AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55707


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55707.t1 MTR_8g086270 94.595 259 3 1 1 248 1 259 1.48e-179 493
MS.gene55707.t1 MTR_2g091225 80.078 256 40 1 1 245 1 256 2.33e-155 432
MS.gene55707.t1 MTR_2g015980 80.159 252 39 2 8 248 6 257 1.23e-147 412
MS.gene55707.t1 MTR_2g076960 77.165 254 46 2 2 244 3 255 2.39e-143 402
MS.gene55707.t1 MTR_2g091225 78.448 232 39 1 25 245 2 233 1.26e-137 386
MS.gene55707.t1 MTR_4g083060 76.305 249 48 1 1 238 1 249 1.17e-136 386
MS.gene55707.t1 MTR_5g044160 75.102 245 50 1 1 234 1 245 3.58e-134 379
MS.gene55707.t1 MTR_5g064580 69.136 243 62 2 7 236 8 250 3.30e-118 338
MS.gene55707.t1 MTR_3g099380 68.952 248 64 3 2 236 3 250 2.98e-117 336
MS.gene55707.t1 MTR_3g100620 62.241 241 77 2 7 233 11 251 5.32e-105 304
MS.gene55707.t1 MTR_3g099380 64.677 201 58 2 2 189 3 203 4.89e-87 257
MS.gene55707.t1 MTR_0137s0020 50.207 241 103 4 7 233 11 248 2.15e-69 214
MS.gene55707.t1 MTR_3g014060 48.988 247 109 4 1 233 5 248 2.36e-68 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55707.t1 AT2G42590 75.096 261 52 2 1 248 1 261 2.03e-143 402
MS.gene55707.t1 AT2G42590 74.809 262 52 3 1 248 1 262 1.32e-141 397
MS.gene55707.t1 AT2G42590 74.809 262 52 3 1 248 1 262 1.36e-141 398
MS.gene55707.t1 AT1G26480 74.590 244 51 1 2 234 5 248 6.28e-135 381
MS.gene55707.t1 AT1G22300 74.793 242 50 1 6 236 4 245 2.51e-127 361
MS.gene55707.t1 AT1G22300 74.793 242 50 1 6 236 4 245 2.62e-127 361
MS.gene55707.t1 AT1G34760 71.369 241 58 1 6 235 4 244 2.25e-125 356
MS.gene55707.t1 AT1G34760 71.369 241 58 1 6 235 4 244 2.26e-125 356
MS.gene55707.t1 AT1G22300 75.105 237 48 1 6 231 4 240 6.93e-125 355
MS.gene55707.t1 AT1G35160 68.145 248 66 2 2 236 6 253 2.00e-118 339
MS.gene55707.t1 AT1G78300 69.136 243 62 3 7 236 5 247 5.70e-118 337
MS.gene55707.t1 AT5G38480 71.250 240 56 3 7 233 4 243 4.52e-117 335
MS.gene55707.t1 AT5G38480 71.250 240 56 3 7 233 4 243 4.52e-117 335
MS.gene55707.t1 AT1G35160 69.874 239 59 3 2 227 6 244 1.08e-116 335
MS.gene55707.t1 AT5G38480 68.775 253 65 4 7 246 4 255 1.30e-116 334
MS.gene55707.t1 AT4G09000 67.769 242 65 3 2 230 5 246 2.72e-116 333
MS.gene55707.t1 AT3G02520 69.835 242 58 4 7 233 5 246 7.23e-115 330
MS.gene55707.t1 AT3G02520 69.835 242 58 4 7 233 5 246 7.23e-115 330
MS.gene55707.t1 AT4G09000 68.201 239 63 3 2 227 5 243 3.19e-114 330
MS.gene55707.t1 AT5G65430 65.992 247 70 2 1 233 1 247 3.55e-114 327
MS.gene55707.t1 AT5G10450 65.182 247 72 2 1 233 1 247 2.02e-113 325
MS.gene55707.t1 AT5G65430 65.984 244 69 2 1 230 1 244 9.85e-113 324
MS.gene55707.t1 AT5G10450 65.164 244 71 2 1 230 1 244 3.87e-112 322
MS.gene55707.t1 AT5G65430 66.390 241 67 2 1 227 1 241 1.04e-111 322
