Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53612.t1 | XP_013467164.1 | 98 | 650 | 13 | 0 | 1 | 650 | 1 | 650 | 0.00E+00 | 1239.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53612.t1 | Q5F259 | 32.8 | 271 | 155 | 6 | 52 | 308 | 31 | 288 | 9.1e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53612.t1 | A0A072VSU6 | 98.0 | 650 | 13 | 0 | 1 | 650 | 1 | 650 | 0.0e+00 | 1239.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene53612 | 0.819628 | 1.05E-52 | -1.69E-46 |
| MS.gene04919 | MS.gene53612 | 0.835881 | 1.30E-56 | -1.69E-46 |
| MS.gene04920 | MS.gene53612 | 0.850227 | 1.95E-60 | -1.69E-46 |
| MS.gene049283 | MS.gene53612 | 0.862465 | 4.97E-64 | -1.69E-46 |
| MS.gene049368 | MS.gene53612 | 0.806624 | 7.52E-50 | -1.69E-46 |
| MS.gene049419 | MS.gene53612 | -0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene53612 | 0.818748 | 1.67E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene53612 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene53612 | 0.85748 | 1.59E-62 | -1.69E-46 |
| MS.gene04998 | MS.gene53612 | 0.807176 | 5.75E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene53612 | 0.806168 | 9.38E-50 | -1.69E-46 |
| MS.gene050571 | MS.gene53612 | 0.808286 | 3.34E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene53612 | 0.811893 | 5.57E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene53612 | 0.836063 | 1.17E-56 | -1.69E-46 |
| MS.gene050941 | MS.gene53612 | 0.823278 | 1.51E-53 | -1.69E-46 |
| MS.gene050945 | MS.gene53612 | 0.823222 | 1.56E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene53612 | 0.815736 | 7.93E-52 | -1.69E-46 |
| MS.gene051154 | MS.gene53612 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene53612 | 0.857688 | 1.38E-62 | -1.69E-46 |
| MS.gene051597 | MS.gene53612 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene051637 | MS.gene53612 | 0.804246 | 2.37E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene53612 | 0.800508 | 1.39E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene53612 | 0.82612 | 3.23E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene53612 | 0.804522 | 2.08E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene53612 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene53612 | 0.832037 | 1.19E-55 | -1.69E-46 |
| MS.gene052016 | MS.gene53612 | 0.804377 | 2.22E-49 | -1.69E-46 |
| MS.gene052118 | MS.gene53612 | 0.827163 | 1.82E-54 | -1.69E-46 |
| MS.gene052197 | MS.gene53612 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene53612 | 0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene53612 | 0.80847 | 3.05E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene53612 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene53612 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene53612 | 0.802932 | 4.44E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene53612 | 0.82285 | 1.90E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene53612 | -0.820032 | 8.50E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene53612 | 0.819984 | 8.72E-53 | -1.69E-46 |
| MS.gene053564 | MS.gene53612 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene53612 | 0.82089 | 5.40E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene53612 | 0.83618 | 1.09E-56 | -1.69E-46 |
| MS.gene054178 | MS.gene53612 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene054222 | MS.gene53612 | 0.801761 | 7.73E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene53612 | 0.836838 | 7.40E-57 | -1.69E-46 |
| MS.gene054892 | MS.gene53612 | 0.869623 | 2.70E-66 | -1.69E-46 |
| MS.gene054893 | MS.gene53612 | 0.867265 | 1.55E-65 | -1.69E-46 |
| MS.gene054957 | MS.gene53612 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene53612 | 0.809452 | 1.88E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene53612 | 0.800935 | 1.14E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene53612 | 0.838964 | 2.10E-57 | -1.69E-46 |
| MS.gene055841 | MS.gene53612 | 0.808228 | 3.43E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene53612 | 0.851196 | 1.04E-60 | -1.69E-46 |
| MS.gene056174 | MS.gene53612 | 0.812603 | 3.90E-51 | -1.69E-46 |
| MS.gene056509 | MS.gene53612 | 0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene53612 | 0.83574 | 1.41E-56 | -1.69E-46 |
| MS.gene056776 | MS.gene53612 | 0.829666 | 4.53E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene53612 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene056825 | MS.gene53612 | 0.806156 | 9.43E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene53612 | 0.827593 | 1.44E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene53612 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene53612 | 0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene056973 | MS.gene53612 | 0.83486 | 2.35E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene53612 | 0.817444 | 3.29E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene53612 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene53612 | 0.847962 | 8.30E-60 | -1.69E-46 |
| MS.gene057155 | MS.gene53612 | 0.830468 | 2.89E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene53612 | 0.858374 | 8.61E-63 | -1.69E-46 |
| MS.gene057598 | MS.gene53612 | 0.819943 | 8.90E-53 | -1.69E-46 |
| MS.gene057622 | MS.gene53612 | 0.81543 | 9.28E-52 | -1.69E-46 |
| MS.gene057890 | MS.gene53612 | -0.839224 | 1.80E-57 | -1.69E-46 |
| MS.gene057893 | MS.gene53612 | -0.821601 | 3.70E-53 | -1.69E-46 |
| MS.gene057919 | MS.gene53612 | 0.805976 | 1.03E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene53612 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene058159 | MS.gene53612 | 0.818863 | 1.57E-52 | -1.69E-46 |
| MS.gene058279 | MS.gene53612 | 0.809875 | 1.52E-50 | -1.69E-46 |
| MS.gene058355 | MS.gene53612 | 0.830287 | 3.20E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene53612 | 0.815642 | 8.33E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene53612 | 0.858134 | 1.02E-62 | -1.69E-46 |
| MS.gene058781 | MS.gene53612 | 0.807486 | 4.94E-50 | -1.69E-46 |
| MS.gene05878 | MS.gene53612 | 0.803949 | 2.73E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene53612 | 0.826962 | 2.03E-54 | -1.69E-46 |
| MS.gene059170 | MS.gene53612 | 0.813515 | 2.46E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene53612 | 0.848783 | 4.92E-60 | -1.69E-46 |
| MS.gene05985 | MS.gene53612 | -0.87408 | 8.93E-68 | -1.69E-46 |
| MS.gene059965 | MS.gene53612 | 0.807878 | 4.08E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene53612 | 0.804589 | 2.01E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene53612 | 0.8517 | 7.48E-61 | -1.69E-46 |
| MS.gene060365 | MS.gene53612 | 0.821356 | 4.22E-53 | -1.69E-46 |
| MS.gene060412 | MS.gene53612 | 0.818147 | 2.28E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene53612 | 0.820775 | 5.74E-53 | -1.69E-46 |
| MS.gene060527 | MS.gene53612 | 0.81572 | 8.00E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene53612 | 0.863469 | 2.44E-64 | -1.69E-46 |
| MS.gene060932 | MS.gene53612 | 0.840867 | 6.71E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene53612 | 0.849528 | 3.05E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene53612 | 0.857977 | 1.13E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene53612 | 0.871216 | 8.09E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene53612 | 0.861487 | 9.91E-64 | -1.69E-46 |
| MS.gene061160 | MS.gene53612 | 0.852801 | 3.64E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53612.t1 | MTR_1g046580 | 98.000 | 650 | 13 | 0 | 1 | 650 | 1 | 650 | 0.0 | 1306 |
