGTTAATGTCTTTGCA+GGG - chr5.4:43611961-43611980 MS.gene59697:intron 30.0%
TTTGTCGTCCTTGTAATATT+AGG - chr5.4:43611925-43611944 MS.gene59697:intron 30.0%
! AATTTTCAGATTCTTCTTCC+AGG - chr5.4:43609919-43609938 MS.gene59697:intron 30.0%
! ATAACCATGTTGGTTAAAGA+CGG + chr5.4:43612482-43612501 None:intergenic 30.0%
! ATTTTCAGATTCTTCTTCCA+GGG - chr5.4:43609920-43609939 MS.gene59697:intron 30.0%
! CATGTGAATTCTTTTGAACA+AGG + chr5.4:43610173-43610192 None:intergenic 30.0%
! CGTTAATTCGAGTCTTTTAT+TGG - chr5.4:43609480-43609499 MS.gene59697:CDS 30.0%
! TTTTATCATTGCAGTTAAGG+TGG - chr5.4:43612261-43612280 MS.gene59697:CDS 30.0%
!!! TTTTGTGTTTGTTTTAGCAG+AGG - chr5.4:43610746-43610765 MS.gene59697:CDS 30.0%
AAAACATCCTTCACAAGATC+TGG + chr5.4:43612245-43612264 None:intergenic 35.0%
AAACGTGGAATATCATTCGT+GGG - chr5.4:43611743-43611762 MS.gene59697:intron 35.0%
AACAGAGCAATGACATACAT+AGG - chr5.4:43612330-43612349 MS.gene59697:CDS 35.0%
ATACTCAGACGTTGAAGATA+AGG + chr5.4:43610918-43610937 None:intergenic 35.0%
CAAATCAACTGTAGCATCTA+TGG - chr5.4:43612139-43612158 MS.gene59697:intron 35.0%
CTCTCTTTCACTAAAACTGT+GGG + chr5.4:43610883-43610902 None:intergenic 35.0%
CTTGAAGTTAATGTCTTTGC+AGG - chr5.4:43611960-43611979 MS.gene59697:intron 35.0%
GAAAAGAAGAAACCACTATC+AGG - chr5.4:43610217-43610236 MS.gene59697:CDS 35.0%
GAAGAAGAAAAGTGGTGAAT+TGG - chr5.4:43609202-43609221 MS.gene59697:CDS 35.0%
GAATTGGATCTTGCTCTTAT+TGG - chr5.4:43609218-43609237 MS.gene59697:CDS 35.0%
GGATAAACTTAGAAAGACTG+AGG - chr5.4:43612214-43612233 MS.gene59697:CDS 35.0%
TAACTCAAATGGAGGGTTAT+TGG - chr5.4:43611075-43611094 MS.gene59697:intron 35.0%
TATTTGCACCATGTAACTTG+AGG - chr5.4:43612000-43612019 MS.gene59697:intron 35.0%
TCATCTACACATAACCATGT+TGG + chr5.4:43612492-43612511 None:intergenic 35.0%
TCTCTTTCACTAAAACTGTG+GGG + chr5.4:43610882-43610901 None:intergenic 35.0%
TGAAGTTAATGTCTTTGCAG+GGG - chr5.4:43611962-43611981 MS.gene59697:intron 35.0%
TTAGAGCTTCTGTTATCAAG+AGG - chr5.4:43611474-43611493 MS.gene59697:intron 35.0%
TTGGTAAAGAGAAGAGTTCT+AGG - chr5.4:43609237-43609256 MS.gene59697:CDS 35.0%
TTTCACAGAATTGATGAGGT+TGG - chr5.4:43610846-43610865 MS.gene59697:intron 35.0%
!! CTGAGTATTGAATGCATAGA+TGG - chr5.4:43610930-43610949 MS.gene59697:intron 35.0%
!! GCTTTCGCAAATTGATTTTC+AGG - chr5.4:43610716-43610735 MS.gene59697:CDS 35.0%
!! TGATGCTACTGATAGTTTTG+TGG - chr5.4:43612379-43612398 MS.gene59697:CDS 35.0%
AACCAGTAGCAGTAACAAGT+TGG - chr5.4:43611319-43611338 MS.gene59697:CDS 40.0%