MS.gene55707.t1 AT5G10450 65.560 241 69 2 1 227 1 241 2.40e-111 321
MS.gene55707.t1 AT5G10450 65.560 241 69 2 1 227 1 241 7.31e-111 320
MS.gene55707.t1 AT5G16050 63.855 249 77 2 1 236 1 249 1.87e-107 311
MS.gene55707.t1 AT5G16050 63.855 249 77 2 1 236 1 249 1.87e-107 311
MS.gene55707.t1 AT1G78220 51.293 232 101 1 6 225 4 235 6.62e-80 240
MS.gene55707.t1 AT1G22290 49.758 207 83 5 6 203 4 198 9.98e-56 178
MS.gene55707.t1 AT1G22290 49.510 204 82 5 6 200 4 195 1.92e-55 176
MS.gene55707.t1 AT2G10450 61.702 47 17 1 193 238 16 62 3.56e-11 58.2

Find 0 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATAAAAATAAATGATT+CGG - 57368:6885-6904 MS.gene55707:intergenic 10.0%
!!! ATTTTTATTTGATAGAATTA+AGG + 57368:6893-6912 MS.gene55707:intron 10.0%
!! AATCATCATAAAAAAAATCA+AGG - 57368:4869-4888 MS.gene55707:intergenic 15.0%
!! ATCATCATAAAAAAAATCAA+GGG - 57368:4868-4887 MS.gene55707:intergenic 15.0%
!! ATTGATTAAGAAATTGAAAT+TGG + 57368:4932-4951 MS.gene55707:intron 15.0%
!! TAGTTATAGGATAAATATAA+AGG - 57368:6291-6310 MS.gene55707:intergenic 15.0%
!! TTGATTAAGAAATTGAAATT+GGG + 57368:4933-4952 MS.gene55707:intron 15.0%
!!! AAAAATTGATTTTGGATAAA+AGG - 57368:6049-6068 MS.gene55707:intergenic 15.0%
!!! TAAAATCAATTTTATGTGTT+TGG - 57368:5906-5925 MS.gene55707:intergenic 15.0%
!!! TCTTTTTCTATAAAATGAAA+GGG + 57368:5313-5332 MS.gene55707:intron 15.0%
!!! TTTTTTAAATATTATGGAAG+AGG + 57368:7464-7483 MS.gene55707:intron 15.0%
!! AAAAATGGAAGTAAAGAAAA+TGG - 57368:4751-4770 MS.gene55707:intergenic 20.0%
!! AAAATGGAAGTAAAGAAAAT+GGG - 57368:4750-4769 MS.gene55707:intergenic 20.0%
!! AAATTATAAAGAAAATAGCC+AGG - 57368:7650-7669 MS.gene55707:intergenic 20.0%
!! ACTCTTAAATCTGTATATAT+AGG - 57368:4809-4828 MS.gene55707:intergenic 20.0%
!! ATAGAATTAAGGATGAAAAT+AGG + 57368:6904-6923 MS.gene55707:intron 20.0%
!! ATGAGTTAAAAAATCTTGTT+TGG - 57368:6012-6031 MS.gene55707:intergenic 20.0%
!! TATCTGTATTTACTTTAAGT+AGG - 57368:7080-7099 MS.gene55707:intergenic 20.0%
!! TCATCATAAAAAAAATCAAG+GGG - 57368:4867-4886 MS.gene55707:intergenic 20.0%
!! TTAAATATGTGAAAAACTGA+TGG - 57368:7199-7218 MS.gene55707:intergenic 20.0%
!! TTATGAATTATCAGATTAAC+AGG - 57368:6436-6455 MS.gene55707:intergenic 20.0%
!!! AGAATTGATTTTGAAATGTT+TGG + 57368:5651-5670 MS.gene55707:intron 20.0%
!!! CTTTTTCTATAAAATGAAAG+GGG + 57368:5314-5333 MS.gene55707:intron 20.0%
!!! GTCTTTTTCTATAAAATGAA+AGG + 57368:5312-5331 MS.gene55707:intron 20.0%
!!! TCAGTTTTTCACATATTTAA+AGG + 57368:7199-7218 MS.gene55707:intron 20.0%
!!! TGAACTTTAAGAGAAAAAAA+TGG - 57368:4766-4785 MS.gene55707:intergenic 20.0%
!!! TTGAAATTTTCATTGTGTTT+TGG + 57368:4908-4927 MS.gene55707:intron 20.0%
!!! TTGATTTTGTATTCAGAATT+TGG + 57368:5688-5707 MS.gene55707:intron 20.0%