| MS.gene53612.t1 | MTR_7g115580 | 56.162 | 641 | 246 | 12 | 5 | 631 | 29 | 648 | 0.0 | 677 |
| MS.gene53612.t1 | MTR_1g080310 | 53.448 | 638 | 249 | 11 | 5 | 636 | 3 | 598 | 0.0 | 633 |
| MS.gene53612.t1 | MTR_2g023450 | 43.423 | 631 | 257 | 10 | 8 | 626 | 19 | 561 | 2.52e-163 | 481 |
| MS.gene53612.t1 | MTR_1g046930 | 62.248 | 347 | 129 | 2 | 1 | 346 | 1 | 346 | 4.91e-147 | 438 |
| MS.gene53612.t1 | MTR_1g046930 | 57.386 | 176 | 65 | 3 | 474 | 647 | 401 | 568 | 8.33e-50 | 182 |
| MS.gene53612.t1 | MTR_1g115930 | 57.407 | 54 | 23 | 0 | 56 | 109 | 33 | 86 | 2.28e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53612.t1 | AT1G04780 | 70.827 | 665 | 167 | 13 | 4 | 649 | 6 | 662 | 0.0 | 888 |
| MS.gene53612.t1 | AT3G24210 | 61.965 | 631 | 198 | 10 | 1 | 630 | 1 | 590 | 0.0 | 744 |
| MS.gene53612.t1 | AT3G04470 | 53.282 | 655 | 223 | 12 | 5 | 631 | 3 | 602 | 0.0 | 667 |
| MS.gene53612.t1 | AT1G62050 | 43.297 | 649 | 271 | 14 | 9 | 627 | 18 | 599 | 8.64e-163 | 481 |
| MS.gene53612.t1 | AT1G11740 | 52.318 | 302 | 141 | 1 | 9 | 310 | 17 | 315 | 2.18e-105 | 333 |
| MS.gene53612.t1 | AT1G11740 | 47.368 | 171 | 62 | 4 | 479 | 628 | 364 | 527 | 1.57e-36 | 145 |
Find 157 sgRNAs with CRISPR-Local
Find 420 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACTTGGCTGTTAAATT+AGG | 0.055054 | 1.2:-29355599 | MS.gene53612:CDS |
| TTCACTTGGCTGTTAAATTA+GGG | 0.214370 | 1.2:-29355598 | MS.gene53612:CDS |
| CTTCAGACACTTACAAGATT+TGG | 0.232931 | 1.2:-29355304 | MS.gene53612:CDS |
| TGAAAAGGTGAGCGATTTAT+TGG | 0.236609 | 1.2:-29354553 | MS.gene53612:CDS |
| GGAAAAGGGGTGCGAATCTA+AGG | 0.266382 | 1.2:-29355283 | MS.gene53612:CDS |
| TGTCTAAAACAAATATATTT+AGG | 0.297109 | 1.2:-29355052 | MS.gene53612:CDS |
| CAATTCCACCAGATTATACT+TGG | 0.314172 | 1.2:-29350138 | MS.gene53612:CDS |
| AAGGGTTGAGGCCTATTCTT+TGG | 0.318760 | 1.2:-29354365 | MS.gene53612:CDS |
| GGGATTGATGTTGCAAAGTT+TGG | 0.320650 | 1.2:-29355812 | MS.gene53612:CDS |
| ATCTTGGTTTCAGTGGATAA+AGG | 0.328101 | 1.2:-29350233 | MS.gene53612:CDS |
| GCATATTCAGGTTGCCATTC+CGG | 0.336485 | 1.2:-29350392 | MS.gene53612:intron |
| AGCCCCTGGCTTGGGCAAAA+TGG | 0.339204 | 1.2:-29355439 | MS.gene53612:CDS |
| CAATTGCCTTCTTTCATCTT+CGG | 0.347048 | 1.2:+29354806 | None:intergenic |
| CTGTGATACCTTTCATTTCA+AGG | 0.359358 | 1.2:-29355334 | MS.gene53612:CDS |
| ATAATGCTTAATTATGATCT+TGG | 0.368969 | 1.2:+29355463 | None:intergenic |
| GAGCAAGCACTAACCTTAAC+AGG | 0.374657 | 1.2:+29354216 | None:intergenic |
| GCTGAAATGCTTATGGTTGT+TGG | 0.381013 | 1.2:-29355563 | MS.gene53612:CDS |
| AGAATTTACAGAAGAAGCTT+TGG | 0.383345 | 1.2:+29354440 | None:intergenic |
| GCATTATCAGCCCCTGGCTT+GGG | 0.383859 | 1.2:-29355447 | MS.gene53612:CDS |
| TCTACGCAAAGAGAACTTCT+TGG | 0.388331 | 1.2:+29354576 | None:intergenic |
| CAATCTCTGCTGTGATTGAT+AGG | 0.391403 | 1.2:-29355649 | MS.gene53612:CDS |
| CTCTAAAATCGAAACCGCTT+CGG | 0.395037 | 1.2:+29355688 | None:intergenic |
| GAAAAGGTGAGCGATTTATT+GGG | 0.399396 | 1.2:-29354552 | MS.gene53612:CDS |
| CTTGGTGATGGTTCAGAAGA+TGG | 0.403083 | 1.2:-29355194 | MS.gene53612:CDS |
| GGTGGAATTGCAAACGGGTC+TGG | 0.404701 | 1.2:+29350151 | None:intergenic |
| CAAATTTCTCTGCTTCATCT+TGG | 0.407176 | 1.2:-29350249 | MS.gene53612:CDS |
| ATAAAATCTAGAGGAGTTCC+TGG | 0.407650 | 1.2:-29354906 | MS.gene53612:CDS |
| TGGTCATAGTCCTGTTCATA+AGG | 0.411108 | 1.2:-29355792 | MS.gene53612:CDS |
| AGGATTATGGTGAGCTTAAG+AGG | 0.411282 | 1.2:-29355757 | MS.gene53612:CDS |
| CACTTACAAGATTTGGAAAA+GGG | 0.421955 | 1.2:-29355297 | MS.gene53612:CDS |
| AGGGCTGACATGACTTTGGC+TGG | 0.422895 | 1.2:-29355263 | MS.gene53612:CDS |
| GAACCTGCCGCAGATGAACT+AGG | 0.423474 | 1.2:+29350199 | None:intergenic |
| TTCTCTTTGCGTAGATGAAA+AGG | 0.429956 | 1.2:-29354568 | MS.gene53612:CDS |
| GTGTAGAAGGTTGCCTCGTT+TGG | 0.430443 | 1.2:-29355417 | MS.gene53612:CDS |
| AAACAGAAATGGTAGGATCT+TGG | 0.430531 | 1.2:-29354968 | MS.gene53612:CDS |
| GGTGAGCTTAAGAGGATACT+TGG | 0.431434 | 1.2:-29355749 | MS.gene53612:CDS |
| CTGCTTCATCTTGGTTTCAG+TGG | 0.434475 | 1.2:-29350240 | MS.gene53612:CDS |
| TTGTGCTGTTTAGGTATGGC+AGG | 0.436450 | 1.2:-29355833 | None:intergenic |
| GGTTTAATCTGATTACTTGA+AGG | 0.436796 | 1.2:+29354522 | None:intergenic |
| AGCATTATCAGCCCCTGGCT+TGG | 0.437529 | 1.2:-29355448 | MS.gene53612:CDS |
| GCAGAGAAATTTGTCGCTGC+AGG | 0.440610 | 1.2:+29350259 | None:intergenic |
| AAAATCACAGCCTTATGAAC+AGG | 0.440620 | 1.2:+29355782 | None:intergenic |
| CGAAGATGAAAGAAGGCAAT+TGG | 0.443916 | 1.2:-29354805 | MS.gene53612:CDS |
| CTACCGTTACCATCTTCAAT+AGG | 0.448638 | 1.2:+29354696 | None:intergenic |
| CGTGAAAATGAATATAAGAA+AGG | 0.451631 | 1.2:-29354384 | MS.gene53612:CDS |
| GATGGTAACGGTAGCATTAG+TGG | 0.453875 | 1.2:-29354687 | MS.gene53612:CDS |
| ACACTTACAAGATTTGGAAA+AGG | 0.454221 | 1.2:-29355298 | MS.gene53612:CDS |
| AGAGACATTCCTATTGAAGA+TGG | 0.456127 | 1.2:-29354705 | MS.gene53612:CDS |
| CCTGACATGGATGGACTTGT+CGG | 0.456807 | 1.2:+29350292 | None:intergenic |
| GAGAAGAACAAATCAAAGAA+AGG | 0.457216 | 1.2:-29350082 | MS.gene53612:CDS |
| TCAGTTGACTTGGAGGCGCC+AGG | 0.458205 | 1.2:-29354994 | MS.gene53612:CDS |
| GAAAATAAGCAGGAAAAGAA+AGG | 0.458780 | 1.2:-29354663 | MS.gene53612:CDS |
| ATCGTTAAGTTCTTCACTCT+CGG | 0.461882 | 1.2:+29354836 | None:intergenic |
| TGAGATCATGCAGAGTGATC+CGG | 0.463016 | 1.2:+29355160 | None:intergenic |
| AGTGGCTGCTGAAATGCTTA+TGG | 0.466309 | 1.2:-29355570 | MS.gene53612:CDS |
| AGAAAGGATGGTTTGGTGGA+TGG | 0.466730 | 1.2:-29354647 | MS.gene53612:CDS |
| ATTGGAGGATGCACTTAAGC+TGG | 0.468456 | 1.2:-29354787 | MS.gene53612:CDS |
| CAGGAAAAGAAAGGATGGTT+TGG | 0.470506 | 1.2:-29354654 | MS.gene53612:CDS |
| ACTTACAACAAAACTTCCAA+TGG | 0.475435 | 1.2:-29354247 | MS.gene53612:CDS |
| AGAAGAACAAATCAAAGAAA+GGG | 0.475808 | 1.2:-29350081 | MS.gene53612:CDS |
| TAATCTGGTGGAATTGCAAA+CGG | 0.477515 | 1.2:+29350145 | None:intergenic |
| ACTCTGATGGTGGGAACCAC+CGG | 0.477517 | 1.2:+29350373 | None:intergenic |
| ATGACTTTGGCTGGTTTCGA+CGG | 0.483089 | 1.2:-29355254 | MS.gene53612:CDS |
| CATGATCTCACACAAGGAAA+AGG | 0.485210 | 1.2:-29355147 | MS.gene53612:CDS |
| ATAGGAATGTCTCTAAAGCT+TGG | 0.492744 | 1.2:+29354714 | None:intergenic |
| TAGCGACGATGCGGAGGATG+AGG | 0.492963 | 1.2:-29355394 | MS.gene53612:CDS |
| CTTACAACAAAACTTCCAAT+GGG | 0.493342 | 1.2:-29354246 | MS.gene53612:CDS |
| CGCCCTAGTTCATCTGCGGC+AGG | 0.495868 | 1.2:-29350202 | MS.gene53612:CDS |
| GTGAAAATGAATATAAGAAA+GGG | 0.496015 | 1.2:-29354383 | MS.gene53612:CDS |
| CTTGGGCAAAATGGTGTAGA+AGG | 0.496971 | 1.2:-29355430 | MS.gene53612:CDS |
| TTCTGTTGAGGTTGTTGCGA+GGG | 0.501310 | 1.2:-29354490 | MS.gene53612:CDS |
| CGGCAGGTTCCAGCAGTAGT+AGG | 0.509685 | 1.2:-29350186 | MS.gene53612:CDS |
| GCAGTGACCCAAGTATAATC+TGG | 0.510448 | 1.2:+29350130 | None:intergenic |
| TCTAAGGGCTGACATGACTT+TGG | 0.515499 | 1.2:-29355267 | MS.gene53612:CDS |
| CCGACAAGTCCATCCATGTC+AGG | 0.516227 | 1.2:-29350292 | MS.gene53612:CDS |
| GTGAGCTTAAGAGGATACTT+GGG | 0.519970 | 1.2:-29355748 | MS.gene53612:CDS |
| TTTACCTAAGCTGTGTAATG+TGG | 0.520667 | 1.2:-29355723 | MS.gene53612:CDS |
| AATCTGGTGGAATTGCAAAC+GGG | 0.523683 | 1.2:+29350146 | None:intergenic |
| GCAGATGAACTAGGGCGGTA+TGG | 0.528840 | 1.2:+29350208 | None:intergenic |
| GCCTGGTATTGATGTTACTC+AGG | 0.530031 | 1.2:-29355030 | MS.gene53612:CDS |
| ATCTCTTCGCCTGACATGGA+TGG | 0.530443 | 1.2:+29350283 | None:intergenic |
