Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53391.t1 | XP_003629763.2 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.80E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53391.t1 | Q96452 | 85.3 | 259 | 26 | 2 | 1 | 248 | 1 | 258 | 1.5e-114 | 413.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53391.t1 | G7LIR4 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.3e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene53391 | 0.849474 | 3.16E-60 | -1.69E-46 |
| MS.gene04919 | MS.gene53391 | 0.824792 | 6.66E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene53391 | 0.854405 | 1.26E-61 | -1.69E-46 |
| MS.gene049254 | MS.gene53391 | 0.817301 | 3.54E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene53391 | 0.870389 | 1.51E-66 | -1.69E-46 |
| MS.gene049419 | MS.gene53391 | -0.806205 | 9.21E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene53391 | 0.833341 | 5.64E-56 | -1.69E-46 |
| MS.gene049653 | MS.gene53391 | 0.816291 | 5.97E-52 | -1.69E-46 |
| MS.gene049680 | MS.gene53391 | 0.844879 | 5.75E-59 | -1.69E-46 |
| MS.gene049983 | MS.gene53391 | 0.85305 | 3.09E-61 | -1.69E-46 |
| MS.gene050559 | MS.gene53391 | 0.827145 | 1.84E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene53391 | 0.815565 | 8.66E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene53391 | 0.806728 | 7.15E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene53391 | 0.81492 | 1.20E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene53391 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene53391 | 0.828721 | 7.68E-55 | -1.69E-46 |
| MS.gene050752 | MS.gene53391 | 0.80275 | 4.84E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene53391 | 0.847329 | 1.24E-59 | -1.69E-46 |
| MS.gene050955 | MS.gene53391 | 0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene53391 | 0.841524 | 4.51E-58 | -1.69E-46 |
| MS.gene051154 | MS.gene53391 | 0.824361 | 8.41E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene53391 | 0.806984 | 6.31E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene53391 | 0.835418 | 1.70E-56 | -1.69E-46 |
| MS.gene051363 | MS.gene53391 | 0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene53391 | 0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene051637 | MS.gene53391 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene051699 | MS.gene53391 | 0.838108 | 3.50E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene53391 | 0.803615 | 3.20E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene53391 | 0.836315 | 1.01E-56 | -1.69E-46 |
| MS.gene052072 | MS.gene53391 | 0.830114 | 3.52E-55 | -1.69E-46 |
| MS.gene052108 | MS.gene53391 | 0.828833 | 7.22E-55 | -1.69E-46 |
| MS.gene052500 | MS.gene53391 | 0.820077 | 8.30E-53 | -1.69E-46 |
| MS.gene052502 | MS.gene53391 | 0.810343 | 1.21E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene53391 | 0.851971 | 6.27E-61 | -1.69E-46 |
| MS.gene052793 | MS.gene53391 | 0.805141 | 1.54E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene53391 | 0.814184 | 1.75E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene53391 | 0.845979 | 2.90E-59 | -1.69E-46 |
| MS.gene053006 | MS.gene53391 | 0.851638 | 7.79E-61 | -1.69E-46 |
| MS.gene053058 | MS.gene53391 | 0.822399 | 2.42E-53 | -1.69E-46 |
| MS.gene053228 | MS.gene53391 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene53391 | -0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene053575 | MS.gene53391 | 0.815525 | 8.84E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene53391 | 0.812264 | 4.63E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene53391 | 0.851089 | 1.11E-60 | -1.69E-46 |
| MS.gene053931 | MS.gene53391 | 0.858461 | 8.11E-63 | -1.69E-46 |
| MS.gene053963 | MS.gene53391 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene054004 | MS.gene53391 | 0.83932 | 1.70E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene53391 | 0.807173 | 5.75E-50 | -1.69E-46 |
| MS.gene054413 | MS.gene53391 | 0.822789 | 1.96E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene53391 | 0.825662 | 4.15E-54 | -1.69E-46 |
| MS.gene054892 | MS.gene53391 | 0.828651 | 7.99E-55 | -1.69E-46 |
| MS.gene054893 | MS.gene53391 | 0.836947 | 6.94E-57 | -1.69E-46 |
| MS.gene054957 | MS.gene53391 | 0.843788 | 1.13E-58 | -1.69E-46 |
| MS.gene055150 | MS.gene53391 | 0.871823 | 5.09E-67 | -1.69E-46 |
| MS.gene05517 | MS.gene53391 | 0.814976 | 1.17E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene53391 | 0.820021 | 8.55E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene53391 | 0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene53391 | 0.858374 | 8.61E-63 | -1.69E-46 |
