Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85298.t1 | XP_024632340.1 | 96.9 | 161 | 5 | 0 | 1 | 161 | 1 | 161 | 7.30E-82 | 313.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85298.t1 | Q9SX65 | 63.5 | 156 | 55 | 1 | 6 | 161 | 3 | 156 | 1.7e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85298.t1 | I3S426 | 96.9 | 161 | 5 | 0 | 1 | 161 | 1 | 161 | 5.2e-82 | 313.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene85298 | -0.802412 | 5.68E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene85298 | -0.817948 | 2.53E-52 | -1.69E-46 |
| MS.gene049259 | MS.gene85298 | 0.833376 | 5.53E-56 | -1.69E-46 |
| MS.gene049281 | MS.gene85298 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene85298 | -0.819893 | 9.15E-53 | -1.69E-46 |
| MS.gene049483 | MS.gene85298 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene85298 | 0.845595 | 3.68E-59 | -1.69E-46 |
| MS.gene049634 | MS.gene85298 | 0.824388 | 8.30E-54 | -1.69E-46 |
| MS.gene050082 | MS.gene85298 | 0.856464 | 3.16E-62 | -1.69E-46 |
| MS.gene050173 | MS.gene85298 | 0.822399 | 2.42E-53 | -1.69E-46 |
| MS.gene050216 | MS.gene85298 | -0.832545 | 8.89E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene85298 | -0.816894 | 4.37E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene85298 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene85298 | 0.857145 | 1.99E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene85298 | -0.808099 | 3.66E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene85298 | -0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene85298 | -0.838006 | 3.72E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene85298 | -0.810356 | 1.20E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene85298 | -0.82827 | 9.87E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene85298 | -0.825496 | 4.54E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene85298 | 0.842887 | 1.96E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene85298 | -0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene85298 | 0.818382 | 2.02E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene85298 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene051127 | MS.gene85298 | 0.853333 | 2.56E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene85298 | 0.850148 | 2.05E-60 | -1.69E-46 |
| MS.gene051364 | MS.gene85298 | 0.83114 | 1.98E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene85298 | 0.818656 | 1.75E-52 | -1.69E-46 |
| MS.gene051367 | MS.gene85298 | 0.81646 | 5.47E-52 | -1.69E-46 |
| MS.gene051410 | MS.gene85298 | 0.820449 | 6.82E-53 | -1.69E-46 |
| MS.gene051632 | MS.gene85298 | 0.808231 | 3.43E-50 | -1.69E-46 |
| MS.gene051863 | MS.gene85298 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene85298 | 0.824228 | 9.04E-54 | -1.69E-46 |
| MS.gene052089 | MS.gene85298 | 0.803258 | 3.80E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene85298 | -0.810247 | 1.27E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene85298 | -0.816911 | 4.33E-52 | -1.69E-46 |
| MS.gene052802 | MS.gene85298 | 0.814368 | 1.60E-51 | -1.69E-46 |