| CTGAACAATGATAGTGATGA+GGG | 0.531253 | 1.2:-29354753 | MS.gene53612:CDS |
| TCATCGTCTGTCATAGCTCC+AGG | 0.531703 | 1.2:+29354888 | None:intergenic |
| AAAACAAATATATTTAGGCC+TGG | 0.531734 | 1.2:-29355047 | MS.gene53612:CDS |
| TAGCAGCAGAAGTCGTCATA+AGG | 0.532655 | 1.2:-29354415 | MS.gene53612:CDS |
| TCATGCAGAGTGATCCGGGC+TGG | 0.533564 | 1.2:+29355165 | None:intergenic |
| TGAAGAGGAGTATCACGATT+CGG | 0.534315 | 1.2:+29355617 | None:intergenic |
| TGGAGTTTGCAGAATGAACA+AGG | 0.535149 | 1.2:-29355533 | MS.gene53612:CDS |
| GGTGTCGCGAATTCATCTAA+TGG | 0.538540 | 1.2:+29350316 | None:intergenic |
| AATTAAGCATTATCAGCCCC+TGG | 0.539321 | 1.2:-29355453 | MS.gene53612:CDS |
| ACCTCAACAGAATGTCTCCC+TGG | 0.545970 | 1.2:+29354501 | None:intergenic |
| TTAACAGGAAAAGTTCCCAT+TGG | 0.546615 | 1.2:+29354231 | None:intergenic |
| TTGCGAGGGGCGATGAGCAA+CGG | 0.548155 | 1.2:-29354476 | MS.gene53612:CDS |
| GAGATCATGCAGAGTGATCC+GGG | 0.550659 | 1.2:+29355161 | None:intergenic |
| GCGCCAGGAGAAAACAGAAA+TGG | 0.553288 | 1.2:-29354979 | MS.gene53612:CDS |
| AGGGATCTCTTCGCCTGACA+TGG | 0.553716 | 1.2:+29350279 | None:intergenic |
| CAAATCTTGTAAGTGTCTGA+AGG | 0.555543 | 1.2:+29355305 | None:intergenic |
| TTATGGTTGTTGGTGCAGAT+TGG | 0.558191 | 1.2:-29355553 | MS.gene53612:CDS |
| GGTAGGATCTTGGAAAGCTA+AGG | 0.558300 | 1.2:-29354958 | MS.gene53612:CDS |
| TCTGTTGAGGTTGTTGCGAG+GGG | 0.559260 | 1.2:-29354489 | MS.gene53612:CDS |
| TGTGCTGTTTAGGTATGGCA+GGG | 0.560479 | 1.2:-29355832 | None:intergenic |
| GAAAAGAAAGGATGGTTTGG+TGG | 0.562638 | 1.2:-29354651 | MS.gene53612:CDS |
| TTTGCAACAATGTCAAGCAA+TGG | 0.563437 | 1.2:+29354303 | None:intergenic |
| AACCTGCCGCAGATGAACTA+GGG | 0.564043 | 1.2:+29350200 | None:intergenic |
| TTCGGCGAAAGCCAAAGAAT+AGG | 0.565770 | 1.2:+29354354 | None:intergenic |
| ATAAGCAGGAAAAGAAAGGA+TGG | 0.566965 | 1.2:-29354659 | MS.gene53612:CDS |
| AGATGAAAGAAGGCAATTGG+AGG | 0.568053 | 1.2:-29354802 | MS.gene53612:CDS |
| GGTTCCCACCATCAGAGTAT+TGG | 0.574488 | 1.2:-29350368 | MS.gene53612:CDS |
| TCACTTGGCTGTTAAATTAG+GGG | 0.574791 | 1.2:-29355597 | MS.gene53612:CDS |
| AGTGACCAATACTCTGATGG+TGG | 0.577816 | 1.2:+29350363 | None:intergenic |
| TCACCCACATTACACAGCTT+AGG | 0.579319 | 1.2:+29355719 | None:intergenic |
| CGCATCGTCGCTACCAAACG+AGG | 0.579484 | 1.2:+29355404 | None:intergenic |
| CATTAGTGGAGAAAATAAGC+AGG | 0.586148 | 1.2:-29354673 | MS.gene53612:CDS |
| AGCAGAAGTCGTCATAAGGA+CGG | 0.588338 | 1.2:-29354411 | MS.gene53612:CDS |
| ATTCTGTTGAGGTTGTTGCG+AGG | 0.594319 | 1.2:-29354491 | MS.gene53612:CDS |
| TCGTGATACTCCTCTTCACT+TGG | 0.594632 | 1.2:-29355612 | MS.gene53612:CDS |
| GGTGCAATCCTTGAAATGAA+AGG | 0.596454 | 1.2:+29355326 | None:intergenic |
| GATGGTGGGAACCACCGGAA+TGG | 0.596988 | 1.2:+29350378 | None:intergenic |
| ATGAATATAAGAAAGGGTTG+AGG | 0.600251 | 1.2:-29354377 | MS.gene53612:CDS |
| TCAAGTAATCAGATTAAACC+AGG | 0.601287 | 1.2:-29354519 | MS.gene53612:CDS |
| AATTTAACAGCCAAGTGAAG+AGG | 0.606406 | 1.2:+29355602 | None:intergenic |
| ACGCAAAGAGAACTTCTTGG+TGG | 0.607111 | 1.2:+29354579 | None:intergenic |
| CAGAGAAATTTGTCGCTGCA+GGG | 0.607492 | 1.2:+29350260 | None:intergenic |
| AATTCCACCAGATTATACTT+GGG | 0.608111 | 1.2:-29350137 | MS.gene53612:CDS |
| GAAGATGGTAAAGTCCAGCC+CGG | 0.611600 | 1.2:-29355179 | MS.gene53612:CDS |
| GTTGTAAGTATAAAATCTAG+AGG | 0.612791 | 1.2:-29354915 | MS.gene53612:CDS |
| TGAAGAAGTTCAGCAAGAAG+TGG | 0.613255 | 1.2:-29355081 | MS.gene53612:CDS |
| ACCAGGGAGACATTCTGTTG+AGG | 0.613862 | 1.2:-29354502 | MS.gene53612:CDS |
| GAAAAGGGGTGCGAATCTAA+GGG | 0.614309 | 1.2:-29355282 | MS.gene53612:CDS |
| CTCGTTTGGTAGCGACGATG+CGG | 0.615725 | 1.2:-29355403 | MS.gene53612:CDS |
| AGCGACGATGCGGAGGATGA+GGG | 0.618744 | 1.2:-29355393 | MS.gene53612:CDS |
| ACTGAACAATGATAGTGATG+AGG | 0.620972 | 1.2:-29354754 | MS.gene53612:CDS |
| CGAGGGGCGATGAGCAACGG+AGG | 0.623050 | 1.2:-29354473 | MS.gene53612:CDS |
| TTACCTAAGCTGTGTAATGT+GGG | 0.623380 | 1.2:-29355722 | MS.gene53612:CDS |
| GTTTGGTAGCGACGATGCGG+AGG | 0.629098 | 1.2:-29355400 | MS.gene53612:CDS |
| GTGACCCAAGTATAATCTGG+TGG | 0.630524 | 1.2:+29350133 | None:intergenic |
| GCCTGAGTAACATCAATACC+AGG | 0.632873 | 1.2:+29355029 | None:intergenic |
| GTGACCAATACTCTGATGGT+GGG | 0.634458 | 1.2:+29350364 | None:intergenic |
| CAGGAGAAAACAGAAATGGT+AGG | 0.637085 | 1.2:-29354975 | MS.gene53612:CDS |
| TATTCAGGTTGCCATTCCGG+TGG | 0.638406 | 1.2:-29350389 | MS.gene53612:intron |
| GGGTGAGATTTGTACCGAAG+CGG | 0.638620 | 1.2:-29355702 | MS.gene53612:CDS |
| GTTTGCAGAATGAACAAGGG+TGG | 0.641695 | 1.2:-29355529 | MS.gene53612:CDS |
| TGAGCTTAAGAGGATACTTG+GGG | 0.641820 | 1.2:-29355747 | MS.gene53612:CDS |
| ATTCCTATTGAAGATGGTAA+CGG | 0.643760 | 1.2:-29354699 | MS.gene53612:CDS |
| ACTTACAAGATTTGGAAAAG+GGG | 0.652824 | 1.2:-29355296 | MS.gene53612:CDS |
| TGGCGCCTCCAAGTCAACTG+AGG | 0.653180 | 1.2:+29354996 | None:intergenic |
| GATCTCACACAAGGAAAAGG+AGG | 0.660308 | 1.2:-29355144 | MS.gene53612:CDS |
| TGTTAAATTAGGGGATGAAG+TGG | 0.665433 | 1.2:-29355588 | MS.gene53612:CDS |
| AAAAGTGACCAATACTCTGA+TGG | 0.668899 | 1.2:+29350360 | None:intergenic |
| GACATGGATGGACTTGTCGG+CGG | 0.681897 | 1.2:+29350295 | None:intergenic |
| GGAGTTTGCAGAATGAACAA+GGG | 0.699547 | 1.2:-29355532 | MS.gene53612:CDS |
| CAAGTAATCAGATTAAACCA+GGG | 0.700115 | 1.2:-29354518 | MS.gene53612:CDS |
| ATACCGCCCTAGTTCATCTG+CGG | 0.706707 | 1.2:-29350206 | MS.gene53612:CDS |
| GAGCTTAAGAGGATACTTGG+GGG | 0.708775 | 1.2:-29355746 | MS.gene53612:CDS |
| TGAACAATGATAGTGATGAG+GGG | 0.712496 | 1.2:-29354752 | MS.gene53612:CDS |
| CTGCCGCAGATGAACTAGGG+CGG | 0.715429 | 1.2:+29350203 | None:intergenic |
| ACTCTGCATGATCTCACACA+AGG | 0.718060 | 1.2:-29355153 | MS.gene53612:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATTCCAAAATTAT+AGG | + | chr1.2:29354836-29354855 | None:intergenic | 10.0% |
| !! | AAAAAAATTCCAAAATTATA+GGG | + | chr1.2:29354835-29354854 | None:intergenic | 10.0% |
| !! | AAAACATATAATTAATTACA+AGG | + | chr1.2:29354071-29354090 | None:intergenic | 10.0% |
| !! | AAACATATAATTAATTACAA+GGG | + | chr1.2:29354070-29354089 | None:intergenic | 10.0% |
| !! | AATTCAATTAAAAAAAATCA+TGG | - | chr1.2:29354222-29354241 | MS.gene53612:intron | 10.0% |
| !!! | TCATTTTATCAAATTATTAT+CGG | + | chr1.2:29351881-29351900 | None:intergenic | 10.0% |
| !!! | TTTTTATTGCTTTAAATAAT+TGG | - | chr1.2:29353313-29353332 | MS.gene53612:intron | 10.0% |
| !! | AAAAAAAAAACAATACTATG+AGG | - | chr1.2:29352210-29352229 | MS.gene53612:intron | 15.0% |
| !! | AAAAAAATTAATAATCCCAT+AGG | + | chr1.2:29352754-29352773 | None:intergenic | 15.0% |
| !! | AAAAAATTAATAATCCCATA+GGG | + | chr1.2:29352753-29352772 | None:intergenic | 15.0% |
| !! | ATCATTGACATAAATAAATT+TGG | + | chr1.2:29355012-29355031 | None:intergenic | 15.0% |
| !! | TCATTGACATAAATAAATTT+GGG | + | chr1.2:29355011-29355030 | None:intergenic | 15.0% |
| !!! | ATTTTATCAAATTATTATCG+GGG | + | chr1.2:29351879-29351898 | None:intergenic | 15.0% |
| !!! | CATTTTATCAAATTATTATC+GGG | + | chr1.2:29351880-29351899 | None:intergenic | 15.0% |
| !!! | TCTAATTAGTTTGAATTTTA+TGG | - | chr1.2:29352514-29352533 | MS.gene53612:intron | 15.0% |
| !!! | TGTCTAAAACAAATATATTT+AGG | - | chr1.2:29350829-29350848 | MS.gene53612:intron | 15.0% |
| !!! | TTATTTTTATCCTTAGTTTT+TGG | + | chr1.2:29354624-29354643 | None:intergenic | 15.0% |
| !!! | TTTTAATTCAGACAATATTA+TGG | + | chr1.2:29352872-29352891 | None:intergenic | 15.0% |
| !!! | TTTTGTTTCTTTTGTATATT+TGG | - | chr1.2:29352783-29352802 | MS.gene53612:intron | 15.0% |