| MS.gene056071 | MS.gene53391 | 0.83353 | 5.06E-56 | -1.69E-46 |
| MS.gene056363 | MS.gene53391 | 0.803706 | 3.07E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene53391 | 0.852311 | 5.02E-61 | -1.69E-46 |
| MS.gene056776 | MS.gene53391 | 0.80601 | 1.01E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene53391 | 0.842463 | 2.55E-58 | -1.69E-46 |
| MS.gene05689 | MS.gene53391 | 0.801076 | 1.07E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene53391 | 0.839254 | 1.77E-57 | -1.69E-46 |
| MS.gene057034 | MS.gene53391 | 0.816172 | 6.34E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene53391 | 0.845409 | 4.13E-59 | -1.69E-46 |
| MS.gene057155 | MS.gene53391 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene53391 | 0.875734 | 2.44E-68 | -1.69E-46 |
| MS.gene057392 | MS.gene53391 | 0.854999 | 8.47E-62 | -1.69E-46 |
| MS.gene057622 | MS.gene53391 | 0.844257 | 8.46E-59 | -1.69E-46 |
| MS.gene057705 | MS.gene53391 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene53391 | 0.832124 | 1.13E-55 | -1.69E-46 |
| MS.gene058008 | MS.gene53391 | 0.850374 | 1.77E-60 | -1.69E-46 |
| MS.gene058009 | MS.gene53391 | 0.841281 | 5.23E-58 | -1.69E-46 |
| MS.gene058095 | MS.gene53391 | 0.825815 | 3.82E-54 | -1.69E-46 |
| MS.gene058126 | MS.gene53391 | 0.805003 | 1.65E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene53391 | 0.825267 | 5.15E-54 | -1.69E-46 |
| MS.gene058292 | MS.gene53391 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene058592 | MS.gene53391 | 0.833764 | 4.42E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene53391 | 0.868147 | 8.10E-66 | -1.69E-46 |
| MS.gene058783 | MS.gene53391 | 0.8595 | 3.96E-63 | -1.69E-46 |
| MS.gene05878 | MS.gene53391 | 0.838718 | 2.43E-57 | -1.69E-46 |
| MS.gene058979 | MS.gene53391 | 0.801214 | 1.00E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene53391 | 0.873782 | 1.13E-67 | -1.69E-46 |
| MS.gene059436 | MS.gene53391 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene53391 | 0.870146 | 1.82E-66 | -1.69E-46 |
| MS.gene05956 | MS.gene53391 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene53391 | -0.871629 | 5.91E-67 | -1.69E-46 |
| MS.gene059901 | MS.gene53391 | -0.848447 | 6.09E-60 | -1.69E-46 |
| MS.gene060244 | MS.gene53391 | 0.867297 | 1.52E-65 | -1.69E-46 |
| MS.gene060259 | MS.gene53391 | 0.801894 | 7.26E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene53391 | 0.813763 | 2.17E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene53391 | 0.815244 | 1.02E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene53391 | 0.835667 | 1.47E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene53391 | 0.895772 | 6.97E-76 | -1.69E-46 |
| MS.gene060937 | MS.gene53391 | 0.891867 | 2.68E-74 | -1.69E-46 |
| MS.gene061100 | MS.gene53391 | 0.809569 | 1.77E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene53391 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene061243 | MS.gene53391 | 0.815177 | 1.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53391.t1 | MTR_8g086270 | 94.595 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.48e-179 | 493 |
| MS.gene53391.t1 | MTR_2g091225 | 80.078 | 256 | 40 | 1 | 1 | 245 | 1 | 256 | 2.33e-155 | 432 |
| MS.gene53391.t1 | MTR_2g015980 | 80.159 | 252 | 39 | 2 | 8 | 248 | 6 | 257 | 1.23e-147 | 412 |
| MS.gene53391.t1 | MTR_2g076960 | 77.165 | 254 | 46 | 2 | 2 | 244 | 3 | 255 | 2.39e-143 | 402 |
| MS.gene53391.t1 | MTR_2g091225 | 78.448 | 232 | 39 | 1 | 25 | 245 | 2 | 233 | 1.26e-137 | 386 |
| MS.gene53391.t1 | MTR_4g083060 | 76.305 | 249 | 48 | 1 | 1 | 238 | 1 | 249 | 1.17e-136 | 386 |
| MS.gene53391.t1 | MTR_5g044160 | 75.102 | 245 | 50 | 1 | 1 | 234 | 1 | 245 | 3.58e-134 | 379 |
| MS.gene53391.t1 | MTR_5g064580 | 69.136 | 243 | 62 | 2 | 7 | 236 | 8 | 250 | 3.30e-118 | 338 |
| MS.gene53391.t1 | MTR_3g099380 | 68.952 | 248 | 64 | 3 | 2 | 236 | 3 | 250 | 2.98e-117 | 336 |
| MS.gene53391.t1 | MTR_3g100620 | 62.241 | 241 | 77 | 2 | 7 | 233 | 11 | 251 | 5.32e-105 | 304 |
| MS.gene53391.t1 | MTR_3g099380 | 64.677 | 201 | 58 | 2 | 2 | 189 | 3 | 203 | 4.89e-87 | 257 |
| MS.gene53391.t1 | MTR_0137s0020 | 50.207 | 241 | 103 | 4 | 7 | 233 | 11 | 248 | 2.15e-69 | 214 |
| MS.gene53391.t1 | MTR_3g014060 | 48.988 | 247 | 109 | 4 | 1 | 233 | 5 | 248 | 2.36e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53391.t1 | AT2G42590 | 75.096 | 261 | 52 | 2 | 1 | 248 | 1 | 261 | 2.03e-143 | 402 |
