Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55707.t1 | XP_003629763.2 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.80E-127 | 465.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55707.t1 | Q96452 | 85.3 | 259 | 26 | 2 | 1 | 248 | 1 | 258 | 1.5e-114 | 413.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55707.t1 | G7LIR4 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.3e-127 | 465.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04918 | MS.gene55707 | 0.849732 | 2.68E-60 | -1.69E-46 |
MS.gene04919 | MS.gene55707 | 0.823933 | 1.06E-53 | -1.69E-46 |
MS.gene04920 | MS.gene55707 | 0.853647 | 2.08E-61 | -1.69E-46 |
MS.gene049254 | MS.gene55707 | 0.8199 | 9.11E-53 | -1.69E-46 |
MS.gene049283 | MS.gene55707 | 0.872026 | 4.36E-67 | -1.69E-46 |
MS.gene049368 | MS.gene55707 | 0.802131 | 6.49E-49 | -1.69E-46 |
MS.gene049419 | MS.gene55707 | -0.806029 | 1.00E-49 | -1.69E-46 |
MS.gene049499 | MS.gene55707 | 0.833654 | 4.71E-56 | -1.69E-46 |
MS.gene049653 | MS.gene55707 | 0.817797 | 2.74E-52 | -1.69E-46 |
MS.gene049680 | MS.gene55707 | 0.843185 | 1.64E-58 | -1.69E-46 |
MS.gene049983 | MS.gene55707 | 0.856053 | 4.17E-62 | -1.69E-46 |
MS.gene050384 | MS.gene55707 | 0.800945 | 1.14E-48 | -1.69E-46 |
MS.gene050559 | MS.gene55707 | 0.828629 | 8.08E-55 | -1.69E-46 |
MS.gene050561 | MS.gene55707 | 0.817262 | 3.61E-52 | -1.69E-46 |
MS.gene050562 | MS.gene55707 | 0.808296 | 3.32E-50 | -1.69E-46 |
MS.gene050646 | MS.gene55707 | 0.814719 | 1.34E-51 | -1.69E-46 |
MS.gene050654 | MS.gene55707 | 0.804983 | 1.66E-49 | -1.69E-46 |
MS.gene050689 | MS.gene55707 | 0.831199 | 1.91E-55 | -1.69E-46 |
MS.gene050752 | MS.gene55707 | 0.802944 | 4.41E-49 | -1.69E-46 |
MS.gene050945 | MS.gene55707 | 0.847245 | 1.31E-59 | -1.69E-46 |
MS.gene050955 | MS.gene55707 | 0.808478 | 3.04E-50 | -1.69E-46 |
MS.gene051003 | MS.gene55707 | 0.842807 | 2.06E-58 | -1.69E-46 |
MS.gene051154 | MS.gene55707 | 0.821213 | 4.55E-53 | -1.69E-46 |
MS.gene051234 | MS.gene55707 | 0.808031 | 3.78E-50 | -1.69E-46 |
MS.gene051343 | MS.gene55707 | 0.836975 | 6.83E-57 | -1.69E-46 |
MS.gene051363 | MS.gene55707 | 0.803852 | 2.86E-49 | -1.69E-46 |
MS.gene051597 | MS.gene55707 | 0.842365 | 2.70E-58 | -1.69E-46 |
MS.gene051637 | MS.gene55707 | 0.802224 | 6.21E-49 | -1.69E-46 |
MS.gene051699 | MS.gene55707 | 0.838835 | 2.27E-57 | -1.69E-46 |
MS.gene051744 | MS.gene55707 | 0.806694 | 7.26E-50 | -1.69E-46 |
MS.gene051975 | MS.gene55707 | 0.839855 | 1.23E-57 | -1.69E-46 |
MS.gene052072 | MS.gene55707 | 0.831536 | 1.58E-55 | -1.69E-46 |
MS.gene052108 | MS.gene55707 | 0.834704 | 2.57E-56 | -1.69E-46 |
MS.gene052500 | MS.gene55707 | 0.824234 | 9.01E-54 | -1.69E-46 |
MS.gene052502 | MS.gene55707 | 0.81495 | 1.19E-51 | -1.69E-46 |
MS.gene052518 | MS.gene55707 | 0.801357 | 9.35E-49 | -1.69E-46 |
MS.gene052533 | MS.gene55707 | 0.851275 | 9.87E-61 | -1.69E-46 |
MS.gene052793 | MS.gene55707 | 0.80579 | 1.13E-49 | -1.69E-46 |
MS.gene052826 | MS.gene55707 | 0.817943 | 2.54E-52 | -1.69E-46 |
MS.gene052954 | MS.gene55707 | 0.851768 | 7.16E-61 | -1.69E-46 |
MS.gene053006 | MS.gene55707 | 0.85272 | 3.84E-61 | -1.69E-46 |
MS.gene053058 | MS.gene55707 | 0.823622 | 1.25E-53 | -1.69E-46 |
MS.gene053228 | MS.gene55707 | 0.802546 | 5.33E-49 | -1.69E-46 |
MS.gene053272 | MS.gene55707 | -0.817738 | 2.82E-52 | -1.69E-46 |
MS.gene053575 | MS.gene55707 | 0.819436 | 1.16E-52 | -1.69E-46 |
MS.gene05364 | MS.gene55707 | 0.814258 | 1.69E-51 | -1.69E-46 |
MS.gene053879 | MS.gene55707 | 0.851963 | 6.30E-61 | -1.69E-46 |
MS.gene053931 | MS.gene55707 | 0.858447 | 8.19E-63 | -1.69E-46 |
MS.gene053963 | MS.gene55707 | 0.839122 | 1.91E-57 | -1.69E-46 |
