Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69561.t1 | XP_003599874.2 | 74.7 | 419 | 43 | 4 | 89 | 444 | 1 | 419 | 1.50E-161 | 579.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69561.t1 | Q3EA38 | 28.3 | 258 | 140 | 4 | 111 | 343 | 14 | 251 | 3.2e-19 | 97.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69561.t1 | G7IXZ7 | 74.7 | 419 | 43 | 4 | 89 | 444 | 1 | 419 | 1.1e-161 | 579.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69561.t1 | MTR_3g048290 | 74.702 | 419 | 43 | 4 | 89 | 444 | 1 | 419 | 0.0 | 572 |
MS.gene69561.t1 | MTR_4g080787 | 57.007 | 421 | 102 | 7 | 95 | 444 | 6 | 418 | 4.02e-140 | 410 |
MS.gene69561.t1 | MTR_4g080773 | 55.819 | 421 | 110 | 7 | 95 | 444 | 6 | 421 | 1.35e-136 | 402 |
MS.gene69561.t1 | MTR_4g080773 | 55.819 | 421 | 110 | 7 | 95 | 444 | 6 | 421 | 1.67e-136 | 402 |
MS.gene69561.t1 | MTR_5g039950 | 46.277 | 376 | 180 | 5 | 89 | 444 | 1 | 374 | 1.12e-93 | 289 |
MS.gene69561.t1 | MTR_4g080590 | 42.206 | 417 | 169 | 8 | 89 | 444 | 1 | 406 | 2.31e-83 | 264 |
MS.gene69561.t1 | MTR_4g130200 | 46.479 | 355 | 178 | 6 | 89 | 442 | 1 | 344 | 7.27e-80 | 253 |
MS.gene69561.t1 | MTR_4g080807 | 53.676 | 272 | 108 | 4 | 178 | 444 | 28 | 286 | 7.39e-79 | 251 |
MS.gene69561.t1 | MTR_4g080590 | 42.246 | 374 | 144 | 9 | 89 | 401 | 1 | 363 | 2.86e-71 | 230 |
MS.gene69561.t1 | MTR_5g039970 | 44.164 | 317 | 113 | 6 | 93 | 346 | 1 | 316 | 5.67e-68 | 220 |
MS.gene69561.t1 | MTR_7g023310 | 39.480 | 423 | 180 | 9 | 89 | 444 | 1 | 414 | 3.39e-65 | 216 |
MS.gene69561.t1 | MTR_7g039630 | 39.370 | 381 | 127 | 7 | 89 | 403 | 1 | 343 | 3.20e-63 | 208 |
MS.gene69561.t1 | MTR_7g023330 | 37.275 | 389 | 168 | 8 | 94 | 444 | 3 | 353 | 1.14e-56 | 192 |
MS.gene69561.t1 | MTR_2g094750 | 36.605 | 377 | 149 | 11 | 109 | 399 | 88 | 460 | 1.01e-46 | 168 |
MS.gene69561.t1 | MTR_4g081030 | 36.527 | 334 | 132 | 9 | 101 | 371 | 7 | 323 | 1.57e-40 | 149 |
MS.gene69561.t1 | MTR_4g080813 | 63.529 | 85 | 30 | 1 | 93 | 176 | 1 | 85 | 4.81e-28 | 107 |
MS.gene69561.t1 | MTR_8g467800 | 26.988 | 415 | 216 | 12 | 102 | 444 | 11 | 410 | 2.82e-27 | 114 |
MS.gene69561.t1 | MTR_8g467800 | 26.846 | 298 | 158 | 7 | 102 | 342 | 11 | 305 | 2.34e-18 | 86.3 |
MS.gene69561.t1 | MTR_8g062270 | 27.007 | 411 | 214 | 15 | 108 | 444 | 13 | 411 | 4.17e-17 | 83.6 |
MS.gene69561.t1 | MTR_7g007340 | 27.095 | 358 | 188 | 16 | 111 | 448 | 13 | 317 | 4.20e-17 | 82.8 |