| MS.gene53391.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.32e-141 | 397 |
| MS.gene53391.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.36e-141 | 398 |
| MS.gene53391.t1 | AT1G26480 | 74.590 | 244 | 51 | 1 | 2 | 234 | 5 | 248 | 6.28e-135 | 381 |
| MS.gene53391.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.51e-127 | 361 |
| MS.gene53391.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.62e-127 | 361 |
| MS.gene53391.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.25e-125 | 356 |
| MS.gene53391.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.26e-125 | 356 |
| MS.gene53391.t1 | AT1G22300 | 75.105 | 237 | 48 | 1 | 6 | 231 | 4 | 240 | 6.93e-125 | 355 |
| MS.gene53391.t1 | AT1G35160 | 68.145 | 248 | 66 | 2 | 2 | 236 | 6 | 253 | 2.00e-118 | 339 |
| MS.gene53391.t1 | AT1G78300 | 69.136 | 243 | 62 | 3 | 7 | 236 | 5 | 247 | 5.70e-118 | 337 |
| MS.gene53391.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
| MS.gene53391.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
| MS.gene53391.t1 | AT1G35160 | 69.874 | 239 | 59 | 3 | 2 | 227 | 6 | 244 | 1.08e-116 | 335 |
| MS.gene53391.t1 | AT5G38480 | 68.775 | 253 | 65 | 4 | 7 | 246 | 4 | 255 | 1.30e-116 | 334 |
| MS.gene53391.t1 | AT4G09000 | 67.769 | 242 | 65 | 3 | 2 | 230 | 5 | 246 | 2.72e-116 | 333 |
| MS.gene53391.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
| MS.gene53391.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
| MS.gene53391.t1 | AT4G09000 | 68.201 | 239 | 63 | 3 | 2 | 227 | 5 | 243 | 3.19e-114 | 330 |
| MS.gene53391.t1 | AT5G65430 | 65.992 | 247 | 70 | 2 | 1 | 233 | 1 | 247 | 3.55e-114 | 327 |
| MS.gene53391.t1 | AT5G10450 | 65.182 | 247 | 72 | 2 | 1 | 233 | 1 | 247 | 2.02e-113 | 325 |
| MS.gene53391.t1 | AT5G65430 | 65.984 | 244 | 69 | 2 | 1 | 230 | 1 | 244 | 9.85e-113 | 324 |
| MS.gene53391.t1 | AT5G10450 | 65.164 | 244 | 71 | 2 | 1 | 230 | 1 | 244 | 3.87e-112 | 322 |
| MS.gene53391.t1 | AT5G65430 | 66.390 | 241 | 67 | 2 | 1 | 227 | 1 | 241 | 1.04e-111 | 322 |
| MS.gene53391.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 2.40e-111 | 321 |
| MS.gene53391.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 7.31e-111 | 320 |
| MS.gene53391.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
| MS.gene53391.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
| MS.gene53391.t1 | AT1G78220 | 51.293 | 232 | 101 | 1 | 6 | 225 | 4 | 235 | 6.62e-80 | 240 |
| MS.gene53391.t1 | AT1G22290 | 49.758 | 207 | 83 | 5 | 6 | 203 | 4 | 198 | 9.98e-56 | 178 |
| MS.gene53391.t1 | AT1G22290 | 49.510 | 204 | 82 | 5 | 6 | 200 | 4 | 195 | 1.92e-55 | 176 |
| MS.gene53391.t1 | AT2G10450 | 61.702 | 47 | 17 | 1 | 193 | 238 | 16 | 62 | 3.56e-11 | 58.2 |
Find 66 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATTATGCAGCTTCTA+AGG | 0.184591 | 4.1:+13978623 | MS.gene53391:CDS |
| AGGGGATTATTATCGGTATT+TGG | 0.213214 | 4.1:+13977214 | MS.gene53391:intron |
| CAATAATATGCATACCTTTC+AGG | 0.215945 | 4.1:-13978449 | None:intergenic |
| TAATGATTACCTCCATCTTC+AGG | 0.273259 | 4.1:-13978676 | None:intergenic |
| CATGATATCACTGCATATAT+TGG | 0.293412 | 4.1:-13977120 | None:intergenic |
| AGAACGTAGTGGGTGCTCAT+AGG | 0.371672 | 4.1:+13976988 | MS.gene53391:CDS |
| TGGGTGCTCATAGGGCTTCA+TGG | 0.373885 | 4.1:+13976997 | MS.gene53391:CDS |
| GCATCCCATTCGATTGGGTT+TGG | 0.375573 | 4.1:+13978385 | MS.gene53391:CDS |
| GAACAAAAGGTGGAATCTTC+AGG | 0.377055 | 4.1:+13979595 | MS.gene53391:CDS |
| TCATTCCATGGAAGCATATC+AGG | 0.381388 | 4.1:+13977277 | MS.gene53391:CDS |
| AAATGAAAGGGGATTATTAT+CGG | 0.396472 | 4.1:+13977207 | MS.gene53391:intron |
| TCTTGTAGCCAACTGATAGA+AGG | 0.402262 | 4.1:-13976968 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.412085 | 4.1:-13976581 | None:intergenic |
| TCTATCCTCAATTGAGCATA+AGG | 0.430983 | 4.1:+13977025 | MS.gene53391:CDS |
| CCAACGCATCCCATTCGATT+GGG | 0.436518 | 4.1:+13978380 | MS.gene53391:CDS |
| TTTAACAGATGAGGAACAAA+AGG | 0.436649 | 4.1:+13979582 | MS.gene53391:intron |
| GGCATGTCACCTTGCTAAGC+AGG | 0.441855 | 4.1:+13978540 | MS.gene53391:CDS |
| TTCTTCCTTATGCTCAATTG+AGG | 0.450139 | 4.1:-13977030 | None:intergenic |
| CCCTTCTGCTGCAGTGGAAG+CGG | 0.455549 | 4.1:-13978348 | None:intergenic |
| AATGATTACCTCCATCTTCA+GGG | 0.461652 | 4.1:-13978675 | None:intergenic |
| GAACGTAGTGGGTGCTCATA+GGG | 0.465330 | 4.1:+13976989 | MS.gene53391:CDS |
| CCCAATCGAATGGGATGCGT+TGG | 0.472611 | 4.1:-13978380 | None:intergenic |
| CTTATTCCATCGTCCTCTGC+TGG | 0.475641 | 4.1:+13977161 | MS.gene53391:CDS |