! AAAATATGAGTAAAGTTGAC+AGG - 57368:7612-7631 MS.gene55707:intergenic 25.0%
! AAATGAAAGGGGATTATTAT+CGG + 57368:5325-5344 MS.gene55707:intron 25.0%
! AATAAGTACATAAGAAACTG+AGG - 57368:7412-7431 MS.gene55707:intergenic 25.0%
! AATATCTTATCAGAGATCAT+AGG - 57368:6314-6333 MS.gene55707:intergenic 25.0%
! AGTTAAAAGCTACAGATAAT+AGG - 57368:5989-6008 MS.gene55707:intergenic 25.0%
! ATGATACGTTAATGTAAAAG+TGG - 57368:5762-5781 MS.gene55707:intergenic 25.0%
! TATATCTTTGCGGTTTAAAA+TGG + 57368:5440-5459 MS.gene55707:intron 25.0%
!! AAAAAAAGTATGTTCTAGCT+TGG - 57368:6963-6982 MS.gene55707:intergenic 25.0%
!! ATAAAGTCAGATTTTCTAGA+AGG + 57368:7247-7266 MS.gene55707:intron 25.0%
!! ATGCAATTTGTTTATGTAAC+TGG + 57368:7339-7358 MS.gene55707:intron 25.0%
!! CAGAACTTTTTATATCTTTG+CGG + 57368:5430-5449 MS.gene55707:intron 25.0%
!! GTTGTATACTTTTACTGTTT+TGG + 57368:4992-5011 MS.gene55707:intron 25.0%
!! TTAGATTTTGTACTTTGTCT+TGG + 57368:7127-7146 MS.gene55707:intron 25.0%
!!! AAAAAAGTATGTTCTAGCTT+GGG - 57368:6962-6981 MS.gene55707:intergenic 25.0%
!!! ATGATTTGTAGTTCATTTTG+TGG + 57368:6163-6182 MS.gene55707:intron 25.0%
!!! ATTTGATTTTGAACACGTTA+AGG - 57368:7388-7407 MS.gene55707:intergenic 25.0%
!!! GGAGATAAAATTGATTTTAG+AGG + 57368:5625-5644 MS.gene55707:intron 25.0%
AAACATCAAGCTTAGAACAT+TGG - 57368:4834-4853 MS.gene55707:intergenic 30.0%
AATATGTGAAAAACTGATGG+AGG - 57368:7196-7215 MS.gene55707:intergenic 30.0%
AGCATAAGGAAGAATCTAAA+GGG + 57368:5157-5176 MS.gene55707:CDS 30.0%
ATGTCTATCTTAACTGAAGA+TGG + 57368:5534-5553 MS.gene55707:intron 30.0%
ATTATCAGATTAACAGGACT+TGG - 57368:6430-6449 MS.gene55707:intergenic 30.0%
ATTGATTATGCAGCTTCTAA+GGG + 57368:6742-6761 MS.gene55707:CDS 30.0%
CAATAATATGCATACCTTTC+AGG - 57368:6570-6589 MS.gene55707:intergenic 30.0%
CATGATATCACTGCATATAT+TGG - 57368:5241-5260 MS.gene55707:intergenic 30.0%
TAAACAGATCGCTTAATTGT+TGG - 57368:7562-7581 MS.gene55707:intergenic 30.0%
TAGTGAATTAAAGAAGCGAA+GGG - 57368:5577-5596 MS.gene55707:intergenic 30.0%
TATTTGGCGGAATTTAAGAA+TGG + 57368:5348-5367 MS.gene55707:CDS 30.0%
TGAAAAGCTTGACAAGTTTA+TGG - 57368:7154-7173 MS.gene55707:intergenic 30.0%
TGCAACACTTATTTGAATGA+AGG + 57368:6348-6367 MS.gene55707:intron 30.0%
TGGATTGAACAATGAATTCA+AGG - 57368:5742-5761 MS.gene55707:intergenic 30.0%
TGTATTTACTTTAAGTAGGC+CGG - 57368:7076-7095 MS.gene55707:intergenic 30.0%
TGTTTCATGTAGAGAAGAAA+AGG + 57368:6226-6245 MS.gene55707:intron 30.0%
TTTAACAGATGAGGAACAAA+AGG + 57368:7700-7719 MS.gene55707:intron 30.0%
TTTGTTTATGTAACTGGTAG+TGG + 57368:7345-7364 MS.gene55707:intron 30.0%
! AAATTTTGAACTCTCCTGAA+AGG + 57368:6553-6572 MS.gene55707:CDS 30.0%
! AATAGACACACTTGATTTTG+CGG - 57368:6076-6095 MS.gene55707:intergenic 30.0%
!! AAAAAGTATGTTCTAGCTTG+GGG - 57368:6961-6980 MS.gene55707:intergenic 30.0%
