Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80092.t1 | XP_003592446.2 | 97.2 | 324 | 8 | 1 | 1 | 324 | 1 | 323 | 1.60E-184 | 655.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80092.t1 | Q5NUF4 | 80.7 | 321 | 59 | 2 | 5 | 324 | 10 | 328 | 2.0e-156 | 553.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80092.t1 | G7IE27 | 97.2 | 324 | 8 | 1 | 1 | 324 | 1 | 323 | 1.1e-184 | 655.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene80092 | -0.82805 | 1.12E-54 | -1.69E-46 |
| MS.gene049259 | MS.gene80092 | 0.821228 | 4.51E-53 | -1.69E-46 |
| MS.gene049281 | MS.gene80092 | 0.812052 | 5.15E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene80092 | -0.811293 | 7.53E-51 | -1.69E-46 |
| MS.gene049483 | MS.gene80092 | 0.824983 | 6.00E-54 | -1.69E-46 |
| MS.gene049611 | MS.gene80092 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene80092 | -0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene80092 | -0.828698 | 7.78E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene80092 | -0.813406 | 2.60E-51 | -1.69E-46 |
| MS.gene050363 | MS.gene80092 | 0.855279 | 7.02E-62 | -1.69E-46 |
| MS.gene050381 | MS.gene80092 | 0.884006 | 2.77E-71 | -1.69E-46 |
| MS.gene050496 | MS.gene80092 | -0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene80092 | -0.835908 | 1.28E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene80092 | -0.820548 | 6.47E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene80092 | -0.830579 | 2.71E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene80092 | -0.833386 | 5.49E-56 | -1.69E-46 |
| MS.gene050883 | MS.gene80092 | 0.90352 | 3.19E-79 | -1.69E-46 |
| MS.gene050986 | MS.gene80092 | -0.80331 | 3.70E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene80092 | 0.822428 | 2.38E-53 | -1.69E-46 |
| MS.gene05104 | MS.gene80092 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene80092 | 0.903847 | 2.27E-79 | -1.69E-46 |
| MS.gene051138 | MS.gene80092 | 0.813008 | 3.18E-51 | -1.69E-46 |
| MS.gene051410 | MS.gene80092 | 0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene05141 | MS.gene80092 | 0.838973 | 2.09E-57 | -1.69E-46 |
| MS.gene051946 | MS.gene80092 | 0.877978 | 4.07E-69 | -1.69E-46 |
| MS.gene052089 | MS.gene80092 | 0.825361 | 4.89E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene80092 | -0.818033 | 2.42E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene80092 | -0.823773 | 1.16E-53 | -1.69E-46 |
| MS.gene052566 | MS.gene80092 | 0.831429 | 1.68E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene80092 | -0.809218 | 2.11E-50 | -1.69E-46 |
| MS.gene053069 | MS.gene80092 | 0.834952 | 2.23E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene80092 | 0.870722 | 1.18E-66 | -1.69E-46 |
| MS.gene053488 | MS.gene80092 | 0.834503 | 2.89E-56 | -1.69E-46 |
| MS.gene053549 | MS.gene80092 | 0.831078 | 2.05E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene80092 | 0.867627 | 1.19E-65 | -1.69E-46 |
| MS.gene053826 | MS.gene80092 | 0.842701 | 2.20E-58 | -1.69E-46 |
| MS.gene054054 | MS.gene80092 | 0.821829 | 3.28E-53 | -1.69E-46 |
| MS.gene054056 | MS.gene80092 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene054616 | MS.gene80092 | 0.829964 | 3.83E-55 | -1.69E-46 |
| MS.gene054708 | MS.gene80092 | 0.858086 | 1.05E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene80092 | -0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene055124 | MS.gene80092 | 0.866857 | 2.10E-65 | -1.69E-46 |