| AGCATAAGGAAGAATCTAAA+GGG | 0.479531 | 4.1:+13977039 | MS.gene53391:CDS |
| CGCTTCCACTGCAGCAGAAG+GGG | 0.482864 | 4.1:+13978349 | MS.gene53391:CDS |
| GAGCATAAGGAAGAATCTAA+AGG | 0.492100 | 4.1:+13977038 | MS.gene53391:CDS |
| GTGGAATCTTCAGGAGCTGT+TGG | 0.492385 | 4.1:+13979604 | MS.gene53391:CDS |
| ACCGCTTCCACTGCAGCAGA+AGG | 0.492609 | 4.1:+13978347 | MS.gene53391:CDS |
| AATCGAATGGGATGCGTTGG+AGG | 0.498321 | 4.1:-13978377 | None:intergenic |
| ACGTTCCTTGGTGGAAGCCA+TGG | 0.499863 | 4.1:-13976539 | None:intergenic |
| TATTTGGCGGAATTTAAGAA+TGG | 0.505553 | 4.1:+13977230 | MS.gene53391:CDS |
| TGTGAATGTGAAGAGGATAA+AGG | 0.513152 | 4.1:+13977067 | MS.gene53391:CDS |
| TCCAACGCATCCCATTCGAT+TGG | 0.513679 | 4.1:+13978379 | MS.gene53391:CDS |
| ACTTCTGACATCCCTGAAGA+TGG | 0.519635 | 4.1:+13978664 | MS.gene53391:CDS |
| TAACTCCCCTTCTGCTGCAG+TGG | 0.529859 | 4.1:-13978354 | None:intergenic |
| GAGAGAAACCTTCTATCAGT+TGG | 0.536428 | 4.1:+13976960 | MS.gene53391:CDS |
| TGATGAAGCAATCTCCGAGT+TGG | 0.540762 | 4.1:+13978567 | MS.gene53391:CDS |
| AAAGCCAAACCCAATCGAAT+GGG | 0.542021 | 4.1:-13978389 | None:intergenic |
| CAAAGCCAAACCCAATCGAA+TGG | 0.549011 | 4.1:-13978390 | None:intergenic |
| ATTGATTATGCAGCTTCTAA+GGG | 0.556365 | 4.1:+13978624 | MS.gene53391:CDS |
| CATCAAATGCCTGCTTAGCA+AGG | 0.556866 | 4.1:-13978549 | None:intergenic |
| GAATCTTCAGGAGCTGTTGG+AGG | 0.564663 | 4.1:+13979607 | MS.gene53391:CDS |
| CCGCTTCCACTGCAGCAGAA+GGG | 0.566148 | 4.1:+13978348 | MS.gene53391:CDS |
| GAACAAGCTGAACGCTATGA+AGG | 0.567764 | 4.1:+13976592 | MS.gene53391:CDS |
| AACAGATGAGGAACAAAAGG+TGG | 0.567855 | 4.1:+13979585 | MS.gene53391:intron |
| GCAGACCTGATATGCTTCCA+TGG | 0.579067 | 4.1:-13977282 | None:intergenic |
| GGATTATTATCGGTATTTGG+CGG | 0.591213 | 4.1:+13977217 | MS.gene53391:CDS |
| AGAGGCTGCTGATCATTCCA+TGG | 0.596075 | 4.1:+13977265 | MS.gene53391:CDS |
| GACACTAGATTCACCAGCAG+AGG | 0.596973 | 4.1:-13977174 | None:intergenic |
| GAATGGTGATGAGCGAAAAG+AGG | 0.603840 | 4.1:+13977247 | MS.gene53391:CDS |
| GTTGGCTACAAGAACGTAGT+GGG | 0.620992 | 4.1:+13976978 | MS.gene53391:CDS |
| TGTCAGAAGTCCACAATGTG+AGG | 0.623979 | 4.1:-13978651 | None:intergenic |
| GATTCACCAGCAGAGGACGA+TGG | 0.625143 | 4.1:-13977167 | None:intergenic |
| AATTTCCATGGCTTCCACCA+AGG | 0.626045 | 4.1:+13976534 | None:intergenic |
| TGTTGGAGGTGAAAATGCAT+AGG | 0.631634 | 4.1:+13979621 | MS.gene53391:CDS |
| CGAGTTGGATACTCTGAGTG+AGG | 0.651430 | 4.1:+13978582 | MS.gene53391:CDS |
| TAAGGGACAACCTCACATTG+TGG | 0.657719 | 4.1:+13978641 | MS.gene53391:CDS |
| TCTGACATCCCTGAAGATGG+AGG | 0.665639 | 4.1:+13978667 | MS.gene53391:CDS |
| AGTTGGCTACAAGAACGTAG+TGG | 0.666503 | 4.1:+13976977 | MS.gene53391:CDS |
| CTCACTCAGAGTATCCAACT+CGG | 0.668173 | 4.1:-13978581 | None:intergenic |
| GCTAGATGTTGAGTTGACAG+TGG | 0.686884 | 4.1:+13976935 | MS.gene53391:CDS |
| GGAATGATGTGAATGTGAAG+AGG | 0.689723 | 4.1:+13977060 | MS.gene53391:CDS |
| AAAGGAGTATAGACACAAGG+TGG | 0.694713 | 4.1:+13977085 | MS.gene53391:CDS |
| GTGCTCATAGGGCTTCATGG+AGG | 0.700802 | 4.1:+13977000 | MS.gene53391:CDS |
| GATAAAGGAGTATAGACACA+AGG | 0.704247 | 4.1:+13977082 | MS.gene53391:CDS |
| GGTGGAAGCAATGAAGAATG+TGG | 0.728314 | 4.1:+13976908 | MS.gene53391:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATAAAAATAAATGATT+CGG | - | chr4.1:13978767-13978786 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTGATAGAATTA+AGG | + | chr4.1:13978775-13978794 | MS.gene53391:intron | 10.0% |
| !! | AATCATCATAAAAAAAATCA+AGG | - | chr4.1:13976751-13976770 | None:intergenic | 15.0% |
| !! | ATCATCATAAAAAAAATCAA+GGG | - | chr4.1:13976750-13976769 | None:intergenic | 15.0% |
| !! | ATTGATTAAGAAATTGAAAT+TGG | + | chr4.1:13976814-13976833 | MS.gene53391:intron | 15.0% |
| !! | TAGTTATAGGATAAATATAA+AGG | - | chr4.1:13978173-13978192 | None:intergenic | 15.0% |
| !! | TTGATTAAGAAATTGAAATT+GGG | + | chr4.1:13976815-13976834 | MS.gene53391:intron | 15.0% |
| !!! | AAAAATTGATTTTGGATAAA+AGG | - | chr4.1:13977931-13977950 | None:intergenic | 15.0% |
| !!! | TAAAATCAATTTTATGTGTT+TGG | - | chr4.1:13977788-13977807 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTATAAAATGAAA+GGG | + | chr4.1:13977195-13977214 | MS.gene53391:intron | 15.0% |
| !!! | TTTTTTAAATATTATGGAAG+AGG | + | chr4.1:13979346-13979365 | MS.gene53391:intron | 15.0% |
| !! | AAAAATGGAAGTAAAGAAAA+TGG | - | chr4.1:13976633-13976652 | None:intergenic | 20.0% |
| !! | AAAATGGAAGTAAAGAAAAT+GGG | - | chr4.1:13976632-13976651 | None:intergenic | 20.0% |
