AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061767

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061767.t1 MTR_3g108150 44.195 267 107 7 15 276 11 240 3.78e-56 185
MS.gene061767.t1 MTR_0492s0020 45.000 260 104 6 16 274 85 306 2.13e-55 185
MS.gene061767.t1 MTR_0543s0010 45.000 260 104 6 16 274 85 306 4.24e-55 184
MS.gene061767.t1 MTR_7g088260 41.887 265 112 5 16 276 90 316 3.96e-49 169
MS.gene061767.t1 MTR_3g108560 39.245 265 119 9 14 273 17 244 1.18e-41 145
MS.gene061767.t1 MTR_3g108560 39.245 265 119 9 14 273 17 244 6.90e-41 145
MS.gene061767.t1 MTR_3g087260 43.721 215 76 4 17 229 12 183 6.14e-38 139
MS.gene061767.t1 MTR_3g109982 42.922 219 92 4 17 232 13 201 1.24e-36 138
MS.gene061767.t1 MTR_3g109982 48.413 126 60 3 156 280 216 337 1.01e-22 98.2
MS.gene061767.t1 MTR_3g110010 42.922 219 92 4 17 232 13 201 1.93e-36 137
MS.gene061767.t1 MTR_3g110010 48.413 126 60 3 156 280 216 337 2.02e-22 97.4
MS.gene061767.t1 MTR_7g056020 39.643 280 118 9 5 280 4 236 8.00e-34 130
MS.gene061767.t1 MTR_1g041245 33.209 268 133 8 17 275 11 241 6.96e-30 116
MS.gene061767.t1 MTR_7g056447 37.619 210 90 5 17 218 9 185 1.36e-27 108
MS.gene061767.t1 MTR_3g036250 33.937 221 107 5 14 225 2 192 1.93e-25 103
MS.gene061767.t1 MTR_7g056433 32.090 268 137 7 6 263 1 233 2.67e-25 103
MS.gene061767.t1 MTR_3g040700 34.071 226 110 5 9 225 35 230 5.68e-25 103
MS.gene061767.t1 MTR_7g098480 34.646 254 114 7 17 259 18 230 8.64e-25 103
MS.gene061767.t1 MTR_4g080610 34.601 263 110 7 15 275 8 210 2.04e-24 101
MS.gene061767.t1 MTR_7g115270 34.513 226 105 6 16 227 11 207 2.55e-24 101
MS.gene061767.t1 MTR_8g085430 33.333 225 110 4 17 229 11 207 1.69e-23 98.2
MS.gene061767.t1 MTR_4g134150 36.019 211 98 5 16 223 13 189 1.89e-23 95.9
MS.gene061767.t1 MTR_7g032380 32.331 266 127 8 17 273 11 232 2.61e-23 97.8
MS.gene061767.t1 MTR_7g098510 31.636 275 141 7 17 282 18 254 3.90e-23 97.8
MS.gene061767.t1 MTR_7g098570 33.086 269 133 7 17 276 20 250 1.47e-22 97.1
MS.gene061767.t1 MTR_3g082890 34.632 231 113 6 1 224 1 200 2.91e-22 95.9
MS.gene061767.t1 MTR_3g082890 34.632 231 113 6 1 224 81 280 2.97e-22 96.3
MS.gene061767.t1 MTR_3g467400 31.786 280 134 9 17 274 3 247 7.89e-22 94.0
MS.gene061767.t1 MTR_3g023630 32.420 219 111 5 15 226 6 194 2.84e-20 89.7
MS.gene061767.t1 MTR_7g007080 30.545 275 146 8 15 276 2 244 4.30e-20 89.4
MS.gene061767.t1 MTR_3g105060 31.050 219 117 5 17 230 14 203 4.38e-20 89.4
MS.gene061767.t1 MTR_7g032370 34.928 209 96 5 29 229 2 178 8.17e-20 88.2
MS.gene061767.t1 MTR_7g033990 32.841 271 134 9 17 275 11 245 1.89e-19 87.8
MS.gene061767.t1 MTR_7g056420 31.944 216 90 5 16 228 8 169 1.12e-18 86.3
MS.gene061767.t1 MTR_7g056430 31.797 217 91 5 16 229 8 170 1.58e-18 85.9
MS.gene061767.t1 MTR_5g008920 34.259 216 102 7 19 227 14 196 2.81e-18 84.3
MS.gene061767.t1 MTR_3g107100 27.698 278 157 7 9 275 3 247 5.71e-17 80.5
MS.gene061767.t1 MTR_7g114710 33.019 212 109 5 17 223 13 196 1.11e-16 79.3
MS.gene061767.t1 MTR_7g034110 32.618 233 105 8 17 234 11 206 1.80e-16 78.6
MS.gene061767.t1 MTR_4g039440 29.104 268 142 8 17 273 34 264 3.75e-16 78.2
MS.gene061767.t1 MTR_7g056277 28.571 273 153 9 11 274 253 492 5.47e-16 78.2
MS.gene061767.t1 MTR_3g107120 32.197 264 157 10 17 275 9 255 6.10e-16 77.4
MS.gene061767.t1 MTR_7g056287 28.731 268 149 9 16 274 2 236 1.66e-15 76.3
MS.gene061767.t1 MTR_7g034115 32.547 212 106 5 17 221 11 192 1.81e-15 75.9
MS.gene061767.t1 MTR_5g073370 29.710 276 152 9 14 280 2 244 1.89e-15 75.9
MS.gene061767.t1 MTR_6g044572 30.216 278 171 7 17 279 2 271 6.20e-15 74.7
MS.gene061767.t1 MTR_6g044560 30.216 278 171 7 17 279 178 447 7.30e-15 74.7
MS.gene061767.t1 MTR_6g045333 32.677 254 129 11 17 263 61 279 7.78e-14 71.6
MS.gene061767.t1 MTR_3g113782 54.237 59 27 0 1 59 1 59 8.66e-14 65.9
MS.gene061767.t1 MTR_7g026500 30.088 226 115 6 17 228 14 210 8.57e-13 68.2
MS.gene061767.t1 MTR_3g114200 34.104 173 83 3 11 180 13 157 1.27e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061767.t1 AT3G50710 36.111 216 94 9 17 220 2 185 4.05e-15 75.5
MS.gene061767.t1 AT5G41840 31.356 236 123 8 17 236 14 226 1.95e-14 73.6
MS.gene061767.t1 AT5G53635 32.212 208 109 6 18 221 1 180 2.36e-14 73.2
MS.gene061767.t1 AT5G41830 31.696 224 117 8 17 226 13 214 4.85e-14 72.4
MS.gene061767.t1 AT3G59160 31.034 232 131 9 11 225 7 226 2.02e-13 70.5
MS.gene061767.t1 AT4G10400 32.039 206 113 5 17 220 2 182 3.45e-13 69.7
MS.gene061767.t1 AT4G10400 32.039 206 113 5 17 220 2 182 3.45e-13 69.7
MS.gene061767.t1 AT4G10400 32.039 206 113 5 17 220 2 182 3.45e-13 69.7
MS.gene061767.t1 AT4G09920 31.553 206 114 5 17 220 2 182 1.10e-12 67.4
MS.gene061767.t1 AT4G09920 31.553 206 114 5 17 220 2 182 1.10e-12 67.4
MS.gene061767.t1 AT4G09920 31.553 206 114 5 17 220 2 182 1.25e-12 67.0
MS.gene061767.t1 AT4G09920 31.553 206 114 5 17 220 2 182 1.25e-12 67.0
MS.gene061767.t1 AT4G09920 31.553 206 114 5 17 220 2 182 1.25e-12 67.0
MS.gene061767.t1 AT3G59190 29.134 254 142 9 1 245 1 225 2.58e-12 67.0
MS.gene061767.t1 AT3G59190 29.134 254 142 9 1 245 1 225 2.82e-12 67.0
MS.gene061767.t1 AT5G56410 31.416 226 108 8 16 220 2 201 3.33e-12 66.6
MS.gene061767.t1 AT3G59240 29.630 216 121 9 17 225 8 199 3.83e-12 66.6
MS.gene061767.t1 AT4G13960 31.429 210 113 9 17 220 2 186 2.55e-11 63.9
MS.gene061767.t1 AT4G13960 31.429 210 113 9 17 220 2 186 2.55e-11 63.9

Find 81 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGAATTTGCGGCATTTA+AGG 0.224341 1.2:-29810831 None:intergenic
GCGGATCTTGCCGAAAATAT+TGG 0.270576 1.2:-29810693 None:intergenic
TAATATTTAGTTCATATTTA+CGG 0.274151 1.2:+29810664 MS.gene061767:intron
CGGATCTTGCCGAAAATATT+GGG 0.275759 1.2:-29810692 None:intergenic
TTCAAACAGGTGGGAGCGTT+TGG 0.303306 1.2:-29810751 None:intergenic
TTGCACCGTCAATAAAAGTT+TGG 0.331242 1.2:-29810864 None:intergenic
TTGATAGTTAGAACGATAGA+AGG 0.361470 1.2:-29810949 None:intergenic
ATAAGTATTCTTTGTTTGAT+TGG 0.363975 1.2:+29811238 MS.gene061767:CDS
TCCTCTCACAACTCACCCTC+AGG 0.367623 1.2:+29809791 MS.gene061767:CDS
TTGTTTCCAGCTCCTCTAGA+AGG 0.378519 1.2:-29811113 None:intergenic
CATGTGAAGTGCTTTGAGTA+AGG 0.409063 1.2:-29811034 None:intergenic
CATCTCTGGAAACTTCTGTC+TGG 0.415210 1.2:+29811084 MS.gene061767:CDS
TTAAAAGTCATGAACATCTC+TGG 0.419732 1.2:+29811070 MS.gene061767:CDS
GTTGTAGGGGCACCACTTGT+AGG 0.429661 1.2:-29811284 None:intergenic