MS.gene69561.t1 | MTR_3g107100 | 26.703 | 367 | 190 | 13 | 107 | 434 | 7 | 333 | 1.07e-16 | 82.0 |
MS.gene69561.t1 | MTR_5g080710 | 25.183 | 409 | 230 | 16 | 94 | 444 | 17 | 407 | 1.41e-16 | 82.0 |
MS.gene69561.t1 | MTR_5g084070 | 27.136 | 398 | 215 | 12 | 102 | 444 | 4 | 381 | 2.17e-16 | 81.3 |
MS.gene69561.t1 | MTR_0049s0110 | 27.041 | 392 | 214 | 18 | 106 | 444 | 1 | 373 | 6.50e-16 | 79.7 |
MS.gene69561.t1 | MTR_4g032730 | 24.582 | 419 | 229 | 11 | 107 | 444 | 11 | 423 | 1.51e-15 | 79.0 |
MS.gene69561.t1 | MTR_7g007370 | 31.333 | 300 | 127 | 15 | 111 | 398 | 17 | 249 | 9.36e-15 | 75.5 |
MS.gene69561.t1 | MTR_0049s0110 | 27.492 | 331 | 191 | 15 | 106 | 398 | 1 | 320 | 1.41e-14 | 75.1 |
MS.gene69561.t1 | MTR_0049s0110 | 27.492 | 331 | 191 | 15 | 106 | 398 | 1 | 320 | 1.73e-14 | 74.7 |
MS.gene69561.t1 | MTR_2g007360 | 27.217 | 327 | 159 | 15 | 111 | 415 | 12 | 281 | 2.90e-14 | 74.3 |
MS.gene69561.t1 | MTR_5g073340 | 27.596 | 337 | 185 | 14 | 111 | 429 | 8 | 303 | 8.77e-14 | 72.4 |
MS.gene69561.t1 | MTR_2g007500 | 30.508 | 177 | 96 | 5 | 111 | 264 | 14 | 186 | 1.84e-13 | 71.6 |
MS.gene69561.t1 | MTR_5g008950 | 25.352 | 355 | 208 | 13 | 113 | 444 | 1 | 321 | 1.99e-13 | 72.0 |
MS.gene69561.t1 | MTR_7g026500 | 25.330 | 379 | 197 | 12 | 111 | 444 | 14 | 351 | 2.37e-13 | 72.0 |
MS.gene69561.t1 | MTR_0049s0110 | 28.731 | 268 | 147 | 12 | 106 | 339 | 1 | 258 | 3.59e-13 | 70.1 |
MS.gene69561.t1 | MTR_3g023270 | 27.368 | 190 | 114 | 3 | 102 | 267 | 3 | 192 | 2.07e-12 | 68.6 |
MS.gene69561.t1 | MTR_7g098570 | 24.548 | 387 | 180 | 14 | 111 | 444 | 20 | 347 | 3.21e-12 | 68.6 |
MS.gene69561.t1 | MTR_4g050940 | 28.182 | 330 | 174 | 17 | 111 | 401 | 67 | 372 | 3.58e-12 | 68.9 |
MS.gene69561.t1 | MTR_4g103670 | 26.166 | 386 | 219 | 19 | 107 | 444 | 21 | 388 | 7.70e-12 | 67.4 |
MS.gene69561.t1 | MTR_3g108560 | 32.143 | 196 | 102 | 9 | 105 | 277 | 14 | 201 | 8.51e-12 | 66.2 |
MS.gene69561.t1 | MTR_3g108560 | 33.163 | 196 | 100 | 10 | 105 | 277 | 14 | 201 | 1.30e-11 | 66.2 |
MS.gene69561.t1 | MTR_5g045510 | 29.348 | 184 | 97 | 4 | 111 | 264 | 12 | 192 | 1.69e-11 | 65.9 |
MS.gene69561.t1 | MTR_7g098480 | 24.603 | 378 | 221 | 13 | 95 | 444 | 2 | 343 | 3.30e-11 | 65.5 |
MS.gene69561.t1 | MTR_3g023630 | 23.989 | 371 | 199 | 13 | 111 | 444 | 8 | 332 | 3.34e-11 | 65.1 |
MS.gene69561.t1 | MTR_7g056430 | 29.000 | 300 | 161 | 13 | 111 | 398 | 9 | 268 | 4.92e-11 | 65.5 |