| !! | AAATTATAAAGAAAATAGCC+AGG | - | chr4.1:13979532-13979551 | None:intergenic | 20.0% |
| !! | ACTCTTAAATCTGTATATAT+AGG | - | chr4.1:13976691-13976710 | None:intergenic | 20.0% |
| !! | ATAGAATTAAGGATGAAAAT+AGG | + | chr4.1:13978786-13978805 | MS.gene53391:intron | 20.0% |
| !! | ATGAGTTAAAAAATCTTGTT+TGG | - | chr4.1:13977894-13977913 | None:intergenic | 20.0% |
| !! | TATCTGTATTTACTTTAAGT+AGG | - | chr4.1:13978962-13978981 | None:intergenic | 20.0% |
| !! | TCATCATAAAAAAAATCAAG+GGG | - | chr4.1:13976749-13976768 | None:intergenic | 20.0% |
| !! | TTAAATATGTGAAAAACTGA+TGG | - | chr4.1:13979081-13979100 | None:intergenic | 20.0% |
| !! | TTATGAATTATCAGATTAAC+AGG | - | chr4.1:13978318-13978337 | None:intergenic | 20.0% |
| !!! | AGAATTGATTTTGAAATGTT+TGG | + | chr4.1:13977533-13977552 | MS.gene53391:intron | 20.0% |
| !!! | CTTTTTCTATAAAATGAAAG+GGG | + | chr4.1:13977196-13977215 | MS.gene53391:intron | 20.0% |
| !!! | GTCTTTTTCTATAAAATGAA+AGG | + | chr4.1:13977194-13977213 | MS.gene53391:intron | 20.0% |
| !!! | TCAGTTTTTCACATATTTAA+AGG | + | chr4.1:13979081-13979100 | MS.gene53391:intron | 20.0% |
| !!! | TGAACTTTAAGAGAAAAAAA+TGG | - | chr4.1:13976648-13976667 | None:intergenic | 20.0% |
| !!! | TTGAAATTTTCATTGTGTTT+TGG | + | chr4.1:13976790-13976809 | MS.gene53391:intron | 20.0% |
| !!! | TTGATTTTGTATTCAGAATT+TGG | + | chr4.1:13977570-13977589 | MS.gene53391:intron | 20.0% |
| ! | AAAATATGAGTAAAGTTGAC+AGG | - | chr4.1:13979494-13979513 | None:intergenic | 25.0% |
| ! | AAATGAAAGGGGATTATTAT+CGG | + | chr4.1:13977207-13977226 | MS.gene53391:intron | 25.0% |
| ! | AATAAGTACATAAGAAACTG+AGG | - | chr4.1:13979294-13979313 | None:intergenic | 25.0% |
| ! | AATATCTTATCAGAGATCAT+AGG | - | chr4.1:13978196-13978215 | None:intergenic | 25.0% |
| ! | AGTTAAAAGCTACAGATAAT+AGG | - | chr4.1:13977871-13977890 | None:intergenic | 25.0% |
| ! | ATGATACGTTAATGTAAAAG+TGG | - | chr4.1:13977644-13977663 | None:intergenic | 25.0% |
| ! | TATATCTTTGCGGTTTAAAA+TGG | + | chr4.1:13977322-13977341 | MS.gene53391:intron | 25.0% |
| !! | AAAAAAAGTATGTTCTAGCT+TGG | - | chr4.1:13978845-13978864 | None:intergenic | 25.0% |
| !! | ATAAAGTCAGATTTTCTAGA+AGG | + | chr4.1:13979129-13979148 | MS.gene53391:intron | 25.0% |
| !! | ATGCAATTTGTTTATGTAAC+TGG | + | chr4.1:13979221-13979240 | MS.gene53391:intron | 25.0% |
| !! | CAGAACTTTTTATATCTTTG+CGG | + | chr4.1:13977312-13977331 | MS.gene53391:intron | 25.0% |
| !! | GTTGTATACTTTTACTGTTT+TGG | + | chr4.1:13976874-13976893 | MS.gene53391:intron | 25.0% |
| !! | TTAGATTTTGTACTTTGTCT+TGG | + | chr4.1:13979009-13979028 | MS.gene53391:intron | 25.0% |
| !!! | AAAAAAGTATGTTCTAGCTT+GGG | - | chr4.1:13978844-13978863 | None:intergenic | 25.0% |
| !!! | ATGATTTGTAGTTCATTTTG+TGG | + | chr4.1:13978045-13978064 | MS.gene53391:intron | 25.0% |
| !!! | ATTTGATTTTGAACACGTTA+AGG | - | chr4.1:13979270-13979289 | None:intergenic | 25.0% |
| !!! | GGAGATAAAATTGATTTTAG+AGG | + | chr4.1:13977507-13977526 | MS.gene53391:intron | 25.0% |
| AAACATCAAGCTTAGAACAT+TGG | - | chr4.1:13976716-13976735 | None:intergenic | 30.0% | |
| AATATGTGAAAAACTGATGG+AGG | - | chr4.1:13979078-13979097 | None:intergenic | 30.0% | |
| AGCATAAGGAAGAATCTAAA+GGG | + | chr4.1:13977039-13977058 | MS.gene53391:CDS | 30.0% | |
| ATGTCTATCTTAACTGAAGA+TGG | + | chr4.1:13977416-13977435 | MS.gene53391:intron | 30.0% | |
| ATTATCAGATTAACAGGACT+TGG | - | chr4.1:13978312-13978331 | None:intergenic | 30.0% | |
| ATTGATTATGCAGCTTCTAA+GGG | + | chr4.1:13978624-13978643 | MS.gene53391:CDS | 30.0% | |
| CAATAATATGCATACCTTTC+AGG | - | chr4.1:13978452-13978471 | None:intergenic | 30.0% | |
| CATGATATCACTGCATATAT+TGG | - | chr4.1:13977123-13977142 | None:intergenic | 30.0% | |
| TAAACAGATCGCTTAATTGT+TGG | - | chr4.1:13979444-13979463 | None:intergenic | 30.0% | |
| TAGTGAATTAAAGAAGCGAA+GGG | - | chr4.1:13977459-13977478 | None:intergenic | 30.0% | |
| TATTTGGCGGAATTTAAGAA+TGG | + | chr4.1:13977230-13977249 | MS.gene53391:CDS | 30.0% | |
| TGAAAAGCTTGACAAGTTTA+TGG | - | chr4.1:13979036-13979055 | None:intergenic | 30.0% | |
| TGCAACACTTATTTGAATGA+AGG | + | chr4.1:13978230-13978249 | MS.gene53391:intron | 30.0% | |
| TGGATTGAACAATGAATTCA+AGG | - | chr4.1:13977624-13977643 | None:intergenic | 30.0% | |
| TGTATTTACTTTAAGTAGGC+CGG | - | chr4.1:13978958-13978977 | None:intergenic | 30.0% | |
| TGTTTCATGTAGAGAAGAAA+AGG | + | chr4.1:13978108-13978127 | MS.gene53391:intron | 30.0% | |
| TTTAACAGATGAGGAACAAA+AGG | + | chr4.1:13979582-13979601 | MS.gene53391:intron | 30.0% | |