| MS.gene052805 | MS.gene85298 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene053069 | MS.gene85298 | 0.802582 | 5.24E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene85298 | 0.890054 | 1.39E-73 | -1.69E-46 |
| MS.gene053488 | MS.gene85298 | 0.839999 | 1.13E-57 | -1.69E-46 |
| MS.gene053561 | MS.gene85298 | 0.861889 | 7.47E-64 | -1.69E-46 |
| MS.gene053826 | MS.gene85298 | 0.821533 | 3.84E-53 | -1.69E-46 |
| MS.gene054054 | MS.gene85298 | 0.801669 | 8.07E-49 | -1.69E-46 |
| MS.gene054056 | MS.gene85298 | 0.820929 | 5.29E-53 | -1.69E-46 |
| MS.gene054616 | MS.gene85298 | 0.826236 | 3.03E-54 | -1.69E-46 |
| MS.gene054708 | MS.gene85298 | 0.821319 | 4.30E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene85298 | -0.804452 | 2.15E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene85298 | 0.826693 | 2.36E-54 | -1.69E-46 |
| MS.gene055154 | MS.gene85298 | 0.866986 | 1.91E-65 | -1.69E-46 |
| MS.gene055202 | MS.gene85298 | 0.833279 | 5.84E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene85298 | -0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene85298 | -0.812661 | 3.79E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene85298 | 0.843111 | 1.71E-58 | -1.69E-46 |
| MS.gene056224 | MS.gene85298 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene056310 | MS.gene85298 | 0.801579 | 8.42E-49 | -1.69E-46 |
| MS.gene056311 | MS.gene85298 | 0.854986 | 8.54E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene85298 | -0.823047 | 1.71E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene85298 | -0.80579 | 1.13E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene85298 | 0.832772 | 7.81E-56 | -1.69E-46 |
| MS.gene057014 | MS.gene85298 | 0.842118 | 3.14E-58 | -1.69E-46 |
| MS.gene057549 | MS.gene85298 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene85298 | 0.830081 | 3.59E-55 | -1.69E-46 |
| MS.gene058093 | MS.gene85298 | 0.803183 | 3.94E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene85298 | 0.855013 | 8.39E-62 | -1.69E-46 |
| MS.gene058108 | MS.gene85298 | 0.830256 | 3.25E-55 | -1.69E-46 |
| MS.gene058109 | MS.gene85298 | 0.855713 | 5.25E-62 | -1.69E-46 |
| MS.gene058111 | MS.gene85298 | 0.861883 | 7.50E-64 | -1.69E-46 |
| MS.gene058117 | MS.gene85298 | 0.835375 | 1.74E-56 | -1.69E-46 |
| MS.gene058157 | MS.gene85298 | -0.80405 | 2.60E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene85298 | 0.88003 | 7.68E-70 | -1.69E-46 |
| MS.gene058173 | MS.gene85298 | 0.879908 | 8.48E-70 | -1.69E-46 |
| MS.gene058175 | MS.gene85298 | 0.884791 | 1.42E-71 | -1.69E-46 |
| MS.gene058268 | MS.gene85298 | 0.826284 | 2.95E-54 | -1.69E-46 |
| MS.gene058269 | MS.gene85298 | 0.82628 | 2.96E-54 | -1.69E-46 |
| MS.gene058493 | MS.gene85298 | 0.877716 | 5.03E-69 | -1.69E-46 |
| MS.gene058494 | MS.gene85298 | 0.871182 | 8.30E-67 | -1.69E-46 |
| MS.gene058496 | MS.gene85298 | 0.830082 | 3.59E-55 | -1.69E-46 |
| MS.gene058603 | MS.gene85298 | 0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene85298 | 0.809467 | 1.87E-50 | -1.69E-46 |