!! GTCTAGTCTTATAGCTAAAT+AGG - 57368:7019-7038 MS.gene55707:intergenic 30.0%
!! TATGTGTTTGGAATCACTTT+TGG - 57368:5894-5913 MS.gene55707:intergenic 30.0%
!! TTCTTTTCTAGTATGTTAGC+TGG + 57368:6830-6849 MS.gene55707:intron 30.0%
!! TTTGCTGTTATTTCAAAACC+TGG + 57368:7629-7648 MS.gene55707:intron 30.0%
!!! ACTGTTTTGGTTGATAGAAA+TGG + 57368:5005-5024 MS.gene55707:intron 30.0%
AAACATATCACCGAAGTTTC+AGG - 57368:6614-6633 MS.gene55707:intergenic 35.0%
AATGATTACCTCCATCTTCA+GGG - 57368:6796-6815 MS.gene55707:intergenic 35.0%
ACACACATGATAACCATCAT+AGG - 57368:5486-5505 MS.gene55707:intergenic 35.0%
AGGGGATTATTATCGGTATT+TGG + 57368:5332-5351 MS.gene55707:intron 35.0%
ATATCACCTATGACAAGTAC+CGG - 57368:6105-6124 MS.gene55707:intergenic 35.0%
ATGACACTCCTCATATTTCA+GGG + 57368:6637-6656 MS.gene55707:intron 35.0%
CAGAGATCATAGGTAGTTAT+AGG - 57368:6304-6323 MS.gene55707:intergenic 35.0%
CCTCATCTGTTAAAAAAACG+AGG - 57368:7694-7713 MS.gene55707:intergenic 35.0%
CTAGTGAATTAAAGAAGCGA+AGG - 57368:5578-5597 MS.gene55707:intergenic 35.0%
GAGCATAAGGAAGAATCTAA+AGG + 57368:5156-5175 MS.gene55707:CDS 35.0%
GGATTATTATCGGTATTTGG+CGG + 57368:5335-5354 MS.gene55707:CDS 35.0%
GGCTACCAAAAAATCCATTT+GGG + 57368:7043-7062 MS.gene55707:intron 35.0%
TAATGATTACCTCCATCTTC+AGG - 57368:6797-6816 MS.gene55707:intergenic 35.0%
TAGCTATAAGACTAGACTTC+TGG + 57368:7022-7041 MS.gene55707:intron 35.0%
TCTATCCTCAATTGAGCATA+AGG + 57368:5143-5162 MS.gene55707:CDS 35.0%
TGGCTACCAAAAAATCCATT+TGG + 57368:7042-7061 MS.gene55707:intron 35.0%
TGTGAATGTGAAGAGGATAA+AGG + 57368:5185-5204 MS.gene55707:CDS 35.0%
TTCCTACAGCATAGAAAATC+TGG - 57368:7309-7328 MS.gene55707:intergenic 35.0%
TTCTTCCTTATGCTCAATTG+AGG - 57368:5151-5170 MS.gene55707:intergenic 35.0%
TTTGAACTCTCCTGAAACTT+CGG + 57368:6601-6620 MS.gene55707:intron 35.0%
! CATTGATTATGCAGCTTCTA+AGG + 57368:6741-6760 MS.gene55707:CDS 35.0%
! GATAAAGGAGTATAGACACA+AGG + 57368:5200-5219 MS.gene55707:CDS 35.0%
! GTTCTAAGCTTGATGTTTCT+TGG + 57368:4836-4855 MS.gene55707:intron 35.0%
! GTTTTCTTTTCTGCCTATGA+TGG + 57368:5470-5489 MS.gene55707:intron 35.0%
! TGTATGCTTGGTTTCACTTT+TGG + 57368:5601-5620 MS.gene55707:intron 35.0%
!! AAGAAAATGGGTTAGAGAGA+AGG - 57368:4738-4757 MS.gene55707:intergenic 35.0%
!! ATTCACTAGTCTTGTATGCT+TGG + 57368:5589-5608 MS.gene55707:intron 35.0%
!! CAGTTTTGACATTTTCGTCA+TGG + 57368:7583-7602 MS.gene55707:intron 35.0%
!! GCGGTGACAAAAATTGATTT+TGG - 57368:6057-6076 MS.gene55707:intergenic 35.0%
!!! CCTCGTTTTTTTAACAGATG+AGG + 57368:7691-7710 MS.gene55707:intron 35.0%
!!! GTTTTGGTTGATAGAAATGG+TGG + 57368:5008-5027 MS.gene55707:intron 35.0%
AAAATCCATGAACAAGCGAG+GGG + 57368:7512-7531 MS.gene55707:intron 40.0%
AAAGCCAAACCCAATCGAAT+GGG - 57368:6510-6529 MS.gene55707:intergenic 40.0%