| TTTGTTTATGTAACTGGTAG+TGG | + | chr4.1:13979227-13979246 | MS.gene53391:intron | 30.0% | |
| ! | AAATTTTGAACTCTCCTGAA+AGG | + | chr4.1:13978435-13978454 | MS.gene53391:CDS | 30.0% |
| ! | AATAGACACACTTGATTTTG+CGG | - | chr4.1:13977958-13977977 | None:intergenic | 30.0% |
| !! | AAAAAGTATGTTCTAGCTTG+GGG | - | chr4.1:13978843-13978862 | None:intergenic | 30.0% |
| !! | GTCTAGTCTTATAGCTAAAT+AGG | - | chr4.1:13978901-13978920 | None:intergenic | 30.0% |
| !! | TATGTGTTTGGAATCACTTT+TGG | - | chr4.1:13977776-13977795 | None:intergenic | 30.0% |
| !! | TTCTTTTCTAGTATGTTAGC+TGG | + | chr4.1:13978712-13978731 | MS.gene53391:intron | 30.0% |
| !! | TTTGCTGTTATTTCAAAACC+TGG | + | chr4.1:13979511-13979530 | MS.gene53391:intron | 30.0% |
| !!! | ACTGTTTTGGTTGATAGAAA+TGG | + | chr4.1:13976887-13976906 | MS.gene53391:intron | 30.0% |
| AAACATATCACCGAAGTTTC+AGG | - | chr4.1:13978496-13978515 | None:intergenic | 35.0% | |
| AATGATTACCTCCATCTTCA+GGG | - | chr4.1:13978678-13978697 | None:intergenic | 35.0% | |
| ACACACATGATAACCATCAT+AGG | - | chr4.1:13977368-13977387 | None:intergenic | 35.0% | |
| AGGGGATTATTATCGGTATT+TGG | + | chr4.1:13977214-13977233 | MS.gene53391:intron | 35.0% | |
| ATATCACCTATGACAAGTAC+CGG | - | chr4.1:13977987-13978006 | None:intergenic | 35.0% | |
| ATGACACTCCTCATATTTCA+GGG | + | chr4.1:13978519-13978538 | MS.gene53391:intron | 35.0% | |
| CAGAGATCATAGGTAGTTAT+AGG | - | chr4.1:13978186-13978205 | None:intergenic | 35.0% | |
| CCTCATCTGTTAAAAAAACG+AGG | - | chr4.1:13979576-13979595 | None:intergenic | 35.0% | |
| CTAGTGAATTAAAGAAGCGA+AGG | - | chr4.1:13977460-13977479 | None:intergenic | 35.0% | |
| GAGCATAAGGAAGAATCTAA+AGG | + | chr4.1:13977038-13977057 | MS.gene53391:CDS | 35.0% | |
| GGATTATTATCGGTATTTGG+CGG | + | chr4.1:13977217-13977236 | MS.gene53391:CDS | 35.0% | |
| GGCTACCAAAAAATCCATTT+GGG | + | chr4.1:13978925-13978944 | MS.gene53391:intron | 35.0% | |
| TAATGATTACCTCCATCTTC+AGG | - | chr4.1:13978679-13978698 | None:intergenic | 35.0% | |
| TAGCTATAAGACTAGACTTC+TGG | + | chr4.1:13978904-13978923 | MS.gene53391:intron | 35.0% | |
| TCTATCCTCAATTGAGCATA+AGG | + | chr4.1:13977025-13977044 | MS.gene53391:CDS | 35.0% | |
| TGGCTACCAAAAAATCCATT+TGG | + | chr4.1:13978924-13978943 | MS.gene53391:intron | 35.0% | |
| TGTGAATGTGAAGAGGATAA+AGG | + | chr4.1:13977067-13977086 | MS.gene53391:CDS | 35.0% | |
| TTCCTACAGCATAGAAAATC+TGG | - | chr4.1:13979191-13979210 | None:intergenic | 35.0% | |
| TTCTTCCTTATGCTCAATTG+AGG | - | chr4.1:13977033-13977052 | None:intergenic | 35.0% | |
| TTTGAACTCTCCTGAAACTT+CGG | + | chr4.1:13978483-13978502 | MS.gene53391:intron | 35.0% | |
| ! | CATTGATTATGCAGCTTCTA+AGG | + | chr4.1:13978623-13978642 | MS.gene53391:CDS | 35.0% |
| ! | GATAAAGGAGTATAGACACA+AGG | + | chr4.1:13977082-13977101 | MS.gene53391:CDS | 35.0% |
| ! | GTTCTAAGCTTGATGTTTCT+TGG | + | chr4.1:13976718-13976737 | MS.gene53391:intron | 35.0% |
| ! | GTTTTCTTTTCTGCCTATGA+TGG | + | chr4.1:13977352-13977371 | MS.gene53391:intron | 35.0% |
| ! | TGTATGCTTGGTTTCACTTT+TGG | + | chr4.1:13977483-13977502 | MS.gene53391:intron | 35.0% |
| !! | AAGAAAATGGGTTAGAGAGA+AGG | - | chr4.1:13976620-13976639 | None:intergenic | 35.0% |
| !! | ATTCACTAGTCTTGTATGCT+TGG | + | chr4.1:13977471-13977490 | MS.gene53391:intron | 35.0% |
| !! | CAGTTTTGACATTTTCGTCA+TGG | + | chr4.1:13979465-13979484 | MS.gene53391:intron | 35.0% |
| !! | GCGGTGACAAAAATTGATTT+TGG | - | chr4.1:13977939-13977958 | None:intergenic | 35.0% |
| !!! | CCTCGTTTTTTTAACAGATG+AGG | + | chr4.1:13979573-13979592 | MS.gene53391:intron | 35.0% |
| !!! | GTTTTGGTTGATAGAAATGG+TGG | + | chr4.1:13976890-13976909 | MS.gene53391:intron | 35.0% |
| AAAATCCATGAACAAGCGAG+GGG | + | chr4.1:13979394-13979413 | MS.gene53391:intron | 40.0% | |
| AAAGCCAAACCCAATCGAAT+GGG | - | chr4.1:13978392-13978411 | None:intergenic | 40.0% | |
| AAATAGGTCAAACCAACCGA+CGG | + | chr4.1:13978802-13978821 | MS.gene53391:intron | 40.0% | |
| AACAGATGAGGAACAAAAGG+TGG | + | chr4.1:13979585-13979604 | MS.gene53391:intron | 40.0% | |
| ATCAGATTAACAGGACTTGG+CGG | - | chr4.1:13978309-13978328 | None:intergenic | 40.0% | |
| ATGTAGAGAAGAAAAGGAGC+GGG | + | chr4.1:13978114-13978133 | MS.gene53391:intron | 40.0% | |
| CAAAATCCATGAACAAGCGA+GGG | + | chr4.1:13979393-13979412 | MS.gene53391:intron | 40.0% | |
| CATAGGTGATATGAGCTTTG+AGG | + | chr4.1:13977995-13978014 | MS.gene53391:intron | 40.0% | |
| CATGACACTCCTCATATTTC+AGG | + | chr4.1:13978518-13978537 | MS.gene53391:intron | 40.0% | |
| CATGTAGAGAAGAAAAGGAG+CGG | + | chr4.1:13978113-13978132 | MS.gene53391:intron | 40.0% | |