| MS.gene055139 | MS.gene80092 | 0.838906 | 2.18E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene80092 | 0.867786 | 1.06E-65 | -1.69E-46 |
| MS.gene055202 | MS.gene80092 | 0.83986 | 1.23E-57 | -1.69E-46 |
| MS.gene055362 | MS.gene80092 | -0.802773 | 4.78E-49 | -1.69E-46 |
| MS.gene055401 | MS.gene80092 | 0.817304 | 3.53E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene80092 | -0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene055549 | MS.gene80092 | 0.81765 | 2.95E-52 | -1.69E-46 |
| MS.gene055550 | MS.gene80092 | 0.822519 | 2.27E-53 | -1.69E-46 |
| MS.gene055551 | MS.gene80092 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene80092 | -0.819297 | 1.25E-52 | -1.69E-46 |
| MS.gene055942 | MS.gene80092 | 0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene056224 | MS.gene80092 | 0.805179 | 1.51E-49 | -1.69E-46 |
| MS.gene056310 | MS.gene80092 | 0.880384 | 5.74E-70 | -1.69E-46 |
| MS.gene056311 | MS.gene80092 | 0.903207 | 4.40E-79 | -1.69E-46 |
| MS.gene056313 | MS.gene80092 | 0.880895 | 3.76E-70 | -1.69E-46 |
| MS.gene056408 | MS.gene80092 | 0.837478 | 5.08E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene80092 | -0.843984 | 1.00E-58 | -1.69E-46 |
| MS.gene056530 | MS.gene80092 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene80092 | 0.863192 | 2.97E-64 | -1.69E-46 |
| MS.gene057473 | MS.gene80092 | 0.83324 | 5.97E-56 | -1.69E-46 |
| MS.gene057499 | MS.gene80092 | 0.800702 | 1.27E-48 | -1.69E-46 |
| MS.gene058068 | MS.gene80092 | 0.827933 | 1.19E-54 | -1.69E-46 |
| MS.gene058099 | MS.gene80092 | 0.83985 | 1.24E-57 | -1.69E-46 |
| MS.gene058108 | MS.gene80092 | 0.844244 | 8.52E-59 | -1.69E-46 |
| MS.gene058109 | MS.gene80092 | 0.875498 | 2.94E-68 | -1.69E-46 |
| MS.gene058111 | MS.gene80092 | 0.87945 | 1.23E-69 | -1.69E-46 |
| MS.gene058117 | MS.gene80092 | 0.80222 | 6.22E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene80092 | 0.894192 | 3.11E-75 | -1.69E-46 |
| MS.gene058173 | MS.gene80092 | 0.895453 | 9.45E-76 | -1.69E-46 |
| MS.gene058175 | MS.gene80092 | 0.897131 | 1.89E-76 | -1.69E-46 |
| MS.gene058179 | MS.gene80092 | 0.819196 | 1.32E-52 | -1.69E-46 |
| MS.gene058268 | MS.gene80092 | 0.813227 | 2.85E-51 | -1.69E-46 |
| MS.gene058269 | MS.gene80092 | 0.808107 | 3.64E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene80092 | -0.832451 | 9.38E-56 | -1.69E-46 |
| MS.gene058493 | MS.gene80092 | 0.879083 | 1.66E-69 | -1.69E-46 |
| MS.gene058494 | MS.gene80092 | 0.852982 | 3.23E-61 | -1.69E-46 |
| MS.gene058496 | MS.gene80092 | 0.821618 | 3.67E-53 | -1.69E-46 |
| MS.gene058628 | MS.gene80092 | 0.861327 | 1.11E-63 | -1.69E-46 |
| MS.gene058629 | MS.gene80092 | 0.845877 | 3.09E-59 | -1.69E-46 |
| MS.gene058630 | MS.gene80092 | 0.859008 | 5.57E-63 | -1.69E-46 |
| MS.gene058840 | MS.gene80092 | 0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene80092 | 0.837166 | 6.10E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene80092 | -0.828961 | 6.72E-55 | -1.69E-46 |
| MS.gene059037 | MS.gene80092 | 0.818222 | 2.19E-52 | -1.69E-46 |
| MS.gene059045 | MS.gene80092 | 0.827338 | 1.65E-54 | -1.69E-46 |
| MS.gene059223 | MS.gene80092 | 0.836244 | 1.05E-56 | -1.69E-46 |
| MS.gene059236 | MS.gene80092 | 0.800225 | 1.59E-48 | -1.69E-46 |
| MS.gene059367 | MS.gene80092 | -0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene80092 | 0.844579 | 6.93E-59 | -1.69E-46 |