MS.gene054004 | MS.gene55707 | 0.839157 | 1.87E-57 | -1.69E-46 |
MS.gene054403 | MS.gene55707 | 0.807127 | 5.88E-50 | -1.69E-46 |
MS.gene054413 | MS.gene55707 | 0.820567 | 6.41E-53 | -1.69E-46 |
MS.gene054651 | MS.gene55707 | 0.826912 | 2.09E-54 | -1.69E-46 |
MS.gene054657 | MS.gene55707 | 0.800168 | 1.64E-48 | -1.69E-46 |
MS.gene054892 | MS.gene55707 | 0.827428 | 1.57E-54 | -1.69E-46 |
MS.gene054893 | MS.gene55707 | 0.834805 | 2.42E-56 | -1.69E-46 |
MS.gene054957 | MS.gene55707 | 0.845716 | 3.42E-59 | -1.69E-46 |
MS.gene055150 | MS.gene55707 | 0.867579 | 1.23E-65 | -1.69E-46 |
MS.gene05517 | MS.gene55707 | 0.814912 | 1.21E-51 | -1.69E-46 |
MS.gene055222 | MS.gene55707 | 0.82291 | 1.84E-53 | -1.69E-46 |
MS.gene055513 | MS.gene55707 | 0.81449 | 1.50E-51 | -1.69E-46 |
MS.gene055841 | MS.gene55707 | 0.858827 | 6.31E-63 | -1.69E-46 |
MS.gene056071 | MS.gene55707 | 0.833174 | 6.21E-56 | -1.69E-46 |
MS.gene056363 | MS.gene55707 | 0.80372 | 3.05E-49 | -1.69E-46 |
MS.gene056699 | MS.gene55707 | 0.855357 | 6.66E-62 | -1.69E-46 |
MS.gene056776 | MS.gene55707 | 0.810768 | 9.78E-51 | -1.69E-46 |
MS.gene056825 | MS.gene55707 | 0.802534 | 5.36E-49 | -1.69E-46 |
MS.gene05686 | MS.gene55707 | 0.841409 | 4.83E-58 | -1.69E-46 |
MS.gene05689 | MS.gene55707 | 0.801765 | 7.72E-49 | -1.69E-46 |
MS.gene056986 | MS.gene55707 | 0.841552 | 4.43E-58 | -1.69E-46 |
MS.gene057034 | MS.gene55707 | 0.818373 | 2.03E-52 | -1.69E-46 |
MS.gene057102 | MS.gene55707 | 0.845469 | 3.98E-59 | -1.69E-46 |
MS.gene057155 | MS.gene55707 | 0.808369 | 3.20E-50 | -1.69E-46 |
MS.gene057208 | MS.gene55707 | 0.878056 | 3.82E-69 | -1.69E-46 |
MS.gene057392 | MS.gene55707 | 0.859481 | 4.01E-63 | -1.69E-46 |
MS.gene057622 | MS.gene55707 | 0.844871 | 5.78E-59 | -1.69E-46 |
MS.gene057705 | MS.gene55707 | 0.802924 | 4.45E-49 | -1.69E-46 |
MS.gene057999 | MS.gene55707 | 0.834603 | 2.73E-56 | -1.69E-46 |
MS.gene058008 | MS.gene55707 | 0.854433 | 1.23E-61 | -1.69E-46 |
MS.gene058009 | MS.gene55707 | 0.844826 | 5.94E-59 | -1.69E-46 |
MS.gene058095 | MS.gene55707 | 0.820509 | 6.61E-53 | -1.69E-46 |
MS.gene058126 | MS.gene55707 | 0.808301 | 3.31E-50 | -1.69E-46 |
MS.gene058159 | MS.gene55707 | 0.827221 | 1.76E-54 | -1.69E-46 |
MS.gene058292 | MS.gene55707 | 0.801662 | 8.10E-49 | -1.69E-46 |
MS.gene058592 | MS.gene55707 | 0.837553 | 4.86E-57 | -1.69E-46 |
MS.gene058781 | MS.gene55707 | 0.86976 | 2.43E-66 | -1.69E-46 |
MS.gene058783 | MS.gene55707 | 0.863287 | 2.77E-64 | -1.69E-46 |
MS.gene05878 | MS.gene55707 | 0.836444 | 9.32E-57 | -1.69E-46 |
MS.gene058979 | MS.gene55707 | 0.808038 | 3.77E-50 | -1.69E-46 |
MS.gene059146 | MS.gene55707 | 0.874894 | 4.73E-68 | -1.69E-46 |
MS.gene05952 | MS.gene55707 | 0.86974 | 2.47E-66 | -1.69E-46 |
MS.gene05956 | MS.gene55707 | 0.807885 | 4.06E-50 | -1.69E-46 |
MS.gene05985 | MS.gene55707 | -0.870745 | 1.16E-66 | -1.69E-46 |
MS.gene059901 | MS.gene55707 | -0.843935 | 1.03E-58 | -1.69E-46 |
MS.gene060244 | MS.gene55707 | 0.867975 | 9.20E-66 | -1.69E-46 |
MS.gene060259 | MS.gene55707 | 0.803973 | 2.70E-49 | -1.69E-46 |
MS.gene060365 | MS.gene55707 | 0.815928 | 7.19E-52 | -1.69E-46 |
MS.gene060527 | MS.gene55707 | 0.80042 | 1.45E-48 | -1.69E-46 |
MS.gene060763 | MS.gene55707 | 0.817403 | 3.36E-52 | -1.69E-46 |
MS.gene060933 | MS.gene55707 | 0.838317 | 3.09E-57 | -1.69E-46 |
MS.gene060935 | MS.gene55707 | 0.898049 | 7.76E-77 | -1.69E-46 |
MS.gene060937 | MS.gene55707 | 0.894355 | 2.67E-75 | -1.69E-46 |
MS.gene061100 | MS.gene55707 | 0.809718 | 1.65E-50 | -1.69E-46 |
MS.gene061188 | MS.gene55707 | 0.810986 | 8.77E-51 | -1.69E-46 |