| MS.gene05884 | MS.gene85298 | 0.813795 | 2.14E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene85298 | -0.832377 | 9.79E-56 | -1.69E-46 |
| MS.gene059037 | MS.gene85298 | 0.807784 | 4.27E-50 | -1.69E-46 |
| MS.gene059038 | MS.gene85298 | 0.814802 | 1.28E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene85298 | 0.830594 | 2.69E-55 | -1.69E-46 |
| MS.gene059223 | MS.gene85298 | 0.823218 | 1.56E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene85298 | 0.82787 | 1.23E-54 | -1.69E-46 |
| MS.gene059694 | MS.gene85298 | 0.820525 | 6.55E-53 | -1.69E-46 |
| MS.gene059697 | MS.gene85298 | 0.811411 | 7.09E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene85298 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene85298 | -0.83904 | 2.01E-57 | -1.69E-46 |
| MS.gene060595 | MS.gene85298 | 0.830603 | 2.68E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene85298 | -0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene85298 | -0.82001 | 8.60E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85298.t1 | MTR_2g045080 | 91.228 | 171 | 5 | 1 | 1 | 161 | 1 | 171 | 1.02e-112 | 317 |
| MS.gene85298.t1 | MTR_2g045050 | 77.019 | 161 | 37 | 0 | 1 | 161 | 1 | 161 | 4.32e-93 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85298.t1 | AT1G48320 | 63.462 | 156 | 55 | 1 | 6 | 161 | 3 | 156 | 1.30e-69 | 207 |
| MS.gene85298.t1 | AT5G48950 | 54.667 | 150 | 65 | 2 | 11 | 157 | 3 | 152 | 5.44e-58 | 178 |
| MS.gene85298.t1 | AT5G48950 | 60.185 | 108 | 41 | 1 | 11 | 116 | 3 | 110 | 4.35e-43 | 139 |
Find 20 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGTTGCCAAAACTATTC+AGG | 0.263280 | 2.4:-45351772 | MS.gene85298:intron |
| GATTTACCCCTTCATACATT+TGG | 0.265244 | 2.4:-45352926 | MS.gene85298:CDS |
| GTGTCATCAAACAAAGTTTC+TGG | 0.297801 | 2.4:-45352887 | MS.gene85298:CDS |
| AAAACCAAAAGCTGCTGATT+TGG | 0.309085 | 2.4:-45352948 | MS.gene85298:CDS |
| CCTCCATGAAGCACACTAAA+AGG | 0.309265 | 2.4:+45351942 | None:intergenic |
| AAATCCAAATCAGCAGCTTT+TGG | 0.333199 | 2.4:+45352944 | None:intergenic |
| ATTTACCCCTTCATACATTT+GGG | 0.334094 | 2.4:-45352925 | MS.gene85298:CDS |
| TGCATACTTCTTTAGCATAT+TGG | 0.339467 | 2.4:+45351115 | None:intergenic |
| AGCATGCACCTGAATAGTTT+TGG | 0.351762 | 2.4:+45351764 | None:intergenic |
| TGTGGGTATAAAAGAGTTGC+TGG | 0.445165 | 2.4:-45351867 | MS.gene85298:CDS |
| GCTGAAGCTCTTGCAAGTAT+TGG | 0.487992 | 2.4:-45351903 | MS.gene85298:CDS |
| AGGTGTGGGATGTGAAAATC+TGG | 0.507075 | 2.4:-45351238 | MS.gene85298:CDS |
| ACTCAAACCCAAATGTATGA+AGG | 0.525757 | 2.4:+45352918 | None:intergenic |
| TTGGAGCACATGTTGCTTGT+GGG | 0.528993 | 2.4:-45351884 | MS.gene85298:CDS |
| CTCAAACCCAAATGTATGAA+GGG | 0.530132 | 2.4:+45352919 | None:intergenic |
| CATTTGAAATCAGCAATGCT+TGG | 0.536764 | 2.4:-45351825 | MS.gene85298:CDS |
| AGTCACTGAAAAGTGTTGCC+AGG | 0.553880 | 2.4:-45352855 | MS.gene85298:intron |
| GGAGGACCATCAATCATCAT+CGG | 0.605735 | 2.4:-45352972 | MS.gene85298:CDS |
| ATTGGAGCACATGTTGCTTG+TGG | 0.616187 | 2.4:-45351885 | MS.gene85298:CDS |