AACTTCTTGCTGCACACAAA+TGG + chr5.4:43611026-43611045 None:intergenic 40.0%
AAGAACAGAAGGTCATACCT+GGG + chr5.4:43611865-43611884 None:intergenic 40.0%
AATATGGCTGTGGGAAAACA+TGG - chr5.4:43609948-43609967 MS.gene59697:intron 40.0%
AATCAATTTGCGAAAGCAGC+AGG + chr5.4:43610713-43610732 None:intergenic 40.0%
AATGGAGGGTTATTGGAAAC+AGG - chr5.4:43611082-43611101 MS.gene59697:intron 40.0%
ACAAAGTTCCTGCAAATCTG+AGG - chr5.4:43612112-43612131 MS.gene59697:intron 40.0%
ACCTGAGATTGGAGATTTGA+AGG - chr5.4:43609977-43609996 MS.gene59697:intron 40.0%
ACCTTCAAATCTCCAATCTC+AGG + chr5.4:43609981-43610000 None:intergenic 40.0%
AGTTCAGGGAAATCTGATGA+TGG - chr5.4:43611152-43611171 MS.gene59697:intron 40.0%
ATATCATTCGTGGGTGATGT+TGG - chr5.4:43611752-43611771 MS.gene59697:intron 40.0%
ATTCCACGTTTCTCTGATAG+TGG + chr5.4:43611734-43611753 None:intergenic 40.0%
CAAACTCTAGTGGTAGTTCA+GGG - chr5.4:43611138-43611157 MS.gene59697:intron 40.0%
CATGGTTATGAACCTGAGAT+TGG - chr5.4:43609966-43609985 MS.gene59697:intron 40.0%
CCTCTCTTTCACTAAAACTG+TGG + chr5.4:43610884-43610903 None:intergenic 40.0%
CTGGTTTCACAGAATTGATG+AGG - chr5.4:43610842-43610861 MS.gene59697:intron 40.0%
GAAACCACTATCAGGCATAT+CGG - chr5.4:43610225-43610244 MS.gene59697:CDS 40.0%
GAAACGTGGAATATCATTCG+TGG - chr5.4:43611742-43611761 MS.gene59697:intron 40.0%
GCAATACAAGTCACAACATC+AGG + chr5.4:43612074-43612093 None:intergenic 40.0%
GCTTCACAGTATTTAGCTGT+AGG - chr5.4:43611401-43611420 MS.gene59697:CDS 40.0%
GGAAAAGATGCTGTTGAGTT+AGG - chr5.4:43611251-43611270 MS.gene59697:intron 40.0%
GGAAGAGAAATTCGTTTCGA+TGG - chr5.4:43609145-43609164 MS.gene59697:CDS 40.0%
GTTTGGTAAGGATGATGTCA+AGG - chr5.4:43611043-43611062 MS.gene59697:intron 40.0%
TAAGAACAGAAGGTCATACC+TGG + chr5.4:43611866-43611885 None:intergenic 40.0%
TAAGGCCAAAGAAGAAGCAA+CGG - chr5.4:43611213-43611232 MS.gene59697:intron 40.0%
TACAACCATCTTGTTGCCTT+TGG + chr5.4:43610817-43610836 None:intergenic 40.0%
TACTTGGAAGACATGTACGA+GGG - chr5.4:43610789-43610808 MS.gene59697:CDS 40.0%
TATCAGGCATATCGGAAGAA+CGG - chr5.4:43610233-43610252 MS.gene59697:CDS 40.0%
TCAAACTCTAGTGGTAGTTC+AGG - chr5.4:43611137-43611156 MS.gene59697:intron 40.0%
TCCATTCTTCTTCTGCGATA+AGG - chr5.4:43611195-43611214 MS.gene59697:intron 40.0%
TGATCAACCTTCAATGAAGC+TGG + chr5.4:43612407-43612426 None:intergenic 40.0%
TGGGAGATGGAATACAATCT+AGG - chr5.4:43612159-43612178 MS.gene59697:intron 40.0%