MS.gene061243 | MS.gene55707 | 0.812476 | 4.16E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55707.t1 | MTR_8g086270 | 94.595 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.48e-179 | 493 |
MS.gene55707.t1 | MTR_2g091225 | 80.078 | 256 | 40 | 1 | 1 | 245 | 1 | 256 | 2.33e-155 | 432 |
MS.gene55707.t1 | MTR_2g015980 | 80.159 | 252 | 39 | 2 | 8 | 248 | 6 | 257 | 1.23e-147 | 412 |
MS.gene55707.t1 | MTR_2g076960 | 77.165 | 254 | 46 | 2 | 2 | 244 | 3 | 255 | 2.39e-143 | 402 |
MS.gene55707.t1 | MTR_2g091225 | 78.448 | 232 | 39 | 1 | 25 | 245 | 2 | 233 | 1.26e-137 | 386 |
MS.gene55707.t1 | MTR_4g083060 | 76.305 | 249 | 48 | 1 | 1 | 238 | 1 | 249 | 1.17e-136 | 386 |
MS.gene55707.t1 | MTR_5g044160 | 75.102 | 245 | 50 | 1 | 1 | 234 | 1 | 245 | 3.58e-134 | 379 |
MS.gene55707.t1 | MTR_5g064580 | 69.136 | 243 | 62 | 2 | 7 | 236 | 8 | 250 | 3.30e-118 | 338 |
MS.gene55707.t1 | MTR_3g099380 | 68.952 | 248 | 64 | 3 | 2 | 236 | 3 | 250 | 2.98e-117 | 336 |
MS.gene55707.t1 | MTR_3g100620 | 62.241 | 241 | 77 | 2 | 7 | 233 | 11 | 251 | 5.32e-105 | 304 |
MS.gene55707.t1 | MTR_3g099380 | 64.677 | 201 | 58 | 2 | 2 | 189 | 3 | 203 | 4.89e-87 | 257 |
MS.gene55707.t1 | MTR_0137s0020 | 50.207 | 241 | 103 | 4 | 7 | 233 | 11 | 248 | 2.15e-69 | 214 |
MS.gene55707.t1 | MTR_3g014060 | 48.988 | 247 | 109 | 4 | 1 | 233 | 5 | 248 | 2.36e-68 | 211 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55707.t1 | AT2G42590 | 75.096 | 261 | 52 | 2 | 1 | 248 | 1 | 261 | 2.03e-143 | 402 |
MS.gene55707.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.32e-141 | 397 |
MS.gene55707.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.36e-141 | 398 |
MS.gene55707.t1 | AT1G26480 | 74.590 | 244 | 51 | 1 | 2 | 234 | 5 | 248 | 6.28e-135 | 381 |
MS.gene55707.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.51e-127 | 361 |
MS.gene55707.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.62e-127 | 361 |
MS.gene55707.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.25e-125 | 356 |
MS.gene55707.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.26e-125 | 356 |
MS.gene55707.t1 | AT1G22300 | 75.105 | 237 | 48 | 1 | 6 | 231 | 4 | 240 | 6.93e-125 | 355 |
MS.gene55707.t1 | AT1G35160 | 68.145 | 248 | 66 | 2 | 2 | 236 | 6 | 253 | 2.00e-118 | 339 |
MS.gene55707.t1 | AT1G78300 | 69.136 | 243 | 62 | 3 | 7 | 236 | 5 | 247 | 5.70e-118 | 337 |
MS.gene55707.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
MS.gene55707.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
MS.gene55707.t1 | AT1G35160 | 69.874 | 239 | 59 | 3 | 2 | 227 | 6 | 244 | 1.08e-116 | 335 |
MS.gene55707.t1 | AT5G38480 | 68.775 | 253 | 65 | 4 | 7 | 246 | 4 | 255 | 1.30e-116 | 334 |
MS.gene55707.t1 | AT4G09000 | 67.769 | 242 | 65 | 3 | 2 | 230 | 5 | 246 | 2.72e-116 | 333 |
MS.gene55707.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
MS.gene55707.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
MS.gene55707.t1 | AT4G09000 | 68.201 | 239 | 63 | 3 | 2 | 227 | 5 | 243 | 3.19e-114 | 330 |
MS.gene55707.t1 | AT5G65430 | 65.992 | 247 | 70 | 2 | 1 | 233 | 1 | 247 | 3.55e-114 | 327 |
MS.gene55707.t1 | AT5G10450 | 65.182 | 247 | 72 | 2 | 1 | 233 | 1 | 247 | 2.02e-113 | 325 |
MS.gene55707.t1 | AT5G65430 | 65.984 | 244 | 69 | 2 | 1 | 230 | 1 | 244 | 9.85e-113 | 324 |
MS.gene55707.t1 | AT5G10450 | 65.164 | 244 | 71 | 2 | 1 | 230 | 1 | 244 | 3.87e-112 | 322 |
MS.gene55707.t1 | AT5G65430 | 66.390 | 241 | 67 | 2 | 1 | 227 | 1 | 241 | 1.04e-111 | 322 |
MS.gene55707.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 2.40e-111 | 321 |
MS.gene55707.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 7.31e-111 | 320 |