MS.gene69561.t1 | MTR_7g056420 | 29.000 | 300 | 161 | 13 | 111 | 398 | 9 | 268 | 4.99e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene69561.t1 | AT5G60610 | 27.632 | 380 | 221 | 13 | 111 | 444 | 2 | 373 | 6.43e-23 | 100 |
MS.gene69561.t1 | AT5G60610 | 27.632 | 380 | 221 | 13 | 111 | 444 | 2 | 373 | 6.43e-23 | 100 |
MS.gene69561.t1 | AT1G66290 | 30.247 | 324 | 158 | 12 | 108 | 371 | 26 | 341 | 6.66e-21 | 95.1 |
MS.gene69561.t1 | AT1G78750 | 27.941 | 408 | 208 | 16 | 111 | 444 | 18 | 413 | 2.69e-20 | 93.6 |
MS.gene69561.t1 | AT1G78750 | 27.941 | 408 | 208 | 16 | 111 | 444 | 18 | 413 | 2.69e-20 | 93.6 |
MS.gene69561.t1 | AT3G58900 | 25.971 | 412 | 220 | 12 | 111 | 442 | 2 | 408 | 5.41e-19 | 89.7 |
MS.gene69561.t1 | AT3G26922 | 34.545 | 165 | 85 | 3 | 111 | 263 | 14 | 167 | 6.87e-19 | 87.0 |
MS.gene69561.t1 | AT3G50710 | 29.612 | 206 | 110 | 5 | 111 | 282 | 2 | 206 | 2.17e-18 | 87.4 |
MS.gene69561.t1 | AT5G38590 | 30.233 | 258 | 126 | 8 | 111 | 315 | 2 | 258 | 2.78e-18 | 85.5 |
MS.gene69561.t1 | AT5G22610 | 28.338 | 367 | 201 | 15 | 109 | 425 | 16 | 370 | 8.96e-18 | 85.9 |
MS.gene69561.t1 | AT5G38590 | 30.233 | 258 | 126 | 8 | 111 | 315 | 2 | 258 | 1.22e-17 | 85.1 |
MS.gene69561.t1 | AT1G55030 | 31.522 | 184 | 101 | 4 | 104 | 263 | 2 | 184 | 9.66e-16 | 79.3 |
MS.gene69561.t1 | AT4G15060 | 31.132 | 212 | 112 | 5 | 105 | 282 | 18 | 229 | 9.85e-16 | 79.3 |
MS.gene69561.t1 | AT1G55030 | 31.522 | 184 | 101 | 4 | 104 | 263 | 12 | 194 | 1.28e-15 | 79.0 |
MS.gene69561.t1 | AT5G52460 | 35.762 | 151 | 90 | 2 | 110 | 260 | 16 | 159 | 2.30e-15 | 77.8 |
MS.gene69561.t1 | AT1G66310 | 26.796 | 362 | 197 | 12 | 99 | 401 | 7 | 359 | 2.34e-15 | 78.2 |
MS.gene69561.t1 | AT4G15060 | 30.882 | 204 | 109 | 4 | 111 | 282 | 172 | 375 | 3.23e-15 | 78.2 |
MS.gene69561.t1 | AT3G60040 | 25.272 | 368 | 180 | 13 | 110 | 398 | 12 | 363 | 4.29e-15 | 78.2 |
MS.gene69561.t1 | AT3G60040 | 25.341 | 367 | 179 | 13 | 111 | 398 | 233 | 583 | 5.11e-15 | 78.2 |
MS.gene69561.t1 | AT3G60040 | 25.745 | 369 | 175 | 13 | 111 | 398 | 232 | 582 | 5.44e-15 | 78.2 |
MS.gene69561.t1 | AT3G60040 | 25.745 | 369 | 175 | 13 | 111 | 398 | 232 | 582 | 5.62e-15 | 77.8 |
MS.gene69561.t1 | AT3G60040 | 25.745 | 369 | 175 | 13 | 111 | 398 | 230 | 580 | 5.66e-15 | 77.8 |
MS.gene69561.t1 | AT4G22280 | 26.685 | 356 | 170 | 12 | 111 | 400 | 2 | 332 | 5.81e-15 | 77.0 |
MS.gene69561.t1 | AT2G29930 | 27.520 | 367 | 174 | 14 | 111 | 407 | 12 | 356 | 1.01e-14 | 76.3 |
MS.gene69561.t1 | AT2G29930 | 27.520 | 367 | 174 | 14 | 111 | 407 | 12 | 356 | 1.01e-14 | 76.3 |