| MS.gene059691 | MS.gene80092 | 0.817111 | 3.91E-52 | -1.69E-46 |
| MS.gene059694 | MS.gene80092 | 0.844864 | 5.80E-59 | -1.69E-46 |
| MS.gene059697 | MS.gene80092 | 0.847409 | 1.18E-59 | -1.69E-46 |
| MS.gene059865 | MS.gene80092 | -0.84416 | 8.98E-59 | -1.69E-46 |
| MS.gene059916 | MS.gene80092 | 0.824384 | 8.31E-54 | -1.69E-46 |
| MS.gene060187 | MS.gene80092 | 0.809318 | 2.01E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene80092 | -0.812256 | 4.64E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene80092 | 0.828209 | 1.02E-54 | -1.69E-46 |
| MS.gene060703 | MS.gene80092 | -0.80909 | 2.25E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene80092 | -0.820148 | 8.00E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene80092 | -0.847514 | 1.10E-59 | -1.69E-46 |
| MS.gene060982 | MS.gene80092 | -0.821315 | 4.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80092.t1 | MTR_1g105020 | 97.222 | 324 | 8 | 1 | 1 | 324 | 1 | 323 | 0.0 | 645 |
| MS.gene80092.t1 | MTR_5g005850 | 57.362 | 326 | 133 | 4 | 2 | 324 | 7 | 329 | 5.39e-137 | 392 |
| MS.gene80092.t1 | MTR_3g450680 | 53.251 | 323 | 147 | 2 | 3 | 323 | 11 | 331 | 4.17e-121 | 351 |
| MS.gene80092.t1 | MTR_5g005920 | 52.160 | 324 | 147 | 4 | 5 | 323 | 10 | 330 | 2.80e-116 | 339 |
| MS.gene80092.t1 | MTR_7g051020 | 55.152 | 330 | 136 | 6 | 1 | 323 | 1 | 325 | 5.55e-116 | 338 |
| MS.gene80092.t1 | MTR_1g104930 | 55.015 | 329 | 135 | 6 | 1 | 323 | 1 | 322 | 6.32e-110 | 323 |
| MS.gene80092.t1 | MTR_5g005900 | 50.932 | 322 | 152 | 3 | 6 | 323 | 7 | 326 | 1.75e-109 | 322 |
| MS.gene80092.t1 | MTR_8g040860 | 49.527 | 317 | 157 | 2 | 7 | 323 | 15 | 328 | 3.36e-106 | 313 |
| MS.gene80092.t1 | MTR_1g104933 | 54.403 | 318 | 136 | 5 | 6 | 323 | 8 | 316 | 3.60e-105 | 310 |
| MS.gene80092.t1 | MTR_4g086510 | 44.648 | 327 | 167 | 8 | 1 | 323 | 1 | 317 | 3.71e-92 | 277 |
| MS.gene80092.t1 | MTR_4g086480 | 43.827 | 324 | 169 | 8 | 2 | 323 | 6 | 318 | 2.14e-89 | 270 |
| MS.gene80092.t1 | MTR_4g086470 | 43.827 | 324 | 169 | 8 | 2 | 323 | 5 | 317 | 2.20e-84 | 257 |
| MS.gene80092.t1 | MTR_7g056207 | 43.385 | 325 | 170 | 8 | 3 | 323 | 35 | 349 | 6.59e-84 | 257 |
| MS.gene80092.t1 | MTR_3g101420 | 40.764 | 314 | 176 | 5 | 11 | 323 | 10 | 314 | 1.31e-82 | 253 |
| MS.gene80092.t1 | MTR_4g086540 | 44.688 | 320 | 148 | 7 | 5 | 324 | 15 | 305 | 4.08e-82 | 251 |
| MS.gene80092.t1 | MTR_1g111280 | 33.019 | 318 | 195 | 8 | 10 | 319 | 28 | 335 | 4.68e-49 | 167 |
| MS.gene80092.t1 | MTR_7g406880 | 33.636 | 330 | 190 | 11 | 15 | 323 | 28 | 349 | 1.87e-48 | 166 |
| MS.gene80092.t1 | MTR_4g050140 | 34.242 | 330 | 192 | 11 | 4 | 323 | 1 | 315 | 5.01e-47 | 161 |
| MS.gene80092.t1 | MTR_1g012430 | 33.754 | 317 | 191 | 11 | 11 | 323 | 6 | 307 | 2.71e-41 | 146 |
| MS.gene80092.t1 | MTR_7g107040 | 31.013 | 316 | 200 | 11 | 15 | 324 | 14 | 317 | 1.77e-38 | 139 |
| MS.gene80092.t1 | MTR_3g012440 | 31.447 | 318 | 191 | 10 | 6 | 304 | 5 | 314 | 5.19e-35 | 130 |
| MS.gene80092.t1 | MTR_1g102160 | 37.281 | 228 | 123 | 7 | 20 | 238 | 23 | 239 | 2.78e-33 | 125 |
| MS.gene80092.t1 | MTR_1g102170 | 33.585 | 265 | 149 | 9 | 21 | 273 | 43 | 292 | 2.77e-31 | 120 |
| MS.gene80092.t1 | MTR_8g035540 | 31.333 | 300 | 174 | 11 | 16 | 302 | 9 | 289 | 4.01e-31 | 119 |
| MS.gene80092.t1 | MTR_6g464120 | 38.919 | 185 | 101 | 4 | 21 | 203 | 29 | 203 | 1.03e-30 | 121 |