TTATCGCAGAAGAAGAATGG+AGG + chr5.4:43611196-43611215 None:intergenic 40.0%
TTGGTTACATTGTTGATGCC+TGG - chr5.4:43611771-43611790 MS.gene59697:intron 40.0%
TTTCTAGATCTCTTGCGTGT+GGG - chr5.4:43609604-43609623 MS.gene59697:intron 40.0%
TTTGTGTGCAGCAAGAAGTT+TGG - chr5.4:43611026-43611045 MS.gene59697:intron 40.0%
! AGTAGCAGTAACAAGTTGGA+GGG - chr5.4:43611323-43611342 MS.gene59697:CDS 40.0%
! CTTCTTTTCCTACATGTCCA+GGG + chr5.4:43610206-43610225 None:intergenic 40.0%
! TCTTCTTTTCCTACATGTCC+AGG + chr5.4:43610207-43610226 None:intergenic 40.0%
! TTACTCGGGTTCTTCTGAAA+AGG - chr5.4:43612193-43612212 MS.gene59697:intron 40.0%
! TTTTCTAGATCTCTTGCGTG+TGG - chr5.4:43609603-43609622 MS.gene59697:intron 40.0%
!! CCACAGTTTTAGTGAAAGAG+AGG - chr5.4:43610881-43610900 MS.gene59697:intron 40.0%
!! GGATAAAGGTACTAGAAGAG+AGG - chr5.4:43609166-43609185 MS.gene59697:CDS 40.0%
!!! CTTGTTACTGCTACTGGTTT+TGG + chr5.4:43611318-43611337 None:intergenic 40.0%
!!! GATTTTAGCTTCTAGACCTG+TGG - chr5.4:43611661-43611680 MS.gene59697:intron 40.0%
ACAAGATGGTTGTAGTTCGC+TGG - chr5.4:43610823-43610842 MS.gene59697:intron 45.0%
ACAGTGGGATTAGAGGATGT+TGG - chr5.4:43611450-43611469 MS.gene59697:intron 45.0%
ACTAGAGTTTGACTCCACGT+GGG + chr5.4:43611129-43611148 None:intergenic 45.0%
ACTGAGGAACTGAAAAGGGA+AGG + chr5.4:43612455-43612474 None:intergenic 45.0%
ACTGTAGCATCTATGGGAGA+TGG - chr5.4:43612146-43612165 MS.gene59697:intron 45.0%
AGATTGGACAGGGAATGGAT+GGG - chr5.4:43612031-43612050 MS.gene59697:intron 45.0%
AGCTGTAGGTTCCAATGTTG+AGG - chr5.4:43611415-43611434 MS.gene59697:intron 45.0%
AGTTAAGGTGGAAGTCATCC+AGG - chr5.4:43612273-43612292 MS.gene59697:CDS 45.0%
CAACGGTGTACAAAGGTTGA+TGG - chr5.4:43611230-43611249 MS.gene59697:intron 45.0%
CACGACTGAGGAACTGAAAA+GGG + chr5.4:43612459-43612478 None:intergenic 45.0%
CGAGAATGCCTCAAGTTACA+TGG + chr5.4:43612011-43612030 None:intergenic 45.0%
CGCGTACACAAGTTGTTCAT+TGG - chr5.4:43609321-43609340 MS.gene59697:CDS 45.0%
CTACTTGGAAGACATGTACG+AGG - chr5.4:43610788-43610807 MS.gene59697:CDS 45.0%
CTCGTACATGTCTTCCAAGT+AGG + chr5.4:43610790-43610809 None:intergenic 45.0%
CTCTTTGATTGTGGCCAACT+TGG + chr5.4:43611372-43611391 None:intergenic 45.0%
GAAGAACCCGAGTAAGTATC+AGG + chr5.4:43612188-43612207 None:intergenic 45.0%
GAAGAAGCAACGGTGTACAA+AGG - chr5.4:43611223-43611242 MS.gene59697:intron 45.0%
GAATGGATGGGTAAAGGTGA+GGG - chr5.4:43612043-43612062 MS.gene59697:intron 45.0%
GAGGCACAAAGACAAAGTGA+AGG - chr5.4:43611493-43611512 MS.gene59697:intron 45.0%