| CTACAGCATAGAAAATCTGG+TGG | - | chr4.1:13979188-13979207 | None:intergenic | 40.0% | |
| GAACAAAAGGTGGAATCTTC+AGG | + | chr4.1:13979595-13979614 | MS.gene53391:CDS | 40.0% | |
| GAGAGAAACCTTCTATCAGT+TGG | + | chr4.1:13976960-13976979 | MS.gene53391:CDS | 40.0% | |
| GGAATGATGTGAATGTGAAG+AGG | + | chr4.1:13977060-13977079 | MS.gene53391:CDS | 40.0% | |
| TCAAAATCCATGAACAAGCG+AGG | + | chr4.1:13979392-13979411 | MS.gene53391:intron | 40.0% | |
| TCTTGTAGCCAACTGATAGA+AGG | - | chr4.1:13976971-13976990 | None:intergenic | 40.0% | |
| TGGATATGTAGTTGCTTGCT+TGG | + | chr4.1:13977392-13977411 | MS.gene53391:intron | 40.0% | |
| TGGTTATCATGTGTGTTGTG+TGG | + | chr4.1:13977372-13977391 | MS.gene53391:intron | 40.0% | |
| TTTGTCACCTCAGAACCAAA+CGG | + | chr4.1:13977739-13977758 | MS.gene53391:intron | 40.0% | |
| ! | AAAGGAGTATAGACACAAGG+TGG | + | chr4.1:13977085-13977104 | MS.gene53391:CDS | 40.0% |
| ! | ACTTGTTAGGTAGGAGAAAG+TGG | + | chr4.1:13978018-13978037 | MS.gene53391:intron | 40.0% |
| ! | CACCAGATTTTCTATGCTGT+AGG | + | chr4.1:13979186-13979205 | MS.gene53391:intron | 40.0% |
| ! | GACTCGATCTGAAATGTGAA+TGG | + | chr4.1:13978734-13978753 | MS.gene53391:intron | 40.0% |
| ! | TCATTCCATGGAAGCATATC+AGG | + | chr4.1:13977277-13977296 | MS.gene53391:CDS | 40.0% |
| !! | AAGTGTGTCTATTTCTGAGC+CGG | + | chr4.1:13977965-13977984 | MS.gene53391:intron | 40.0% |
| !! | ATGAGCTTTGAGGACTTGTT+AGG | + | chr4.1:13978005-13978024 | MS.gene53391:intron | 40.0% |
| !! | ATGCTTGGTTTCACTTTTGG+AGG | + | chr4.1:13977486-13977505 | MS.gene53391:intron | 40.0% |
| !!! | TGAGGCCCAAATGGATTTTT+TGG | - | chr4.1:13978933-13978952 | None:intergenic | 40.0% |
| AAAAGGAGCGGGAAGATAAG+AGG | + | chr4.1:13978125-13978144 | MS.gene53391:intron | 45.0% | |
| AAAGGAGCGGGAAGATAAGA+GGG | + | chr4.1:13978126-13978145 | MS.gene53391:intron | 45.0% | |
| AATAGGTCAAACCAACCGAC+GGG | + | chr4.1:13978803-13978822 | MS.gene53391:intron | 45.0% | |
| ACCTCAGAACCAAACGGTTT+AGG | + | chr4.1:13977745-13977764 | MS.gene53391:intron | 45.0% | |
| ACTTCTGACATCCCTGAAGA+TGG | + | chr4.1:13978664-13978683 | MS.gene53391:CDS | 45.0% | |
| AGTTGGCTACAAGAACGTAG+TGG | + | chr4.1:13976977-13976996 | MS.gene53391:CDS | 45.0% | |
| CAAAGCCAAACCCAATCGAA+TGG | - | chr4.1:13978393-13978412 | None:intergenic | 45.0% | |
| CATCAAATGCCTGCTTAGCA+AGG | - | chr4.1:13978552-13978571 | None:intergenic | 45.0% | |
| CTCAACAGCCAACTTCACAT+TGG | - | chr4.1:13978262-13978281 | None:intergenic | 45.0% | |
| GAACAAGCTGAACGCTATGA+AGG | + | chr4.1:13976592-13976611 | MS.gene53391:CDS | 45.0% | |
| GGCATCAACCAATGTGAAGT+TGG | + | chr4.1:13978251-13978270 | MS.gene53391:intron | 45.0% | |
| GGTGGAAGCAATGAAGAATG+TGG | + | chr4.1:13976908-13976927 | MS.gene53391:CDS | 45.0% | |
| GTGACATGCCCTGAAATATG+AGG | - | chr4.1:13978530-13978549 | None:intergenic | 45.0% | |
| GTTGGCTACAAGAACGTAGT+GGG | + | chr4.1:13976978-13976997 | MS.gene53391:CDS | 45.0% | |
| TAAGGGACAACCTCACATTG+TGG | + | chr4.1:13978641-13978660 | MS.gene53391:CDS | 45.0% | |
| TGATGAAGCAATCTCCGAGT+TGG | + | chr4.1:13978567-13978586 | MS.gene53391:CDS | 45.0% | |
| TGTCAGAAGTCCACAATGTG+AGG | - | chr4.1:13978654-13978673 | None:intergenic | 45.0% | |
| TGTGAAAAACTGATGGAGGC+TGG | - | chr4.1:13979074-13979093 | None:intergenic | 45.0% | |
| ! | CTCACTCAGAGTATCCAACT+CGG | - | chr4.1:13978584-13978603 | None:intergenic | 45.0% |
| ! | GAAGTTTTCACGTTCCTTGG+TGG | - | chr4.1:13976551-13976570 | None:intergenic | 45.0% |
| ! | GAATGGTGATGAGCGAAAAG+AGG | + | chr4.1:13977247-13977266 | MS.gene53391:CDS | 45.0% |
| ! | GACGAAGTTTTCACGTTCCT+TGG | - | chr4.1:13976554-13976573 | None:intergenic | 45.0% |
| ! | TTGGCTCTTCCTAAACCGTT+TGG | - | chr4.1:13977757-13977776 | None:intergenic | 45.0% |
| !! | AGTATGTTCTAGCTTGGGGT+AGG | - | chr4.1:13978839-13978858 | None:intergenic | 45.0% |
| !! | GCTAGATGTTGAGTTGACAG+TGG | + | chr4.1:13976935-13976954 | MS.gene53391:CDS | 45.0% |
| !! | GCTTTGAGGACTTGTTAGGT+AGG | + | chr4.1:13978009-13978028 | MS.gene53391:intron | 45.0% |
| !! | GTATGTTCTAGCTTGGGGTA+GGG | - | chr4.1:13978838-13978857 | None:intergenic | 45.0% |
| !! | TCCTAAACCGTTTGGTTCTG+AGG | - | chr4.1:13977749-13977768 | None:intergenic | 45.0% |
| !!! | AAAACATTTTTTAAATATTA+TGG | + | chr4.1:13979340-13979359 | MS.gene53391:intron | 5.0% |
| AAGGAGCGGGAAGATAAGAG+GGG | + | chr4.1:13978127-13978146 | MS.gene53391:intron | 50.0% | |
| AATCCATTTGGGCCTCAGAC+CGG | + | chr4.1:13978936-13978955 | MS.gene53391:intron | 50.0% | |