| !! | AAAAATTAATAATCCCATAG+GGG | + | chr1.2:29352752-29352771 | None:intergenic | 20.0% |
| !! | ACAAAAATTTAGGTAATAAG+TGG | + | chr1.2:29352936-29352955 | None:intergenic | 20.0% |
| !! | ACCACATTAAAAAAATTCAT+CGG | + | chr1.2:29355325-29355344 | None:intergenic | 20.0% |
| !! | ACTAAGGATAAAAATAACAA+AGG | - | chr1.2:29354627-29354646 | MS.gene53612:CDS | 20.0% |
| !! | ACTGTTATATCTTTCTTTAT+AGG | - | chr1.2:29355441-29355460 | MS.gene53612:CDS | 20.0% |
| !! | AGAGATATACATTAAATCTT+AGG | + | chr1.2:29354779-29354798 | None:intergenic | 20.0% |
| !! | ATAATGCTTAATTATGATCT+TGG | + | chr1.2:29350421-29350440 | None:intergenic | 20.0% |
| !! | ATGAATTATAAGTTACAATG+TGG | + | chr1.2:29353546-29353565 | None:intergenic | 20.0% |
| !! | ATGTGTAGTATTTATCTTTA+TGG | + | chr1.2:29354982-29355001 | None:intergenic | 20.0% |
| !! | CAAACAAAAAATTAAGTAGA+TGG | - | chr1.2:29354404-29354423 | MS.gene53612:CDS | 20.0% |
| !! | CAATACTAAATACAAATGTA+GGG | + | chr1.2:29352611-29352630 | None:intergenic | 20.0% |
| !! | CTAAGGATAAAAATAACAAA+GGG | - | chr1.2:29354628-29354647 | MS.gene53612:CDS | 20.0% |
| !! | GAATATAATTGATCATGTTT+CGG | - | chr1.2:29351909-29351928 | MS.gene53612:intron | 20.0% |
| !! | GTGAAAATGAATATAAGAAA+GGG | - | chr1.2:29351498-29351517 | MS.gene53612:intron | 20.0% |
| !! | TGGTAAAATAGATAAAAAGA+AGG | + | chr1.2:29354962-29354981 | None:intergenic | 20.0% |
| !! | TTATAAGATAGATATCTCTA+GGG | - | chr1.2:29353064-29353083 | MS.gene53612:intron | 20.0% |
| !! | TTCAAACTAATTAGATGAAA+TGG | + | chr1.2:29352509-29352528 | None:intergenic | 20.0% |
| !! | TTCTATCCAATCATAATTAA+TGG | + | chr1.2:29352654-29352673 | None:intergenic | 20.0% |
| !! | TTTAAATTATCCTTTCCTAT+TGG | - | chr1.2:29354676-29354695 | MS.gene53612:CDS | 20.0% |
| !! | TTTATAAGATAGATATCTCT+AGG | - | chr1.2:29353063-29353082 | MS.gene53612:intron | 20.0% |
| !!! | AAGAGTTCTTCAATTTTTAA+TGG | + | chr1.2:29351557-29351576 | None:intergenic | 20.0% |
| !!! | AGATTTAATCCCTATAATTT+TGG | - | chr1.2:29354823-29354842 | MS.gene53612:CDS | 20.0% |
| !!! | ATTTTAATGCTAATCATGAT+AGG | - | chr1.2:29354584-29354603 | MS.gene53612:CDS | 20.0% |
| !!! | GCTAAAAATATGAATTTTCT+GGG | - | chr1.2:29351709-29351728 | MS.gene53612:intron | 20.0% |
| !!! | TCAATTTTTAATGGAAAGTT+CGG | + | chr1.2:29351548-29351567 | None:intergenic | 20.0% |
| !!! | TTCTGATGAATTTTTTAATG+TGG | - | chr1.2:29355403-29355422 | MS.gene53612:CDS | 20.0% |
| !!! | TTTTGTATATTTGGATACAA+GGG | - | chr1.2:29352792-29352811 | MS.gene53612:intron | 20.0% |
| ! | AAAACAAAACTCAATCACAA+AGG | + | chr1.2:29353708-29353727 | None:intergenic | 25.0% |
| ! | AAAACAAATATATTTAGGCC+TGG | - | chr1.2:29350834-29350853 | MS.gene53612:intron | 25.0% |
| ! | AAACTAATTAGATGAAATGG+AGG | + | chr1.2:29352506-29352525 | None:intergenic | 25.0% |
| ! | AATAAGTAGACTTGAGAATA+AGG | + | chr1.2:29354929-29354948 | None:intergenic | 25.0% |
| ! | AATGTGATAAATAGAAGAGA+TGG | - | chr1.2:29354470-29354489 | MS.gene53612:CDS | 25.0% |
| ! | AGAAGAACAAATCAAAGAAA+GGG | - | chr1.2:29355800-29355819 | MS.gene53612:CDS | 25.0% |
| ! | AGAGATATATACATGAACAT+AGG | + | chr1.2:29353853-29353872 | None:intergenic | 25.0% |
| ! | AGTGAAAAAACCAAAAAAGA+TGG | + | chr1.2:29355375-29355394 | None:intergenic | 25.0% |
| ! | ATATGATATAAAACCGGATA+AGG | - | chr1.2:29353939-29353958 | MS.gene53612:intron | 25.0% |
| ! | ATGTGGTATTAATTGAATAG+AGG | + | chr1.2:29353529-29353548 | None:intergenic | 25.0% |
| ! | CAAAGATTCTATTAATCATG+CGG | + | chr1.2:29353815-29353834 | None:intergenic | 25.0% |
| ! | CACTTTCCATTAATTATGAT+TGG | - | chr1.2:29352645-29352664 | MS.gene53612:intron | 25.0% |
| ! | CGTGAAAATGAATATAAGAA+AGG | - | chr1.2:29351497-29351516 | MS.gene53612:intron | 25.0% |
| ! | CTCTCTATTTAAGCTTATTA+AGG | + | chr1.2:29352548-29352567 | None:intergenic | 25.0% |
| ! | GAAAAGATAACAATACTATG+AGG | - | chr1.2:29352069-29352088 | MS.gene53612:intron | 25.0% |
| ! | GAGATATATACATGAACATA+GGG | + | chr1.2:29353852-29353871 | None:intergenic | 25.0% |
| ! | GATAGGATATGATATAAAAC+CGG | - | chr1.2:29353933-29353952 | MS.gene53612:intron | 25.0% |
| ! | GCAATACTAAATACAAATGT+AGG | + | chr1.2:29352612-29352631 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAGTGATTGTA+GGG | - | chr1.2:29354425-29354444 | MS.gene53612:CDS | 25.0% |
| ! | GTATGTAATTAGGTAGATAT+AGG | - | chr1.2:29353876-29353895 | MS.gene53612:intron | 25.0% |
| ! | GTCTACAAATCATCATTATT+CGG | - | chr1.2:29352316-29352335 | MS.gene53612:intron | 25.0% |
| ! | GTTGTAAGTATAAAATCTAG+AGG | - | chr1.2:29350966-29350985 | MS.gene53612:intron | 25.0% |
| ! | TAATTAATGGAAAGTGAAAC+AGG | + | chr1.2:29352641-29352660 | None:intergenic | 25.0% |
| ! | TACTTTCATTTCTCAACTAT+AGG | - | chr1.2:29353584-29353603 | MS.gene53612:intron | 25.0% |
| ! | TAGAGGATATTATTACACAT+TGG | + | chr1.2:29353387-29353406 | None:intergenic | 25.0% |
| ! | TATCTCTGATGTATGTAATT+AGG | - | chr1.2:29353866-29353885 | MS.gene53612:intron | 25.0% |
| ! | TGATGCTATTAGATAGATAT+AGG | - | chr1.2:29354798-29354817 | MS.gene53612:CDS | 25.0% |
| ! | TGGAAAAAAAAAGTGATTGT+AGG | - | chr1.2:29354424-29354443 | MS.gene53612:CDS | 25.0% |
| ! | TGTGTAATAATATCCTCTAA+AGG | - | chr1.2:29353388-29353407 | MS.gene53612:intron | 25.0% |
| !! | AATCATCTTCCTTTTTCTTA+GGG | - | chr1.2:29354174-29354193 | MS.gene53612:intron | 25.0% |
| !! | ATCCTTTTACCTTATCAAAA+TGG | - | chr1.2:29352673-29352692 | MS.gene53612:intron | 25.0% |
| !! | CGCTAAAAATATGAATTTTC+TGG | - | chr1.2:29351708-29351727 | MS.gene53612:intron | 25.0% |
| !! | CTTTTGTATATTTGGATACA+AGG | - | chr1.2:29352791-29352810 | MS.gene53612:intron | 25.0% |
| !! | TCCTTTTACCTTATCAAAAT+GGG | - | chr1.2:29352674-29352693 | MS.gene53612:intron | 25.0% |
| !! | TTTAGTTTAGCACAAAAGAT+TGG | - | chr1.2:29355172-29355191 | MS.gene53612:CDS | 25.0% |
| !!! | AATTTTTTTAATGTGGTGGA+GGG | - | chr1.2:29355328-29355347 | MS.gene53612:CDS | 25.0% |
| !!! | CTACATATTAGTTTTGCTTT+AGG | - | chr1.2:29353632-29353651 | MS.gene53612:intron | 25.0% |
| !!! | GATGAATTTTTTTAATGTGG+TGG | - | chr1.2:29355324-29355343 | MS.gene53612:CDS | 25.0% |
| !!! | TCCGATGAATTTTTTTAATG+TGG | - | chr1.2:29355321-29355340 | MS.gene53612:CDS | 25.0% |
| !!! | TGATGAATTTTTTAATGTGG+TGG | - | chr1.2:29355406-29355425 | MS.gene53612:CDS | 25.0% |
| !!! | TTTTATCCTTAGTTTTTGGT+GGG | + | chr1.2:29354620-29354639 | None:intergenic | 25.0% |
| !!! | TTTTTATCCTTAGTTTTTGG+TGG | + | chr1.2:29354621-29354640 | None:intergenic | 25.0% |
| AAAAAAAAGTGATTGTAGGG+TGG | - | chr1.2:29354428-29354447 | MS.gene53612:CDS | 30.0% | |
| AAAAATAACAAAGGGTGAGT+AGG | - | chr1.2:29354636-29354655 | MS.gene53612:CDS | 30.0% | |
| AATTCCACCAGATTATACTT+GGG | - | chr1.2:29355744-29355763 | MS.gene53612:CDS | 30.0% | |
| ACACTTACAAGATTTGGAAA+AGG | - | chr1.2:29350583-29350602 | MS.gene53612:intron | 30.0% | |
| ACTTACAACAAAACTTCCAA+TGG | - | chr1.2:29351634-29351653 | MS.gene53612:intron | 30.0% | |
| ACTTACAAGATTTGGAAAAG+GGG | - | chr1.2:29350585-29350604 | MS.gene53612:intron | 30.0% | |
| AGAATTTACAGAAGAAGCTT+TGG | + | chr1.2:29351444-29351463 | None:intergenic | 30.0% | |
| AGTAGGATAGGATTAGAAAT+AGG | - | chr1.2:29354653-29354672 | MS.gene53612:CDS | 30.0% | |
| ATGAATATAAGAAAGGGTTG+AGG | - | chr1.2:29351504-29351523 | MS.gene53612:intron | 30.0% | |
| ATTACTCTTTCTGCATATTC+AGG | - | chr1.2:29355477-29355496 | MS.gene53612:CDS | 30.0% | |
| ATTAGGTAGATATAGGCTAA+CGG | - | chr1.2:29353883-29353902 | MS.gene53612:intron | 30.0% | |