| MS.gene80092.t1 | MTR_0007s0520 | 33.054 | 239 | 140 | 8 | 18 | 248 | 23 | 249 | 1.14e-30 | 118 |
| MS.gene80092.t1 | MTR_8g035520 | 30.990 | 313 | 201 | 9 | 16 | 321 | 21 | 325 | 1.34e-30 | 118 |
| MS.gene80092.t1 | MTR_6g464510 | 31.597 | 288 | 176 | 8 | 44 | 323 | 52 | 326 | 1.43e-29 | 115 |
| MS.gene80092.t1 | MTR_1g089310 | 30.068 | 296 | 168 | 8 | 21 | 296 | 38 | 314 | 3.97e-29 | 114 |
| MS.gene80092.t1 | MTR_1g089310 | 30.068 | 296 | 168 | 8 | 21 | 296 | 54 | 330 | 4.21e-29 | 115 |
| MS.gene80092.t1 | MTR_6g065120 | 28.261 | 322 | 193 | 12 | 21 | 323 | 33 | 335 | 8.66e-28 | 110 |
| MS.gene80092.t1 | MTR_6g065270 | 27.575 | 301 | 185 | 9 | 40 | 323 | 51 | 335 | 1.45e-27 | 110 |
| MS.gene80092.t1 | MTR_6g464320 | 31.692 | 325 | 189 | 14 | 15 | 321 | 17 | 326 | 1.63e-27 | 110 |
| MS.gene80092.t1 | MTR_1g082210 | 29.530 | 298 | 167 | 9 | 21 | 296 | 38 | 314 | 5.39e-27 | 108 |
| MS.gene80092.t1 | MTR_6g065340 | 27.797 | 295 | 172 | 9 | 40 | 323 | 64 | 328 | 9.85e-27 | 108 |
| MS.gene80092.t1 | MTR_8g035500 | 32.482 | 274 | 169 | 9 | 21 | 285 | 17 | 283 | 5.22e-26 | 105 |
| MS.gene80092.t1 | MTR_6g464280 | 36.111 | 180 | 101 | 4 | 38 | 212 | 40 | 210 | 8.21e-26 | 105 |
| MS.gene80092.t1 | MTR_6g065370 | 25.938 | 320 | 202 | 10 | 21 | 323 | 32 | 333 | 1.15e-25 | 105 |
| MS.gene80092.t1 | MTR_7g093950 | 28.049 | 328 | 192 | 11 | 21 | 323 | 38 | 346 | 1.45e-25 | 105 |
| MS.gene80092.t1 | MTR_6g065430 | 26.752 | 314 | 204 | 9 | 21 | 324 | 31 | 328 | 2.69e-25 | 103 |
| MS.gene80092.t1 | MTR_6g065400 | 26.168 | 321 | 200 | 11 | 21 | 323 | 32 | 333 | 7.10e-25 | 103 |
| MS.gene80092.t1 | MTR_6g065110 | 27.414 | 321 | 196 | 12 | 21 | 323 | 33 | 334 | 1.01e-23 | 99.8 |
| MS.gene80092.t1 | MTR_6g022710 | 29.020 | 255 | 145 | 7 | 62 | 283 | 146 | 397 | 7.16e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80092.t1 | AT1G47480 | 41.796 | 323 | 174 | 5 | 1 | 323 | 1 | 309 | 4.23e-81 | 249 |
| MS.gene80092.t1 | AT2G03550 | 39.228 | 311 | 177 | 7 | 14 | 323 | 11 | 310 | 1.09e-71 | 224 |
| MS.gene80092.t1 | AT3G48700 | 36.970 | 330 | 193 | 7 | 4 | 323 | 1 | 325 | 1.59e-71 | 225 |
| MS.gene80092.t1 | AT3G48690 | 39.634 | 328 | 182 | 9 | 4 | 323 | 1 | 320 | 2.02e-71 | 224 |
| MS.gene80092.t1 | AT1G49650 | 39.117 | 317 | 179 | 8 | 13 | 324 | 66 | 373 | 8.52e-69 | 219 |
| MS.gene80092.t1 | AT1G19190 | 37.538 | 325 | 186 | 9 | 4 | 323 | 1 | 313 | 8.78e-69 | 218 |
| MS.gene80092.t1 | AT1G49640 | 37.539 | 317 | 178 | 8 | 14 | 324 | 12 | 314 | 1.97e-68 | 216 |
| MS.gene80092.t1 | AT1G49660 | 38.182 | 330 | 183 | 10 | 4 | 324 | 1 | 318 | 2.19e-63 | 204 |
| MS.gene80092.t1 | AT1G68620 | 30.793 | 328 | 188 | 13 | 11 | 323 | 26 | 329 | 7.10e-39 | 140 |
| MS.gene80092.t1 | AT5G16080 | 30.462 | 325 | 200 | 10 | 11 | 323 | 31 | 341 | 1.60e-36 | 134 |
| MS.gene80092.t1 | AT3G05120 | 30.154 | 325 | 184 | 11 | 21 | 323 | 38 | 341 | 2.31e-35 | 131 |
| MS.gene80092.t1 | AT5G06570 | 32.229 | 332 | 209 | 9 | 1 | 323 | 1 | 325 | 6.68e-35 | 130 |
| MS.gene80092.t1 | AT5G06570 | 32.229 | 332 | 209 | 9 | 1 | 323 | 1 | 325 | 6.68e-35 | 130 |
| MS.gene80092.t1 | AT5G06570 | 32.229 | 332 | 209 | 9 | 1 | 323 | 16 | 340 | 1.07e-34 | 129 |
| MS.gene80092.t1 | AT5G06570 | 32.229 | 332 | 209 | 9 | 1 | 323 | 16 | 340 | 1.07e-34 | 129 |
| MS.gene80092.t1 | AT3G63010 | 31.119 | 286 | 159 | 7 | 21 | 285 | 38 | 306 | 2.77e-32 | 123 |
