AlfalfaGEDB | MS.gene60384

M. sativa cultivar XinJiangDaYe / MS.gene60384

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60384.t1	AES90838.1	93.8	81	5	0	1	81	1	81	9.40E-30	139

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60384.t1	G7JHL7	93.8	81	5	0	1	81	1	81	6.8e-30	139.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene60384	0.830085	3.58E-55	-1.69E-46
MS.gene04919	MS.gene60384	0.822712	2.05E-53	-1.69E-46
MS.gene04920	MS.gene60384	0.844071	9.49E-59	-1.69E-46
MS.gene049283	MS.gene60384	0.853918	1.74E-61	-1.69E-46
MS.gene049419	MS.gene60384	-0.846812	1.72E-59	-1.69E-46
MS.gene049499	MS.gene60384	0.849212	3.74E-60	-1.69E-46
MS.gene049680	MS.gene60384	0.865822	4.47E-65	-1.69E-46
MS.gene049983	MS.gene60384	0.827489	1.52E-54	-1.69E-46
MS.gene050271	MS.gene60384	0.808498	3.01E-50	-1.69E-46
MS.gene05029	MS.gene60384	0.815332	9.76E-52	-1.69E-46
MS.gene050752	MS.gene60384	0.817632	2.98E-52	-1.69E-46
MS.gene050945	MS.gene60384	0.843647	1.23E-58	-1.69E-46
MS.gene050955	MS.gene60384	0.832183	1.09E-55	-1.69E-46
MS.gene051003	MS.gene60384	0.815206	1.04E-51	-1.69E-46
MS.gene051154	MS.gene60384	0.835452	1.66E-56	-1.69E-46
MS.gene051343	MS.gene60384	0.821702	3.51E-53	-1.69E-46
MS.gene051597	MS.gene60384	0.824746	6.83E-54	-1.69E-46
MS.gene051676	MS.gene60384	0.800564	1.36E-48	-1.69E-46
MS.gene051699	MS.gene60384	0.877	8.92E-69	-1.69E-46
MS.gene05188	MS.gene60384	0.81282	3.50E-51	-1.69E-46
MS.gene051975	MS.gene60384	0.850796	1.35E-60	-1.69E-46
MS.gene052072	MS.gene60384	0.806624	7.52E-50	-1.69E-46
MS.gene052108	MS.gene60384	0.80283	4.66E-49	-1.69E-46
MS.gene052533	MS.gene60384	0.82817	1.04E-54	-1.69E-46
MS.gene052685	MS.gene60384	0.832616	8.54E-56	-1.69E-46
MS.gene052793	MS.gene60384	0.817737	2.82E-52	-1.69E-46
MS.gene052954	MS.gene60384	0.823177	1.59E-53	-1.69E-46
MS.gene053006	MS.gene60384	0.84299	1.84E-58	-1.69E-46
MS.gene053045	MS.gene60384	0.816632	5.00E-52	-1.69E-46
MS.gene053058	MS.gene60384	0.805267	1.45E-49	-1.69E-46
MS.gene053189	MS.gene60384	0.802742	4.86E-49	-1.69E-46
MS.gene053272	MS.gene60384	-0.80438	2.22E-49	-1.69E-46
MS.gene053298	MS.gene60384	0.841365	4.97E-58	-1.69E-46
MS.gene053340	MS.gene60384	0.81531	9.87E-52	-1.69E-46
MS.gene053401	MS.gene60384	0.810456	1.14E-50	-1.69E-46
MS.gene053564	MS.gene60384	0.817161	3.81E-52	-1.69E-46
MS.gene053879	MS.gene60384	0.828474	8.81E-55	-1.69E-46
MS.gene053931	MS.gene60384	0.813973	1.95E-51	-1.69E-46
MS.gene053963	MS.gene60384	0.882851	7.36E-71	-1.69E-46
MS.gene054222	MS.gene60384	0.844087	9.40E-59	-1.69E-46
MS.gene054403	MS.gene60384	0.825302	5.05E-54	-1.69E-46
MS.gene05469	MS.gene60384	0.843516	1.34E-58	-1.69E-46
MS.gene054892	MS.gene60384	0.801654	8.13E-49	-1.69E-46
MS.gene054893	MS.gene60384	0.812261	4.63E-51	-1.69E-46