| ATTATTACACATTGGTACTC+TGG | + | chr1.2:29353379-29353398 | None:intergenic | 30.0% | |
| ATTCCTATTGAAGATGGTAA+CGG | - | chr1.2:29351182-29351201 | MS.gene53612:intron | 30.0% | |
| CAAGTAATCAGATTAAACCA+GGG | - | chr1.2:29351363-29351382 | MS.gene53612:intron | 30.0% | |
| CACTTACAAGATTTGGAAAA+GGG | - | chr1.2:29350584-29350603 | MS.gene53612:intron | 30.0% | |
| CCATATAATATCACCTTTAG+AGG | + | chr1.2:29353404-29353423 | None:intergenic | 30.0% | |
| CGACGAAGTAACAAAAATTT+AGG | + | chr1.2:29352946-29352965 | None:intergenic | 30.0% | |
| CTTACAACAAAACTTCCAAT+GGG | - | chr1.2:29351635-29351654 | MS.gene53612:intron | 30.0% | |
| GAAAAGGATAGGTAAATACA+TGG | + | chr1.2:29353025-29353044 | None:intergenic | 30.0% | |
| GAAAATAAGCAGGAAAAGAA+AGG | - | chr1.2:29351218-29351237 | MS.gene53612:intron | 30.0% | |
| GAGAAGAACAAATCAAAGAA+AGG | - | chr1.2:29355799-29355818 | MS.gene53612:CDS | 30.0% | |
| GGTTTAATCTGATTACTTGA+AGG | + | chr1.2:29351362-29351381 | None:intergenic | 30.0% | |
| TAGAAAACCCTAAAATGTGT+AGG | + | chr1.2:29353680-29353699 | None:intergenic | 30.0% | |
| TCAAGTAATCAGATTAAACC+AGG | - | chr1.2:29351362-29351381 | MS.gene53612:intron | 30.0% | |
| TCAATGATCAGAAACTTTGT+TGG | - | chr1.2:29355024-29355043 | MS.gene53612:CDS | 30.0% | |
| TCTGTAATTGAAGAAGAAGA+CGG | + | chr1.2:29354203-29354222 | None:intergenic | 30.0% | |
| TTCACTTGGCTGTTAAATTA+GGG | - | chr1.2:29350283-29350302 | MS.gene53612:CDS | 30.0% | |
| TTGAGAGAAAGGGTAAAATA+AGG | - | chr1.2:29354561-29354580 | MS.gene53612:CDS | 30.0% | |
| TTTCAGAAGAAGAAAAGGAT+AGG | + | chr1.2:29353036-29353055 | None:intergenic | 30.0% | |
| ! | AAATCCTTCCTACACATTTT+AGG | - | chr1.2:29353669-29353688 | MS.gene53612:intron | 30.0% |
| ! | AATCCTTCCTACACATTTTA+GGG | - | chr1.2:29353670-29353689 | MS.gene53612:intron | 30.0% |
| ! | AGTTGTTTCAGAAGAAGAAA+AGG | + | chr1.2:29353041-29353060 | None:intergenic | 30.0% |
| ! | ATAAAGGAGTGTGCTTTAAA+AGG | - | chr1.2:29353145-29353164 | MS.gene53612:intron | 30.0% |
| ! | ATACTAATTTCTAGAGAACC+TGG | + | chr1.2:29355060-29355079 | None:intergenic | 30.0% |
| ! | ATCATCTTCCTTTTTCTTAG+GGG | - | chr1.2:29354175-29354194 | MS.gene53612:intron | 30.0% |
| ! | CAATCATCTTCCTTTTTCTT+AGG | - | chr1.2:29354173-29354192 | MS.gene53612:intron | 30.0% |
| ! | CCTCTAAAGGTGATATTATA+TGG | - | chr1.2:29353401-29353420 | MS.gene53612:intron | 30.0% |
| ! | GTAACAAGCAAGAGTATAAT+TGG | + | chr1.2:29351786-29351805 | None:intergenic | 30.0% |
| ! | TAGCTTGAATTATTAGCTCT+AGG | + | chr1.2:29354893-29354912 | None:intergenic | 30.0% |
| ! | TAGTGGACAAATGAATATTC+TGG | + | chr1.2:29352838-29352857 | None:intergenic | 30.0% |
| ! | TTGTAGCACCAATGTTTTAT+GGG | - | chr1.2:29352428-29352447 | MS.gene53612:intron | 30.0% |
| ! | TTGTTTTCAGATAGTAAGTC+AGG | - | chr1.2:29353721-29353740 | MS.gene53612:intron | 30.0% |
| !! | GATCAAAGTGTTCTTTTTCT+TGG | - | chr1.2:29350669-29350688 | MS.gene53612:intron | 30.0% |
| !! | GTGAGTTCTTTTTCACATAA+AGG | - | chr1.2:29353129-29353148 | MS.gene53612:intron | 30.0% |
| !! | TCCCATTTTGATAAGGTAAA+AGG | + | chr1.2:29352678-29352697 | None:intergenic | 30.0% |
| !! | TTTTTGTTACTTCGTCGTAT+TGG | - | chr1.2:29352949-29352968 | MS.gene53612:intron | 30.0% |
| !!! | GAATTTTTTAATGTGGTGGA+GGG | - | chr1.2:29355410-29355429 | MS.gene53612:CDS | 30.0% |
| !!! | GAATTTTTTTAATGTGGTGG+AGG | - | chr1.2:29355327-29355346 | MS.gene53612:CDS | 30.0% |
| !!! | TGAATTTTTTAATGTGGTGG+AGG | - | chr1.2:29355409-29355428 | MS.gene53612:CDS | 30.0% |
| AAAAGTGACCAATACTCTGA+TGG | + | chr1.2:29355524-29355543 | None:intergenic | 35.0% | |
| AAACAAGAAACAGCAGGAAA+AGG | + | chr1.2:29352976-29352995 | None:intergenic | 35.0% | |
| AAACAGAAATGGTAGGATCT+TGG | - | chr1.2:29350913-29350932 | MS.gene53612:intron | 35.0% | |
| AAACCCTAAAATGTGTAGGA+AGG | + | chr1.2:29353676-29353695 | None:intergenic | 35.0% | |
| AAAGTAACTCCACACATATC+AGG | + | chr1.2:29355258-29355277 | None:intergenic | 35.0% | |
| AAGAAATAGACAGAGAAGAG+GGG | - | chr1.2:29352041-29352060 | MS.gene53612:intron | 35.0% | |
| AATACTATGAGGAAACCCAT+AGG | - | chr1.2:29352080-29352099 | MS.gene53612:intron | 35.0% | |
| AATGTTTCAAGCGCTATACA+TGG | + | chr1.2:29352483-29352502 | None:intergenic | 35.0% | |
| AATTTAACAGCCAAGTGAAG+AGG | + | chr1.2:29350282-29350301 | None:intergenic | 35.0% | |
| ACAGTAGATTGAAACAGGAT+AGG | - | chr1.2:29354707-29354726 | MS.gene53612:CDS | 35.0% | |
| ACCAAACAGTAGATTGAAAC+AGG | - | chr1.2:29354702-29354721 | MS.gene53612:CDS | 35.0% | |
| AGACAATATTATGGAGCAAG+AGG | + | chr1.2:29352863-29352882 | None:intergenic | 35.0% | |
| AGAGACATTCCTATTGAAGA+TGG | - | chr1.2:29351176-29351195 | MS.gene53612:intron | 35.0% | |
| ATAAAATCTAGAGGAGTTCC+TGG | - | chr1.2:29350975-29350994 | MS.gene53612:intron | 35.0% | |
| ATAAGCAGGAAAAGAAAGGA+TGG | - | chr1.2:29351222-29351241 | MS.gene53612:intron | 35.0% | |
| ATATAAAACCGGATAAGGAC+AGG | - | chr1.2:29353944-29353963 | MS.gene53612:intron | 35.0% | |
| ATATCATGCATGTCATGTGT+TGG | - | chr1.2:29351978-29351997 | MS.gene53612:intron | 35.0% | |
| ATCATATCTTGTGCACCAAA+CGG | + | chr1.2:29353910-29353929 | None:intergenic | 35.0% | |
| ATCGTTAAGTTCTTCACTCT+CGG | + | chr1.2:29351048-29351067 | None:intergenic | 35.0% | |
| ATCTAGTTAATGACCCCTAT+GGG | - | chr1.2:29352736-29352755 | MS.gene53612:intron | 35.0% | |
| ATCTTGGTTTCAGTGGATAA+AGG | - | chr1.2:29355648-29355667 | MS.gene53612:CDS | 35.0% | |
| CAAATCTTGTAAGTGTCTGA+AGG | + | chr1.2:29350579-29350598 | None:intergenic | 35.0% | |
| CAAATTTCTCTGCTTCATCT+TGG | - | chr1.2:29355632-29355651 | MS.gene53612:CDS | 35.0% | |
| CAAGAAATAGACAGAGAAGA+GGG | - | chr1.2:29352040-29352059 | MS.gene53612:intron | 35.0% | |
| CAATTCCACCAGATTATACT+TGG | - | chr1.2:29355743-29355762 | MS.gene53612:CDS | 35.0% | |
| CAATTGCCTTCTTTCATCTT+CGG | + | chr1.2:29351078-29351097 | None:intergenic | 35.0% | |
| CATGTTATGAAAAACCAGCA+TGG | - | chr1.2:29351826-29351845 | MS.gene53612:intron | 35.0% | |
| CATTAGTGGAGAAAATAAGC+AGG | - | chr1.2:29351208-29351227 | MS.gene53612:intron | 35.0% | |
| CTAAATTAGCCCACCTAAAT+TGG | + | chr1.2:29352180-29352199 | None:intergenic | 35.0% | |
| CTGTGATACCTTTCATTTCA+AGG | - | chr1.2:29350547-29350566 | MS.gene53612:intron | 35.0% | |
| CTTCACTTGGCTGTTAAATT+AGG | - | chr1.2:29350282-29350301 | MS.gene53612:CDS | 35.0% | |
| CTTCAGACACTTACAAGATT+TGG | - | chr1.2:29350577-29350596 | MS.gene53612:intron | 35.0% | |
| GAAAAGGTGAGCGATTTATT+GGG | - | chr1.2:29351329-29351348 | MS.gene53612:intron | 35.0% | |
| GAACGATGAATTGAGAGAAA+GGG | - | chr1.2:29354551-29354570 | MS.gene53612:CDS | 35.0% | |
| GAGGAACATAATAGAAGAGT+AGG | - | chr1.2:29352229-29352248 | MS.gene53612:intron | 35.0% | |
| GCACAAGATATGATAGAGAT+AGG | - | chr1.2:29353916-29353935 | MS.gene53612:intron | 35.0% | |
| GCATAAGCTAAAAGTGGTAA+AGG | + | chr1.2:29352383-29352402 | None:intergenic | 35.0% | |
| GTGTGCATCAAACATGTAAT+AGG | + | chr1.2:29353998-29354017 | None:intergenic | 35.0% | |
| GTTTCCAAATCAAAGTGACA+CGG | + | chr1.2:29353352-29353371 | None:intergenic | 35.0% | |
| TAATCTGGTGGAATTGCAAA+CGG | + | chr1.2:29355739-29355758 | None:intergenic | 35.0% | |
| TAATGCAAACAAGAAACAGC+AGG | + | chr1.2:29352982-29353001 | None:intergenic | 35.0% | |
| TATCTAGTTAATGACCCCTA+TGG | - | chr1.2:29352735-29352754 | MS.gene53612:intron | 35.0% | |
| TCACTTGGCTGTTAAATTAG+GGG | - | chr1.2:29350284-29350303 | MS.gene53612:CDS | 35.0% | |
| TCCTGTTTCAATCTACTGTT+TGG | + | chr1.2:29354706-29354725 | None:intergenic | 35.0% | |
| TGAAAAGGTGAGCGATTTAT+TGG | - | chr1.2:29351328-29351347 | MS.gene53612:intron | 35.0% | |