| MS.gene80092.t1 | AT2G45600 | 34.266 | 286 | 157 | 10 | 21 | 296 | 21 | 285 | 1.13e-31 | 121 |
| MS.gene80092.t1 | AT5G27320 | 28.261 | 322 | 192 | 9 | 21 | 323 | 38 | 339 | 5.69e-31 | 119 |
| MS.gene80092.t1 | AT2G45610 | 29.518 | 332 | 209 | 9 | 8 | 323 | 1 | 323 | 7.01e-31 | 119 |
| MS.gene80092.t1 | AT5G62180 | 32.362 | 309 | 179 | 12 | 21 | 313 | 21 | 315 | 3.74e-30 | 117 |
| MS.gene80092.t1 | AT5G23530 | 30.323 | 310 | 191 | 11 | 21 | 323 | 35 | 326 | 6.80e-29 | 114 |
| MS.gene80092.t1 | AT3G27320 | 28.685 | 251 | 136 | 8 | 70 | 283 | 131 | 375 | 1.35e-21 | 95.1 |
| MS.gene80092.t1 | AT3G27320 | 28.571 | 252 | 137 | 8 | 69 | 283 | 162 | 407 | 1.51e-21 | 95.1 |
| MS.gene80092.t1 | AT5G14310 | 28.235 | 255 | 149 | 5 | 62 | 283 | 140 | 393 | 5.13e-21 | 93.6 |
Find 66 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAGAATTCTGAGTTTC+AGG | 0.180854 | 1.1:-75219577 | None:intergenic |
| AAGTTCTCTGTCTATTTCTT+TGG | 0.276032 | 1.1:-75218672 | None:intergenic |
| ACAAAATTCCAAACTTTCAT+AGG | 0.313695 | 1.1:-75219322 | None:intergenic |
| GGAACAGTTGAACGTTTCTT+AGG | 0.318313 | 1.1:+75218722 | MS.gene80092:CDS |
| GGCTGTTGATGCTCCTAGTT+TGG | 0.318919 | 1.1:+75219393 | MS.gene80092:CDS |
| AAAGTTCACCTATGAAAGTT+TGG | 0.319481 | 1.1:+75219314 | MS.gene80092:CDS |
| CCTGGTGATGTGAAAATTAG+AGG | 0.323872 | 1.1:+75219220 | MS.gene80092:CDS |
| TGAATACGTGCAGAGATTAA+TGG | 0.325811 | 1.1:-75218821 | None:intergenic |
| GCTCCTAGTTTGGATATTAT+TGG | 0.329779 | 1.1:+75219403 | MS.gene80092:CDS |
| CTTCCTGCTGCTTATGATGA+TGG | 0.347453 | 1.1:+75219022 | MS.gene80092:CDS |
| CCAATCTTAGTTTACTATCA+TGG | 0.355488 | 1.1:+75218878 | MS.gene80092:CDS |
| ATTTAAGAGACAGAGGGATT+TGG | 0.369398 | 1.1:+75219464 | MS.gene80092:CDS |
| TCAATCCCACCAGGTGCATC+AGG | 0.374795 | 1.1:-75219349 | None:intergenic |
| GAATACGTGCAGAGATTAAT+GGG | 0.378912 | 1.1:-75218820 | None:intergenic |
| AACTCAGAATTCTATTGATA+TGG | 0.381841 | 1.1:+75219582 | MS.gene80092:CDS |
| GTCCCTGGATCAAGAGGAAT+TGG | 0.386785 | 1.1:-75218761 | None:intergenic |
| TAACCCTTTGATCAATCCTT+TGG | 0.390755 | 1.1:+75219372 | MS.gene80092:CDS |
| TACATCGGTGGTGATACTTC+AGG | 0.391607 | 1.1:+75219142 | MS.gene80092:CDS |
| TGAGTTTGGTTGGTGAGTTT+TGG | 0.393335 | 1.1:-75218848 | None:intergenic |
| GTTGTTGATGCTGTTGTTGA+TGG | 0.412530 | 1.1:-75219077 | None:intergenic |
| TTTGATGAGACACCTGTCCC+TGG | 0.437099 | 1.1:-75218776 | None:intergenic |
| CCATGATAGTAAACTAAGAT+TGG | 0.442987 | 1.1:-75218878 | None:intergenic |
| GCAGCAGGAAGAGGGTGTTC+TGG | 0.450690 | 1.1:-75219010 | None:intergenic |
| TCAACTGATTCTGACAAAAC+CGG | 0.451108 | 1.1:-75219280 | None:intergenic |
| CAGCCAAAGGATTGATCAAA+GGG | 0.458708 | 1.1:-75219375 | None:intergenic |
| CTGCTGCTTATGATGATGGT+TGG | 0.469195 | 1.1:+75219026 | MS.gene80092:CDS |
| CTTCTCCGTGTCTACAAAGA+TGG | 0.477681 | 1.1:+75218701 | MS.gene80092:CDS |
| CCACCAATTCCTCTTGATCC+AGG | 0.478498 | 1.1:+75218758 | MS.gene80092:CDS |
| GAACCATGGTTAATCAAATA+CGG | 0.497534 | 1.1:+75219103 | MS.gene80092:CDS |
| GCACTTCTTCGTGTTGGTAA+TGG | 0.499383 | 1.1:+75219184 | MS.gene80092:CDS |
| GTGGAACTTGTTCATGTTGA+AGG | 0.503646 | 1.1:+75219526 | MS.gene80092:CDS |
| TATGATGCTGTTAAGAAAAG+TGG | 0.520687 | 1.1:+75219490 | MS.gene80092:CDS |
| ATGAGAAGTGACCCATTTGA+GGG | 0.529133 | 1.1:-75219053 | None:intergenic |
| CACAATGCACTTCTTCGTGT+TGG | 0.532810 | 1.1:+75219178 | MS.gene80092:CDS |