| TCAAACCCAAATGTATGAAG+GGG | 0.634737 | 2.4:+45352920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAGAATTTATATAAA+TGG | + | chr2.4:45352474-45352493 | None:intergenic | 10.0% |
| !! | AATAATTGTTATAAGAATTA+AGG | + | chr2.4:45351720-45351739 | None:intergenic | 10.0% |
| !! | ATAATAAAATAAATGATAGT+AGG | - | chr2.4:45351490-45351509 | MS.gene85298:intron | 10.0% |
| !! | ATAATTGTTATAAGAATTAA+GGG | + | chr2.4:45351719-45351738 | None:intergenic | 10.0% |
| !! | ATTTATATAAATTCTCTTAT+TGG | - | chr2.4:45352473-45352492 | MS.gene85298:intron | 10.0% |
| !!! | ATATCATCTCATATTTATTT+TGG | - | chr2.4:45352564-45352583 | MS.gene85298:intron | 15.0% |
| !! | AAAAATTTCAACACAACATT+CGG | + | chr2.4:45352762-45352781 | None:intergenic | 20.0% |
| !! | ACGAAAAATTATGAAAACAA+AGG | + | chr2.4:45351257-45351276 | None:intergenic | 20.0% |
| !! | ATAAATGATAGTAGGTATTA+TGG | - | chr2.4:45351498-45351517 | MS.gene85298:intron | 20.0% |
| !! | ATATATGAACAAGAAAAAGT+AGG | - | chr2.4:45352082-45352101 | MS.gene85298:intron | 20.0% |
| !! | ATCATGATTAGTATAATCAT+TGG | + | chr2.4:45352647-45352666 | None:intergenic | 20.0% |
| !! | CGAAAAATTATGAAAACAAA+GGG | + | chr2.4:45351256-45351275 | None:intergenic | 20.0% |
| !! | CGAATTCTGATTTAAATAAT+TGG | + | chr2.4:45352369-45352388 | None:intergenic | 20.0% |
| !! | TTCTGATTTAAATAATTGGT+CGG | + | chr2.4:45352365-45352384 | None:intergenic | 20.0% |
| !!! | ACTTTGAGAAAAATATAAAG+AGG | + | chr2.4:45352342-45352361 | None:intergenic | 20.0% |
| !!! | TTACTTGCTTACATTTTTTT+GGG | - | chr2.4:45352780-45352799 | MS.gene85298:intron | 20.0% |
| !!! | TTTACTTGCTTACATTTTTT+TGG | - | chr2.4:45352779-45352798 | MS.gene85298:intron | 20.0% |
| ! | AATTAGGAGTGATTTGATAT+TGG | - | chr2.4:45352106-45352125 | MS.gene85298:intron | 25.0% |
| ! | ACAAGAAAAAGTAGGTAATT+AGG | - | chr2.4:45352090-45352109 | MS.gene85298:intron | 25.0% |
| ! | CACATAAAGATAAATCGTTT+GGG | + | chr2.4:45352404-45352423 | None:intergenic | 25.0% |
| ! | TCACATAAAGATAAATCGTT+TGG | + | chr2.4:45352405-45352424 | None:intergenic | 25.0% |
| ! | TTGAAGACAATATCAGTAAT+TGG | - | chr2.4:45352439-45352458 | MS.gene85298:intron | 25.0% |
| ! | TTGAGTATGTTACATAGTTA+TGG | - | chr2.4:45352026-45352045 | MS.gene85298:intron | 25.0% |
| !! | TCATAATTTTTCGTCTCTTA+GGG | - | chr2.4:45351263-45351282 | MS.gene85298:intron | 25.0% |
| !! | TTCATAATTTTTCGTCTCTT+AGG | - | chr2.4:45351262-45351281 | MS.gene85298:intron | 25.0% |
| !!! | CTCATATTTATTTTGGTACT+TGG | - | chr2.4:45352571-45352590 | MS.gene85298:intron | 25.0% |
| !!! | TACTTGCTTACATTTTTTTG+GGG | - | chr2.4:45352781-45352800 | MS.gene85298:intron | 25.0% |
| AAACATGAAGGAAAGATTGA+AGG | + | chr2.4:45351678-45351697 | None:intergenic | 30.0% | |
| AATTAAGCACATATACTCCT+TGG | - | chr2.4:45351760-45351779 | MS.gene85298:intron | 30.0% | |
| ACAATATCAGTAATTGGCTA+TGG | - | chr2.4:45352445-45352464 | MS.gene85298:intron | 30.0% | |
| ATTTACCCCTTCATACATTT+GGG | - | chr2.4:45351155-45351174 | MS.gene85298:CDS | 30.0% | |
| CTCAAGTCATTAATGAACTT+CGG | + | chr2.4:45352704-45352723 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr2.4:45351831-45351850 | MS.gene85298:CDS | 30.0% | |
| GTAAGAGGAAAGATTGTTAA+AGG | - | chr2.4:45351323-45351342 | MS.gene85298:intron | 30.0% | |
| TAGTGAAAGTGAATAGAAAG+TGG | - | chr2.4:45351404-45351423 | MS.gene85298:intron | 30.0% | |
| TGCATACTTCTTTAGCATAT+TGG | + | chr2.4:45352968-45352987 | None:intergenic | 30.0% | |
| ! | ATAAGAATTAAGGGTGTGTT+TGG | + | chr2.4:45351710-45351729 | None:intergenic | 30.0% |
| ! | GTTAAAGGAAAGAAAGTATG+AGG | - | chr2.4:45351338-45351357 | MS.gene85298:intron | 30.0% |
| !!! | ATAGTTTTGGCAACACTTAA+AGG | + | chr2.4:45352306-45352325 | None:intergenic | 30.0% |
| !!! | TAGTTTTGGCAACACTTAAA+GGG | + | chr2.4:45352305-45352324 | None:intergenic | 30.0% |
| AAAGAGACATGATCATGTGT+TGG | - | chr2.4:45351882-45351901 | MS.gene85298:CDS | 35.0% | |
| AAAGATTGAAGGTGGAAAGA+AGG | + | chr2.4:45351667-45351686 | None:intergenic | 35.0% | |
| ACATGATCATGTCTAATCCA+AGG | + | chr2.4:45351780-45351799 | None:intergenic | 35.0% | |
| ACTCAAACCCAAATGTATGA+AGG | + | chr2.4:45351165-45351184 | None:intergenic | 35.0% | |
| ATCTTTCCTCTCACTTTCTT+TGG | + | chr2.4:45351302-45351321 | None:intergenic | 35.0% | |
| CTCAAACCCAAATGTATGAA+GGG | + | chr2.4:45351164-45351183 | None:intergenic | 35.0% | |
| GAAAGTGAATAGAAAGTGGA+AGG | - | chr2.4:45351408-45351427 | MS.gene85298:intron | 35.0% | |
| GATTTACCCCTTCATACATT+TGG | - | chr2.4:45351154-45351173 | MS.gene85298:CDS | 35.0% | |
| GTGTCATCAAACAAAGTTTC+TGG | - | chr2.4:45351193-45351212 | MS.gene85298:CDS | 35.0% | |
| TCAAACCCAAATGTATGAAG+GGG | + | chr2.4:45351163-45351182 | None:intergenic | 35.0% | |
| TGCATAAAATATGCAAGGTC+CGG | - | chr2.4:45351836-45351855 | MS.gene85298:CDS | 35.0% | |
| ! | AAAACCAAAAGCTGCTGATT+TGG | - | chr2.4:45351132-45351151 | MS.gene85298:CDS | 35.0% |
| ! | AAATCCAAATCAGCAGCTTT+TGG | + | chr2.4:45351139-45351158 | None:intergenic | 35.0% |
| ! | AAGTGTTGCCAAAACTATTC+AGG | - | chr2.4:45352308-45352327 | MS.gene85298:intron | 35.0% |
| ! | AATTAAGGGTGTGTTTGGTT+GGG | + | chr2.4:45351705-45351724 | None:intergenic | 35.0% |
| ! | ACTTTTCAGTGACTTGAAGA+TGG | + | chr2.4:45351219-45351238 | None:intergenic | 35.0% |
| ! | ATGATCATGTCTCTTTTTGG+TGG | + | chr2.4:45351878-45351897 | None:intergenic | 35.0% |
| ! | CACATGATCATGTCTCTTTT+TGG | + | chr2.4:45351881-45351900 | None:intergenic | 35.0% |
| ! | CATTTGAAATCAGCAATGCT+TGG | - | chr2.4:45352255-45352274 | MS.gene85298:intron | 35.0% |
| ! | GAAAGTATGAGGAAAGTGAA+TGG | - | chr2.4:45351349-45351368 | MS.gene85298:intron | 35.0% |
| ! | GTTCTGTTTTGTGAGTTTGA+AGG | + | chr2.4:45352877-45352896 | None:intergenic | 35.0% |
| ! | TGAGCTTAGTTCAGTTGATA+TGG | - | chr2.4:45351809-45351828 | MS.gene85298:CDS | 35.0% |
| !! | AGTTTTGGCAACACTTAAAG+GGG | + | chr2.4:45352304-45352323 | None:intergenic | 35.0% |
| !! | ATTTTGGTACTTGGTTCCAA+GGG | - | chr2.4:45352580-45352599 | MS.gene85298:intron | 35.0% |
| !! | GGAAAGTGAGATGATTTGTT+AGG | - | chr2.4:45351370-45351389 | MS.gene85298:intron | 35.0% |
| !! | TCTTTTGCATAATCTGGAAC+AGG | + | chr2.4:45352940-45352959 | None:intergenic | 35.0% |
| !!! | TATTTTGGTACTTGGTTCCA+AGG | - | chr2.4:45352579-45352598 | MS.gene85298:intron | 35.0% |
| !!! | TGCTTACATTTTTTTGGGGT+TGG | - | chr2.4:45352785-45352804 | MS.gene85298:intron | 35.0% |
| AAAATGTTTCCGCACACCAT+AGG | + | chr2.4:45351563-45351582 | None:intergenic | 40.0% | |
| AACAGCCTAAGAAAGAGAAG+TGG | + | chr2.4:45351614-45351633 | None:intergenic | 40.0% | |
| ACACGAACACCAACAAAACA+CGG | + | chr2.4:45352006-45352025 | None:intergenic | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | - | chr2.4:45351838-45351857 | MS.gene85298:CDS | 40.0% | |
| CATGAAGGAAAGATTGAAGG+TGG | + | chr2.4:45351675-45351694 | None:intergenic | 40.0% | |
| GATATGTGTCAGTATCACGT+CGG | + | chr2.4:45351927-45351946 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | - | chr2.4:45351837-45351856 | MS.gene85298:CDS | 40.0% | |
| GTGAGAGGAAAGATTGTAAG+AGG | - | chr2.4:45351308-45351327 | MS.gene85298:intron | 40.0% | |
| TCCATCCACTTCTCTTTCTT+AGG | - | chr2.4:45351606-45351625 | MS.gene85298:intron | 40.0% | |
| TGAAAACAAAGGGTTTGACC+TGG | + | chr2.4:45351246-45351265 | None:intergenic | 40.0% | |
| TGTGGGTATAAAAGAGTTGC+TGG | - | chr2.4:45352213-45352232 | MS.gene85298:intron | 40.0% | |
| TTACACTTTGATCCTGTTGC+AGG | - | chr2.4:45352822-45352841 | MS.gene85298:intron | 40.0% | |
| TTGAAGGTGGAAAGAAGGAA+CGG | + | chr2.4:45351662-45351681 | None:intergenic | 40.0% | |
| ! | AGCATGCACCTGAATAGTTT+TGG | + | chr2.4:45352319-45352338 | None:intergenic | 40.0% |
| ! | ATGGTGTGCGGAAACATTTT+TGG | - | chr2.4:45351563-45351582 | MS.gene85298:intron | 40.0% |
| ! | CTTTTAGTGTGCTTCATGGA+GGG | - | chr2.4:45352139-45352158 | MS.gene85298:intron | 40.0% |
| ! | GAATTAAGGGTGTGTTTGGT+TGG | + | chr2.4:45351706-45351725 | None:intergenic | 40.0% |
| ! | GCAGCTTCTTTTGCATAATC+TGG | + | chr2.4:45352946-45352965 | None:intergenic | 40.0% |
| ! | GTTTTGCCGATGATGATTGA+TGG | + | chr2.4:45351117-45351136 | None:intergenic | 40.0% |
| ! | TGTCTATGTCCGTGTTTTGT+TGG | - | chr2.4:45351994-45352013 | MS.gene85298:intron | 40.0% |
| ! | TTTTAGTGTGCTTCATGGAG+GGG | - | chr2.4:45352140-45352159 | MS.gene85298:intron | 40.0% |
| !! | AAGTGGATGGATTGTTTGCA+TGG | + | chr2.4:45351597-45351616 | None:intergenic | 40.0% |
| !! | AGTGGATGGATTGTTTGCAT+GGG | + | chr2.4:45351596-45351615 | None:intergenic | 40.0% |
| !! | ATCATGTCTCTTTTTGGTGG+TGG | + | chr2.4:45351875-45351894 | None:intergenic | 40.0% |
| ACTTTCTGTCCTATGGTGTG+CGG | - | chr2.4:45351551-45351570 | MS.gene85298:intron | 45.0% | |
| AGGTGTGGGATGTGAAAATC+TGG | - | chr2.4:45352842-45352861 | MS.gene85298:intron | 45.0% | |
| CACACCATAGGACAGAAAGT+GGG | + | chr2.4:45351551-45351570 | None:intergenic | 45.0% | |
| CCTCCATGAAGCACACTAAA+AGG | + | chr2.4:45352141-45352160 | None:intergenic | 45.0% | |
| GCCTAAGAAAGAGAAGTGGA+TGG | + | chr2.4:45351610-45351629 | None:intergenic | 45.0% | |
| GCTGAAGCTCTTGCAAGTAT+TGG | - | chr2.4:45352177-45352196 | MS.gene85298:intron | 45.0% | |
| GGAGGACCATCAATCATCAT+CGG | - | chr2.4:45351108-45351127 | MS.gene85298:CDS | 45.0% | |
| GGATCACCAAAGAAAGTGAG+AGG | - | chr2.4:45351293-45351312 | MS.gene85298:intron | 45.0% | |