TTTAAGGTTTAATGAGAGGA+TGG 0.435701 1.2:-29810815 None:intergenic
GGAAAGAATGTGATGAAGAA+GGG 0.436664 1.2:-29809707 None:intergenic
GTTATATCGGTTGGTGATGC+AGG 0.444702 1.2:-29810785 None:intergenic
GGATGGGTACAGTGTTATAT+CGG 0.446605 1.2:-29810798 None:intergenic
GCAGAAGACATACCAGTTGT+AGG 0.453423 1.2:-29811299 None:intergenic
ATGTTACGCAGTTCAATTTG+AGG 0.457591 1.2:-29810984 None:intergenic
ATCTCTGGAAACTTCTGTCT+GGG 0.458575 1.2:+29811085 MS.gene061767:CDS
AATGTTAGCTTTCACCAACT+TGG 0.461078 1.2:-29811211 None:intergenic
GTGAGTTGTGAGAGGAAGAG+TGG 0.462806 1.2:-29809784 None:intergenic
TTGAATGCCCTAGCCTCTGC+GGG 0.466072 1.2:-29809639 None:intergenic
GGAGTTGAAGAATTTCAAAC+AGG 0.467925 1.2:-29810764 None:intergenic
ACAAGTGGTGCCCCTACAAC+TGG 0.473669 1.2:+29811287 MS.gene061767:CDS
TCAATGTCCCCGCAGAGGCT+AGG 0.479314 1.2:+29809631 None:intergenic
AGGAAAGAATGTGATGAAGA+AGG 0.484956 1.2:-29809708 None:intergenic
CAATGTCCCCGCAGAGGCTA+GGG 0.494778 1.2:+29809632 None:intergenic
CAGAAGACATACCAGTTGTA+GGG 0.495964 1.2:-29811298 None:intergenic
GTCTTTGTCATCGAAGTTGA+GGG 0.504540 1.2:-29810725 None:intergenic
GGTTCCCCTTCTAGAGGAGC+TGG 0.505196 1.2:+29811107 MS.gene061767:CDS
GGTATCTTTCGTCGGAAGGA+AGG 0.507037 1.2:-29809728 None:intergenic
TTTCACGCCTAGAGAATTTG+CGG 0.517784 1.2:-29810840 None:intergenic
GTTTCCATCTCTTTGAGAGA+AGG 0.521702 1.2:-29809762 None:intergenic
GTTGAAGAATTTCAAACAGG+TGG 0.523380 1.2:-29810761 None:intergenic
TTAAATGCCGCAAATTCTCT+AGG 0.523521 1.2:+29810833 MS.gene061767:CDS
TGTTTCCAGCTCCTCTAGAA+GGG 0.524428 1.2:-29811112 None:intergenic
CAAATTGAACTGCGTAACAT+TGG 0.528944 1.2:+29810987 MS.gene061767:CDS
CAAGCCTTCTCTCAAAGAGA+TGG 0.529722 1.2:+29809758 MS.gene061767:CDS
ATGTGAAGTGCTTTGAGTAA+GGG 0.530631 1.2:-29811033 None:intergenic
AGTCTTTGTCATCGAAGTTG+AGG 0.539917 1.2:-29810726 None:intergenic
CAACACCGACAGTCTCGATA+AGG 0.540842 1.2:-29811156 None:intergenic
GTCTGGGGTTCCCCTTCTAG+AGG 0.540939 1.2:+29811101 MS.gene061767:CDS
CCTCTCACAACTCACCCTCA+GGG 0.542854 1.2:+29809792 MS.gene061767:CDS
GGCATTTAAGGTTTAATGAG+AGG 0.547702 1.2:-29810819 None:intergenic
AACATTGGACGATGTTCCAC+AGG 0.548895 1.2:+29811002 MS.gene061767:CDS
GTTTGATTGGTTTCATAACG+TGG 0.551742 1.2:+29811251 MS.gene061767:CDS
GTGACGGTGGTATCTTTCGT+CGG 0.562368 1.2:-29809736 None:intergenic
TTAAGGTTTAATGAGAGGAT+GGG 0.564482 1.2:-29810814 None:intergenic
CTTACTCAAAGCACTTCACA+TGG 0.569756 1.2:+29811035 MS.gene061767:CDS
CGGTGGTATCTTTCGTCGGA+AGG 0.572548 1.2:-29809732 None:intergenic
GATAGAAGGCAACGCTGAGT+AGG 0.575361 1.2:-29810935 None:intergenic
CTTTGAGAGAAGGCTTGTGA+CGG 0.583107 1.2:-29809752 None:intergenic
GGGTACAGTGTTATATCGGT+TGG 0.583137 1.2:-29810794 None:intergenic
GGAGCATCTGCGCCTACAAG+TGG 0.584663 1.2:+29811272 MS.gene061767:CDS
GGATCTTGCCGAAAATATTG+GGG 0.586107 1.2:-29810691 None:intergenic
GAAAGAATGTGATGAAGAAG+GGG 0.590034 1.2:-29809706 None:intergenic
CAATAGAGATCCGCCCCTGA+GGG 0.590753 1.2:-29809806 None:intergenic
GTTTCCAGCTCCTCTAGAAG+GGG 0.592605 1.2:-29811111 None:intergenic
TTGAAGAATTTCAAACAGGT+GGG 0.592854 1.2:-29810760 None:intergenic
AAGTTGAGGGTGAGCAGTGG+CGG 0.593026 1.2:-29810712 None:intergenic