GCATCAGACTGCAGAAACTT+CGG + chr5.4:43612365-43612384 None:intergenic 45.0%
GCCTTATCGCAGAAGAAGAA+TGG + chr5.4:43611199-43611218 None:intergenic 45.0%
GGAAGTTCCAGATCTTGTGA+AGG - chr5.4:43612235-43612254 MS.gene59697:CDS 45.0%
GGTGCAATATCACGACATTC+AGG - chr5.4:43611514-43611533 MS.gene59697:intron 45.0%
GTACACCGTTGCTTCTTCTT+TGG + chr5.4:43611221-43611240 None:intergenic 45.0%
GTGCAGCAAGAAGTTTGGTA+AGG - chr5.4:43611031-43611050 MS.gene59697:intron 45.0%
GTTACATTGTTGATGCCTGG+TGG - chr5.4:43611774-43611793 MS.gene59697:intron 45.0%
TAATCCCACTGTCTTGAGAG+AGG + chr5.4:43611442-43611461 None:intergenic 45.0%
TAGGCAGCCTGATACTTACT+CGG - chr5.4:43612178-43612197 MS.gene59697:intron 45.0%
TCTCAAGACAGTGGGATTAG+AGG - chr5.4:43611443-43611462 MS.gene59697:intron 45.0%
TCTTCCGATATGCCTGATAG+TGG + chr5.4:43610232-43610251 None:intergenic 45.0%
TCTTGGTCCTCTCATCTACT+CGG + chr5.4:43611706-43611725 None:intergenic 45.0%
TGTGGTTCCAGCTTCATTGA+AGG - chr5.4:43612397-43612416 MS.gene59697:CDS 45.0%
TTCTAGATCTCTTGCGTGTG+GGG - chr5.4:43609605-43609624 MS.gene59697:intron 45.0%
TTCTTCCAGGGATGCGAATA+TGG - chr5.4:43609932-43609951 MS.gene59697:intron 45.0%
TTGAGAGAGGACCTCAACAT+TGG + chr5.4:43611429-43611448 None:intergenic 45.0%
TTGCTGCACACAAATGGTTC+TGG + chr5.4:43611020-43611039 None:intergenic 45.0%
TTTGATTGTGGCCAACTTGG+TGG + chr5.4:43611369-43611388 None:intergenic 45.0%
! ACTTGAGGCATTCTCGAGAT+TGG - chr5.4:43612015-43612034 MS.gene59697:intron 45.0%
! CACTGGCAAAGCATCAGAAT+TGG + chr5.4:43610304-43610323 None:intergenic 45.0%
! CAGTAGCAGTAACAAGTTGG+AGG - chr5.4:43611322-43611341 MS.gene59697:CDS 45.0%
! GGTGGTTCCAACCAGTTTTA+CGG + chr5.4:43611351-43611370 None:intergenic 45.0%
! TGGAGGTTTTCTTCCAGTTC+TGG + chr5.4:43611179-43611198 None:intergenic 45.0%
! TTTGCTGTCCTCAGATTTGC+AGG + chr5.4:43612123-43612142 None:intergenic 45.0%
!! ATCTGATGATGGACCAGAAC+TGG - chr5.4:43611163-43611182 MS.gene59697:intron 45.0%
!! CACGTTTCTCTGATAGTGGT+CGG + chr5.4:43611730-43611749 None:intergenic 45.0%
!! CTCCAACTTGTTACTGCTAC+TGG + chr5.4:43611324-43611343 None:intergenic 45.0%
!!! TATTTTATTTTGTTTTTTTA+GGG - chr5.4:43610125-43610144 MS.gene59697:CDS 5.0%
!!! TTAAAAAAGAAATTTTTATA+TGG + chr5.4:43609726-43609745 None:intergenic 5.0%
!!! TTATTTTATTTTGTTTTTTT+AGG - chr5.4:43610124-43610143 MS.gene59697:CDS 5.0%
ACCTGTGGTACCTGATGATC+TGG - chr5.4:43611676-43611695 MS.gene59697:intron 50.0%
ACTGGTTGGAACCACCAAGT+TGG - chr5.4:43611355-43611374 MS.gene59697:CDS 50.0%