MS.gene55707.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
MS.gene55707.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
MS.gene55707.t1 | AT1G78220 | 51.293 | 232 | 101 | 1 | 6 | 225 | 4 | 235 | 6.62e-80 | 240 |
MS.gene55707.t1 | AT1G22290 | 49.758 | 207 | 83 | 5 | 6 | 203 | 4 | 198 | 9.98e-56 | 178 |
MS.gene55707.t1 | AT1G22290 | 49.510 | 204 | 82 | 5 | 6 | 200 | 4 | 195 | 1.92e-55 | 176 |
MS.gene55707.t1 | AT2G10450 | 61.702 | 47 | 17 | 1 | 193 | 238 | 16 | 62 | 3.56e-11 | 58.2 |
Find 0 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAATAAAAATAAATGATT+CGG | - | 57368:6885-6904 | MS.gene55707:intergenic | 10.0% |
!!! | ATTTTTATTTGATAGAATTA+AGG | + | 57368:6893-6912 | MS.gene55707:intron | 10.0% |
!! | AATCATCATAAAAAAAATCA+AGG | - | 57368:4869-4888 | MS.gene55707:intergenic | 15.0% |
!! | ATCATCATAAAAAAAATCAA+GGG | - | 57368:4868-4887 | MS.gene55707:intergenic | 15.0% |
!! | ATTGATTAAGAAATTGAAAT+TGG | + | 57368:4932-4951 | MS.gene55707:intron | 15.0% |
!! | TAGTTATAGGATAAATATAA+AGG | - | 57368:6291-6310 | MS.gene55707:intergenic | 15.0% |
!! | TTGATTAAGAAATTGAAATT+GGG | + | 57368:4933-4952 | MS.gene55707:intron | 15.0% |
!!! | AAAAATTGATTTTGGATAAA+AGG | - | 57368:6049-6068 | MS.gene55707:intergenic | 15.0% |
!!! | TAAAATCAATTTTATGTGTT+TGG | - | 57368:5906-5925 | MS.gene55707:intergenic | 15.0% |
!!! | TCTTTTTCTATAAAATGAAA+GGG | + | 57368:5313-5332 | MS.gene55707:intron | 15.0% |
!!! | TTTTTTAAATATTATGGAAG+AGG | + | 57368:7464-7483 | MS.gene55707:intron | 15.0% |
!! | AAAAATGGAAGTAAAGAAAA+TGG | - | 57368:4751-4770 | MS.gene55707:intergenic | 20.0% |
!! | AAAATGGAAGTAAAGAAAAT+GGG | - | 57368:4750-4769 | MS.gene55707:intergenic | 20.0% |
!! | AAATTATAAAGAAAATAGCC+AGG | - | 57368:7650-7669 | MS.gene55707:intergenic | 20.0% |
!! | ACTCTTAAATCTGTATATAT+AGG | - | 57368:4809-4828 | MS.gene55707:intergenic | 20.0% |
!! | ATAGAATTAAGGATGAAAAT+AGG | + | 57368:6904-6923 | MS.gene55707:intron | 20.0% |
!! | ATGAGTTAAAAAATCTTGTT+TGG | - | 57368:6012-6031 | MS.gene55707:intergenic | 20.0% |
!! | TATCTGTATTTACTTTAAGT+AGG | - | 57368:7080-7099 | MS.gene55707:intergenic | 20.0% |
!! | TCATCATAAAAAAAATCAAG+GGG | - | 57368:4867-4886 | MS.gene55707:intergenic | 20.0% |
!! | TTAAATATGTGAAAAACTGA+TGG | - | 57368:7199-7218 | MS.gene55707:intergenic | 20.0% |
!! | TTATGAATTATCAGATTAAC+AGG | - | 57368:6436-6455 | MS.gene55707:intergenic | 20.0% |
!!! | AGAATTGATTTTGAAATGTT+TGG | + | 57368:5651-5670 | MS.gene55707:intron | 20.0% |
!!! | CTTTTTCTATAAAATGAAAG+GGG | + | 57368:5314-5333 | MS.gene55707:intron | 20.0% |
!!! | GTCTTTTTCTATAAAATGAA+AGG | + | 57368:5312-5331 | MS.gene55707:intron | 20.0% |
!!! | TCAGTTTTTCACATATTTAA+AGG | + | 57368:7199-7218 | MS.gene55707:intron | 20.0% |
!!! | TGAACTTTAAGAGAAAAAAA+TGG | - | 57368:4766-4785 | MS.gene55707:intergenic | 20.0% |
!!! | TTGAAATTTTCATTGTGTTT+TGG | + | 57368:4908-4927 | MS.gene55707:intron | 20.0% |
!!! | TTGATTTTGTATTCAGAATT+TGG | + | 57368:5688-5707 | MS.gene55707:intron | 20.0% |
! | AAAATATGAGTAAAGTTGAC+AGG | - | 57368:7612-7631 | MS.gene55707:intergenic | 25.0% |
! | AAATGAAAGGGGATTATTAT+CGG | + | 57368:5325-5344 | MS.gene55707:intron | 25.0% |
! | AATAAGTACATAAGAAACTG+AGG | - | 57368:7412-7431 | MS.gene55707:intergenic | 25.0% |
! | AATATCTTATCAGAGATCAT+AGG | - | 57368:6314-6333 | MS.gene55707:intergenic | 25.0% |
! | AGTTAAAAGCTACAGATAAT+AGG | - | 57368:5989-6008 | MS.gene55707:intergenic | 25.0% |
! | ATGATACGTTAATGTAAAAG+TGG | - | 57368:5762-5781 | MS.gene55707:intergenic | 25.0% |
! | TATATCTTTGCGGTTTAAAA+TGG | + | 57368:5440-5459 | MS.gene55707:intron | 25.0% |