TGAGAGAAGGCTTGTGACGG+TGG 0.599956 1.2:-29809749 None:intergenic
CCCTGAGGGTGAGTTGTGAG+AGG 0.605184 1.2:-29809792 None:intergenic
GTTCAATTTGAGGACAGACA+AGG 0.611188 1.2:-29810974 None:intergenic
CGACATAATCAGTGCACTGT+CGG 0.615923 1.2:+29809681 MS.gene061767:CDS
TCACAACTCACCCTCAGGGG+CGG 0.627840 1.2:+29809796 MS.gene061767:CDS
TCAATAGAGATCCGCCCCTG+AGG 0.638397 1.2:-29809807 None:intergenic
GTTGAATGCCCTAGCCTCTG+CGG 0.644720 1.2:-29809640 None:intergenic
CTCTCACAACTCACCCTCAG+GGG 0.645171 1.2:+29809793 MS.gene061767:CDS
ATTCGTCGAGATCGATGCTG+AGG 0.646132 1.2:-29810912 None:intergenic
TTCGTCGAGATCGATGCTGA+GGG 0.650567 1.2:-29810911 None:intergenic
AGAAGACATACCAGTTGTAG+GGG 0.656588 1.2:-29811297 None:intergenic
TCGAAGTTGAGGGTGAGCAG+TGG 0.664091 1.2:-29810715 None:intergenic
TCTCTGGAAACTTCTGTCTG+GGG 0.667742 1.2:+29811086 MS.gene061767:CDS
AAACACCTTATCGAGACTGT+CGG 0.675204 1.2:+29811151 MS.gene061767:CDS
ACATCTCAATGTCCCCGCAG+AGG 0.678052 1.2:+29809626 None:intergenic
GATCTTGCCGAAAATATTGG+GGG 0.689341 1.2:-29810690 None:intergenic
AGTAAGGGAAGATGAACCTG+TGG 0.698887 1.2:-29811018 None:intergenic
ATCTTGCCGAAAATATTGGG+GGG 0.702242 1.2:-29810689 None:intergenic
TGAATGCCCTAGCCTCTGCG+GGG 0.750021 1.2:-29809638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATTTAAT+TGG - chr1.2:29809857-29809876 None:intergenic 0.0%
!! AAAAAAAAAAAAATTTAATT+GGG - chr1.2:29809856-29809875 None:intergenic 0.0%
!! AAAAAAAAAAATTTAATTGG+GGG - chr1.2:29809854-29809873 None:intergenic 10.0%
!!! TAATATTTAGTTCATATTTA+CGG + chr1.2:29810664-29810683 MS.gene061767:intron 10.0%
!! AAAAAAAAAATTTAATTGGG+GGG - chr1.2:29809853-29809872 None:intergenic 15.0%
!! AACCCTGTAAATAAAAAATT+GGG + chr1.2:29810287-29810306 MS.gene061767:intron 20.0%
!! CTAACATTCCTAAAATAAAA+CGG - chr1.2:29811418-29811437 None:intergenic 20.0%
!!! ATAAGTATTCTTTGTTTGAT+TGG + chr1.2:29811238-29811257 MS.gene061767:CDS 20.0%
!!! TGTGCATTTTATAGTATATT+TGG + chr1.2:29810563-29810582 MS.gene061767:intron 20.0%
!!! TTTTAGAACTTAGAACATAA+TGG + chr1.2:29810390-29810409 MS.gene061767:intron 20.0%
! ACCCTGTAAATAAAAAATTG+GGG + chr1.2:29810288-29810307 MS.gene061767:intron 25.0%
! GAACCCTGTAAATAAAAAAT+TGG + chr1.2:29810286-29810305 MS.gene061767:intron 25.0%
! GAATGAAACATAGAATGATA+GGG - chr1.2:29810160-29810179 None:intergenic 25.0%
! GATGACAATAATTTGAAAAC+TGG - chr1.2:29811324-29811343 None:intergenic 25.0%
! TCAAACAACATAGAAAATCA+AGG - chr1.2:29810324-29810343 None:intergenic 25.0%
!! ATTTTCTTGATTTTCACTTC+AGG + chr1.2:29810123-29810142 MS.gene061767:intron 25.0%
!! GAAATCCAAACTTTTATTGA+CGG + chr1.2:29810859-29810878 MS.gene061767:CDS 25.0%
!!! TGCAGTGATTTTTTTCTTAA+TGG - chr1.2:29811370-29811389 None:intergenic 25.0%
AAAAAAATCACTGCACATGT+GGG + chr1.2:29811375-29811394 MS.gene061767:intron 30.0%
ACAAAAACAAATGTGAACTC+AGG - chr1.2:29809905-29809924 None:intergenic 30.0%
ACATTCCTAAAATAAAACGG+CGG - chr1.2:29811415-29811434 None:intergenic 30.0%
AGTGAAAGGAATCAAATCAA+AGG - chr1.2:29810247-29810266 None:intergenic 30.0%
CAAAAACAAATGTGAACTCA+GGG - chr1.2:29809904-29809923 None:intergenic 30.0%
CCCTGTAAATAAAAAATTGG+GGG + chr1.2:29810289-29810308 MS.gene061767:intron 30.0%