AGCAGAGGAGAACAAACGTC+TGG - chr5.4:43610761-43610780 MS.gene59697:CDS 50.0%
AGGCAGCCTGATACTTACTC+GGG - chr5.4:43612179-43612198 MS.gene59697:intron 50.0%
AGGCATTCTCGAGATTGGAC+AGG - chr5.4:43612020-43612039 MS.gene59697:intron 50.0%
AGGGATGCGAATATGGCTGT+GGG - chr5.4:43609939-43609958 MS.gene59697:intron 50.0%
AGGTCCTCTCTCAAGACAGT+GGG - chr5.4:43611435-43611454 MS.gene59697:intron 50.0%
CAAACGTCTGGTTGCCTACT+TGG - chr5.4:43610773-43610792 MS.gene59697:CDS 50.0%
CACGTGGAGTCAAACTCTAG+TGG - chr5.4:43611128-43611147 MS.gene59697:intron 50.0%
CACTAGAGTTTGACTCCACG+TGG + chr5.4:43611130-43611149 None:intergenic 50.0%
CCTGTGGTACCTGATGATCT+GGG - chr5.4:43611677-43611696 MS.gene59697:intron 50.0%
CGACCACTATCAGAGAAACG+TGG - chr5.4:43611728-43611747 MS.gene59697:intron 50.0%
CGTGCCGTCTTTAACCAACA+TGG - chr5.4:43612475-43612494 MS.gene59697:CDS 50.0%
CTAGAGTTTGACTCCACGTG+GGG + chr5.4:43611128-43611147 None:intergenic 50.0%
GAAGCAAATGTATCCCCACG+TGG - chr5.4:43611112-43611131 MS.gene59697:intron 50.0%
GACAGGGAATGGATGGGTAA+AGG - chr5.4:43612037-43612056 MS.gene59697:intron 50.0%
GACATGTACGAGGGTTCCAA+AGG - chr5.4:43610798-43610817 MS.gene59697:CDS 50.0%
GAGATTGGACAGGGAATGGA+TGG - chr5.4:43612030-43612049 MS.gene59697:intron 50.0%
GAGGGTTCCGTAAAACTGGT+TGG - chr5.4:43611341-43611360 MS.gene59697:CDS 50.0%
GATGGGTAAAGGTGAGGGAA+AGG - chr5.4:43612048-43612067 MS.gene59697:intron 50.0%
GCACGACTGAGGAACTGAAA+AGG + chr5.4:43612460-43612479 None:intergenic 50.0%
GGAATGGATGGGTAAAGGTG+AGG - chr5.4:43612042-43612061 MS.gene59697:intron 50.0%
GGATGAAGCTAAGAAGCTCG+AGG - chr5.4:43611544-43611563 MS.gene59697:intron 50.0%
GGCATTCTCGAGATTGGACA+GGG - chr5.4:43612021-43612040 MS.gene59697:intron 50.0%
GGGTTCCAAAGGCAACAAGA+TGG - chr5.4:43610809-43610828 MS.gene59697:CDS 50.0%
GTTGGAGGGTTCCGTAAAAC+TGG - chr5.4:43611337-43611356 MS.gene59697:CDS 50.0%
TAGGGTTACCCTGGACATGT+AGG - chr5.4:43610195-43610214 MS.gene59697:CDS 50.0%
TCACATGGTTAGGGTTACCC+TGG - chr5.4:43610186-43610205 MS.gene59697:CDS 50.0%
TCACGACATTCAGGATGCAG+AGG - chr5.4:43611523-43611542 MS.gene59697:intron 50.0%
TCCAGGAAGAGGAATCGAAG+TGG - chr5.4:43612290-43612309 MS.gene59697:CDS 50.0%
TCTCGAGATTGGACAGGGAA+TGG - chr5.4:43612026-43612045 MS.gene59697:intron 50.0%
TGAAAAGGGAAGGATCTCCC+TGG + chr5.4:43612445-43612464 None:intergenic 50.0%
! TCTCTTGCGTGTGGGGTTTT+TGG - chr5.4:43609612-43609631 MS.gene59697:intron 50.0%