| TGAACGATGAATTGAGAGAA+AGG | - | chr1.2:29354550-29354569 | MS.gene53612:CDS | 35.0% | |
| TGTTAAATTAGGGGATGAAG+TGG | - | chr1.2:29350293-29350312 | MS.gene53612:CDS | 35.0% | |
| TTAACAGGAAAAGTTCCCAT+TGG | + | chr1.2:29351653-29351672 | None:intergenic | 35.0% | |
| TTACCTAAGCTGTGTAATGT+GGG | - | chr1.2:29350159-29350178 | MS.gene53612:CDS | 35.0% | |
| TTAGGTAATAAGTGGAAGAG+TGG | + | chr1.2:29352928-29352947 | None:intergenic | 35.0% | |
| TTCTAACCCACCAAAAACTA+AGG | - | chr1.2:29354611-29354630 | MS.gene53612:CDS | 35.0% | |
| TTCTATTAATCATGCGGCAA+AGG | + | chr1.2:29353809-29353828 | None:intergenic | 35.0% | |
| TTCTCTTTGCGTAGATGAAA+AGG | - | chr1.2:29351313-29351332 | MS.gene53612:intron | 35.0% | |
| TTTACCTAAGCTGTGTAATG+TGG | - | chr1.2:29350158-29350177 | MS.gene53612:CDS | 35.0% | |
| TTTGCAACAATGTCAAGCAA+TGG | + | chr1.2:29351581-29351600 | None:intergenic | 35.0% | |
| ! | AAAATCACAGCCTTATGAAC+AGG | + | chr1.2:29350102-29350121 | None:intergenic | 35.0% |
| ! | AATGGGAACTTTTCCTGTTA+AGG | - | chr1.2:29351652-29351671 | MS.gene53612:intron | 35.0% |
| ! | ACCAATGTTTTATGGGTATG+CGG | - | chr1.2:29352435-29352454 | MS.gene53612:intron | 35.0% |
| ! | ACTGAACAATGATAGTGATG+AGG | - | chr1.2:29351127-29351146 | MS.gene53612:intron | 35.0% |
| ! | AGGAACGAGGTTTAATTTCA+AGG | + | chr1.2:29355225-29355244 | None:intergenic | 35.0% |
| ! | AGTGTTCTTTTTCTTGGTGA+TGG | - | chr1.2:29350675-29350694 | MS.gene53612:intron | 35.0% |
| ! | AGTTATGGAGGAAGAAGTAT+AGG | - | chr1.2:29354501-29354520 | MS.gene53612:CDS | 35.0% |
| ! | ATTTGGAACATGTGGGTAAA+AGG | - | chr1.2:29352008-29352027 | MS.gene53612:intron | 35.0% |
| ! | ATTTTCTATCCTACTACTGC+TGG | + | chr1.2:29355707-29355726 | None:intergenic | 35.0% |
| ! | CTGAACAATGATAGTGATGA+GGG | - | chr1.2:29351128-29351147 | MS.gene53612:intron | 35.0% |
| ! | CTTGTAGCACCAATGTTTTA+TGG | - | chr1.2:29352427-29352446 | MS.gene53612:intron | 35.0% |
| ! | GATGTATGTGAAGAGTATGA+TGG | + | chr1.2:29355109-29355128 | None:intergenic | 35.0% |
| ! | TCATAAGGCTGTGATTTTGA+AGG | - | chr1.2:29350104-29350123 | MS.gene53612:CDS | 35.0% |
| ! | TGAACAATGATAGTGATGAG+GGG | - | chr1.2:29351129-29351148 | MS.gene53612:intron | 35.0% |
| ! | TGGTGGACAAATGAATATTC+TGG | + | chr1.2:29352908-29352927 | None:intergenic | 35.0% |
| ! | TTTGGAACATGTGGGTAAAA+GGG | - | chr1.2:29352009-29352028 | MS.gene53612:intron | 35.0% |
| ! | TTTTGACCGAAGATGAAAGA+AGG | - | chr1.2:29351069-29351088 | MS.gene53612:intron | 35.0% |
| !! | AAAACATTGGTGCTACAAGT+TGG | + | chr1.2:29352426-29352445 | None:intergenic | 35.0% |
| !! | AAACATTGGTGCTACAAGTT+GGG | + | chr1.2:29352425-29352444 | None:intergenic | 35.0% |
| !! | ATAGGAATGTCTCTAAAGCT+TGG | + | chr1.2:29351170-29351189 | None:intergenic | 35.0% |
| !! | GCTGTGATTTTGAAGGATTA+TGG | - | chr1.2:29350111-29350130 | MS.gene53612:CDS | 35.0% |
| !! | TGCAATCTCCCATTTTGATA+AGG | + | chr1.2:29352685-29352704 | None:intergenic | 35.0% |
| !! | TTCGATTTTAGAGGAAGAGA+AGG | - | chr1.2:29350203-29350222 | MS.gene53612:CDS | 35.0% |
| AACCAAAAGTTGCGAGTGAA+TGG | - | chr1.2:29353250-29353269 | MS.gene53612:intron | 40.0% | |
| AAGCTAGCCCAAAGAATTGA+AGG | + | chr1.2:29355140-29355159 | None:intergenic | 40.0% | |
| AAGTGATTGTAGGGTGGAAT+CGG | - | chr1.2:29354434-29354453 | MS.gene53612:CDS | 40.0% | |
| AATCTGGTGGAATTGCAAAC+GGG | + | chr1.2:29355738-29355757 | None:intergenic | 40.0% | |
| AATTAAGCATTATCAGCCCC+TGG | - | chr1.2:29350428-29350447 | MS.gene53612:intron | 40.0% | |
| ACATATCAGGCATGTTTCGA+AGG | + | chr1.2:29355245-29355264 | None:intergenic | 40.0% | |
| ACCGCATACCCATAAAACAT+TGG | + | chr1.2:29352439-29352458 | None:intergenic | 40.0% | |
| AGATGAAAGAAGGCAATTGG+AGG | - | chr1.2:29351079-29351098 | MS.gene53612:intron | 40.0% | |
| AGCTAAAAGTGGTAAAGGTG+AGG | + | chr1.2:29352378-29352397 | None:intergenic | 40.0% | |
| AGGATTATGGTGAGCTTAAG+AGG | - | chr1.2:29350124-29350143 | MS.gene53612:CDS | 40.0% | |
| ATGCATGCTACAGCATAAGT+AGG | + | chr1.2:29351809-29351828 | None:intergenic | 40.0% | |
| ATTAAATCTTAGGCCCCGTT+TGG | + | chr1.2:29354769-29354788 | None:intergenic | 40.0% | |
| CAATCTCTGCTGTGATTGAT+AGG | - | chr1.2:29350232-29350251 | MS.gene53612:CDS | 40.0% | |
| CAGGAAAAGAAAGGATGGTT+TGG | - | chr1.2:29351227-29351246 | MS.gene53612:intron | 40.0% | |
| CAGGAGAAAACAGAAATGGT+AGG | - | chr1.2:29350906-29350925 | MS.gene53612:intron | 40.0% | |
| CATGATCTCACACAAGGAAA+AGG | - | chr1.2:29350734-29350753 | MS.gene53612:intron | 40.0% | |
| CCTGTGTCCTTCAATTCTTT+GGG | - | chr1.2:29355130-29355149 | MS.gene53612:CDS | 40.0% | |
| CGAAGATGAAAGAAGGCAAT+TGG | - | chr1.2:29351076-29351095 | MS.gene53612:intron | 40.0% | |
| CTACATCTACTTACCTTTCC+TGG | - | chr1.2:29353426-29353445 | MS.gene53612:intron | 40.0% | |
| CTACCGTTACCATCTTCAAT+AGG | + | chr1.2:29351188-29351207 | None:intergenic | 40.0% | |
| GAAGCTAATGAATCCAGGAA+AGG | + | chr1.2:29353442-29353461 | None:intergenic | 40.0% | |
| GCAAGAAATAGACAGAGAAG+AGG | - | chr1.2:29352039-29352058 | MS.gene53612:intron | 40.0% | |
| GCTGAAATGCTTATGGTTGT+TGG | - | chr1.2:29350318-29350337 | MS.gene53612:CDS | 40.0% | |
| GGAGTTTGCAGAATGAACAA+GGG | - | chr1.2:29350349-29350368 | MS.gene53612:CDS | 40.0% | |
| GGGATTGATGTTGCAAAGTT+TGG | - | chr1.2:29350069-29350088 | MS.gene53612:CDS | 40.0% | |
| GGTGCAATCCTTGAAATGAA+AGG | + | chr1.2:29350558-29350577 | None:intergenic | 40.0% | |
| GTGAGCTTAAGAGGATACTT+GGG | - | chr1.2:29350133-29350152 | MS.gene53612:CDS | 40.0% | |
| TAACAAAGGGTGAGTAGGAT+AGG | - | chr1.2:29354641-29354660 | MS.gene53612:CDS | 40.0% | |
| TAGAAGAGTAGGTGTGTTCT+CGG | - | chr1.2:29352240-29352259 | MS.gene53612:intron | 40.0% | |
| TATCCTTTCCTGTCCTTATC+CGG | + | chr1.2:29353955-29353974 | None:intergenic | 40.0% | |
| TCCTGTGTCCTTCAATTCTT+TGG | - | chr1.2:29355129-29355148 | MS.gene53612:CDS | 40.0% | |
| TCTACGCAAAGAGAACTTCT+TGG | + | chr1.2:29351308-29351327 | None:intergenic | 40.0% | |
| TCTTGCGCTGTTACTCATTA+AGG | - | chr1.2:29353460-29353479 | MS.gene53612:intron | 40.0% | |
| TGAAGAAGTTCAGCAAGAAG+TGG | - | chr1.2:29350800-29350819 | MS.gene53612:intron | 40.0% | |
| TGAGCTTAAGAGGATACTTG+GGG | - | chr1.2:29350134-29350153 | MS.gene53612:CDS | 40.0% | |
| TGCATGCTACAGCATAAGTA+GGG | + | chr1.2:29351808-29351827 | None:intergenic | 40.0% | |
| TGGAGTTTGCAGAATGAACA+AGG | - | chr1.2:29350348-29350367 | MS.gene53612:CDS | 40.0% | |
| TGGGTATGCGGTAAAATTAG+TGG | - | chr1.2:29352447-29352466 | MS.gene53612:intron | 40.0% | |
| TGGTCATAGTCCTGTTCATA+AGG | - | chr1.2:29350089-29350108 | MS.gene53612:CDS | 40.0% | |
| TTATGGTTGTTGGTGCAGAT+TGG | - | chr1.2:29350328-29350347 | MS.gene53612:CDS | 40.0% | |
| TTCCTATCATGTGCACCAAA+CGG | - | chr1.2:29354751-29354770 | MS.gene53612:CDS | 40.0% | |
| TTTGTTGGAAACAGTTGTCC+AGG | - | chr1.2:29355039-29355058 | MS.gene53612:CDS | 40.0% | |
| ! | AAGAAGTATAGGTCGATGGA+TGG | - | chr1.2:29354512-29354531 | MS.gene53612:CDS | 40.0% |
| ! | ATGGTGTTGAAGAGTTATGG+AGG | - | chr1.2:29354489-29354508 | MS.gene53612:CDS | 40.0% |
| ! | CAGGTTGGAGTTATACAAGA+AGG | + | chr1.2:29354315-29354334 | None:intergenic | 40.0% |
| ! | CCTATGGATTTGGAACATGT+GGG | - | chr1.2:29352001-29352020 | MS.gene53612:intron | 40.0% |
| ! | CTACCATTTCTGTTTTCTCC+TGG | + | chr1.2:29350908-29350927 | None:intergenic | 40.0% |
| ! | GAAAAGAAAGGATGGTTTGG+TGG | - | chr1.2:29351230-29351249 | MS.gene53612:intron | 40.0% |
| ! | GAAACAGGTTGGAATTACAC+AGG | + | chr1.2:29354334-29354353 | None:intergenic | 40.0% |