GAAAATAACAAACTGAAGTG+AGG - chr1.2:29810109-29810128 None:intergenic 30.0%
GGAATGAAACATAGAATGAT+AGG - chr1.2:29810161-29810180 None:intergenic 30.0%
GTGAAAGGAATCAAAATCAA+AGG - chr1.2:29810182-29810201 None:intergenic 30.0%
TTAAAAGTCATGAACATCTC+TGG + chr1.2:29811070-29811089 MS.gene061767:CDS 30.0%
TTAAGGTTTAATGAGAGGAT+GGG - chr1.2:29810817-29810836 None:intergenic 30.0%
TTGAAGAATTTCAAACAGGT+GGG - chr1.2:29810763-29810782 None:intergenic 30.0%
TTGAATTGAATCAGCAACAT+AGG - chr1.2:29810364-29810383 None:intergenic 30.0%
! TTGATAGTTAGAACGATAGA+AGG - chr1.2:29810952-29810971 None:intergenic 30.0%
! TTTAAGGTTTAATGAGAGGA+TGG - chr1.2:29810818-29810837 None:intergenic 30.0%
!!! CCCCCAATTTTTTATTTACA+GGG - chr1.2:29810292-29810311 None:intergenic 30.0%
!!! TCCCCCAATTTTTTATTTAC+AGG - chr1.2:29810293-29810312 None:intergenic 30.0%
AACTGAAGTGAAACTGTGAA+AGG - chr1.2:29810197-29810216 None:intergenic 35.0%
AGGAAAGAATGTGATGAAGA+AGG - chr1.2:29809711-29809730 None:intergenic 35.0%
ATGTTACGCAGTTCAATTTG+AGG - chr1.2:29810987-29811006 None:intergenic 35.0%
ATTCCTAAAATAAAACGGCG+GGG - chr1.2:29811413-29811432 None:intergenic 35.0%
CAAATTGAACTGCGTAACAT+TGG + chr1.2:29810987-29811006 MS.gene061767:CDS 35.0%
CATTCCTAAAATAAAACGGC+GGG - chr1.2:29811414-29811433 None:intergenic 35.0%
GAAAAAAATCACTGCACATG+TGG + chr1.2:29811374-29811393 MS.gene061767:intron 35.0%
GAAAGAATGTGATGAAGAAG+GGG - chr1.2:29809709-29809728 None:intergenic 35.0%
GAATCACTTTGATATGTGAG+AGG - chr1.2:29809973-29809992 None:intergenic 35.0%
GGAAAGAATGTGATGAAGAA+GGG - chr1.2:29809710-29809729 None:intergenic 35.0%
GGAGTTGAAGAATTTCAAAC+AGG - chr1.2:29810767-29810786 None:intergenic 35.0%
GTTGAAGAATTTCAAACAGG+TGG - chr1.2:29810764-29810783 None:intergenic 35.0%
TAACAACCAGTACAGTAACA+GGG - chr1.2:29810498-29810517 None:intergenic 35.0%
TAGAGAATTTGCGGCATTTA+AGG - chr1.2:29810834-29810853 None:intergenic 35.0%
TTAAATGCCGCAAATTCTCT+AGG + chr1.2:29810833-29810852 MS.gene061767:CDS 35.0%
TTCAAGCAAACTGAAGTGAA+AGG - chr1.2:29810261-29810280 None:intergenic 35.0%
TTGCACCGTCAATAAAAGTT+TGG - chr1.2:29810867-29810886 None:intergenic 35.0%
! ATGTGAAGTGCTTTGAGTAA+GGG - chr1.2:29811036-29811055 None:intergenic 35.0%
! GACTTGATTTTGTACTGTAC+TGG + chr1.2:29810434-29810453 MS.gene061767:intron 35.0%
! GGCATTTAAGGTTTAATGAG+AGG - chr1.2:29810822-29810841 None:intergenic 35.0%
! GTTTTTGTCTTACTCTCTCT+CGG + chr1.2:29809917-29809936 MS.gene061767:intron 35.0%
!! AATGTTAGCTTTCACCAACT+TGG - chr1.2:29811214-29811233 None:intergenic 35.0%
!! GTTTGATTGGTTTCATAACG+TGG + chr1.2:29811251-29811270 MS.gene061767:CDS 35.0%
!!! GCTATTGCGGTGATATTTTT+TGG + chr1.2:29810606-29810625 MS.gene061767:intron 35.0%
!!! TGAGGGTTTTAAGGTTTGTA+AGG - chr1.2:29810897-29810916 None:intergenic 35.0%
AAACACCTTATCGAGACTGT+CGG + chr1.2:29811151-29811170 MS.gene061767:CDS 40.0%
AACAACCAGTACAGTAACAG+GGG - chr1.2:29810497-29810516 None:intergenic 40.0%
AGAAGACATACCAGTTGTAG+GGG - chr1.2:29811300-29811319 None:intergenic 40.0%
AGTCTTTGTCATCGAAGTTG+AGG - chr1.2:29810729-29810748 None:intergenic 40.0%
ATCTTGCCGAAAATATTGGG+GGG - chr1.2:29810692-29810711 None:intergenic 40.0%