MS.gene69561.t1 | AT5G53840 | 26.016 | 369 | 208 | 13 | 110 | 425 | 17 | 373 | 1.66e-14 | 75.9 |
MS.gene69561.t1 | AT5G22610 | 25.693 | 397 | 203 | 14 | 109 | 425 | 16 | 400 | 2.67e-14 | 75.5 |
MS.gene69561.t1 | AT4G22280 | 26.554 | 354 | 169 | 12 | 111 | 398 | 2 | 330 | 2.72e-14 | 74.3 |
MS.gene69561.t1 | AT5G56820 | 29.775 | 178 | 103 | 3 | 110 | 265 | 14 | 191 | 1.44e-13 | 72.8 |
MS.gene69561.t1 | AT3G51530 | 28.788 | 198 | 115 | 5 | 110 | 282 | 29 | 225 | 2.23e-13 | 72.4 |
MS.gene69561.t1 | AT3G58900 | 26.437 | 261 | 130 | 7 | 111 | 310 | 2 | 261 | 3.95e-13 | 70.5 |
MS.gene69561.t1 | AT3G58900 | 26.437 | 261 | 130 | 7 | 111 | 310 | 2 | 261 | 3.95e-13 | 70.5 |
MS.gene69561.t1 | AT3G58900 | 26.437 | 261 | 130 | 7 | 111 | 310 | 2 | 261 | 3.98e-13 | 70.5 |
MS.gene69561.t1 | AT1G50980 | 31.638 | 177 | 101 | 6 | 99 | 267 | 20 | 184 | 1.43e-12 | 69.3 |
MS.gene69561.t1 | AT5G22730 | 25.610 | 410 | 213 | 15 | 111 | 444 | 28 | 421 | 3.10e-12 | 68.9 |
MS.gene69561.t1 | AT5G22730 | 25.610 | 410 | 213 | 15 | 111 | 444 | 28 | 421 | 3.10e-12 | 68.9 |
MS.gene69561.t1 | AT5G56420 | 31.868 | 182 | 95 | 7 | 110 | 263 | 5 | 185 | 7.32e-11 | 64.3 |
MS.gene69561.t1 | AT5G56420 | 31.868 | 182 | 95 | 7 | 110 | 263 | 5 | 185 | 7.32e-11 | 64.3 |
MS.gene69561.t1 | AT5G56420 | 31.868 | 182 | 95 | 7 | 110 | 263 | 5 | 185 | 7.32e-11 | 64.3 |
Find 76 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTCAGGAACATCACAATTT+TGG | 0.180082 | 3.1:-33863744 | None:intergenic |
TTTCCACTTCTTTGCTAATA+TGG | 0.194272 | 3.1:-33864919 | None:intergenic |
TCTTCGAAAGACTCCTAAAT+TGG | 0.226792 | 3.1:+33865996 | MS.gene69561:CDS |
ACAGGGATAAATTCTATTAT+TGG | 0.228954 | 3.1:-33865561 | None:intergenic |
ACTAGGGAGGTCAGGTTAAC+AGG | 0.276184 | 3.1:-33865579 | None:intergenic |
TTGGCTAGCTCGGGTGGTTT+TGG | 0.293534 | 3.1:+33864061 | MS.gene69561:CDS |
AACCGTTTGAAGGACAATTT+AGG | 0.304668 | 3.1:-33863709 | None:intergenic |
ATTGTAAGATCTTCCAATTT+AGG | 0.334245 | 3.1:-33866009 | None:intergenic |
CAGTTCGTGTGCTCCGGTTC+AGG | 0.341708 | 3.1:-33863760 | None:intergenic |
TTGGAAGATCTTACAATTCC+CGG | 0.345324 | 3.1:+33866015 | MS.gene69561:CDS |
TCATTAAATGAATTGCGTTT+AGG | 0.349692 | 3.1:+33865237 | MS.gene69561:CDS |
TGCACATCGGTTGATGAGAT+TGG | 0.364438 | 3.1:-33864783 | None:intergenic |
CTACTCATGTTGAAAGGCTT+TGG | 0.372889 | 3.1:+33865066 | MS.gene69561:CDS |
GATGCAGAGTATCCAATATA+TGG | 0.388298 | 3.1:-33865885 | None:intergenic |