| ! | GAGATGGTGTTGAAGAGTTA+TGG | - | chr1.2:29354486-29354505 | MS.gene53612:CDS | 40.0% |
| ! | GAGGATGAGGGACTTTTATA+TGG | - | chr1.2:29350500-29350519 | MS.gene53612:intron | 40.0% |
| ! | TTCCATTCACTCGCAACTTT+TGG | + | chr1.2:29353255-29353274 | None:intergenic | 40.0% |
| ! | TTCTTTTGCCTCAGTTGACT+TGG | - | chr1.2:29350877-29350896 | MS.gene53612:intron | 40.0% |
| !! | CTCTAAAATCGAAACCGCTT+CGG | + | chr1.2:29350196-29350215 | None:intergenic | 40.0% |
| !! | TGAAGAGGAGTATCACGATT+CGG | + | chr1.2:29350267-29350286 | None:intergenic | 40.0% |
| !! | TTCAATTCTTTGGGCTAGCT+TGG | - | chr1.2:29355139-29355158 | MS.gene53612:CDS | 40.0% |
| !!! | CACAGGATTGCCATCTTTTT+TGG | - | chr1.2:29355362-29355381 | MS.gene53612:CDS | 40.0% |
| !!! | CACTCGCAACTTTTGGTTTT+CGG | + | chr1.2:29353248-29353267 | None:intergenic | 40.0% |
| !!! | GGAGGGTTTTAAAACATCAC+AGG | - | chr1.2:29355345-29355364 | MS.gene53612:CDS | 40.0% |
| AAACCGGATAAGGACAGGAA+AGG | - | chr1.2:29353949-29353968 | MS.gene53612:intron | 45.0% | |
| AAGGGTTGAGGCCTATTCTT+TGG | - | chr1.2:29351516-29351535 | MS.gene53612:intron | 45.0% | |
| AATACCACTAGGCCAACCTA+TGG | + | chr1.2:29352099-29352118 | None:intergenic | 45.0% | |
| ACGCAAAGAGAACTTCTTGG+TGG | + | chr1.2:29351305-29351324 | None:intergenic | 45.0% | |
| ACTCTGCATGATCTCACACA+AGG | - | chr1.2:29350728-29350747 | MS.gene53612:intron | 45.0% | |
| AGAAGAGTAGGTGTGTTCTC+GGG | - | chr1.2:29352241-29352260 | MS.gene53612:intron | 45.0% | |
| AGCAGAAGTCGTCATAAGGA+CGG | - | chr1.2:29351470-29351489 | MS.gene53612:intron | 45.0% | |
| AGTGACCAATACTCTGATGG+TGG | + | chr1.2:29355521-29355540 | None:intergenic | 45.0% | |
| AGTGATTGTAGGGTGGAATC+GGG | - | chr1.2:29354435-29354454 | MS.gene53612:CDS | 45.0% | |
| AGTGGCTGCTGAAATGCTTA+TGG | - | chr1.2:29350311-29350330 | MS.gene53612:CDS | 45.0% | |
| ATACCACTAGGCCAACCTAT+GGG | + | chr1.2:29352098-29352117 | None:intergenic | 45.0% | |
| ATAGACAGAGAAGAGGGGTA+AGG | - | chr1.2:29352046-29352065 | MS.gene53612:intron | 45.0% | |
| ATATAGGCTAACGGTCCGTT+TGG | - | chr1.2:29353892-29353911 | MS.gene53612:intron | 45.0% | |
| ATTCTGTTGAGGTTGTTGCG+AGG | - | chr1.2:29351390-29351409 | MS.gene53612:intron | 45.0% | |
| ATTGGAGGATGCACTTAAGC+TGG | - | chr1.2:29351094-29351113 | MS.gene53612:intron | 45.0% | |
| CAGAGAAATTTGTCGCTGCA+GGG | + | chr1.2:29355624-29355643 | None:intergenic | 45.0% | |
| CCCAAAGAATTGAAGGACAC+AGG | + | chr1.2:29355133-29355152 | None:intergenic | 45.0% | |
| CCCACATGTTCCAAATCCAT+AGG | + | chr1.2:29352004-29352023 | None:intergenic | 45.0% | |
| CGAAACATGCCTGATATGTG+TGG | - | chr1.2:29355246-29355265 | MS.gene53612:CDS | 45.0% | |
| CGCAAGAAGCTAATGAATCC+AGG | + | chr1.2:29353447-29353466 | None:intergenic | 45.0% | |
| CTATGAGGAAACCCATAGGT+TGG | - | chr1.2:29352084-29352103 | MS.gene53612:intron | 45.0% | |
| CTGCTTCATCTTGGTTTCAG+TGG | - | chr1.2:29355641-29355660 | MS.gene53612:CDS | 45.0% | |
| CTTGGGCAAAATGGTGTAGA+AGG | - | chr1.2:29350451-29350470 | MS.gene53612:intron | 45.0% | |
| GAGCAAGCACTAACCTTAAC+AGG | + | chr1.2:29351668-29351687 | None:intergenic | 45.0% | |
| GAGCTTAAGAGGATACTTGG+GGG | - | chr1.2:29350135-29350154 | MS.gene53612:CDS | 45.0% | |
| GATCTCACACAAGGAAAAGG+AGG | - | chr1.2:29350737-29350756 | MS.gene53612:intron | 45.0% | |
| GCAGTGACCCAAGTATAATC+TGG | + | chr1.2:29355754-29355773 | None:intergenic | 45.0% | |
| GCCTGAGTAACATCAATACC+AGG | + | chr1.2:29350855-29350874 | None:intergenic | 45.0% | |
| GGGTAGTAAAGAGCTAGCAA+GGG | + | chr1.2:29352405-29352424 | None:intergenic | 45.0% | |
| GGTAATAAGTGGAAGAGTGG+TGG | + | chr1.2:29352925-29352944 | None:intergenic | 45.0% | |
| GGTAGGATCTTGGAAAGCTA+AGG | - | chr1.2:29350923-29350942 | MS.gene53612:intron | 45.0% | |
| GGTGAGCTTAAGAGGATACT+TGG | - | chr1.2:29350132-29350151 | MS.gene53612:CDS | 45.0% | |
| GTGACCAATACTCTGATGGT+GGG | + | chr1.2:29355520-29355539 | None:intergenic | 45.0% | |
| GTGACCCAAGTATAATCTGG+TGG | + | chr1.2:29355751-29355770 | None:intergenic | 45.0% | |
| GTTTGCAGAATGAACAAGGG+TGG | - | chr1.2:29350352-29350371 | MS.gene53612:CDS | 45.0% | |
| TACACATTGGTACTCTGGCA+AGG | + | chr1.2:29353374-29353393 | None:intergenic | 45.0% | |
| TAGACAGAGAAGAGGGGTAA+GGG | - | chr1.2:29352047-29352066 | MS.gene53612:intron | 45.0% | |
| TAGCAGCAGAAGTCGTCATA+AGG | - | chr1.2:29351466-29351485 | MS.gene53612:intron | 45.0% | |
| TCACCCACATTACACAGCTT+AGG | + | chr1.2:29350165-29350184 | None:intergenic | 45.0% | |
| TCCTATCATGTGCACCAAAC+GGG | - | chr1.2:29354752-29354771 | MS.gene53612:CDS | 45.0% | |
| TCGTGATACTCCTCTTCACT+TGG | - | chr1.2:29350269-29350288 | MS.gene53612:CDS | 45.0% | |
| TCTAAGGGCTGACATGACTT+TGG | - | chr1.2:29350614-29350633 | MS.gene53612:intron | 45.0% | |
| TGAGATCATGCAGAGTGATC+CGG | + | chr1.2:29350724-29350743 | None:intergenic | 45.0% | |
| TGAGTAAGCAGTCAGCACAA+AGG | + | chr1.2:29352715-29352734 | None:intergenic | 45.0% | |
| TGGGTAGTAAAGAGCTAGCA+AGG | + | chr1.2:29352406-29352425 | None:intergenic | 45.0% | |
| TTATGGAGCAAGAGGAGTAG+TGG | + | chr1.2:29352855-29352874 | None:intergenic | 45.0% | |
| TTCGGCGAAAGCCAAAGAAT+AGG | + | chr1.2:29351530-29351549 | None:intergenic | 45.0% | |
| TTCTGTTGAGGTTGTTGCGA+GGG | - | chr1.2:29351391-29351410 | MS.gene53612:intron | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | - | chr1.2:29352164-29352183 | MS.gene53612:intron | 45.0% |
| ! | CAGGTTGGAATTACACAGGT+TGG | + | chr1.2:29354330-29354349 | None:intergenic | 45.0% |
| ! | CATGTGTTGGCCTATGGATT+TGG | - | chr1.2:29351991-29352010 | MS.gene53612:intron | 45.0% |
| ! | CGAAGCGGTTTCGATTTTAG+AGG | - | chr1.2:29350194-29350213 | MS.gene53612:CDS | 45.0% |
| ! | GAAAAGGGGTGCGAATCTAA+GGG | - | chr1.2:29350599-29350618 | MS.gene53612:intron | 45.0% |
| ! | GAGGAAGAAGTATAGGTCGA+TGG | - | chr1.2:29354508-29354527 | MS.gene53612:CDS | 45.0% |
| ! | GCAAGGGCATAAGCTAAAAG+TGG | + | chr1.2:29352389-29352408 | None:intergenic | 45.0% |
| ! | GCCTATGGATTTGGAACATG+TGG | - | chr1.2:29352000-29352019 | MS.gene53612:intron | 45.0% |
| ! | GGTGTCGCGAATTCATCTAA+TGG | + | chr1.2:29355568-29355587 | None:intergenic | 45.0% |
| ! | TAACGTGTCGATGTTGTGTC+TGG | + | chr1.2:29351855-29351874 | None:intergenic | 45.0% |
| !! | AGAAAGGATGGTTTGGTGGA+TGG | - | chr1.2:29351234-29351253 | MS.gene53612:intron | 45.0% |
| !! | ATAGGTTGGCCTAGTGGTAT+TGG | - | chr1.2:29352098-29352117 | MS.gene53612:intron | 45.0% |
| !! | ATGACTTTGGCTGGTTTCGA+CGG | - | chr1.2:29350627-29350646 | MS.gene53612:intron | 45.0% |
| !! | CTTGGTGATGGTTCAGAAGA+TGG | - | chr1.2:29350687-29350706 | MS.gene53612:intron | 45.0% |
| !! | GATGGTAACGGTAGCATTAG+TGG | - | chr1.2:29351194-29351213 | MS.gene53612:intron | 45.0% |
| !! | GCATATTCAGGTTGCCATTC+CGG | - | chr1.2:29355489-29355508 | MS.gene53612:CDS | 45.0% |
| !! | GCCTGGTATTGATGTTACTC+AGG | - | chr1.2:29350851-29350870 | MS.gene53612:intron | 45.0% |
| !! | GTCTCCGTGTCACTTTGATT+TGG | - | chr1.2:29353345-29353364 | MS.gene53612:intron | 45.0% |
| !! | TTGGGCTAGCTTGGTCTTAT+TGG | - | chr1.2:29355148-29355167 | MS.gene53612:CDS | 45.0% |
| !!! | TCTAGACGATGCTGCTTTTG+CGG | - | chr1.2:29350770-29350789 | MS.gene53612:intron | 45.0% |
| !!! | TTTTGCCTCAGTTGACTTGG+AGG | - | chr1.2:29350880-29350899 | MS.gene53612:intron | 45.0% |
| !! | TTGAATTAAAAAAAAAAATA+CGG | - | chr1.2:29354249-29354268 | MS.gene53612:CDS | 5.0% |
| !!! | TTTAAAATAAATACATTTTA+AGG | + | chr1.2:29355202-29355221 | None:intergenic | 5.0% |