CAGAAGACATACCAGTTGTA+GGG - chr1.2:29811301-29811320 None:intergenic 40.0%
CGGATCTTGCCGAAAATATT+GGG - chr1.2:29810695-29810714 None:intergenic 40.0%
GATCTTGCCGAAAATATTGG+GGG - chr1.2:29810693-29810712 None:intergenic 40.0%
GGATCTTGCCGAAAATATTG+GGG - chr1.2:29810694-29810713 None:intergenic 40.0%
GGATGGGTACAGTGTTATAT+CGG - chr1.2:29810801-29810820 None:intergenic 40.0%
GTAACAACCAGTACAGTAAC+AGG - chr1.2:29810499-29810518 None:intergenic 40.0%
GTCTTTGTCATCGAAGTTGA+GGG - chr1.2:29810728-29810747 None:intergenic 40.0%
GTTCAATTTGAGGACAGACA+AGG - chr1.2:29810977-29810996 None:intergenic 40.0%
TGATATGTGAGAGGATTGAG+AGG - chr1.2:29809964-29809983 None:intergenic 40.0%
TTTCACGCCTAGAGAATTTG+CGG - chr1.2:29810843-29810862 None:intergenic 40.0%
! ATCTCTGGAAACTTCTGTCT+GGG + chr1.2:29811085-29811104 MS.gene061767:CDS 40.0%
! CATGTGAAGTGCTTTGAGTA+AGG - chr1.2:29811037-29811056 None:intergenic 40.0%
! CTTACTCAAAGCACTTCACA+TGG + chr1.2:29811035-29811054 MS.gene061767:CDS 40.0%
! GTTTCCATCTCTTTGAGAGA+AGG - chr1.2:29809765-29809784 None:intergenic 40.0%
! TGTTGCATGCTTTTCCAAGT+TGG + chr1.2:29811197-29811216 MS.gene061767:CDS 40.0%
AACATTGGACGATGTTCCAC+AGG + chr1.2:29811002-29811021 MS.gene061767:CDS 45.0%
AGTAAGGGAAGATGAACCTG+TGG - chr1.2:29811021-29811040 None:intergenic 45.0%
CAAGCCTTCTCTCAAAGAGA+TGG + chr1.2:29809758-29809777 MS.gene061767:CDS 45.0%
CGACATAATCAGTGCACTGT+CGG + chr1.2:29809681-29809700 MS.gene061767:CDS 45.0%
GCAGAAGACATACCAGTTGT+AGG - chr1.2:29811302-29811321 None:intergenic 45.0%
GCGGATCTTGCCGAAAATAT+TGG - chr1.2:29810696-29810715 None:intergenic 45.0%
GGGTACAGTGTTATATCGGT+TGG - chr1.2:29810797-29810816 None:intergenic 45.0%
TGAGGTGTATGAGAGTTCAG+AGG - chr1.2:29810091-29810110 None:intergenic 45.0%
TTGTTTCCAGCTCCTCTAGA+AGG - chr1.2:29811116-29811135 None:intergenic 45.0%
! CATCTCTGGAAACTTCTGTC+TGG + chr1.2:29811084-29811103 MS.gene061767:CDS 45.0%
! CTTTGAGAGAAGGCTTGTGA+CGG - chr1.2:29809755-29809774 None:intergenic 45.0%
! GATCGATGCTGAGGGTTTTA+AGG - chr1.2:29810906-29810925 None:intergenic 45.0%
! TCTCTGGAAACTTCTGTCTG+GGG + chr1.2:29811086-29811105 MS.gene061767:CDS 45.0%
! TGTTTCCAGCTCCTCTAGAA+GGG - chr1.2:29811115-29811134 None:intergenic 45.0%
!! AATTTAATTGGGGGGTGCCA+CGG - chr1.2:29809845-29809864 None:intergenic 45.0%
!! GTTATATCGGTTGGTGATGC+AGG - chr1.2:29810788-29810807 None:intergenic 45.0%
!!! GATCCCCGCCGTTTTATTTT+AGG + chr1.2:29811407-29811426 MS.gene061767:intron 45.0%
!! AAAAAAAAAAAATTTAATTG+GGG - chr1.2:29809855-29809874 None:intergenic 5.0%
ATTCGTCGAGATCGATGCTG+AGG - chr1.2:29810915-29810934 None:intergenic 50.0%
CAACACCGACAGTCTCGATA+AGG - chr1.2:29811159-29811178 None:intergenic 50.0%
CTGATCCCCTGTTACTGTAC+TGG + chr1.2:29810489-29810508 MS.gene061767:intron 50.0%
GATAGAAGGCAACGCTGAGT+AGG - chr1.2:29810938-29810957 None:intergenic 50.0%
GGTATCTTTCGTCGGAAGGA+AGG - chr1.2:29809731-29809750 None:intergenic 50.0%
GTCTCGTGTCTGAGCTATTG+CGG + chr1.2:29810593-29810612 MS.gene061767:intron 50.0%
GTGACGGTGGTATCTTTCGT+CGG - chr1.2:29809739-29809758 None:intergenic 50.0%
GTGAGAGGATTGAGAGGAGA+GGG - chr1.2:29809958-29809977 None:intergenic 50.0%
GTGAGTTGTGAGAGGAAGAG+TGG - chr1.2:29809787-29809806 None:intergenic 50.0%