AAATAGGTCAAACCAACCGA+CGG + 57368:6920-6939 MS.gene55707:intron 40.0%
AACAGATGAGGAACAAAAGG+TGG + 57368:7703-7722 MS.gene55707:intron 40.0%
ATCAGATTAACAGGACTTGG+CGG - 57368:6427-6446 MS.gene55707:intergenic 40.0%
ATGTAGAGAAGAAAAGGAGC+GGG + 57368:6232-6251 MS.gene55707:intron 40.0%
CAAAATCCATGAACAAGCGA+GGG + 57368:7511-7530 MS.gene55707:intron 40.0%
CATAGGTGATATGAGCTTTG+AGG + 57368:6113-6132 MS.gene55707:intron 40.0%
CATGACACTCCTCATATTTC+AGG + 57368:6636-6655 MS.gene55707:intron 40.0%
CATGTAGAGAAGAAAAGGAG+CGG + 57368:6231-6250 MS.gene55707:intron 40.0%
CTACAGCATAGAAAATCTGG+TGG - 57368:7306-7325 MS.gene55707:intergenic 40.0%
GAACAAAAGGTGGAATCTTC+AGG + 57368:7713-7732 MS.gene55707:CDS 40.0%
GAGAGAAACCTTCTATCAGT+TGG + 57368:5078-5097 MS.gene55707:CDS 40.0%
GGAATGATGTGAATGTGAAG+AGG + 57368:5178-5197 MS.gene55707:CDS 40.0%
TCAAAATCCATGAACAAGCG+AGG + 57368:7510-7529 MS.gene55707:intron 40.0%
TCTTGTAGCCAACTGATAGA+AGG - 57368:5089-5108 MS.gene55707:intergenic 40.0%
TGGATATGTAGTTGCTTGCT+TGG + 57368:5510-5529 MS.gene55707:intron 40.0%
TGGTTATCATGTGTGTTGTG+TGG + 57368:5490-5509 MS.gene55707:intron 40.0%
TTTGTCACCTCAGAACCAAA+CGG + 57368:5857-5876 MS.gene55707:intron 40.0%
! AAAGGAGTATAGACACAAGG+TGG + 57368:5203-5222 MS.gene55707:CDS 40.0%
! ACTTGTTAGGTAGGAGAAAG+TGG + 57368:6136-6155 MS.gene55707:intron 40.0%
! CACCAGATTTTCTATGCTGT+AGG + 57368:7304-7323 MS.gene55707:intron 40.0%
! GACTCGATCTGAAATGTGAA+TGG + 57368:6852-6871 MS.gene55707:intron 40.0%
! TCATTCCATGGAAGCATATC+AGG + 57368:5395-5414 MS.gene55707:CDS 40.0%
!! AAGTGTGTCTATTTCTGAGC+CGG + 57368:6083-6102 MS.gene55707:intron 40.0%
!! ATGAGCTTTGAGGACTTGTT+AGG + 57368:6123-6142 MS.gene55707:intron 40.0%
!! ATGCTTGGTTTCACTTTTGG+AGG + 57368:5604-5623 MS.gene55707:intron 40.0%
!!! TGAGGCCCAAATGGATTTTT+TGG - 57368:7051-7070 MS.gene55707:intergenic 40.0%
AAAAGGAGCGGGAAGATAAG+AGG + 57368:6243-6262 MS.gene55707:intron 45.0%
AAAGGAGCGGGAAGATAAGA+GGG + 57368:6244-6263 MS.gene55707:intron 45.0%
AATAGGTCAAACCAACCGAC+GGG + 57368:6921-6940 MS.gene55707:intron 45.0%
ACCTCAGAACCAAACGGTTT+AGG + 57368:5863-5882 MS.gene55707:intron 45.0%
ACTTCTGACATCCCTGAAGA+TGG + 57368:6782-6801 MS.gene55707:CDS 45.0%
AGTTGGCTACAAGAACGTAG+TGG + 57368:5095-5114 MS.gene55707:CDS 45.0%
CAAAGCCAAACCCAATCGAA+TGG - 57368:6511-6530 MS.gene55707:intergenic 45.0%
CATCAAATGCCTGCTTAGCA+AGG - 57368:6670-6689 MS.gene55707:intergenic 45.0%
CTCAACAGCCAACTTCACAT+TGG - 57368:6380-6399 MS.gene55707:intergenic 45.0%
GAACAAGCTGAACGCTATGA+AGG + 57368:4710-4729 MS.gene55707:CDS 45.0%
GGCATCAACCAATGTGAAGT+TGG + 57368:6369-6388 MS.gene55707:intron 45.0%
GGTGGAAGCAATGAAGAATG+TGG + 57368:5026-5045 MS.gene55707:CDS 45.0%
GTGACATGCCCTGAAATATG+AGG - 57368:6648-6667 MS.gene55707:intergenic 45.0%