| AATCGAATGGGATGCGTTGG+AGG | - | chr4.1:13978380-13978399 | None:intergenic | 50.0% | |
| ACTTTAAGTAGGCCGGTCTG+AGG | - | chr4.1:13978951-13978970 | None:intergenic | 50.0% | |
| AGAGGCTGCTGATCATTCCA+TGG | + | chr4.1:13977265-13977284 | MS.gene53391:CDS | 50.0% | |
| CCAACGCATCCCATTCGATT+GGG | + | chr4.1:13978380-13978399 | MS.gene53391:CDS | 50.0% | |
| CTTATTCCATCGTCCTCTGC+TGG | + | chr4.1:13977161-13977180 | MS.gene53391:CDS | 50.0% | |
| GAATCTTCAGGAGCTGTTGG+AGG | + | chr4.1:13979607-13979626 | MS.gene53391:CDS | 50.0% | |
| GACACTAGATTCACCAGCAG+AGG | - | chr4.1:13977177-13977196 | None:intergenic | 50.0% | |
| GCAGACCTGATATGCTTCCA+TGG | - | chr4.1:13977285-13977304 | None:intergenic | 50.0% | |
| GCATCCCATTCGATTGGGTT+TGG | + | chr4.1:13978385-13978404 | MS.gene53391:CDS | 50.0% | |
| GTGGAATCTTCAGGAGCTGT+TGG | + | chr4.1:13979604-13979623 | MS.gene53391:CDS | 50.0% | |
| TCCAACGCATCCCATTCGAT+TGG | + | chr4.1:13978379-13978398 | MS.gene53391:CDS | 50.0% | |
| TCTGACATCCCTGAAGATGG+AGG | + | chr4.1:13978667-13978686 | MS.gene53391:CDS | 50.0% | |
| TCTGAGCCGGTACTTGTCAT+AGG | + | chr4.1:13977978-13977997 | MS.gene53391:intron | 50.0% | |
| ! | CGAGTTGGATACTCTGAGTG+AGG | + | chr4.1:13978582-13978601 | MS.gene53391:CDS | 50.0% |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | - | chr4.1:13976584-13976603 | None:intergenic | 50.0% |
| !! | AGAACGTAGTGGGTGCTCAT+AGG | + | chr4.1:13976988-13977007 | MS.gene53391:CDS | 50.0% |
| !! | GAACGTAGTGGGTGCTCATA+GGG | + | chr4.1:13976989-13977008 | MS.gene53391:CDS | 50.0% |
| AGGAGCGGGAAGATAAGAGG+GGG | + | chr4.1:13978128-13978147 | MS.gene53391:intron | 55.0% | |
| CCCAATCGAATGGGATGCGT+TGG | - | chr4.1:13978383-13978402 | None:intergenic | 55.0% | |
| GAATGCCCCTCGCTTGTTCA+TGG | - | chr4.1:13979402-13979421 | None:intergenic | 55.0% | |
| GATTCACCAGCAGAGGACGA+TGG | - | chr4.1:13977170-13977189 | None:intergenic | 55.0% | |
| GGCATGTCACCTTGCTAAGC+AGG | + | chr4.1:13978540-13978559 | MS.gene53391:CDS | 55.0% | |
| GTGCTCATAGGGCTTCATGG+AGG | + | chr4.1:13977000-13977019 | MS.gene53391:CDS | 55.0% | |
| TAACTCCCCTTCTGCTGCAG+TGG | - | chr4.1:13978357-13978376 | None:intergenic | 55.0% | |
| TGGGTGCTCATAGGGCTTCA+TGG | + | chr4.1:13976997-13977016 | MS.gene53391:CDS | 55.0% | |
| AACCAACCGACGGGAGCCAA+TGG | + | chr4.1:13978812-13978831 | MS.gene53391:intron | 60.0% | |
| ACCGCTTCCACTGCAGCAGA+AGG | + | chr4.1:13978347-13978366 | MS.gene53391:CDS | 60.0% | |
| CCCTTCTGCTGCAGTGGAAG+CGG | - | chr4.1:13978351-13978370 | None:intergenic | 60.0% | |
| CCGCTTCCACTGCAGCAGAA+GGG | + | chr4.1:13978348-13978367 | MS.gene53391:CDS | 60.0% | |
| CGCTTCCACTGCAGCAGAAG+GGG | + | chr4.1:13978349-13978368 | MS.gene53391:CDS | 60.0% | |
| CTAGCTTGGGGTAGGGCCAT+TGG | - | chr4.1:13978831-13978850 | None:intergenic | 60.0% | |
| ! | AGGCCGGTCTGAGGCCCAAA+TGG | - | chr4.1:13978942-13978961 | None:intergenic | 65.0% |
| !! | GTAGGGCCATTGGCTCCCGT+CGG | - | chr4.1:13978821-13978840 | None:intergenic | 65.0% |
| !! | GGCCATTGGCTCCCGTCGGT+TGG | - | chr4.1:13978817-13978836 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13976541 | 13979642 | 13976541 | ID=MS.gene53391 |
| chr4.1 | mRNA | 13976541 | 13979642 | 13976541 | ID=MS.gene53391.t1;Parent=MS.gene53391 |
| chr4.1 | exon | 13976541 | 13976613 | 13976541 | ID=MS.gene53391.t1.exon1;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13976541 | 13976613 | 13976541 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| chr4.1 | exon | 13976904 | 13977182 | 13976904 | ID=MS.gene53391.t1.exon2;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13976904 | 13977182 | 13976904 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| chr4.1 | exon | 13977216 | 13977298 | 13977216 | ID=MS.gene53391.t1.exon3;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13977216 | 13977298 | 13977216 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| chr4.1 | exon | 13978347 | 13978456 | 13978347 | ID=MS.gene53391.t1.exon4;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13978347 | 13978456 | 13978347 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| chr4.1 | exon | 13978540 | 13978688 | 13978540 | ID=MS.gene53391.t1.exon5;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13978540 | 13978688 | 13978540 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| chr4.1 | exon | 13979590 | 13979642 | 13979590 | ID=MS.gene53391.t1.exon6;Parent=MS.gene53391.t1 |
| chr4.1 | CDS | 13979590 | 13979642 | 13979590 | ID=cds.MS.gene53391.t1;Parent=MS.gene53391.t1 |
| Gene Sequence |
| Protein sequence |