TGAGAGGATTGAGAGGAGAG+GGG - chr1.2:29809957-29809976 None:intergenic 50.0%
TGTGAGAGGATTGAGAGGAG+AGG - chr1.2:29809959-29809978 None:intergenic 50.0%
TTCGTCGAGATCGATGCTGA+GGG - chr1.2:29810914-29810933 None:intergenic 50.0%
! ACGGCTCCCCCCAATATTTT+CGG + chr1.2:29810683-29810702 MS.gene061767:CDS 50.0%
! GTTTCCAGCTCCTCTAGAAG+GGG - chr1.2:29811114-29811133 None:intergenic 50.0%
!! TTCAAACAGGTGGGAGCGTT+TGG - chr1.2:29810754-29810773 None:intergenic 50.0%
AAGTTGAGGGTGAGCAGTGG+CGG - chr1.2:29810715-29810734 None:intergenic 55.0%
ACAAGTGGTGCCCCTACAAC+TGG + chr1.2:29811287-29811306 MS.gene061767:CDS 55.0%
ACTCTCTCTCGGCTGTCTCT+CGG + chr1.2:29809928-29809947 MS.gene061767:intron 55.0%
CAATAGAGATCCGCCCCTGA+GGG - chr1.2:29809809-29809828 None:intergenic 55.0%
CCTCTCACAACTCACCCTCA+GGG + chr1.2:29809792-29809811 MS.gene061767:CDS 55.0%
CGCTGAAGGTGAAGAGTGAG+AGG - chr1.2:29809999-29810018 None:intergenic 55.0%
CGGTGGTATCTTTCGTCGGA+AGG - chr1.2:29809735-29809754 None:intergenic 55.0%
CTCTCACAACTCACCCTCAG+GGG + chr1.2:29809793-29809812 MS.gene061767:CDS 55.0%
GAGAGGATTGAGAGGAGAGG+GGG - chr1.2:29809956-29809975 None:intergenic 55.0%
GGATCTCTATTGAGACCCCC+AGG + chr1.2:29809817-29809836 MS.gene061767:CDS 55.0%
GTTGAATGCCCTAGCCTCTG+CGG - chr1.2:29809643-29809662 None:intergenic 55.0%
TCAATAGAGATCCGCCCCTG+AGG - chr1.2:29809810-29809829 None:intergenic 55.0%
TCCTCTCACAACTCACCCTC+AGG + chr1.2:29809791-29809810 MS.gene061767:CDS 55.0%
TCGAAGTTGAGGGTGAGCAG+TGG - chr1.2:29810718-29810737 None:intergenic 55.0%
TGAGAGAAGGCTTGTGACGG+TGG - chr1.2:29809752-29809771 None:intergenic 55.0%
TTGAATGCCCTAGCCTCTGC+GGG - chr1.2:29809642-29809661 None:intergenic 55.0%
!! GTTGTAGGGGCACCACTTGT+AGG - chr1.2:29811287-29811306 None:intergenic 55.0%
ATGTGGAGGCAGCAGCAGCA+CGG + chr1.2:29810061-29810080 MS.gene061767:intron 60.0%
CCCTGAGGGTGAGTTGTGAG+AGG - chr1.2:29809795-29809814 None:intergenic 60.0%
CTTCACCTTCAGCGACGCGA+CGG + chr1.2:29810005-29810024 MS.gene061767:intron 60.0%
GGACGACGGCAAGTGCATCA+CGG + chr1.2:29810033-29810052 MS.gene061767:intron 60.0%
TCACAACTCACCCTCAGGGG+CGG + chr1.2:29809796-29809815 MS.gene061767:CDS 60.0%
TGAATGCCCTAGCCTCTGCG+GGG - chr1.2:29809641-29809660 None:intergenic 60.0%
TTCACCTTCAGCGACGCGAC+GGG + chr1.2:29810006-29810025 MS.gene061767:intron 60.0%
! GGAGCATCTGCGCCTACAAG+TGG + chr1.2:29811272-29811291 MS.gene061767:CDS 60.0%
! GGTTCCCCTTCTAGAGGAGC+TGG + chr1.2:29811107-29811126 MS.gene061767:CDS 60.0%
! GTCTGGGGTTCCCCTTCTAG+AGG + chr1.2:29811101-29811120 MS.gene061767:CDS 60.0%
AGTGCATCACGGCGGCGATG+TGG + chr1.2:29810044-29810063 MS.gene061767:intron 65.0%
CGACGGCAAGTGCATCACGG+CGG + chr1.2:29810036-29810055 MS.gene061767:intron 65.0%
! ATTGAGACCCCCAGGTGCCG+TGG + chr1.2:29809825-29809844 MS.gene061767:intron 65.0%
GCATCACGGCGGCGATGTGG+AGG + chr1.2:29810047-29810066 MS.gene061767:intron 70.0%
TTCAGCGACGCGACGGGCGA+CGG + chr1.2:29810012-29810031 MS.gene061767:intron 70.0%
ACGCGACGGGCGACGGACGA+CGG + chr1.2:29810019-29810038 MS.gene061767:intron 75.0%
GTCGCCCGTCGCGTCGCTGA+AGG - chr1.2:29810013-29810032 None:intergenic 75.0%