GTTGGCTACAAGAACGTAGT+GGG + 57368:5096-5115 MS.gene55707:CDS 45.0%
TAAGGGACAACCTCACATTG+TGG + 57368:6759-6778 MS.gene55707:CDS 45.0%
TGATGAAGCAATCTCCGAGT+TGG + 57368:6685-6704 MS.gene55707:CDS 45.0%
TGTCAGAAGTCCACAATGTG+AGG - 57368:6772-6791 MS.gene55707:intergenic 45.0%
TGTGAAAAACTGATGGAGGC+TGG - 57368:7192-7211 MS.gene55707:intergenic 45.0%
! CTCACTCAGAGTATCCAACT+CGG - 57368:6702-6721 MS.gene55707:intergenic 45.0%
! GAAGTTTTCACGTTCCTTGG+TGG - 57368:4669-4688 MS.gene55707:intergenic 45.0%
! GAATGGTGATGAGCGAAAAG+AGG + 57368:5365-5384 MS.gene55707:CDS 45.0%
! GACGAAGTTTTCACGTTCCT+TGG - 57368:4672-4691 MS.gene55707:intergenic 45.0%
! TTGGCTCTTCCTAAACCGTT+TGG - 57368:5875-5894 MS.gene55707:intergenic 45.0%
!! AGTATGTTCTAGCTTGGGGT+AGG - 57368:6957-6976 MS.gene55707:intergenic 45.0%
!! GCTAGATGTTGAGTTGACAG+TGG + 57368:5053-5072 MS.gene55707:CDS 45.0%
!! GCTTTGAGGACTTGTTAGGT+AGG + 57368:6127-6146 MS.gene55707:intron 45.0%
!! GTATGTTCTAGCTTGGGGTA+GGG - 57368:6956-6975 MS.gene55707:intergenic 45.0%
!! TCCTAAACCGTTTGGTTCTG+AGG - 57368:5867-5886 MS.gene55707:intergenic 45.0%
!!! AAAACATTTTTTAAATATTA+TGG + 57368:7458-7477 MS.gene55707:intron 5.0%
AAGGAGCGGGAAGATAAGAG+GGG + 57368:6245-6264 MS.gene55707:intron 50.0%
AATCCATTTGGGCCTCAGAC+CGG + 57368:7054-7073 MS.gene55707:intron 50.0%
AATCGAATGGGATGCGTTGG+AGG - 57368:6498-6517 MS.gene55707:intergenic 50.0%
ACTTTAAGTAGGCCGGTCTG+AGG - 57368:7069-7088 MS.gene55707:intergenic 50.0%
AGAGGCTGCTGATCATTCCA+TGG + 57368:5383-5402 MS.gene55707:CDS 50.0%
CCAACGCATCCCATTCGATT+GGG + 57368:6498-6517 MS.gene55707:CDS 50.0%
CTTATTCCATCGTCCTCTGC+TGG + 57368:5279-5298 MS.gene55707:CDS 50.0%
GAATCTTCAGGAGCTGTTGG+AGG + 57368:7725-7744 MS.gene55707:CDS 50.0%
GACACTAGATTCACCAGCAG+AGG - 57368:5295-5314 MS.gene55707:intergenic 50.0%
GCAGACCTGATATGCTTCCA+TGG - 57368:5403-5422 MS.gene55707:intergenic 50.0%
GCATCCCATTCGATTGGGTT+TGG + 57368:6503-6522 MS.gene55707:CDS 50.0%
GTGGAATCTTCAGGAGCTGT+TGG + 57368:7722-7741 MS.gene55707:CDS 50.0%
TCCAACGCATCCCATTCGAT+TGG + 57368:6497-6516 MS.gene55707:CDS 50.0%
TCTGACATCCCTGAAGATGG+AGG + 57368:6785-6804 MS.gene55707:CDS 50.0%
TCTGAGCCGGTACTTGTCAT+AGG + 57368:6096-6115 MS.gene55707:intron 50.0%
! CGAGTTGGATACTCTGAGTG+AGG + 57368:6700-6719 MS.gene55707:CDS 50.0%
! TTCAGCTTGTTCAGCGAGCT+TGG - 57368:4702-4721 MS.gene55707:intergenic 50.0%
!! AGAACGTAGTGGGTGCTCAT+AGG + 57368:5106-5125 MS.gene55707:CDS 50.0%
!! GAACGTAGTGGGTGCTCATA+GGG + 57368:5107-5126 MS.gene55707:CDS 50.0%
AGGAGCGGGAAGATAAGAGG+GGG + 57368:6246-6265 MS.gene55707:intron 55.0%
CCCAATCGAATGGGATGCGT+TGG - 57368:6501-6520 MS.gene55707:intergenic 55.0%
GAATGCCCCTCGCTTGTTCA+TGG - 57368:7520-7539 MS.gene55707:intergenic 55.0%