| TCAACTGAACTAAGCTCACG+AGG | + | chr2.4:45351807-45351826 | None:intergenic | 45.0% | |
| TCCAAACTGAGGAAGGATGT+TGG | - | chr2.4:45351633-45351652 | MS.gene85298:intron | 45.0% | |
| TCCAACATCCTTCCTCAGTT+TGG | + | chr2.4:45351637-45351656 | None:intergenic | 45.0% | |
| TCTTAGGCTGTTCCAAACTG+AGG | - | chr2.4:45351622-45351641 | MS.gene85298:intron | 45.0% | |
| TTCGTCTCTTAGGGTGTGTT+TGG | - | chr2.4:45351272-45351291 | MS.gene85298:intron | 45.0% | |
| TTTGATCCTGTTGCAGGTGT+GGG | - | chr2.4:45352828-45352847 | MS.gene85298:intron | 45.0% | |
| ! | ATTGGAGCACATGTTGCTTG+TGG | - | chr2.4:45352195-45352214 | MS.gene85298:intron | 45.0% |
| ! | CAGCCTTTTAGTGTGCTTCA+TGG | - | chr2.4:45352135-45352154 | MS.gene85298:intron | 45.0% |
| ! | CCTTTTAGTGTGCTTCATGG+AGG | - | chr2.4:45352138-45352157 | MS.gene85298:intron | 45.0% |
| ! | TGGTTGGGCTAGAAACATGA+AGG | + | chr2.4:45351690-45351709 | None:intergenic | 45.0% |
| ! | TTGGAGCACATGTTGCTTGT+GGG | - | chr2.4:45352196-45352215 | MS.gene85298:intron | 45.0% |
| !! | AGTCACTGAAAAGTGTTGCC+AGG | - | chr2.4:45351225-45351244 | MS.gene85298:CDS | 45.0% |
| !!! | TGCGGAAACATTTTTGGCGT+GGG | - | chr2.4:45351569-45351588 | MS.gene85298:intron | 45.0% |
| !! | ATAAAATAATACTTATAAAA+GGG | + | chr2.4:45351469-45351488 | None:intergenic | 5.0% |
| !! | TATAAAATAATACTTATAAA+AGG | + | chr2.4:45351470-45351489 | None:intergenic | 5.0% |
| AGGCTGTTCCAAACTGAGGA+AGG | - | chr2.4:45351626-45351645 | MS.gene85298:intron | 50.0% | |
| CTTTGATCCTGTTGCAGGTG+TGG | - | chr2.4:45352827-45352846 | MS.gene85298:intron | 50.0% | |
| GCACACCATAGGACAGAAAG+TGG | + | chr2.4:45351552-45351571 | None:intergenic | 50.0% | |
| TCAGCCCACTTTCTGTCCTA+TGG | - | chr2.4:45351544-45351563 | MS.gene85298:intron | 50.0% | |
| TGGTACTTGGTTCCAAGGGT+TGG | - | chr2.4:45352584-45352603 | MS.gene85298:intron | 50.0% | |
| !!! | GTCTCTTTTTGGTGGTGGCA+TGG | + | chr2.4:45351870-45351889 | None:intergenic | 50.0% |
| !!! | GTGCGGAAACATTTTTGGCG+TGG | - | chr2.4:45351568-45351587 | MS.gene85298:intron | 50.0% |
| GAACATCGAGCTCCAACCCT+TGG | + | chr2.4:45352599-45352618 | None:intergenic | 55.0% | |
| TCACATCCCACACCTGCAAC+AGG | + | chr2.4:45352837-45352856 | None:intergenic | 55.0% | |
| TGGTGGCATGGTTCGAACCC+CGG | + | chr2.4:45351858-45351877 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 45351106 | 45352996 | 45351106 | ID=MS.gene85298 |
| chr2.4 | mRNA | 45351106 | 45352996 | 45351106 | ID=MS.gene85298.t1;Parent=MS.gene85298 |
| chr2.4 | exon | 45352856 | 45352996 | 45352856 | ID=MS.gene85298.t1.exon1;Parent=MS.gene85298.t1 |
| chr2.4 | CDS | 45352856 | 45352996 | 45352856 | ID=cds.MS.gene85298.t1;Parent=MS.gene85298.t1 |
| chr2.4 | exon | 45351773 | 45351964 | 45351773 | ID=MS.gene85298.t1.exon2;Parent=MS.gene85298.t1 |
| chr2.4 | CDS | 45351773 | 45351964 | 45351773 | ID=cds.MS.gene85298.t1;Parent=MS.gene85298.t1 |
| chr2.4 | exon | 45351106 | 45351258 | 45351106 | ID=MS.gene85298.t1.exon3;Parent=MS.gene85298.t1 |
| chr2.4 | CDS | 45351106 | 45351258 | 45351106 | ID=cds.MS.gene85298.t1;Parent=MS.gene85298.t1 |
| Gene Sequence |
| Protein sequence |