| AACCTGCCGCAGATGAACTA+GGG | + | chr1.2:29355684-29355703 | None:intergenic | 50.0% | |
| ACCAGGGAGACATTCTGTTG+AGG | - | chr1.2:29351379-29351398 | MS.gene53612:intron | 50.0% | |
| ACCTCAACAGAATGTCTCCC+TGG | + | chr1.2:29351383-29351402 | None:intergenic | 50.0% | |
| AGACGGCACCCCTAAGAAAA+AGG | + | chr1.2:29354186-29354205 | None:intergenic | 50.0% | |
| AGGCATGTTTCGAAGGAACG+AGG | + | chr1.2:29355238-29355257 | None:intergenic | 50.0% | |
| ATACCGCCCTAGTTCATCTG+CGG | - | chr1.2:29355675-29355694 | MS.gene53612:CDS | 50.0% | |
| ATCTCTTCGCCTGACATGGA+TGG | + | chr1.2:29355601-29355620 | None:intergenic | 50.0% | |
| CCTATCATGTGCACCAAACG+GGG | - | chr1.2:29354753-29354772 | MS.gene53612:CDS | 50.0% | |
| GAAGATGGTAAAGTCCAGCC+CGG | - | chr1.2:29350702-29350721 | MS.gene53612:intron | 50.0% | |
| GAATCGAACCTGAGACCTCA+AGG | + | chr1.2:29352148-29352167 | None:intergenic | 50.0% | |
| GAGATCATGCAGAGTGATCC+GGG | + | chr1.2:29350723-29350742 | None:intergenic | 50.0% | |
| GATCCCAAGCCAATACCACT+AGG | + | chr1.2:29352110-29352129 | None:intergenic | 50.0% | |
| GCAGAGAAATTTGTCGCTGC+AGG | + | chr1.2:29355625-29355644 | None:intergenic | 50.0% | |
| GCGCCAGGAGAAAACAGAAA+TGG | - | chr1.2:29350902-29350921 | MS.gene53612:intron | 50.0% | |
| GGGTGAGATTTGTACCGAAG+CGG | - | chr1.2:29350179-29350198 | MS.gene53612:CDS | 50.0% | |
| GGTGCACATGATAGGAAGAC+AGG | + | chr1.2:29354748-29354767 | None:intergenic | 50.0% | |
| GGTTCCCACCATCAGAGTAT+TGG | - | chr1.2:29355513-29355532 | MS.gene53612:CDS | 50.0% | |
| GTAAGCAGTCAGCACAAAGG+AGG | + | chr1.2:29352712-29352731 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | - | chr1.2:29352152-29352171 | MS.gene53612:intron | 50.0% | |
| GTGATTGTAGGGTGGAATCG+GGG | - | chr1.2:29354436-29354455 | MS.gene53612:CDS | 50.0% | |
| GTGTAGAAGGTTGCCTCGTT+TGG | - | chr1.2:29350464-29350483 | MS.gene53612:intron | 50.0% | |
| GTTGTGTCTGGTAACCATGC+TGG | + | chr1.2:29351843-29351862 | None:intergenic | 50.0% | |
| TAGCCCACCTAAATTGGCAC+CGG | + | chr1.2:29352174-29352193 | None:intergenic | 50.0% | |
| TCATCGTCTGTCATAGCTCC+AGG | + | chr1.2:29350996-29351015 | None:intergenic | 50.0% | |
| TCTGTTGAGGTTGTTGCGAG+GGG | - | chr1.2:29351392-29351411 | MS.gene53612:intron | 50.0% | |
| ! | ACACCATTTTGCCCAAGCCA+GGG | + | chr1.2:29350448-29350467 | None:intergenic | 50.0% |
| ! | ACCCCCTTAATCTAGAGCGT+CGG | - | chr1.2:29351949-29351968 | MS.gene53612:intron | 50.0% |
| ! | ACCGACGCTCTAGATTAAGG+GGG | + | chr1.2:29351953-29351972 | None:intergenic | 50.0% |
| ! | CACCGACGCTCTAGATTAAG+GGG | + | chr1.2:29351954-29351973 | None:intergenic | 50.0% |
| ! | CCTGACATGGATGGACTTGT+CGG | + | chr1.2:29355592-29355611 | None:intergenic | 50.0% |
| ! | GCACCGACGCTCTAGATTAA+GGG | + | chr1.2:29351955-29351974 | None:intergenic | 50.0% |
| ! | GCATGTCATGTGTTGGCCTA+TGG | - | chr1.2:29351985-29352004 | MS.gene53612:intron | 50.0% |
| ! | GGAAAAGGGGTGCGAATCTA+AGG | - | chr1.2:29350598-29350617 | MS.gene53612:intron | 50.0% |
| ! | TACACCATTTTGCCCAAGCC+AGG | + | chr1.2:29350449-29350468 | None:intergenic | 50.0% |
| ! | TCTCCGGTGCCAATTTAGGT+GGG | - | chr1.2:29352168-29352187 | MS.gene53612:intron | 50.0% |
| !! | AAACCCATAGGTTGGCCTAG+TGG | - | chr1.2:29352092-29352111 | MS.gene53612:intron | 50.0% |
| !! | AGCACCGACGCTCTAGATTA+AGG | + | chr1.2:29351956-29351975 | None:intergenic | 50.0% |
| !! | AGTGGTATTGGCTTGGGATC+TGG | - | chr1.2:29352110-29352129 | MS.gene53612:intron | 50.0% |
| !! | CTACTGTTTGGTGCGCCAAT+AGG | + | chr1.2:29354694-29354713 | None:intergenic | 50.0% |
| !! | GTGGTATTGGCTTGGGATCT+GGG | - | chr1.2:29352111-29352130 | MS.gene53612:intron | 50.0% |
| !! | GTTTGGTGCGCCAATAGGAA+AGG | + | chr1.2:29354689-29354708 | None:intergenic | 50.0% |
| !! | TATTCAGGTTGCCATTCCGG+TGG | - | chr1.2:29355492-29355511 | MS.gene53612:CDS | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | - | chr1.2:29352104-29352123 | MS.gene53612:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | - | chr1.2:29352103-29352122 | MS.gene53612:intron | 50.0% |
| AGCATTATCAGCCCCTGGCT+TGG | - | chr1.2:29350433-29350452 | MS.gene53612:intron | 55.0% | |
| AGGGATCTCTTCGCCTGACA+TGG | + | chr1.2:29355605-29355624 | None:intergenic | 55.0% | |
| AGGGCTGACATGACTTTGGC+TGG | - | chr1.2:29350618-29350637 | MS.gene53612:intron | 55.0% | |
| CCGACAAGTCCATCCATGTC+AGG | - | chr1.2:29355589-29355608 | MS.gene53612:CDS | 55.0% | |
| GAACCTGCCGCAGATGAACT+AGG | + | chr1.2:29355685-29355704 | None:intergenic | 55.0% | |
| GCAGATGAACTAGGGCGGTA+TGG | + | chr1.2:29355676-29355695 | None:intergenic | 55.0% | |
| GCATTATCAGCCCCTGGCTT+GGG | - | chr1.2:29350434-29350453 | MS.gene53612:intron | 55.0% | |
| GGTGGAATTGCAAACGGGTC+TGG | + | chr1.2:29355733-29355752 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTCAAGG+AGG | + | chr1.2:29352145-29352164 | None:intergenic | 55.0% | |
| ! | CACCATTTTGCCCAAGCCAG+GGG | + | chr1.2:29350447-29350466 | None:intergenic | 55.0% |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | - | chr1.2:29352167-29352186 | MS.gene53612:intron | 55.0% |
| ! | GACATGGATGGACTTGTCGG+CGG | + | chr1.2:29355589-29355608 | None:intergenic | 55.0% |
| !! | ACTCTGATGGTGGGAACCAC+CGG | + | chr1.2:29355511-29355530 | None:intergenic | 55.0% |
| !! | CCCCGTTTGGTGCACATGAT+AGG | + | chr1.2:29354756-29354775 | None:intergenic | 55.0% |
| !! | CTCGTTTGGTAGCGACGATG+CGG | - | chr1.2:29350478-29350497 | MS.gene53612:intron | 55.0% |
| AGCGACGATGCGGAGGATGA+GGG | - | chr1.2:29350488-29350507 | MS.gene53612:intron | 60.0% | |
| CGCATCGTCGCTACCAAACG+AGG | + | chr1.2:29350480-29350499 | None:intergenic | 60.0% | |
| CGGCAGGTTCCAGCAGTAGT+AGG | - | chr1.2:29355695-29355714 | MS.gene53612:CDS | 60.0% | |
| CTGCCGCAGATGAACTAGGG+CGG | + | chr1.2:29355681-29355700 | None:intergenic | 60.0% | |
| GTGCTCCTCCTTGAGGTCTC+AGG | - | chr1.2:29352137-29352156 | MS.gene53612:intron | 60.0% | |
| TAGCGACGATGCGGAGGATG+AGG | - | chr1.2:29350487-29350506 | MS.gene53612:intron | 60.0% | |
| TCATGCAGAGTGATCCGGGC+TGG | + | chr1.2:29350719-29350738 | None:intergenic | 60.0% | |
| TGGCGCCTCCAAGTCAACTG+AGG | + | chr1.2:29350888-29350907 | None:intergenic | 60.0% | |
| TTGCGAGGGGCGATGAGCAA+CGG | - | chr1.2:29351405-29351424 | MS.gene53612:intron | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr1.2:29352130-29352149 | MS.gene53612:intron | 60.0% |
| !! | AGCCCCTGGCTTGGGCAAAA+TGG | - | chr1.2:29350442-29350461 | MS.gene53612:intron | 60.0% |
| !! | GATGGTGGGAACCACCGGAA+TGG | + | chr1.2:29355506-29355525 | None:intergenic | 60.0% |
| !! | GTTTGGTAGCGACGATGCGG+AGG | - | chr1.2:29350481-29350500 | MS.gene53612:intron | 60.0% |
| !! | TCAGTTGACTTGGAGGCGCC+AGG | - | chr1.2:29350887-29350906 | MS.gene53612:intron | 60.0% |
| CGCCCTAGTTCATCTGCGGC+AGG | - | chr1.2:29355679-29355698 | MS.gene53612:CDS | 65.0% | |
| CGAGGGGCGATGAGCAACGG+AGG | - | chr1.2:29351408-29351427 | MS.gene53612:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 29350063 | 29355840 | 29350063 | ID=MS.gene53612 |
| chr1.2 | mRNA | 29350063 | 29355840 | 29350063 | ID=MS.gene53612.t1;Parent=MS.gene53612 |
| chr1.2 | exon | 29354230 | 29355840 | 29354230 | ID=MS.gene53612.t1.exon1;Parent=MS.gene53612.t1 |
| chr1.2 | CDS | 29354230 | 29355840 | 29354230 | ID=cds.MS.gene53612.t1;Parent=MS.gene53612.t1 |
| chr1.2 | exon | 29350063 | 29350404 | 29350063 | ID=MS.gene53612.t1.exon2;Parent=MS.gene53612.t1 |
| chr1.2 | CDS | 29350063 | 29350404 | 29350063 | ID=cds.MS.gene53612.t1;Parent=MS.gene53612.t1 |
| Gene Sequence |
| Protein sequence |