!! | AAAAAAAGTATGTTCTAGCT+TGG | - | 57368:6963-6982 | MS.gene55707:intergenic | 25.0% |
!! | ATAAAGTCAGATTTTCTAGA+AGG | + | 57368:7247-7266 | MS.gene55707:intron | 25.0% |
!! | ATGCAATTTGTTTATGTAAC+TGG | + | 57368:7339-7358 | MS.gene55707:intron | 25.0% |
!! | CAGAACTTTTTATATCTTTG+CGG | + | 57368:5430-5449 | MS.gene55707:intron | 25.0% |
!! | GTTGTATACTTTTACTGTTT+TGG | + | 57368:4992-5011 | MS.gene55707:intron | 25.0% |
!! | TTAGATTTTGTACTTTGTCT+TGG | + | 57368:7127-7146 | MS.gene55707:intron | 25.0% |
!!! | AAAAAAGTATGTTCTAGCTT+GGG | - | 57368:6962-6981 | MS.gene55707:intergenic | 25.0% |
!!! | ATGATTTGTAGTTCATTTTG+TGG | + | 57368:6163-6182 | MS.gene55707:intron | 25.0% |
!!! | ATTTGATTTTGAACACGTTA+AGG | - | 57368:7388-7407 | MS.gene55707:intergenic | 25.0% |
!!! | GGAGATAAAATTGATTTTAG+AGG | + | 57368:5625-5644 | MS.gene55707:intron | 25.0% |
AAACATCAAGCTTAGAACAT+TGG | - | 57368:4834-4853 | MS.gene55707:intergenic | 30.0% | |
AATATGTGAAAAACTGATGG+AGG | - | 57368:7196-7215 | MS.gene55707:intergenic | 30.0% | |
AGCATAAGGAAGAATCTAAA+GGG | + | 57368:5157-5176 | MS.gene55707:CDS | 30.0% | |
ATGTCTATCTTAACTGAAGA+TGG | + | 57368:5534-5553 | MS.gene55707:intron | 30.0% | |
ATTATCAGATTAACAGGACT+TGG | - | 57368:6430-6449 | MS.gene55707:intergenic | 30.0% | |
ATTGATTATGCAGCTTCTAA+GGG | + | 57368:6742-6761 | MS.gene55707:CDS | 30.0% | |
CAATAATATGCATACCTTTC+AGG | - | 57368:6570-6589 | MS.gene55707:intergenic | 30.0% | |
CATGATATCACTGCATATAT+TGG | - | 57368:5241-5260 | MS.gene55707:intergenic | 30.0% | |
TAAACAGATCGCTTAATTGT+TGG | - | 57368:7562-7581 | MS.gene55707:intergenic | 30.0% | |
TAGTGAATTAAAGAAGCGAA+GGG | - | 57368:5577-5596 | MS.gene55707:intergenic | 30.0% | |
TATTTGGCGGAATTTAAGAA+TGG | + | 57368:5348-5367 | MS.gene55707:CDS | 30.0% | |
TGAAAAGCTTGACAAGTTTA+TGG | - | 57368:7154-7173 | MS.gene55707:intergenic | 30.0% | |
TGCAACACTTATTTGAATGA+AGG | + | 57368:6348-6367 | MS.gene55707:intron | 30.0% | |
TGGATTGAACAATGAATTCA+AGG | - | 57368:5742-5761 | MS.gene55707:intergenic | 30.0% | |
TGTATTTACTTTAAGTAGGC+CGG | - | 57368:7076-7095 | MS.gene55707:intergenic | 30.0% | |
TGTTTCATGTAGAGAAGAAA+AGG | + | 57368:6226-6245 | MS.gene55707:intron | 30.0% | |
TTTAACAGATGAGGAACAAA+AGG | + | 57368:7700-7719 | MS.gene55707:intron | 30.0% | |
TTTGTTTATGTAACTGGTAG+TGG | + | 57368:7345-7364 | MS.gene55707:intron | 30.0% | |
! | AAATTTTGAACTCTCCTGAA+AGG | + | 57368:6553-6572 | MS.gene55707:CDS | 30.0% |
! | AATAGACACACTTGATTTTG+CGG | - | 57368:6076-6095 | MS.gene55707:intergenic | 30.0% |
!! | AAAAAGTATGTTCTAGCTTG+GGG | - | 57368:6961-6980 | MS.gene55707:intergenic | 30.0% |
!! | GTCTAGTCTTATAGCTAAAT+AGG | - | 57368:7019-7038 | MS.gene55707:intergenic | 30.0% |
!! | TATGTGTTTGGAATCACTTT+TGG | - | 57368:5894-5913 | MS.gene55707:intergenic | 30.0% |
!! | TTCTTTTCTAGTATGTTAGC+TGG | + | 57368:6830-6849 | MS.gene55707:intron | 30.0% |
!! | TTTGCTGTTATTTCAAAACC+TGG | + | 57368:7629-7648 | MS.gene55707:intron | 30.0% |
!!! | ACTGTTTTGGTTGATAGAAA+TGG | + | 57368:5005-5024 | MS.gene55707:intron | 30.0% |
AAACATATCACCGAAGTTTC+AGG | - | 57368:6614-6633 | MS.gene55707:intergenic | 35.0% | |
AATGATTACCTCCATCTTCA+GGG | - | 57368:6796-6815 | MS.gene55707:intergenic | 35.0% | |
ACACACATGATAACCATCAT+AGG | - | 57368:5486-5505 | MS.gene55707:intergenic | 35.0% | |
AGGGGATTATTATCGGTATT+TGG | + | 57368:5332-5351 | MS.gene55707:intron | 35.0% | |
ATATCACCTATGACAAGTAC+CGG | - | 57368:6105-6124 | MS.gene55707:intergenic | 35.0% | |
ATGACACTCCTCATATTTCA+GGG | + | 57368:6637-6656 | MS.gene55707:intron | 35.0% | |
CAGAGATCATAGGTAGTTAT+AGG | - | 57368:6304-6323 | MS.gene55707:intergenic | 35.0% | |
