AlfalfaGEDB | MS.gene071843

M. sativa cultivar XinJiangDaYe / MS.gene071843

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0006950 GO:0006952 GO:0007165 GO:0008150 GO:0008289 GO:0009738 GO:0009755 GO:0009987 GO:0010427 GO:0019208 GO:0019212 GO:0019840 GO:0019888 GO:0030234 GO:0031406 GO:0033293 GO:0036094 GO:0038023 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0050789 GO:0050794 GO:0050896 GO:0060089 GO:0065007 GO:0098772
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071843.t1	XP_003594836.1	99.4	157	1	0	1	157	1	157	1.10E-82	315.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071843.t1	E6YBW4	77.7	157	35	0	1	157	1	157	1.5e-64	246.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071843.t1	G7IMZ2	99.4	157	1	0	1	157	1	157	7.9e-83	315.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene071843	-0.807652	4.55E-50	-1.69E-46
MS.gene049217	MS.gene071843	-0.807243	5.56E-50	-1.69E-46
MS.gene049222	MS.gene071843	-0.814158	1.78E-51	-1.69E-46
MS.gene049232	MS.gene071843	-0.86152	9.69E-64	-1.69E-46
MS.gene049259	MS.gene071843	0.821786	3.35E-53	-1.69E-46
MS.gene049320	MS.gene071843	-0.808462	3.06E-50	-1.69E-46
MS.gene049483	MS.gene071843	0.816417	5.59E-52	-1.69E-46
MS.gene049611	MS.gene071843	0.835294	1.82E-56	-1.69E-46
MS.gene049633	MS.gene071843	-0.802158	6.41E-49	-1.69E-46
MS.gene049634	MS.gene071843	0.854149	1.49E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071843.t1	MTR_2g035170	99.363	157	1	1	157	1	157	2.37e-112	315
MS.gene071843.t1	MTR_2g035100	60.510	157	62	1	157	1	157	3.63e-63	191
MS.gene071843.t1	MTR_2g035105	59.236	157	64	1	157	1	157	6.68e-62	188
MS.gene071843.t1	MTR_2g035150	58.599	157	65	1	157	1	157	9.68e-62	187
MS.gene071843.t1	MTR_2g035120	57.962	157	66	1	157	1	157	1.55e-59	182
MS.gene071843.t1	MTR_2g035130	56.688	157	68	1	157	1	157	3.96e-58	178
MS.gene071843.t1	MTR_6g033450	54.140	157	72	1	157	1	157	1.75e-54	169
MS.gene071843.t1	MTR_4g120970	54.140	157	72	1	157	1	157	1.75e-54	169
MS.gene071843.t1	MTR_2g035320	48.408	157	81	1	157	1	157	8.37e-50	157
MS.gene071843.t1	MTR_2g035190	47.771	157	82	1	157	1	157	3.07e-48	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 46 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGGAACAGCAGCAG+GGG	0.564864	2.2:+53740657	None:intergenic
AAGAAGCTCACCACAGTTGA+AGG	0.458485	2.2:-53740526	MS.gene071843:intron
ACTGAAGGAACTGGTGGTGC+TGG	0.463110	2.2:-53740556	MS.gene071843:CDS
ACTTAAATTATAATCACCTT+TGG	0.409104	2.2:+53739826	None:intergenic
AGGTGATTATAATTTAAGTG+AGG	0.654716	2.2:-53739822	MS.gene071843:CDS
AGTAATCAGGATTTGCCAAA+AGG	0.469472	2.2:+53739741	None:intergenic
AGTCTCATTCAAGAGCCAAT+TGG	0.492931	2.2:-53739900	MS.gene071843:CDS
AGTGAGGAGGAGTTGAAAGC+TGG	0.432811	2.2:-53739806	MS.gene071843:CDS
ATCAACATGTACATTCCTAA+TGG	0.402440	2.2:+53739856	None:intergenic
ATGGCTTTGAAGAGCCTAAC+AGG	0.389381	2.2:+53740640	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAACATGTACATTCCTAA+TGG	+	chr2.2:53740571-53740590	None:intergenic	30.0%
GTACAACTTTAGCATTATTG+GGG	-	chr2.2:53740473-53740492	MS.gene071843:intron	30.0%
GTGTACAACTTTAGCATTAT+TGG	-	chr2.2:53740471-53740490	MS.gene071843:intron	30.0%
GTTATGAAACTCTAATGACA+TGG	+	chr2.2:53739806-53739825	None:intergenic	30.0%
TACAACTTTAGCATTATTGG+GGG	-	chr2.2:53740474-53740493	MS.gene071843:intron	30.0%
TGAGTGAATTTGATGAATAC+AGG	-	chr2.2:53740393-53740412	MS.gene071843:intron	30.0%
AGACTCAAATCCTAAAGTCA+TGG	+	chr2.2:53739951-53739970	None:intergenic	35.0%
AGTAATCAGGATTTGCCAAA+AGG	+	chr2.2:53740686-53740705	None:intergenic	35.0%
CTTCAGTGAACTCAATACTT+TGG	+	chr2.2:53739855-53739874	None:intergenic	35.0%
GTGAATTTGATGAATACAGG+TGG	-	chr2.2:53740396-53740415	MS.gene071843:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	53739739	53740707	53739739	ID=MS.gene071843
chr2.2	mRNA	53739739	53740707	53739739	ID=MS.gene071843.t1;Parent=MS.gene071843
chr2.2	exon	53740527	53740707	53740527	ID=MS.gene071843.t1.exon1;Parent=MS.gene071843.t1
chr2.2	CDS	53740527	53740707	53740527	ID=cds.MS.gene071843.t1;Parent=MS.gene071843.t1
chr2.2	exon	53739739	53740031	53739739	ID=MS.gene071843.t1.exon2;Parent=MS.gene071843.t1
chr2.2	CDS	53739739	53740031	53739739	ID=cds.MS.gene071843.t1;Parent=MS.gene071843.t1