MS.gene054957	MS.gene60384	0.848257	6.88E-60	-1.69E-46
MS.gene055150	MS.gene60384	0.846843	1.68E-59	-1.69E-46
MS.gene05548	MS.gene60384	0.825197	5.35E-54	-1.69E-46
MS.gene055555	MS.gene60384	0.803033	4.23E-49	-1.69E-46
MS.gene055801	MS.gene60384	0.815326	9.79E-52	-1.69E-46
MS.gene055841	MS.gene60384	0.832283	1.03E-55	-1.69E-46
MS.gene056071	MS.gene60384	0.813625	2.33E-51	-1.69E-46
MS.gene056699	MS.gene60384	0.823231	1.55E-53	-1.69E-46
MS.gene056776	MS.gene60384	0.822076	2.87E-53	-1.69E-46
MS.gene05689	MS.gene60384	0.819841	9.40E-53	-1.69E-46
MS.gene056986	MS.gene60384	0.871176	8.34E-67	-1.69E-46
MS.gene057102	MS.gene60384	0.862494	4.87E-64	-1.69E-46
MS.gene057155	MS.gene60384	0.802635	5.11E-49	-1.69E-46
MS.gene057208	MS.gene60384	0.830666	2.58E-55	-1.69E-46
MS.gene057392	MS.gene60384	0.809656	1.70E-50	-1.69E-46
MS.gene057622	MS.gene60384	0.825071	5.73E-54	-1.69E-46
MS.gene057694	MS.gene60384	0.801337	9.44E-49	-1.69E-46
MS.gene057705	MS.gene60384	0.802341	5.88E-49	-1.69E-46
MS.gene057893	MS.gene60384	-0.800133	1.66E-48	-1.69E-46
MS.gene057999	MS.gene60384	0.869665	2.61E-66	-1.69E-46
MS.gene058008	MS.gene60384	0.823633	1.25E-53	-1.69E-46
MS.gene058074	MS.gene60384	0.813473	2.51E-51	-1.69E-46
MS.gene058159	MS.gene60384	0.859476	4.03E-63	-1.69E-46
MS.gene058279	MS.gene60384	0.809958	1.46E-50	-1.69E-46
MS.gene058592	MS.gene60384	0.830734	2.49E-55	-1.69E-46
MS.gene058781	MS.gene60384	0.811439	7.00E-51	-1.69E-46
MS.gene058783	MS.gene60384	0.809838	1.55E-50	-1.69E-46
MS.gene05878	MS.gene60384	0.808469	3.05E-50	-1.69E-46
MS.gene059146	MS.gene60384	0.855028	8.31E-62	-1.69E-46
MS.gene059360	MS.gene60384	0.804291	2.32E-49	-1.69E-46
MS.gene05952	MS.gene60384	0.855749	5.12E-62	-1.69E-46
MS.gene059830	MS.gene60384	0.812549	4.01E-51	-1.69E-46
MS.gene05985	MS.gene60384	-0.878024	3.92E-69	-1.69E-46
MS.gene059901	MS.gene60384	-0.848758	5.00E-60	-1.69E-46
MS.gene059935	MS.gene60384	0.804508	2.09E-49	-1.69E-46
MS.gene06011	MS.gene60384	0.824486	7.87E-54	-1.69E-46
MS.gene06018	MS.gene60384	0.808887	2.48E-50	-1.69E-46
MS.gene060244	MS.gene60384	0.842621	2.31E-58	-1.69E-46
MS.gene060259	MS.gene60384	0.818098	2.34E-52	-1.69E-46
MS.gene060365	MS.gene60384	0.830166	3.42E-55	-1.69E-46
MS.gene060412	MS.gene60384	0.803593	3.24E-49	-1.69E-46
MS.gene060527	MS.gene60384	0.802546	5.33E-49	-1.69E-46
MS.gene060763	MS.gene60384	0.811202	7.88E-51	-1.69E-46
MS.gene060933	MS.gene60384	0.802653	5.07E-49	-1.69E-46
MS.gene060935	MS.gene60384	0.847204	1.34E-59	-1.69E-46
MS.gene060937	MS.gene60384	0.851373	9.26E-61	-1.69E-46
MS.gene061243	MS.gene60384	0.806267	8.94E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene60384.t1	MTR_4g098710	93.827	81	5	0	1	81	1	81	2.42e-40	127