CCTCATCTGTTAAAAAAACG+AGG | - | 57368:7694-7713 | MS.gene55707:intergenic | 35.0% | |
CTAGTGAATTAAAGAAGCGA+AGG | - | 57368:5578-5597 | MS.gene55707:intergenic | 35.0% | |
GAGCATAAGGAAGAATCTAA+AGG | + | 57368:5156-5175 | MS.gene55707:CDS | 35.0% | |
GGATTATTATCGGTATTTGG+CGG | + | 57368:5335-5354 | MS.gene55707:CDS | 35.0% | |
GGCTACCAAAAAATCCATTT+GGG | + | 57368:7043-7062 | MS.gene55707:intron | 35.0% | |
TAATGATTACCTCCATCTTC+AGG | - | 57368:6797-6816 | MS.gene55707:intergenic | 35.0% | |
TAGCTATAAGACTAGACTTC+TGG | + | 57368:7022-7041 | MS.gene55707:intron | 35.0% | |
TCTATCCTCAATTGAGCATA+AGG | + | 57368:5143-5162 | MS.gene55707:CDS | 35.0% | |
TGGCTACCAAAAAATCCATT+TGG | + | 57368:7042-7061 | MS.gene55707:intron | 35.0% | |
TGTGAATGTGAAGAGGATAA+AGG | + | 57368:5185-5204 | MS.gene55707:CDS | 35.0% | |
TTCCTACAGCATAGAAAATC+TGG | - | 57368:7309-7328 | MS.gene55707:intergenic | 35.0% | |
TTCTTCCTTATGCTCAATTG+AGG | - | 57368:5151-5170 | MS.gene55707:intergenic | 35.0% | |
TTTGAACTCTCCTGAAACTT+CGG | + | 57368:6601-6620 | MS.gene55707:intron | 35.0% | |
! | CATTGATTATGCAGCTTCTA+AGG | + | 57368:6741-6760 | MS.gene55707:CDS | 35.0% |
! | GATAAAGGAGTATAGACACA+AGG | + | 57368:5200-5219 | MS.gene55707:CDS | 35.0% |
! | GTTCTAAGCTTGATGTTTCT+TGG | + | 57368:4836-4855 | MS.gene55707:intron | 35.0% |
! | GTTTTCTTTTCTGCCTATGA+TGG | + | 57368:5470-5489 | MS.gene55707:intron | 35.0% |
! | TGTATGCTTGGTTTCACTTT+TGG | + | 57368:5601-5620 | MS.gene55707:intron | 35.0% |
!! | AAGAAAATGGGTTAGAGAGA+AGG | - | 57368:4738-4757 | MS.gene55707:intergenic | 35.0% |
!! | ATTCACTAGTCTTGTATGCT+TGG | + | 57368:5589-5608 | MS.gene55707:intron | 35.0% |
!! | CAGTTTTGACATTTTCGTCA+TGG | + | 57368:7583-7602 | MS.gene55707:intron | 35.0% |
!! | GCGGTGACAAAAATTGATTT+TGG | - | 57368:6057-6076 | MS.gene55707:intergenic | 35.0% |
!!! | CCTCGTTTTTTTAACAGATG+AGG | + | 57368:7691-7710 | MS.gene55707:intron | 35.0% |
!!! | GTTTTGGTTGATAGAAATGG+TGG | + | 57368:5008-5027 | MS.gene55707:intron | 35.0% |
AAAATCCATGAACAAGCGAG+GGG | + | 57368:7512-7531 | MS.gene55707:intron | 40.0% | |
AAAGCCAAACCCAATCGAAT+GGG | - | 57368:6510-6529 | MS.gene55707:intergenic | 40.0% | |
AAATAGGTCAAACCAACCGA+CGG | + | 57368:6920-6939 | MS.gene55707:intron | 40.0% | |
AACAGATGAGGAACAAAAGG+TGG | + | 57368:7703-7722 | MS.gene55707:intron | 40.0% | |
ATCAGATTAACAGGACTTGG+CGG | - | 57368:6427-6446 | MS.gene55707:intergenic | 40.0% | |
ATGTAGAGAAGAAAAGGAGC+GGG | + | 57368:6232-6251 | MS.gene55707:intron | 40.0% | |
CAAAATCCATGAACAAGCGA+GGG | + | 57368:7511-7530 | MS.gene55707:intron | 40.0% | |
CATAGGTGATATGAGCTTTG+AGG | + | 57368:6113-6132 | MS.gene55707:intron | 40.0% | |
CATGACACTCCTCATATTTC+AGG | + | 57368:6636-6655 | MS.gene55707:intron | 40.0% | |
CATGTAGAGAAGAAAAGGAG+CGG | + | 57368:6231-6250 | MS.gene55707:intron | 40.0% | |
CTACAGCATAGAAAATCTGG+TGG | - | 57368:7306-7325 | MS.gene55707:intergenic | 40.0% | |
GAACAAAAGGTGGAATCTTC+AGG | + | 57368:7713-7732 | MS.gene55707:CDS | 40.0% | |
GAGAGAAACCTTCTATCAGT+TGG | + | 57368:5078-5097 | MS.gene55707:CDS | 40.0% | |
GGAATGATGTGAATGTGAAG+AGG | + | 57368:5178-5197 | MS.gene55707:CDS | 40.0% | |
TCAAAATCCATGAACAAGCG+AGG | + | 57368:7510-7529 | MS.gene55707:intron | 40.0% | |
TCTTGTAGCCAACTGATAGA+AGG | - | 57368:5089-5108 | MS.gene55707:intergenic | 40.0% | |
TGGATATGTAGTTGCTTGCT+TGG | + | 57368:5510-5529 | MS.gene55707:intron | 40.0% | |
TGGTTATCATGTGTGTTGTG+TGG | + | 57368:5490-5509 | MS.gene55707:intron | 40.0% | |
TTTGTCACCTCAGAACCAAA+CGG | + | 57368:5857-5876 | MS.gene55707:intron | 40.0% | |
! | AAAGGAGTATAGACACAAGG+TGG | + | 57368:5203-5222 | MS.gene55707:CDS | 40.0% |