Gene Sequence

>MS.gene071843

ATGGGTGTACAAACTCAGGAGTATGCTACCCCTGCTGCTGTTCCTCCTGTTAGGCTCTTCAAAGCCATGTCATTAGAGTTTCATAACCTCTTCCCAAAGCTTGTGGAAGTGATCCAAAGTATTGAGTTCACTGAAGGAACTGGTGGTGCTGGAACAATCAAGAAGCTCACCACAGTTGAAGGTCAGTAATTAAATGCTATATTTTAATTCCATGACTTTAGGATTTGAGTCTTTGTTAGAGTGACAAGTGAGGACTTGTATTGTAGAAAAATGATCCTCAATTAAAATAAGAGAAAATTATAATTAATTAAAATGACACTAATGATCATTTTACAGTTGTCTCAGAGGATTTTAACTCTGTCTCTTTAGACCATAATTTGCACCTACTTATATCGTTGTAAACTTGAGCTTTTTGAATCGATTATGAGACTAATTCACATATCCAAAAATCATCACAAGTAAGACGAAGAAAAATGTTATGATTGTTTTTAATGAGAAACCATGATCATTATTTTTTTTTTTTTTTTATAGAAAAATGTTAGTGGTTAATTCGTTAAATTAAAGGAATATGGTCATAGTTATTTCATTTGAAAATCATTTATATAACATAATTTATAATCATAGTTAGTTAAATTAAATTAATGGAATATGAAATGAGTGAATTTGATGAATACAGGTGGAGAGACCAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGACTAAATTTGTGTACAACTTTAGCATTATTGGGGGCACTGGATTGGCTGACACATTGGAGAAAGTCTCATTCAAGAGCCAATTGGTTGAAGGACCAAATGGAGGGTCCATTAGGAATGTACATGTTGATTATTTTACCAAAGGTGATTATAATTTAAGTGAGGAGGAGTTGAAAGCTGGTAAAGCAAAGGTTGAAGGACTTGTAAAGCTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA

Protein sequence

>MS.gene071843.t1

MGVQTQEYATPAAVPPVRLFKAMSLEFHNLFPKLVEVIQSIEFTEGTGGAGTIKKLTTVEGGETKYVLHRVDEIDETKFVYNFSIIGGTGLADTLEKVSFKSQLVEGPNGGSIRNVHVDYFTKGDYNLSEEELKAGKAKVEGLVKLVEGYLLANPDY