GATTCACCAGCAGAGGACGA+TGG - 57368:5288-5307 MS.gene55707:intergenic 55.0%
GGCATGTCACCTTGCTAAGC+AGG + 57368:6658-6677 MS.gene55707:CDS 55.0%
GTGCTCATAGGGCTTCATGG+AGG + 57368:5118-5137 MS.gene55707:CDS 55.0%
TAACTCCCCTTCTGCTGCAG+TGG - 57368:6475-6494 MS.gene55707:intergenic 55.0%
TGGGTGCTCATAGGGCTTCA+TGG + 57368:5115-5134 MS.gene55707:CDS 55.0%
AACCAACCGACGGGAGCCAA+TGG + 57368:6930-6949 MS.gene55707:intron 60.0%
ACCGCTTCCACTGCAGCAGA+AGG + 57368:6465-6484 MS.gene55707:CDS 60.0%
CCCTTCTGCTGCAGTGGAAG+CGG - 57368:6469-6488 MS.gene55707:intergenic 60.0%
CCGCTTCCACTGCAGCAGAA+GGG + 57368:6466-6485 MS.gene55707:CDS 60.0%
CGCTTCCACTGCAGCAGAAG+GGG + 57368:6467-6486 MS.gene55707:CDS 60.0%
CTAGCTTGGGGTAGGGCCAT+TGG - 57368:6949-6968 MS.gene55707:intergenic 60.0%
! AGGCCGGTCTGAGGCCCAAA+TGG - 57368:7060-7079 MS.gene55707:intergenic 65.0%
!! GTAGGGCCATTGGCTCCCGT+CGG - 57368:6939-6958 MS.gene55707:intergenic 65.0%
!! GGCCATTGGCTCCCGTCGGT+TGG - 57368:6935-6954 MS.gene55707:intergenic 70.0%


Chromosome Type Strat End Strand Name
57368 gene 4659 7760 4659 ID=MS.gene55707
57368 mRNA 4659 7760 4659 ID=MS.gene55707.t1;Parent=MS.gene55707
57368 exon 4659 4731 4659 ID=MS.gene55707.t1.exon1;Parent=MS.gene55707.t1
57368 CDS 4659 4731 4659 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
57368 exon 5022 5300 5022 ID=MS.gene55707.t1.exon2;Parent=MS.gene55707.t1
57368 CDS 5022 5300 5022 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
57368 exon 5334 5416 5334 ID=MS.gene55707.t1.exon3;Parent=MS.gene55707.t1
57368 CDS 5334 5416 5334 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
57368 exon 6465 6574 6465 ID=MS.gene55707.t1.exon4;Parent=MS.gene55707.t1
57368 CDS 6465 6574 6465 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
57368 exon 6658 6806 6658 ID=MS.gene55707.t1.exon5;Parent=MS.gene55707.t1
57368 CDS 6658 6806 6658 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
57368 exon 7708 7760 7708 ID=MS.gene55707.t1.exon6;Parent=MS.gene55707.t1
57368 CDS 7708 7760 7708 ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1
Gene Sequence

>MS.gene55707

ATGGCTTCCACCAAGGAACGTGAAAACTTCGTCTACATCGCCAAGCTCGCTGAACAAGCTGAACGCTATGAAGGTACCTTCTCTCTAACCCATTTTCTTTACTTCCATTTTTTTCTCTTAAAGTTCACTTTTTTTCTTACTATGATTCCTATATATACAGATTTAAGAGTCTCCAATGTTCTAAGCTTGATGTTTCTTGGTCACACCCCTTGATTTTTTTTATGATGATTCTTTTTACATATATTGAAATTGAAATTTTCATTGTGTTTTGGAATTGATTAAGAAATTGAAATTGGGTTTTTTGTAATTATTTTTCTTAATTGTATTGATAAAGTTGTATACTTTTACTGTTTTGGTTGATAGAAATGGTGGAAGCAATGAAGAATGTGGCGAAGCTAGATGTTGAGTTGACAGTGGAAGAGAGAAACCTTCTATCAGTTGGCTACAAGAACGTAGTGGGTGCTCATAGGGCTTCATGGAGGATTCTATCCTCAATTGAGCATAAGGAAGAATCTAAAGGGAATGATGTGAATGTGAAGAGGATAAAGGAGTATAGACACAAGGTGGAGTCTGAATTATCCAATATATGCAGTGATATCATGTCTATTATTGATGATCATCTTATTCCATCGTCCTCTGCTGGTGAATCTAGTGTCTTTTTCTATAAAATGAAAGGGGATTATTATCGGTATTTGGCGGAATTTAAGAATGGTGATGAGCGAAAAGAGGCTGCTGATCATTCCATGGAAGCATATCAGGTCTGCTTGTATTCAGAACTTTTTATATCTTTGCGGTTTAAAATGGACTTGATGTTTTCTTTTCTGCCTATGATGGTTATCATGTGTGTTGTGTGGATATGTAGTTGCTTGCTTGGCATGTCTATCTTAACTGAAGATGGAGAATTATTTTTTGTTTCCCTTCGCTTCTTTAATTCACTAGTCTTGTATGCTTGGTTTCACTTTTGGAGGAGATAAAATTGATTTTAGAGGTGTAGAATTGATTTTGAAATGTTTGGATGTTTGAGTAGAATTGATTTTGTATTCAGAATTTGGAGCTTTTGTCTCTACAATTGATATTTAGCCTTGAATTCATTGTTCAATCCACTTTTACATTAACGTATCATATCATAAATTACTTCACATTTAACTCACTTTTATTATGAATCATTTTCATAGAATCAATTCATTTAAAATTAATTTTTGTCACCTCAGAACCAAACGGTTTAGGAAGAGCCAAAAGTGATTCCAAACACATAAAATTGATTTTAACATGTTTATGTGATATTGTTTAGAATTGAATTTGTCTTTAGAATTGATTCTAACTTGAACCTATTATCTGTAGCTTTTAACTCCAAACAAGATTTTTTAACTCATATTTACTGATCACTCCTTTTATCCAAAATCAATTTTTGTCACCGCAAAATCAAGTGTGTCTATTTCTGAGCCGGTACTTGTCATAGGTGATATGAGCTTTGAGGACTTGTTAGGTAGGAGAAAGTGGAGTGATGATTTGTAGTTCATTTTGTGGCAAATAAATGATAATGTTAGAGTAGACACTCACTTTAATGTGTTTCATGTAGAGAAGAAAAGGAGCGGGAAGATAAGAGGGGGAAATATGATATTCATTATACCTTTATATTTATCCTATAACTACCTATGATCTCTGATAAGATATTCTGTTGTTATACATTGCAACACTTATTTGAATGAAGGCATCAACCAATGTGAAGTTGGCTGTTGAGTTTTGAGTAGTCAGAAGTAGTTTTCCGCCAAGTCCTGTTAATCTGATAATTCATAAATATTGCAGACCGCTTCCACTGCAGCAGAAGGGGAGTTACCTCCAACGCATCCCATTCGATTGGGTTTGGCTTTGAACTTCTCTGTGTTTTATTATGAAATTTTGAACTCTCCTGAAAGGTATGCATATTATTGTTATTGTGAAATTTGAACTCTCCTGAAACTTCGGTGATATGTTTAGCATGACACTCCTCATATTTCAGGGCATGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCCGAGTTGGATACTCTGAGTGAGGAGTCTTACAAAGACAGCACATTGATTATGCAGCTTCTAAGGGACAACCTCACATTGTGGACTTCTGACATCCCTGAAGATGGAGGTAATCATTAATTGAAATTAGTATTCTTTTCTAGTATGTTAGCTGGACTCGATCTGAAATGTGAATGGAGTAAATCCGAATCATTTATTTTTATTTGATAGAATTAAGGATGAAAATAGGTCAAACCAACCGACGGGAGCCAATGGCCCTACCCCAAGCTAGAACATACTTTTTTTTTAAATAGACAATGCTAAGACTTATTTCAGATGCCTATTTAGCTATAAGACTAGACTTCTGGCTACCAAAAAATCCATTTGGGCCTCAGACCGGCCTACTTAAAGTAAATACAGATAATACTTTTCATTACTATTATTGTTATATTAGATTTTGTACTTTGTCTTGGACCATAAACTTGTCAAGCTTTTCAGCAATTTTAAGCATACCAGCCTCCATCAGTTTTTCACATATTTAAAGGTAGTATTATAAAATAGAATCTAAATATAAAGTCAGATTTTCTAGAAGGTCATGCTAAATCTCAAAATAGAAGTTTATATCACCACCAGATTTTCTATGCTGTAGGAAGCTGATAATCATGCAATTTGTTTATGTAACTGGTAGTGGTGTGTCATTCATTGTATCCTTAACGTGTTCAAAATCAAATGCCTCAGTTTCTTATGTACTTATTTTAAGCTCACTAAAAAGCATCTTGAGAAAACATTTTTTAAATATTATGGAAGAGGTTTAGCTCTGCTGTATAGAAAGATCAAAATCCATGAACAAGCGAGGGGCATTCTATATTTGACTCGTTTTAGCCAACAATTAAGCGATCTGTTTAGCAGTTTTGACATTTTCGTCATGGTTTCCTGTCAACTTTACTCATATTTTGCTGTTATTTCAAAACCTGGCTATTTTCTTTATAATTTTCAAGTGATTAATATTACTTACCTCGTTTTTTTAACAGATGAGGAACAAAAGGTGGAATCTTCAGGAGCTGTTGGAGGTGAAAATGCATAG

Protein sequence

>MS.gene55707.t1

MASTKERENFVYIAKLAEQAERYEEMVEAMKNVAKLDVELTVEERNLLSVGYKNVVGAHRASWRILSSIEHKEESKGNDVNVKRIKEYRHKVESELSNICSDIMSIIDDHLIPSSSAGDYYRYLAEFKNGDERKEAADHSMEAYQTASTAAEGELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGDEEQKVESSGAVGGENA