AlfalfaGEDB | MS.gene22992

M. sativa cultivar XinJiangDaYe / MS.gene22992

KEGG: K06632
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22992.t1	XP_003625897.1	97.8	490	8	1	1	487	1	490	5.60E-279	969.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22992.t1	Q8L4H0	59.1	489	184	6	2	480	15	497	1.4e-161	570.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22992.t1	G7KRU4	97.8	490	8	1	1	487	1	490	4.1e-279	969.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene22992	-0.815808	7.65E-52	-1.69E-46
MS.gene04919	MS.gene22992	-0.803531	3.33E-49	-1.69E-46
MS.gene04920	MS.gene22992	-0.825349	4.92E-54	-1.69E-46
MS.gene049283	MS.gene22992	-0.833355	5.59E-56	-1.69E-46
MS.gene049419	MS.gene22992	0.911487	5.76E-83	-1.69E-46
MS.gene049499	MS.gene22992	-0.840075	1.08E-57	-1.69E-46
MS.gene049680	MS.gene22992	-0.832855	7.45E-56	-1.69E-46
MS.gene049861	MS.gene22992	-0.803332	3.67E-49	-1.69E-46
MS.gene049983	MS.gene22992	-0.822216	2.67E-53	-1.69E-46
MS.gene050271	MS.gene22992	-0.821094	4.85E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene024190	MS.gene22992	PPI
MS.gene22992	MS.gene033625	PPI
MS.gene22992	MS.gene55034	PPI
MS.gene22992	MS.gene051901	PPI
MS.gene22992	MS.gene59570	PPI
MS.gene22992	MS.gene73751	PPI
MS.gene23061	MS.gene22992	PPI
MS.gene79763	MS.gene22992	PPI
MS.gene86010	MS.gene22992	PPI
MS.gene95283	MS.gene22992	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22992.t1	MTR_7g108500	97.755	490	8	1	1	487	1	490	0.0	998
MS.gene22992.t1	MTR_8g071230	26.690	281	168	6	235	478	4	283	2.53e-21	96.7
MS.gene22992.t1	MTR_5g026960	26.042	288	171	7	228	478	1	283	3.26e-21	96.3
MS.gene22992.t1	MTR_1g052115	29.730	259	161	12	234	476	3	256	5.54e-20	94.0
MS.gene22992.t1	MTR_2g020380	31.373	255	151	10	235	472	4	251	5.79e-20	94.0
MS.gene22992.t1	MTR_8g098425	32.950	261	148	14	241	481	414	667	1.71e-19	92.4
MS.gene22992.t1	MTR_8g079790	29.670	273	144	11	239	476	129	388	2.95e-19	91.3
MS.gene22992.t1	MTR_4g107490	26.648	349	211	12	161	485	11	338	5.09e-19	90.5
MS.gene22992.t1	MTR_4g094415	28.682	258	169	10	241	485	169	424	6.19e-19	90.1
MS.gene22992.t1	MTR_4g086660	29.304	273	142	10	239	476	141	397	6.46e-19	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22992.t1	AT1G02970	59.100	489	184	6	2	480	15	497	0.0	589
MS.gene22992.t1	AT4G19110	26.978	278	165	6	238	478	7	283	5.70e-23	102
MS.gene22992.t1	AT4G19110	26.978	278	165	6	238	478	7	283	6.10e-23	101
MS.gene22992.t1	AT5G45430	26.619	278	166	6	238	478	7	283	1.16e-20	95.1
MS.gene22992.t1	AT5G45430	26.619	278	166	6	238	478	7	283	1.23e-20	95.1
MS.gene22992.t1	AT3G20860	29.851	268	170	11	234	487	3	266	3.27e-20	93.2
MS.gene22992.t1	AT1G49580	30.961	281	148	12	239	487	154	420	9.06e-20	92.8
MS.gene22992.t1	AT3G19100	30.000	270	144	11	239	476	148	404	1.67e-19	92.0
MS.gene22992.t1	AT1G76040	29.434	265	156	11	234	476	113	368	1.95e-19	91.7
MS.gene22992.t1	AT1G76040	29.434	265	156	11	234	476	113	368	2.12e-19	91.3