! | ACTTGTTAGGTAGGAGAAAG+TGG | + | 57368:6136-6155 | MS.gene55707:intron | 40.0% |
! | CACCAGATTTTCTATGCTGT+AGG | + | 57368:7304-7323 | MS.gene55707:intron | 40.0% |
! | GACTCGATCTGAAATGTGAA+TGG | + | 57368:6852-6871 | MS.gene55707:intron | 40.0% |
! | TCATTCCATGGAAGCATATC+AGG | + | 57368:5395-5414 | MS.gene55707:CDS | 40.0% |
!! | AAGTGTGTCTATTTCTGAGC+CGG | + | 57368:6083-6102 | MS.gene55707:intron | 40.0% |
!! | ATGAGCTTTGAGGACTTGTT+AGG | + | 57368:6123-6142 | MS.gene55707:intron | 40.0% |
!! | ATGCTTGGTTTCACTTTTGG+AGG | + | 57368:5604-5623 | MS.gene55707:intron | 40.0% |
!!! | TGAGGCCCAAATGGATTTTT+TGG | - | 57368:7051-7070 | MS.gene55707:intergenic | 40.0% |
AAAAGGAGCGGGAAGATAAG+AGG | + | 57368:6243-6262 | MS.gene55707:intron | 45.0% | |
AAAGGAGCGGGAAGATAAGA+GGG | + | 57368:6244-6263 | MS.gene55707:intron | 45.0% | |
AATAGGTCAAACCAACCGAC+GGG | + | 57368:6921-6940 | MS.gene55707:intron | 45.0% | |
ACCTCAGAACCAAACGGTTT+AGG | + | 57368:5863-5882 | MS.gene55707:intron | 45.0% | |
ACTTCTGACATCCCTGAAGA+TGG | + | 57368:6782-6801 | MS.gene55707:CDS | 45.0% | |
AGTTGGCTACAAGAACGTAG+TGG | + | 57368:5095-5114 | MS.gene55707:CDS | 45.0% | |
CAAAGCCAAACCCAATCGAA+TGG | - | 57368:6511-6530 | MS.gene55707:intergenic | 45.0% | |
CATCAAATGCCTGCTTAGCA+AGG | - | 57368:6670-6689 | MS.gene55707:intergenic | 45.0% | |
CTCAACAGCCAACTTCACAT+TGG | - | 57368:6380-6399 | MS.gene55707:intergenic | 45.0% | |
GAACAAGCTGAACGCTATGA+AGG | + | 57368:4710-4729 | MS.gene55707:CDS | 45.0% | |
GGCATCAACCAATGTGAAGT+TGG | + | 57368:6369-6388 | MS.gene55707:intron | 45.0% | |
GGTGGAAGCAATGAAGAATG+TGG | + | 57368:5026-5045 | MS.gene55707:CDS | 45.0% | |
GTGACATGCCCTGAAATATG+AGG | - | 57368:6648-6667 | MS.gene55707:intergenic | 45.0% | |
GTTGGCTACAAGAACGTAGT+GGG | + | 57368:5096-5115 | MS.gene55707:CDS | 45.0% | |
TAAGGGACAACCTCACATTG+TGG | + | 57368:6759-6778 | MS.gene55707:CDS | 45.0% | |
TGATGAAGCAATCTCCGAGT+TGG | + | 57368:6685-6704 | MS.gene55707:CDS | 45.0% | |
TGTCAGAAGTCCACAATGTG+AGG | - | 57368:6772-6791 | MS.gene55707:intergenic | 45.0% | |
TGTGAAAAACTGATGGAGGC+TGG | - | 57368:7192-7211 | MS.gene55707:intergenic | 45.0% | |
! | CTCACTCAGAGTATCCAACT+CGG | - | 57368:6702-6721 | MS.gene55707:intergenic | 45.0% |
! | GAAGTTTTCACGTTCCTTGG+TGG | - | 57368:4669-4688 | MS.gene55707:intergenic | 45.0% |
! | GAATGGTGATGAGCGAAAAG+AGG | + | 57368:5365-5384 | MS.gene55707:CDS | 45.0% |
! | GACGAAGTTTTCACGTTCCT+TGG | - | 57368:4672-4691 | MS.gene55707:intergenic | 45.0% |
! | TTGGCTCTTCCTAAACCGTT+TGG | - | 57368:5875-5894 | MS.gene55707:intergenic | 45.0% |
!! | AGTATGTTCTAGCTTGGGGT+AGG | - | 57368:6957-6976 | MS.gene55707:intergenic | 45.0% |
!! | GCTAGATGTTGAGTTGACAG+TGG | + | 57368:5053-5072 | MS.gene55707:CDS | 45.0% |
!! | GCTTTGAGGACTTGTTAGGT+AGG | + | 57368:6127-6146 | MS.gene55707:intron | 45.0% |
!! | GTATGTTCTAGCTTGGGGTA+GGG | - | 57368:6956-6975 | MS.gene55707:intergenic | 45.0% |
!! | TCCTAAACCGTTTGGTTCTG+AGG | - | 57368:5867-5886 | MS.gene55707:intergenic | 45.0% |
!!! | AAAACATTTTTTAAATATTA+TGG | + | 57368:7458-7477 | MS.gene55707:intron | 5.0% |
AAGGAGCGGGAAGATAAGAG+GGG | + | 57368:6245-6264 | MS.gene55707:intron | 50.0% | |
AATCCATTTGGGCCTCAGAC+CGG | + | 57368:7054-7073 | MS.gene55707:intron | 50.0% | |
AATCGAATGGGATGCGTTGG+AGG | - | 57368:6498-6517 | MS.gene55707:intergenic | 50.0% | |
ACTTTAAGTAGGCCGGTCTG+AGG | - | 57368:7069-7088 | MS.gene55707:intergenic | 50.0% | |
AGAGGCTGCTGATCATTCCA+TGG | + | 57368:5383-5402 | MS.gene55707:CDS | 50.0% | |
CCAACGCATCCCATTCGATT+GGG | + | 57368:6498-6517 | MS.gene55707:CDS | 50.0% | |
CTTATTCCATCGTCCTCTGC+TGG | + | 57368:5279-5298 | MS.gene55707:CDS | 50.0% | |