| AATGAGAAGTGACCCATTTG+AGG | 0.536918 | 1.1:-75219054 | None:intergenic |
| TCATCATAAGCAGCAGGAAG+AGG | 0.537637 | 1.1:-75219019 | None:intergenic |
| AATGATGATTTAAGAGACAG+AGG | 0.549281 | 1.1:+75219457 | MS.gene80092:CDS |
| CTGTTCCATCTTTGTAGACA+CGG | 0.552711 | 1.1:-75218706 | None:intergenic |
| CAACCATCATCATAAGCAGC+AGG | 0.553072 | 1.1:-75219025 | None:intergenic |
| CAACCAATAATATCCAAACT+AGG | 0.558309 | 1.1:-75219406 | None:intergenic |
| ATTCCTCTTGATCCAGGGAC+AGG | 0.559473 | 1.1:+75218764 | MS.gene80092:CDS |
| ACAGCCAAAGGATTGATCAA+AGG | 0.567861 | 1.1:-75219376 | None:intergenic |
| CTTGTGAAGCAATGATATTG+AGG | 0.569784 | 1.1:-75218949 | None:intergenic |
| CCTGGATCAAGAGGAATTGG+TGG | 0.569918 | 1.1:-75218758 | None:intergenic |
| ACACCTGTCCCTGGATCAAG+AGG | 0.577665 | 1.1:-75218767 | None:intergenic |
| TCACCGTATTTGATTAACCA+TGG | 0.580276 | 1.1:-75219106 | None:intergenic |
| TTTGTGTACCCTGATGCACC+TGG | 0.583326 | 1.1:+75219340 | MS.gene80092:CDS |
| TATTGAGGTAACGTTGGTGA+AGG | 0.593342 | 1.1:-75218934 | None:intergenic |
| CATCATAAGCAGCAGGAAGA+GGG | 0.596512 | 1.1:-75219018 | None:intergenic |
| TTGTAGACACGGAGAAGAGG+TGG | 0.600538 | 1.1:-75218695 | None:intergenic |
| ATGATGATTTAAGAGACAGA+GGG | 0.614435 | 1.1:+75219458 | MS.gene80092:CDS |
| CACCAATTCCTCTTGATCCA+GGG | 0.614544 | 1.1:+75218759 | MS.gene80092:CDS |
| CAATCCCACCAGGTGCATCA+GGG | 0.618557 | 1.1:-75219348 | None:intergenic |
| AAGTGGTTGGAAAGGTGATG+TGG | 0.619960 | 1.1:+75219507 | MS.gene80092:CDS |
| ATGCTGTTAAGAAAAGTGGT+TGG | 0.622921 | 1.1:+75219494 | MS.gene80092:CDS |
| CAATGATATTGAGGTAACGT+TGG | 0.625842 | 1.1:-75218940 | None:intergenic |
| CTAGGAGCATCAACAGCCAA+AGG | 0.626074 | 1.1:-75219388 | None:intergenic |
| TGTACCCTGATGCACCTGGT+GGG | 0.626526 | 1.1:+75219344 | MS.gene80092:CDS |
| TCTTTGTAGACACGGAGAAG+AGG | 0.629057 | 1.1:-75218698 | None:intergenic |
| AATGGTGTTGAAACTTTACC+TGG | 0.634525 | 1.1:+75219202 | MS.gene80092:CDS |
| GTGTACCCTGATGCACCTGG+TGG | 0.646477 | 1.1:+75219343 | MS.gene80092:CDS |
| GTTAAGAAAAGTGGTTGGAA+AGG | 0.652072 | 1.1:+75219499 | MS.gene80092:CDS |
| ATCTTAGTTTACTATCATGG+TGG | 0.653724 | 1.1:+75218881 | MS.gene80092:CDS |
| GCATCAACAACGCTGAACCA+TGG | 0.663012 | 1.1:+75219089 | MS.gene80092:CDS |
| GGCTTCGAACTCCAAAACAA+AGG | 0.663157 | 1.1:-75219259 | None:intergenic |
| AAAGGGTTATCAATCCCACC+AGG | 0.678428 | 1.1:-75219358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACTCAGAATTCTATTGATA+TGG | + | chr1.1:75219582-75219601 | MS.gene80092:CDS | 25.0% |
| ! | ACAAAATTCCAAACTTTCAT+AGG | - | chr1.1:75219325-75219344 | None:intergenic | 25.0% |
| !!! | TAAGATGTTGATTTTTGTTG+CGG | + | chr1.1:75219432-75219451 | MS.gene80092:CDS | 25.0% |
| AAAGTTCACCTATGAAAGTT+TGG | + | chr1.1:75219314-75219333 | MS.gene80092:CDS | 30.0% | |
| AATGATGATTTAAGAGACAG+AGG | + | chr1.1:75219457-75219476 | MS.gene80092:CDS | 30.0% | |
| ATCTTAGTTTACTATCATGG+TGG | + | chr1.1:75218881-75218900 | MS.gene80092:CDS | 30.0% | |
| ATGATGATTTAAGAGACAGA+GGG | + | chr1.1:75219458-75219477 | MS.gene80092:CDS | 30.0% | |
| CAACCAATAATATCCAAACT+AGG | - | chr1.1:75219409-75219428 | None:intergenic | 30.0% | |
| CCAATCTTAGTTTACTATCA+TGG | + | chr1.1:75218878-75218897 | MS.gene80092:CDS | 30.0% | |
| CCATGATAGTAAACTAAGAT+TGG | - | chr1.1:75218881-75218900 | None:intergenic | 30.0% | |
| GAACCATGGTTAATCAAATA+CGG | + | chr1.1:75219103-75219122 | MS.gene80092:CDS | 30.0% | |
| GCAACAAAAATCAACATCTT+AGG | - | chr1.1:75219433-75219452 | None:intergenic | 30.0% | |
| TATGATGCTGTTAAGAAAAG+TGG | + | chr1.1:75219490-75219509 | MS.gene80092:CDS | 30.0% | |
| TCAATAGAATTCTGAGTTTC+AGG | - | chr1.1:75219580-75219599 | None:intergenic | 30.0% | |
| ! | AAGTTCTCTGTCTATTTCTT+TGG | - | chr1.1:75218675-75218694 | None:intergenic | 30.0% |
| ! | TTTTGTCAGAATCAGTTGAA+GGG | + | chr1.1:75219284-75219303 | MS.gene80092:CDS | 30.0% |
| !! | GATTTTGACCGTTTTTACAT+CGG | + | chr1.1:75219127-75219146 | MS.gene80092:CDS | 30.0% |
| !! | TACTTGCTTTTCCTTTGTTT+TGG | + | chr1.1:75219248-75219267 | MS.gene80092:CDS | 30.0% |
| !!! | AAGATGTTGATTTTTGTTGC+GGG | + | chr1.1:75219433-75219452 | MS.gene80092:CDS | 30.0% |
| ATGCTGTTAAGAAAAGTGGT+TGG | + | chr1.1:75219494-75219513 | MS.gene80092:CDS | 35.0% | |
| ATTTAAGAGACAGAGGGATT+TGG | + | chr1.1:75219464-75219483 | MS.gene80092:CDS | 35.0% | |
| CAATGATATTGAGGTAACGT+TGG | - | chr1.1:75218943-75218962 | None:intergenic | 35.0% | |
| CTTGTGAAGCAATGATATTG+AGG | - | chr1.1:75218952-75218971 | None:intergenic | 35.0% | |
| GAATACGTGCAGAGATTAAT+GGG | - | chr1.1:75218823-75218842 | None:intergenic | 35.0% | |
| GCTCCTAGTTTGGATATTAT+TGG | + | chr1.1:75219403-75219422 | MS.gene80092:CDS | 35.0% | |
| GTTAAGAAAAGTGGTTGGAA+AGG | + | chr1.1:75219499-75219518 | MS.gene80092:CDS | 35.0% | |
| TAACCCTTTGATCAATCCTT+TGG | + | chr1.1:75219372-75219391 | MS.gene80092:CDS | 35.0% | |
| TATCACCACCGATGTAAAAA+CGG | - | chr1.1:75219138-75219157 | None:intergenic | 35.0% | |
| TCACCGTATTTGATTAACCA+TGG | - | chr1.1:75219109-75219128 | None:intergenic | 35.0% | |
| TGAATACGTGCAGAGATTAA+TGG | - | chr1.1:75218824-75218843 | None:intergenic | 35.0% | |
| ! | AATGGTGTTGAAACTTTACC+TGG | + | chr1.1:75219202-75219221 | MS.gene80092:CDS | 35.0% |
| ! | GTTTTGTCAGAATCAGTTGA+AGG | + | chr1.1:75219283-75219302 | MS.gene80092:CDS | 35.0% |
| ! | TCAACTGATTCTGACAAAAC+CGG | - | chr1.1:75219283-75219302 | None:intergenic | 35.0% |
| !!! | AGATGTTGATTTTTGTTGCG+GGG | + | chr1.1:75219434-75219453 | MS.gene80092:CDS | 35.0% |
| !!! | AGATTGGAAGCTTTTGAGTT+TGG | - | chr1.1:75218865-75218884 | None:intergenic | 35.0% |
| AATGAGAAGTGACCCATTTG+AGG | - | chr1.1:75219057-75219076 | None:intergenic | 40.0% | |
| ACAGCCAAAGGATTGATCAA+AGG | - | chr1.1:75219379-75219398 | None:intergenic | 40.0% | |
| ATGAGAAGTGACCCATTTGA+GGG | - | chr1.1:75219056-75219075 | None:intergenic | 40.0% | |
| CAGCCAAAGGATTGATCAAA+GGG | - | chr1.1:75219378-75219397 | None:intergenic | 40.0% | |
| CTGTTCCATCTTTGTAGACA+CGG | - | chr1.1:75218709-75218728 | None:intergenic | 40.0% | |
| GGAACAGTTGAACGTTTCTT+AGG | + | chr1.1:75218722-75218741 | MS.gene80092:CDS | 40.0% | |
| GTTGTTGATGCTGTTGTTGA+TGG | - | chr1.1:75219080-75219099 | None:intergenic | 40.0% | |
| ! | CCTCTAATTTTCACATCACC+AGG | - | chr1.1:75219223-75219242 | None:intergenic | 40.0% |
| ! | CCTGGTGATGTGAAAATTAG+AGG | + | chr1.1:75219220-75219239 | MS.gene80092:CDS | 40.0% |
| ! | GTGGAACTTGTTCATGTTGA+AGG | + | chr1.1:75219526-75219545 | MS.gene80092:CDS | 40.0% |
| ! | TATTGAGGTAACGTTGGTGA+AGG | - | chr1.1:75218937-75218956 | None:intergenic | 40.0% |
| !! | TTTGACCGTTTTTACATCGG+TGG | + | chr1.1:75219130-75219149 | MS.gene80092:CDS | 40.0% |
| !!! | ATGGTTGGTTTTCCCTCAAA+TGG | + | chr1.1:75219041-75219060 | MS.gene80092:CDS | 40.0% |
| !!! | TGAGTTTGGTTGGTGAGTTT+TGG | - | chr1.1:75218851-75218870 | None:intergenic | 40.0% |