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Find 122 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAAGATGTCGACT+GGG	0.667703	7.2:+6516013	MS.gene22992:CDS
AAAATCAAGGGGAAGGAAGA+AGG	0.477940	7.2:+6515464	MS.gene22992:CDS
AAACCCCAAAATCAAGGGGA+AGG	0.559167	7.2:+6515457	MS.gene22992:CDS
AAAGTATTAAAGCGAATAGA+TGG	0.379092	7.2:+6518205	MS.gene22992:CDS
AAATAGGGGTTACTAAAGCA+AGG	0.563788	7.2:-6517781	None:intergenic
AAATATCAACCTTGTCAAGG+TGG	0.623552	7.2:-6519036	None:intergenic
AAATCAAAATCCTTCCATTA+GGG	0.376468	7.2:+6515617	MS.gene22992:CDS
AAATCACCTATGCCAGAATC+AGG	0.426205	7.2:+6519094	MS.gene22992:CDS
AACATCATTGGTAACCCTAA+TGG	0.379417	7.2:-6515631	None:intergenic
AACCAAAGATCCAAATGTGC+AGG	0.530641	7.2:+6517841	MS.gene22992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGACATCCTGATTC+TGG	-	chr7.2:6519109-6519128	None:intergenic	30.0%
AAAAATGGTGTCTATAAGCT+TGG	+	chr7.2:6518917-6518936	MS.gene22992:CDS	30.0%
AATCTTAGGTCTTTCTCTAA+TGG	-	chr7.2:6517105-6517124	None:intergenic	30.0%
AATTCTCATTAAGGATTTCC+TGG	-	chr7.2:6519012-6519031	None:intergenic	30.0%
ACATTGAAACTAGAAATGAC+AGG	-	chr7.2:6516686-6516705	None:intergenic	30.0%
ACTAAACATATCTAACTGGA+GGG	+	chr7.2:6517317-6517336	MS.gene22992:intron	30.0%
ACTATAGATTAAGGAAACCA+TGG	-	chr7.2:6518751-6518770	None:intergenic	30.0%
AGAAAATATCAACCTTGTCA+AGG	-	chr7.2:6519042-6519061	None:intergenic	30.0%
AGAATAATCCGATGATTTCA+GGG	-	chr7.2:6516617-6516636	None:intergenic	30.0%
ATAAAACATGAGTTGCAAAC+AGG	-	chr7.2:6519687-6519706	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	6515447	6519984	6515447	ID=MS.gene22992
chr7.2	mRNA	6515447	6519984	6515447	ID=MS.gene22992.t1;Parent=MS.gene22992
chr7.2	exon	6515447	6515700	6515447	ID=MS.gene22992.t1.exon1;Parent=MS.gene22992.t1
chr7.2	CDS	6515447	6515700	6515447	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6515802	6515862	6515802	ID=MS.gene22992.t1.exon2;Parent=MS.gene22992.t1
chr7.2	CDS	6515802	6515862	6515802	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6515968	6516034	6515968	ID=MS.gene22992.t1.exon3;Parent=MS.gene22992.t1
chr7.2	CDS	6515968	6516034	6515968	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6517596	6517862	6517596	ID=MS.gene22992.t1.exon4;Parent=MS.gene22992.t1
chr7.2	CDS	6517596	6517862	6517596	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6517996	6518063	6517996	ID=MS.gene22992.t1.exon5;Parent=MS.gene22992.t1
chr7.2	CDS	6517996	6518063	6517996	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6518172	6518278	6518172	ID=MS.gene22992.t1.exon6;Parent=MS.gene22992.t1
chr7.2	CDS	6518172	6518278	6518172	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6518353	6518393	6518353	ID=MS.gene22992.t1.exon7;Parent=MS.gene22992.t1
chr7.2	CDS	6518353	6518393	6518353	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6518499	6518647	6518499	ID=MS.gene22992.t1.exon8;Parent=MS.gene22992.t1
chr7.2	CDS	6518499	6518647	6518499	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6518842	6519195	6518842	ID=MS.gene22992.t1.exon9;Parent=MS.gene22992.t1
chr7.2	CDS	6518842	6519195	6518842	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1
chr7.2	exon	6519889	6519984	6519889	ID=MS.gene22992.t1.exon10;Parent=MS.gene22992.t1
chr7.2	CDS	6519889	6519984	6519889	ID=cds.MS.gene22992.t1;Parent=MS.gene22992.t1

Gene Sequence

>MS.gene22992

ATGACGAGAAAAACCCCAAAATCAAGGGGAAGGAAGAAGGCACCACTCGGTGCGAGTAACACAAGACAGTTACAGCTTCAGCTCAGCAAATTCTCTTTCAAACAATACAAACCGTTACCAACAACGACTATAACTTCTTCCGCCTTCCAGAACCTTCTCGATTCAGAGACAAATCAAAATCCTTCCATTAGGGTTACCAATGATGTTACCGATGCTGATTCAAGAGATGGCATTCTTAGTCAAGATTTCTTCTGGTAACAACACGCTTTATCCCTTTTCATTTTCCGAAATTGAGTCGATTCCATTTTTTGGTTTCGAAGTTTGTGATGCATGTGTTTGTGTTTTTCTCTTACAGTACTCCAGATTACATAACTCCGGATAATCAGCGGATTTTGAACGGTATCGATTTCAATAAGGTGGGGTGTATTAGTAAATTAATAATTTTTTTTTAGTATCAATAAATAAAAAGATTAAAAAACTATTTTTTTTTTTTTGTTGTTGTAATGTAATGTGTTCCGCAGGATAATAGCCCTTGCCCTAAATCCCCGGAGAAATTGAATACTACGAAAAGCAAAAGATGTCGACTGGGTATGACTTTTTATTTTTACTGCATGTTCTTACTCACTAATTGCTAATTAAATTATAATTAATTGTTTTTATTTATAAAAATATATATTTAGAAAACTAAATTGATAACATGCTAATATCAGAATAATTTTACCGTGTTTGTGTATGCACATGTATTTATAAATAGTAAAATGGATTTACTAATTTGAAAAACTGGGATGTCTCATCAAGTTTATGGGAACGAGTATGCTGTTAGCTGCAGTGCTTGATTTTTCTTGCTAGTAATACACTTTATGCATGTAGTGCGAATCAGTATGGATTGTGAACATATGTTGATGGTGATTTAGTAGTTTTTATTTCTTCTAACTTAACGTAACAGCCAAATTTGCATGAAAAATGTCTACTCATGGAATTGTACCCTACCACTTAGAAGAGACTGTAGGGTGATAGAGAAGCACATGTCTTACACCATATTCAAGAAGTATGTGATCTATGAAGCACGGACACCATAAGTATTGGATACGACATGTATGAGTGCATATCGGGTACCACTCAGAAGCCATTTTTGAGTATCTGTGCTTCAGAGTATGTGATCACCCCCCCTGAAATCATCGGATTATTCTATACTCCAGTGACCTCCCAATTGTGCATAATGGGGATATTAGAATACCTGTCATTTCTAGTTTCAATGTAGTTCTCCCAATTTATGACTTTGTAGACAATTGGGACAAAAAATCTCTAGCCCCTTTTTATGAAAGGTGTCTGGACTAAACATATGTTCTATCGGACAGCAGTCAGACCGGCAATGTTGTATGGTACGGAGTGTTGGGCGGTTAAGAGCCAACACGAGAGTAAAGTAAGCGTAGCGGAGATGAGGATGTTGCGTTGGATGAGTGGTAAGACTAGACATGATAGGATTAGGAATGACATCATTAGAGAGAGAGTGGGGGTAGCACCTATAGTAGAAAAGTTGGTAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCTGTAGACGCCGTGGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAAGTTAAAAGAGGTAGACCTAAGAAAACCATTAGAGAAAGACCTAAGATTTAGAGGAAGACCTAAGAAAACCATTAGAGGAAGACCTAAGAAAACCATTAGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTCTTTGATAGAACATTATGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTCTGGACTAAACATATCTAACTGGAGGGTGAAACCTATAGCTTAATTGTTTGTACACTATACCATGTTTTTTAAGTTAATTTTCAACATATCTGGTTAAATTGTAGGAACACTGCAGAGTGTAATTACAGTCTGTGTTATTCTTTACACTCTTATACATTCCATGCTACATAGGCTCCCATTTCCCACCACATGGAAAAATTAGTGCTGCTTTTTTTCTTTTCTTCTTATTCCAATGCTATTTATTTACCCATTTTCTCTAATCAACATGCATACTTGTCATAGATGGTGTCTCGGCAAACCCTCTTAGCCCTACCTTTTCTGGTGACCATCAACAAGTTGTGGAACTTGGTAAGGACTCTGTTGCAGAGGAAGTAGCTGTTGATATAACGGTAGCTGCTGGTAAGCCGAAGGCCCAGAACTATGTGTCACATTCTGCAGCTACATTGCGTTGCAGGGCTATACCTCCTCCTTGCTTTAGTAACCCCTATTTAAAGGACCTTTCCCAAAAGGAGACAGATCCCTATGCAAACCAAAGATCCAAATGTGCAGGTATCACTCTAGTCAATCCTTTACAAGTATCCCGTTCATTAATGGTGGAAAAGTCATTGTAACTGGCATGATCTTATTTGTTTTTTATTCATTTATATTGCCATTTTCTAACTGTATAATGGTATGACTGTAGGTTTCTTCCCTAAATTTACAGCTTATGATGGGCTCTCACGCTATCGCACTGACTTTCATGAGATTGAGGTACCATGTTTCAAAAGGAATTTTATTTGTTGAGAACTGTTTTGAATTGGTATTACCTTCATCGCATTCAACTTCATGGTTTTGTATAATTCTTACTTCTCTTATCAGCAAATTGGTCGAGGGTACTTTAGTTGTGTTTTTAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGTACACAGTTACAGCTGGATACAGAAAGGTATCATCTTCATACTACGGAGACTTCTTCTTTTCTTGGGTTTAACCACTAACACCGATATTCTGTGATTGAAGGAGAAAAGCTTTGATGGAGGTTCAAGCTCTGGCAGCATTGGGTTTGTATTTTATGGTTTTCTCTTATTTAAGGTTCAAGCATTGATGGAGTAGGTTTTATTCTAAATTTGTTTATCTTTATTTCGTTTATCATCTTACCTCTATAGGTTACCATGAGAACATTGTGGGCTATTATACTTCATGGTTTGAAAACGAACAACTGTACATTCAGATGGAGATATGTGATCATAGCTTATCTGTAAACAAAGGCTCCGAGTTATTAGCAGAAGGACAAGTGTTAGAAGTTTTATATCAAGTGAGCTTCCTTGTCTGACTGTTATGTAGATTTGATTTGGTACAGATTATCATCATCAGTAACTGTTGTTATCTATGATGAAAGTCGTCCATCGTTTTTGCCATGGTTTCCTTAATCTATAGTAAACCTGCATAACTTTTTACATAATTCGTTGATCACATTCATATTTTGTTTTGATTTGGAAATTTGGACAGGTTGCTAATGCACTGCGATTTATACACGACAAGGGAATAGCTCATCTTGATCTTAAACCTGATAATATTTATGTAAAAAATGGTGTCTATAAGCTTGGTGATTTTGGATGTGCAACTCTTACTGATAGTAGCCTTCCGATTGAAGAAGGAGATGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGACCACCTTGACAAGGTTGATATTTTCTCTTTGGGAGTTTCTATTTATCAACTCATCCGAAAATCACCTATGCCAGAATCAGGATGTCATTTTTTGAATCTTAAAGAAGGCAAGTTGCCACTCCTGCCTGGTCATTCATTGCAATTTCAAAACTTGCTCAAGGTACTATACATTGTTTAATATCGTCGGTGATTCTCACTTCTCTGTGTTTTACATTATCTCTCAACACGTTTGCACGACTAATAAATCCAATGTGTGGTTTGTAGACTTGTAGGAGGTACTTAACAAACTAGACAAATACGTATACAAATGAACTATGATTCTATTGTGGCTATATATGTTGTTTTGATCATTGTTAAAATATGTAAGCTACTATGGTATTTTTACAAATGAACTATGATTCTATTGTGGCTATATATATTGTTTTGATCATTGTTAAAATATGTAAGCTACTATGGTATTTTTACATTGTTTTATTATATAGTGAAAATTAATCATGCTGTACTACATCTCAAAAACCATGCTGTACTACATCTCAAAAACAGAGTATGTTGTACAAAATGCTCTTTATTTATTGTTGAGTTATACAACTATCACATTTAAAATTTGTGATTTGCACAGAATTTTCTGAAGCACCATGGATTGCTATACCTGTTTGCAACTCATGTTTTATATACTTTTTGATATTCATGATATTCAACTTCATGACACATTCTTGATTTCTTGTACCAAGTAGTAAGTAGCATCGTTCTGAATTTTACGATTGCAAAATTTTCATGATGTTGTGTGCTCTTTTCTTGTTGAGCTAATATGTTTGATTTAGTAAATTTATCTGATGTTTTGATATTTATTCAGGCCATGATCGATCCTGATCCGGTTAAGAGGCCTTCTGCCAGAGAGTTGGTAGAGAACCCAATTTTCGACAGGGCCTTAAGAACAGCGAAAAATTGA

Protein sequence

>MS.gene22992.t1

MTRKTPKSRGRKKAPLGASNTRQLQLQLSKFSFKQYKPLPTTTITSSAFQNLLDSETNQNPSIRVTNDVTDADSRDGILSQDFFCTPDYITPDNQRILNGIDFNKDNSPCPKSPEKLNTTKSKRCRLDGVSANPLSPTFSGDHQQVVELGKDSVAEEVAVDITVAAGKPKAQNYVSHSAATLRCRAIPPPCFSNPYLKDLSQKETDPYANQRSKCAGFFPKFTAYDGLSRYRTDFHEIEQIGRGYFSCVFKVLKRIDGCLYAVKRSTQLQLDTERRKALMEVQALAALGYHENIVGYYTSWFENEQLYIQMEICDHSLSVNKGSELLAEGQVLEVLYQVANALRFIHDKGIAHLDLKPDNIYVKNGVYKLGDFGCATLTDSSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGVSIYQLIRKSPMPESGCHFLNLKEGKLPLLPGHSLQFQNLLKAMIDPDPVKRPSARELVENPIFDRALRTAKN