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 13 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGAATTCAGAATCTTATC+TGG	0.320719	8.1:-23994599	None:intergenic
GTGATCAGGATGAACAGTTT+AGG	0.424887	8.1:+23994669	MS.gene60384:CDS
TGTTCATCCTGATCACAGTT+TGG	0.447960	8.1:-23994662	None:intergenic
TGTGTTGCCAAACTGTGATC+AGG	0.505518	8.1:+23994655	MS.gene60384:CDS
TCACTAGACTCCTTCTTGCT+CGG	0.520514	8.1:-23994533	None:intergenic
AAGATCGGATCGATTGCAAT+GGG	0.546672	8.1:+23994734	MS.gene60384:CDS
TCTCAGAGCAAGAAATCAGA+TGG	0.548303	8.1:+23994629	MS.gene60384:CDS
CAAGATCGGATCGATTGCAA+TGG	0.580943	8.1:+23994733	MS.gene60384:CDS
GAATCAACTGATGTCAAGAT+CGG	0.588286	8.1:+23994719	MS.gene60384:CDS
CAAGAAGGAGTCTAGTGAAG+TGG	0.591426	8.1:+23994538	MS.gene60384:CDS
TAGCAAGTCACCGAGCAAGA+AGG	0.600583	8.1:+23994523	MS.gene60384:CDS
CTCAGAGCAAGAAATCAGAT+GGG	0.605996	8.1:+23994630	MS.gene60384:CDS
TCAGAGCAAGAAATCAGATG+GGG	0.702066	8.1:+23994631	MS.gene60384:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TTTGAATTCAGAATCTTATC+TGG	-	chr8.1:23994602-23994621	None:intergenic	25.0%
	GAATCAACTGATGTCAAGAT+CGG	+	chr8.1:23994719-23994738	MS.gene60384:CDS	35.0%
	AAGATCGGATCGATTGCAAT+GGG	+	chr8.1:23994734-23994753	MS.gene60384:CDS	40.0%
	CTCAGAGCAAGAAATCAGAT+GGG	+	chr8.1:23994630-23994649	MS.gene60384:CDS	40.0%
	GTGATCAGGATGAACAGTTT+AGG	+	chr8.1:23994669-23994688	MS.gene60384:CDS	40.0%
	TCAGAGCAAGAAATCAGATG+GGG	+	chr8.1:23994631-23994650	MS.gene60384:CDS	40.0%
	TCTCAGAGCAAGAAATCAGA+TGG	+	chr8.1:23994629-23994648	MS.gene60384:CDS	40.0%
	TGTTCATCCTGATCACAGTT+TGG	-	chr8.1:23994665-23994684	None:intergenic	40.0%
	CAAGAAGGAGTCTAGTGAAG+TGG	+	chr8.1:23994538-23994557	MS.gene60384:CDS	45.0%
	CAAGATCGGATCGATTGCAA+TGG	+	chr8.1:23994733-23994752	MS.gene60384:CDS	45.0%
	TCACTAGACTCCTTCTTGCT+CGG	-	chr8.1:23994536-23994555	None:intergenic	45.0%
	TGTGTTGCCAAACTGTGATC+AGG	+	chr8.1:23994655-23994674	MS.gene60384:CDS	45.0%
	TAGCAAGTCACCGAGCAAGA+AGG	+	chr8.1:23994523-23994542	MS.gene60384:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	23994518	23994763	23994518	ID=MS.gene60384
chr8.1	mRNA	23994518	23994763	23994518	ID=MS.gene60384.t1;Parent=MS.gene60384
chr8.1	exon	23994518	23994763	23994518	ID=MS.gene60384.t1.exon1;Parent=MS.gene60384.t1
chr8.1	CDS	23994518	23994763	23994518	ID=cds.MS.gene60384.t1;Parent=MS.gene60384.t1

Gene Sequence	>MS.gene60384 ATGGATAGCAAGTCACCGAGCAAGAAGGAGTCTAGTGAAGTGGCAGCACGCGAGTCGCTTATTGCTATTTCTAACTCTTCACCAGATAAGATTCTGAATTCAAATTCTGTTTCTCAGAGCAAGAAATCAGATGGGGCTGTGTTGCCAAACTGTGATCAGGATGAACAGTTTAGGTCTGAACTGATTTCAATTTCGTATGCTGAATCAACTGATGTCAAGATCGGATCGATTGCAATGGGAGTCTAA
Protein sequence	>MS.gene60384.t1 MDSKSPSKKESSEVAARESLIAISNSSPDKILNSNSVSQSKKSDGAVLPNCDQDEQFRSELISISYAESTDVKIGSIAMGV