!! CTCTGATAGTGGTCGGATCT+TGG + chr5.4:43611723-43611742 None:intergenic 50.0%
!! TCGAGCTTTGTTCCGGTACT+TGG + chr5.4:43610988-43611007 None:intergenic 50.0%
!!! GGGGTTTTTGGTTGTGTCAC+TGG - chr5.4:43609624-43609643 MS.gene59697:intron 50.0%
ACTCGGAGACCCAGATCATC+AGG + chr5.4:43611689-43611708 None:intergenic 55.0%
CACAGCACTACGCCAAGTAC+CGG - chr5.4:43610973-43610992 MS.gene59697:intron 55.0%
CACAGCCATATTCGCATCCC+TGG + chr5.4:43609940-43609959 None:intergenic 55.0%
CAGGGATGCGAATATGGCTG+TGG - chr5.4:43609938-43609957 MS.gene59697:intron 55.0%
CCCAGATCATCAGGTACCAC+AGG + chr5.4:43611680-43611699 None:intergenic 55.0%
GAGGTCCTCTCTCAAGACAG+TGG - chr5.4:43611434-43611453 MS.gene59697:intron 55.0%
GCCACTTCGATTCCTCTTCC+TGG + chr5.4:43612294-43612313 None:intergenic 55.0%
GGTGGAAGTCATCCAGGAAG+AGG - chr5.4:43612279-43612298 MS.gene59697:CDS 55.0%
GGTTAAAGACGGCACGACTG+AGG + chr5.4:43612471-43612490 None:intergenic 55.0%
GTTGATGCCTGGTGGCATGA+TGG - chr5.4:43611782-43611801 MS.gene59697:intron 55.0%
TGGGTCTCCGAGTAGATGAG+AGG - chr5.4:43611696-43611715 MS.gene59697:intron 55.0%
! ATGCCTGGTGGCATGATGGA+TGG - chr5.4:43611786-43611805 MS.gene59697:intron 55.0%
! GTAGTGCTGTGGACTGAGGA+CGG + chr5.4:43610964-43610983 None:intergenic 55.0%
!! CTGGTGGCATGATGGATGGT+GGG - chr5.4:43611790-43611809 MS.gene59697:intron 55.0%
!! GAGCGTGTCGAGCTTTGTTC+CGG + chr5.4:43610995-43611014 None:intergenic 55.0%
!! TGGCATGATGGATGGTGGGA+AGG - chr5.4:43611794-43611813 MS.gene59697:intron 55.0%
CCACCATCCATCATGCCACC+AGG + chr5.4:43611792-43611811 None:intergenic 60.0%
CGGTACTTGGCGTAGTGCTG+TGG + chr5.4:43610975-43610994 None:intergenic 60.0%
! TGGCGTAGTGCTGTGGACTG+AGG + chr5.4:43610968-43610987 None:intergenic 60.0%
!! CCTGGTGGCATGATGGATGG+TGG - chr5.4:43611789-43611808 MS.gene59697:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 43609065 43612511 43609065 ID=MS.gene59697
chr5.4 mRNA 43609065 43612511 43609065 ID=MS.gene59697.t1;Parent=MS.gene59697
chr5.4 exon 43612214 43612511 43612214 ID=MS.gene59697.t1.exon1;Parent=MS.gene59697.t1
chr5.4 CDS 43612214 43612511 43612214 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
chr5.4 exon 43611578 43611648 43611578 ID=MS.gene59697.t1.exon2;Parent=MS.gene59697.t1
chr5.4 CDS 43611578 43611648 43611578 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
chr5.4 exon 43611308 43611430 43611308 ID=MS.gene59697.t1.exon3;Parent=MS.gene59697.t1
chr5.4 CDS 43611308 43611430 43611308 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