| !!! | TGGAAGCTTTTGAGTTTGGT+TGG | - | chr1.1:75218861-75218880 | None:intergenic | 40.0% |
| !!! | TGGTTGGTTTTCCCTCAAAT+GGG | + | chr1.1:75219042-75219061 | MS.gene80092:CDS | 40.0% |
| !!! | TTTGTTTTGGAGTTCGAAGC+CGG | + | chr1.1:75219261-75219280 | MS.gene80092:CDS | 40.0% |
| AAAGGGTTATCAATCCCACC+AGG | - | chr1.1:75219361-75219380 | None:intergenic | 45.0% | |
| AAGTGGTTGGAAAGGTGATG+TGG | + | chr1.1:75219507-75219526 | MS.gene80092:CDS | 45.0% | |
| CAACCATCATCATAAGCAGC+AGG | - | chr1.1:75219028-75219047 | None:intergenic | 45.0% | |
| CACAATGCACTTCTTCGTGT+TGG | + | chr1.1:75219178-75219197 | MS.gene80092:CDS | 45.0% | |
| CACCAATTCCTCTTGATCCA+GGG | + | chr1.1:75218759-75218778 | MS.gene80092:CDS | 45.0% | |
| CATCATAAGCAGCAGGAAGA+GGG | - | chr1.1:75219021-75219040 | None:intergenic | 45.0% | |
| CTTCTCCGTGTCTACAAAGA+TGG | + | chr1.1:75218701-75218720 | MS.gene80092:CDS | 45.0% | |
| GGCTTCGAACTCCAAAACAA+AGG | - | chr1.1:75219262-75219281 | None:intergenic | 45.0% | |
| TACATCGGTGGTGATACTTC+AGG | + | chr1.1:75219142-75219161 | MS.gene80092:CDS | 45.0% | |
| TCATCATAAGCAGCAGGAAG+AGG | - | chr1.1:75219022-75219041 | None:intergenic | 45.0% | |
| TCTTTGTAGACACGGAGAAG+AGG | - | chr1.1:75218701-75218720 | None:intergenic | 45.0% | |
| ! | CTTCCTGCTGCTTATGATGA+TGG | + | chr1.1:75219022-75219041 | MS.gene80092:CDS | 45.0% |
| ! | GCACTTCTTCGTGTTGGTAA+TGG | + | chr1.1:75219184-75219203 | MS.gene80092:CDS | 45.0% |
| !! | CTGCTGCTTATGATGATGGT+TGG | + | chr1.1:75219026-75219045 | MS.gene80092:CDS | 45.0% |
| ATTCCTCTTGATCCAGGGAC+AGG | + | chr1.1:75218764-75218783 | MS.gene80092:CDS | 50.0% | |
| CCACCAATTCCTCTTGATCC+AGG | + | chr1.1:75218758-75218777 | MS.gene80092:CDS | 50.0% | |
| CCTGGATCAAGAGGAATTGG+TGG | - | chr1.1:75218761-75218780 | None:intergenic | 50.0% | |
| GCATCAACAACGCTGAACCA+TGG | + | chr1.1:75219089-75219108 | MS.gene80092:CDS | 50.0% | |
| GGCTGTTGATGCTCCTAGTT+TGG | + | chr1.1:75219393-75219412 | MS.gene80092:CDS | 50.0% | |
| GTCCCTGGATCAAGAGGAAT+TGG | - | chr1.1:75218764-75218783 | None:intergenic | 50.0% | |
| TTGTAGACACGGAGAAGAGG+TGG | - | chr1.1:75218698-75218717 | None:intergenic | 50.0% | |
| TTTGATGAGACACCTGTCCC+TGG | - | chr1.1:75218779-75218798 | None:intergenic | 50.0% | |
| TTTGTGTACCCTGATGCACC+TGG | + | chr1.1:75219340-75219359 | MS.gene80092:CDS | 50.0% | |
| !! | CTAGGAGCATCAACAGCCAA+AGG | - | chr1.1:75219391-75219410 | None:intergenic | 50.0% |
| ACACCTGTCCCTGGATCAAG+AGG | - | chr1.1:75218770-75218789 | None:intergenic | 55.0% | |
| CAATCCCACCAGGTGCATCA+GGG | - | chr1.1:75219351-75219370 | None:intergenic | 55.0% | |
| TCAATCCCACCAGGTGCATC+AGG | - | chr1.1:75219352-75219371 | None:intergenic | 55.0% | |
| TGTACCCTGATGCACCTGGT+GGG | + | chr1.1:75219344-75219363 | MS.gene80092:CDS | 55.0% | |
| GTGTACCCTGATGCACCTGG+TGG | + | chr1.1:75219343-75219362 | MS.gene80092:CDS | 60.0% | |
| !! | GCAGCAGGAAGAGGGTGTTC+TGG | - | chr1.1:75219013-75219032 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 75218659 | 75219633 | 75218659 | ID=MS.gene80092 |
| chr1.1 | mRNA | 75218659 | 75219633 | 75218659 | ID=MS.gene80092.t1;Parent=MS.gene80092 |
| chr1.1 | exon | 75218659 | 75219633 | 75218659 | ID=MS.gene80092.t1.exon1;Parent=MS.gene80092.t1 |
| chr1.1 | CDS | 75218659 | 75219633 | 75218659 | ID=cds.MS.gene80092.t1;Parent=MS.gene80092.t1 |
| Gene Sequence |
| Protein sequence |