!! TGGGGGGTGCCACGGCACCT+GGG - chr1.2:29809837-29809856 None:intergenic 75.0%
!! TTGGGGGGTGCCACGGCACC+TGG - chr1.2:29809838-29809857 None:intergenic 75.0%
!!! GGGGGGTGCCACGGCACCTG+GGG - chr1.2:29809836-29809855 None:intergenic 80.0%
!!! GGGGGTGCCACGGCACCTGG+GGG - chr1.2:29809835-29809854 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 29809634 29811437 29809634 ID=MS.gene061767
chr1.2 mRNA 29809634 29811437 29809634 ID=MS.gene061767.t1;Parent=MS.gene061767
chr1.2 exon 29809634 29809838 29809634 ID=MS.gene061767.t1.exon1;Parent=MS.gene061767.t1
chr1.2 CDS 29809634 29809838 29809634 ID=cds.MS.gene061767.t1;Parent=MS.gene061767.t1
chr1.2 exon 29810674 29811308 29810674 ID=MS.gene061767.t1.exon2;Parent=MS.gene061767.t1
chr1.2 CDS 29810674 29811308 29810674 ID=cds.MS.gene061767.t1;Parent=MS.gene061767.t1
chr1.2 exon 29811429 29811437 29811429 ID=MS.gene061767.t1.exon3;Parent=MS.gene061767.t1
chr1.2 CDS 29811429 29811437 29811429 ID=cds.MS.gene061767.t1;Parent=MS.gene061767.t1
Gene Sequence

>MS.gene061767

ATGTCCCCGCAGAGGCTAGGGCATTCAACTCTAGAAGAAGAAGACGACGACATAATCAGTGCACTGTCGGATCCCCTTCTTCATCACATTCTTTCCTTCCTTCCGACGAAAGATACCACCGTCACAAGCCTTCTCTCAAAGAGATGGAAACCACTCTTCCTCTCACAACTCACCCTCAGGGGCGGATCTCTATTGAGACCCCCAGGTGCCGTGGCACCCCCCAATTAAATTTTTTTTTTTTTTTATACACAGAAAACTACTATTGTACCCTGAGTTCACATTTGTTTTTGTCTTACTCTCTCTCGGCTGTCTCTCGGTACCCCCTCTCCTCTCAATCCTCTCACATATCAAAGTGATTCTCACCTCTCACTCTTCACCTTCAGCGACGCGACGGGCGACGGACGACGGCAAGTGCATCACGGCGGCGATGTGGAGGCAGCAGCAGCACGGTGCTCCTCTGAACTCTCATACACCTCACTTCAGTTTGTTATTTTCTTGATTTTCACTTCAGGTTTGTTCTTCTCCCTATCATTCTATGTTTCATTCCTTTGATTTTGATTCCTTTCACAGTTTCACTTCAGTTTGTTCTCTTAAAAGTTATAATTTCATTCCTTTGATTTGATTCCTTTCACTTCAGTTTGCTTGAACAGTTGAACCCTGTAAATAAAAAATTGGGGGAAACTTAATCCTTGATTTTCTATGTTGTTTGATTCAATTCTGTTATATTCCTATGTTGCTGATTCAATTCAATTCTATTTTTAGAACTTAGAACATAATGGCTTAATTCATATTTTGAACAAGACTTGATTTTGTACTGTACTGGTTGTTACTCTCTGTTTTGTTACTCTCTTGTTGCTGATCCCCTGTTACTGTACTGGTTGTTACTCTCAATTCTAGTTTGATTTGTTACTTGTAATTTATGTGTGAATTGTGCATTTTATAGTATATTTGGAGCTTTAGTCTCGTGTCTGAGCTATTGCGGTGATATTTTTTGGATGAAATTGTATATAACTTTTATGAATTTCAATTATAATATTTAGTTCATATTTACGGCTCCCCCCAATATTTTCGGCAAGATCCGCCACTGCTCACCCTCAACTTCGATGACAAAGACTTTCCAAACGCTCCCACCTGTTTGAAATTCTTCAACTCCTGCATCACCAACCGATATAACACTGTACCCATCCTCTCATTAAACCTTAAATGCCGCAAATTCTCTAGGCGTGAAATCCAAACTTTTATTGACGGTGCAATAGTAAACCTTACAAACCTTAAAACCCTCAGCATCGATCTCGACGAATCCTACTCAGCGTTGCCTTCTATCGTTCTAACTATCAAAACCTTGTCTGTCCTCAAATTGAACTGCGTAACATTGGACGATGTTCCACAGGTTCATCTTCCCTTACTCAAAGCACTTCACATGGAATATGTCACTTTTAAAAGTCATGAACATCTCTGGAAACTTCTGTCTGGGGTTCCCCTTCTAGAGGAGCTGGAAACAAAGCATTTAATCGTAAAAACACCTTATCGAGACTGTCGGTGTTGTTCACATTCACAAAGACGTGTTGCATGCTTTTCCAAGTTGGTGAAAGCTAACATTCGTGATAAGTATTCTTTGTTTGATTGGTTTCATAACGTGGAGCATCTGCGCCTACAAGTGGTGCCCCTACAACTGGTATGTCTTCTGCCAGTTTTCAAATTATTGTCATCACTTGTTGTTTTAGTTATTGTCACCATTAAGAAAAAAATCACTGCACATGTGGGAGAATTCTTGATCCCCGCCGTTTTATTTTAGGAATGTTAG
Protein sequence

>MS.gene061767.t1

MSPQRLGHSTLEEEDDDIISALSDPLLHHILSFLPTKDTTVTSLLSKRWKPLFLSQLTLRGGSLLRPPVHIYGSPQYFRQDPPLLTLNFDDKDFPNAPTCLKFFNSCITNRYNTVPILSLNLKCRKFSRREIQTFIDGAIVNLTNLKTLSIDLDESYSALPSIVLTIKTLSVLKLNCVTLDDVPQVHLPLLKALHMEYVTFKSHEHLWKLLSGVPLLEELETKHLIVKTPYRDCRCCSHSQRRVACFSKLVKANIRDKYSLFDWFHNVEHLRLQVVPLQLEC