GAATCTTCAGGAGCTGTTGG+AGG | + | 57368:7725-7744 | MS.gene55707:CDS | 50.0% | |
GACACTAGATTCACCAGCAG+AGG | - | 57368:5295-5314 | MS.gene55707:intergenic | 50.0% | |
GCAGACCTGATATGCTTCCA+TGG | - | 57368:5403-5422 | MS.gene55707:intergenic | 50.0% | |
GCATCCCATTCGATTGGGTT+TGG | + | 57368:6503-6522 | MS.gene55707:CDS | 50.0% | |
GTGGAATCTTCAGGAGCTGT+TGG | + | 57368:7722-7741 | MS.gene55707:CDS | 50.0% | |
TCCAACGCATCCCATTCGAT+TGG | + | 57368:6497-6516 | MS.gene55707:CDS | 50.0% | |
TCTGACATCCCTGAAGATGG+AGG | + | 57368:6785-6804 | MS.gene55707:CDS | 50.0% | |
TCTGAGCCGGTACTTGTCAT+AGG | + | 57368:6096-6115 | MS.gene55707:intron | 50.0% | |
! | CGAGTTGGATACTCTGAGTG+AGG | + | 57368:6700-6719 | MS.gene55707:CDS | 50.0% |
! | TTCAGCTTGTTCAGCGAGCT+TGG | - | 57368:4702-4721 | MS.gene55707:intergenic | 50.0% |
!! | AGAACGTAGTGGGTGCTCAT+AGG | + | 57368:5106-5125 | MS.gene55707:CDS | 50.0% |
!! | GAACGTAGTGGGTGCTCATA+GGG | + | 57368:5107-5126 | MS.gene55707:CDS | 50.0% |
AGGAGCGGGAAGATAAGAGG+GGG | + | 57368:6246-6265 | MS.gene55707:intron | 55.0% | |
CCCAATCGAATGGGATGCGT+TGG | - | 57368:6501-6520 | MS.gene55707:intergenic | 55.0% | |
GAATGCCCCTCGCTTGTTCA+TGG | - | 57368:7520-7539 | MS.gene55707:intergenic | 55.0% | |
GATTCACCAGCAGAGGACGA+TGG | - | 57368:5288-5307 | MS.gene55707:intergenic | 55.0% | |
GGCATGTCACCTTGCTAAGC+AGG | + | 57368:6658-6677 | MS.gene55707:CDS | 55.0% | |
GTGCTCATAGGGCTTCATGG+AGG | + | 57368:5118-5137 | MS.gene55707:CDS | 55.0% | |
TAACTCCCCTTCTGCTGCAG+TGG | - | 57368:6475-6494 | MS.gene55707:intergenic | 55.0% | |
TGGGTGCTCATAGGGCTTCA+TGG | + | 57368:5115-5134 | MS.gene55707:CDS | 55.0% | |
AACCAACCGACGGGAGCCAA+TGG | + | 57368:6930-6949 | MS.gene55707:intron | 60.0% | |
ACCGCTTCCACTGCAGCAGA+AGG | + | 57368:6465-6484 | MS.gene55707:CDS | 60.0% | |
CCCTTCTGCTGCAGTGGAAG+CGG | - | 57368:6469-6488 | MS.gene55707:intergenic | 60.0% | |
CCGCTTCCACTGCAGCAGAA+GGG | + | 57368:6466-6485 | MS.gene55707:CDS | 60.0% | |
CGCTTCCACTGCAGCAGAAG+GGG | + | 57368:6467-6486 | MS.gene55707:CDS | 60.0% | |
CTAGCTTGGGGTAGGGCCAT+TGG | - | 57368:6949-6968 | MS.gene55707:intergenic | 60.0% | |
! | AGGCCGGTCTGAGGCCCAAA+TGG | - | 57368:7060-7079 | MS.gene55707:intergenic | 65.0% |
!! | GTAGGGCCATTGGCTCCCGT+CGG | - | 57368:6939-6958 | MS.gene55707:intergenic | 65.0% |
!! | GGCCATTGGCTCCCGTCGGT+TGG | - | 57368:6935-6954 | MS.gene55707:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
57368 | gene | 4659 | 7760 | 4659 | ID=MS.gene55707 |
57368 | mRNA | 4659 | 7760 | 4659 | ID=MS.gene55707.t1;Parent=MS.gene55707 |
57368 | exon | 4659 | 4731 | 4659 | ID=MS.gene55707.t1.exon1;Parent=MS.gene55707.t1 |
57368 | CDS | 4659 | 4731 | 4659 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
57368 | exon | 5022 | 5300 | 5022 | ID=MS.gene55707.t1.exon2;Parent=MS.gene55707.t1 |
57368 | CDS | 5022 | 5300 | 5022 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
57368 | exon | 5334 | 5416 | 5334 | ID=MS.gene55707.t1.exon3;Parent=MS.gene55707.t1 |
57368 | CDS | 5334 | 5416 | 5334 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
57368 | exon | 6465 | 6574 | 6465 | ID=MS.gene55707.t1.exon4;Parent=MS.gene55707.t1 |
57368 | CDS | 6465 | 6574 | 6465 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
57368 | exon | 6658 | 6806 | 6658 | ID=MS.gene55707.t1.exon5;Parent=MS.gene55707.t1 |
57368 | CDS | 6658 | 6806 | 6658 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
57368 | exon | 7708 | 7760 | 7708 | ID=MS.gene55707.t1.exon6;Parent=MS.gene55707.t1 |
57368 | CDS | 7708 | 7760 | 7708 | ID=cds.MS.gene55707.t1;Parent=MS.gene55707.t1 |
Gene Sequence |
Protein sequence |