chr5.4 exon 43610011 43610838 43610011 ID=MS.gene59697.t1.exon4;Parent=MS.gene59697.t1
chr5.4 CDS 43610011 43610838 43610011 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
chr5.4 exon 43609710 43609920 43609710 ID=MS.gene59697.t1.exon5;Parent=MS.gene59697.t1
chr5.4 CDS 43609710 43609920 43609710 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
chr5.4 exon 43609065 43609594 43609065 ID=MS.gene59697.t1.exon6;Parent=MS.gene59697.t1
chr5.4 CDS 43609065 43609594 43609065 ID=cds.MS.gene59697.t1;Parent=MS.gene59697.t1
Gene Sequence

>MS.gene59697

ATGGCTTTGAAAGATAGATTGGCTTCATCTTCTGAAACGACGTCGTCACAAGATGAAAATGAAAAAAGATACGTTACGTGGGAAGAGAAATTCGTTTCGATGGATAAAGGTACTAGAAGAGAGGTTCGTTATTTTCTGAAGAAGAAAAGTGGTGAATTGGATCTTGCTCTTATTGGTAAAGAGAAGAGTTCTAGGCATATGAGTTATCATTATGCGATTCGAAACTCTTCTTTTGCTCCTTTTTTTAGACTTAAATCGCGTACACAAGTTGTTCATTGGTTAGATTCTATTGTTCAAGGTCAGTTTCGTTTGTATCTTAATTCATAACCTTTTTCTTAATTAATCTTAACAAAGTTTTTTTTTCAATGAACTCTGAGATTTGTTTTGTTTATTTTTCTTAATTTTCATCTTAATTCGTTAATTCGAGTCTTTTATTGGTTCAAGTTAATCTCTCTATTGTTTTGTGTTTAGTGTTTATTTTGTGGATTTTCTGAATTTTATGTCTGTTCTTTTTCGATTCTGTATTTGTAATTGTCTGTTTTCTAGATCTCTTGCGTGTGGGGTTTTTGGTTGTGTCACTGGTTTTGTGTCACTGATTCTTTGTTTTTGTTTTTTATAGATCTGAAATTGTTACGTATTTCAATTATATCTTTCTCGACCATATAAAAATTTCTTTTTTAATTTGTTAATTATTGTTTTCATTGGTTCGTTATGATTTTTTGTTTTCATTTTCCTTCAATCTCTTCTCATGTTAATACCACTGATTTCTTGTTTGTTTTTTAATAATGACTTTTTTCTGGATAATATTTTTTTTCGATGTAATTGAAGTTAAAAATTGTTCTGTTTGCCTCTGAAATTTTCAGATTCTTCTTCCAGGGATGCGAATATGGCTGTGGGAAAACATGGTTATGAACCTGAGATTGGAGATTTGAAGGTATTAAATTCAATTATTGTGGTTATGTTGATTAATGATGATTAATGATAATGATTCTGTTTGTTCAAAAAAAATGATAATGATTCTCTAAATTAATTTTGTATCAAATTACATTCCTTATTGAATTATTTTATTTTGTTTTTTTAGGGTAATCAATTGCAGACGCTGCACCCTTGTTCAAAAGAATTCACATGGTTAGGGTTACCCTGGACATGTAGGAAAAGAAGAAACCACTATCAGGCATATCGGAAGAACGGCTTTCAGATATCTGTGAGTCATCATCATCTCTGTTTTTTTTTATACCAATTCTGATGCTTTGCCAGTGTAAAATATTTTACACATGTCAACCAATCACAATCTGTTAGTTAGTTGTATGGTTTTAAGTTAGAGATGATGAAAGTCAGTTTTTCTTAAGATCTAACCGTTATAATCGACCAACAATAAAAACAATATTTGCACTGTCAGTGCATAAAAGTTATATCTCTCTGTTTTTTGTTTCTTTAGCTATTTGTCAGTTGTATAGTTTTAAGTTAGAGATGATGAAAGTCAGTTTTTTTTTTTTAAGATCTAACCGTTGTAATCGAGCAACAATAAAAACAATCTTTGCACTGTCAGTGCATAAAAGTTATATCTCTGTTTTTTTTTTCTTTCTTTGGCTATTTGTGTTTGCCTCAAATGTATTGTAATCTGACTTTTGTAATATTGATTTTTCCTGCTGCTTTCGCAAATTGATTTTCAGGTGTATGATTTTGTGTTTGTTTTAGCAGAGGAGAACAAACGTCTGGTTGCCTACTTGGAAGACATGTACGAGGGTTCCAAAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTTTTGTTTTGCCCCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCCTTATCTTCAACGTCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCACAGCACTACGCCAAGTACCGGAACAAAGCTCGACACGCTCGTCCAGAACCATTTGTGTGCAGCAAGAAGTTTGGTAAGGATGATGTCAAGGATTTTGATATAACTCAAATGGAGGGTTATTGGAAACAGGAAATACTGAAGCAAATGTATCCCCACGTGGAGTCAAACTCTAGTGGTAGTTCAGGGAAATCTGATGATGGACCAGAACTGGAAGAAAACCTCCATTCTTCTTCTGCGATAAGGCCAAAGAAGAAGCAACGGTGTACAAAGGTTGATGGAAAAGATGCTGTTGAGTTAGGTTCTCTTCAATTAGAAAAATTGAGTAATTGTAAGATTGATGCCAAAACCAGTAGCAGTAACAAGTTGGAGGGTTCCGTAAAACTGGTTGGAACCACCAAGTTGGCCACAATCAAAGAGACAAATGAAGCTTCACAGTATTTAGCTGTAGGTTCCAATGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTTAGAGCTTCTGTTATCAAGAGGCACAAAGACAAAGTGAAGGTGCAATATCACGACATTCAGGATGCAGAGGATGAAGCTAAGAAGCTCGAGGTGTGTTAAAATTATCTTTTATATTTTTCATTAGTATTGGTAGACTTGCTGTATGACATGACTGACATTTTTTTATTAATTTTCTTGAAGGAATGGATTTTAGCTTCTAGACCTGTGGTACCTGATGATCTGGGTCTCCGAGTAGATGAGAGGACCAAGATCCGACCACTATCAGAGAAACGTGGAATATCATTCGTGGGTGATGTTGGTTACATTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAATCTGATGATAAATATCATGTTTATTTCCCAGGTATGACCTTCTGTTCTTATATTCTGTACCATAATTTTGTGTATGCTCTGTAAATGTTTTTGTCGTCCTTGTAATATTAGGCCTCTTATTAATCTTGAAGTTAATGTCTTTGCAGGGGAAAAGAAGATGTCAATATTTGCACCATGTAACTTGAGGCATTCTCGAGATTGGACAGGGAATGGATGGGTAAAGGTGAGGGAAAGGCCTGATGTTGTGACTTGTATTGCATCAAGCTTGAAAACAAAACAAAGTTCCTGCAAATCTGAGGACAGCAAATCAACTGTAGCATCTATGGGAGATGGAATACAATCTAGGCAGCCTGATACTTACTCGGGTTCTTCTGAAAAGGATAAACTTAGAAAGACTGAGGAAGTTCCAGATCTTGTGAAGGATGTTTTATCATTGCAGTTAAGGTGGAAGTCATCCAGGAAGAGGAATCGAAGTGGCACTTCTCAGCAGAAGCAACAGAGCAATGACATACATAGGAAATTGTCGCCGAAGTTTCTGCAGTCTGATGCTACTGATAGTTTTGTGGTTCCAGCTTCATTGAAGGTTGATCATGATGACTATAAATACCAGGGAGATCCTTCCCTTTTCAGTTCCTCAGTCGTGCCGTCTTTAACCAACATGGTTATGTGTAGATGA

Protein sequence

>MS.gene59697.t1

MALKDRLASSSETTSSQDENEKRYVTWEEKFVSMDKGTRREVRYFLKKKSGELDLALIGKEKSSRHMSYHYAIRNSSFAPFFRLKSRTQVVHWLDSIVQDSSSRDANMAVGKHGYEPEIGDLKGNQLQTLHPCSKEFTWLGLPWTCRKRRNHYQAYRKNGFQISVYDFVFVLAEENKRLVAYLEDMYEGSKGNKMVVVRWFHRIDEVGFVLPHSFSEREVYFSPYLQRLSIECIDGLTSVLSPQHYAKYRNKARHARPEPFVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGSSGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKIDAKTSSSNKLEGSVKLVGTTKLATIKETNEASQYLAVGSNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEAKKLEEWILASRPVVPDDLGLRVDERTKIRPLSEKRGISFVGDVGYIVDAWWHDGWWEGIVVQKESDDKYHVYFPGEKKMSIFAPCNLRHSRDWTGNGWVKVRERPDVVTCIASSLKTKQSSCKSEDSKSTVASMGDGIQSRQPDTYSGSSEKDKLRKTEEVPDLVKDVLSLQLRWKSSRKRNRSGTSQQKQQSNDIHRKLSPKFLQSDATDSFVVPASLKVDHDDYKYQGDPSLFSSSVVPSLTNMVMCR