CACTTCCAGTTCGTGTGCTC+CGG | 0.395228 | 3.1:-33863766 | None:intergenic |
GTTGATGCAATCATTGATCT+TGG | 0.395966 | 3.1:+33865600 | MS.gene69561:CDS |
TGTCTTACAAGAGTTGGAAT+TGG | 0.404698 | 3.1:+33865380 | MS.gene69561:CDS |
TGATTAGGTACTTAACTACT+TGG | 0.425971 | 3.1:+33866135 | MS.gene69561:intron |
TTGAAAATTGAACCGTTTGA+AGG | 0.432924 | 3.1:-33863719 | None:intergenic |
ATTACTAATGTCTTCAAGCT+AGG | 0.434187 | 3.1:-33865300 | None:intergenic |
GATAAATTCTATTATTGGTA+TGG | 0.438106 | 3.1:-33865556 | None:intergenic |
TGGAAAGGAGAAGAAAGAAA+AGG | 0.440968 | 3.1:+33863668 | MS.gene69561:CDS |
GGTATGCTGCTGTCAGCTGC+TGG | 0.447054 | 3.1:+33864145 | MS.gene69561:CDS |
CTGAACCGGAGCACACGAAC+TGG | 0.447936 | 3.1:+33863761 | MS.gene69561:CDS |
AATTGCCTCTTAGATCTAGT+TGG | 0.454657 | 3.1:+33865026 | MS.gene69561:CDS |
GAACGTTAGTGCATTTGTAA+TGG | 0.455122 | 3.1:+33865969 | MS.gene69561:CDS |
AAATTGTGATGTTCCTGAAC+CGG | 0.468240 | 3.1:+33863747 | MS.gene69561:CDS |
GGAAAGGAGAAGAAAGAAAA+GGG | 0.480826 | 3.1:+33863669 | MS.gene69561:CDS |
AACCTAAATTGTCCTTCAAA+CGG | 0.483203 | 3.1:+33863707 | MS.gene69561:CDS |
GTGTTCAATTGAGCTATTGA+AGG | 0.484023 | 3.1:+33865659 | MS.gene69561:CDS |
AATTCCAACTCTTGTAAGAC+AGG | 0.484769 | 3.1:-33865378 | None:intergenic |
ATTGAACACTGAGCAGCATA+TGG | 0.489422 | 3.1:-33865645 | None:intergenic |
ATTGAGCTATTGAAGGGACT+TGG | 0.497912 | 3.1:+33865666 | MS.gene69561:CDS |
ACTAAATAATATTATTCTTG+AGG | 0.498815 | 3.1:+33865707 | MS.gene69561:CDS |
TGTAAAATGTAGGAAGAGGA+AGG | 0.506844 | 3.1:-33865909 | None:intergenic |
TTGCATCAACTAGGGAGGTC+AGG | 0.512234 | 3.1:-33865587 | None:intergenic |
TTGATGCAATCATTGATCTT+GGG | 0.514126 | 3.1:+33865601 | MS.gene69561:CDS |
CAGGTAGCACAGGTCATGGC+TGG | 0.518193 | 3.1:+33864759 | MS.gene69561:intron |
AAAATGAAAGGCAGATAAGT+AGG | 0.518650 | 3.1:-33864952 | None:intergenic |
TGTCATCCACATTATGTCGT+TGG | 0.519049 | 3.1:-33864812 | None:intergenic |
TGATCAGGTAGCACAGGTCA+TGG | 0.525830 | 3.1:+33864755 | MS.gene69561:intron |
CTTCCATATTAGCAAAGAAG+TGG | 0.526172 | 3.1:+33864916 | MS.gene69561:CDS |
AGTAGCTGTGTTATGTGTGT+TGG | 0.526960 | 3.1:+33864124 | MS.gene69561:CDS |
TGTGTCAAATTGTAAAATGT+AGG | 0.532490 | 3.1:-33865919 | None:intergenic |
GTCTTCCAACTAGATCTAAG+AGG | 0.539951 | 3.1:-33865031 | None:intergenic |
TTACTAATGTCTTCAAGCTA+GGG | 0.545746 | 3.1:-33865299 | None:intergenic |
AGCCGAGTTCTCATTTGCAA+AGG | 0.555852 | 3.1:-33865334 | None:intergenic |
ATCAATGATTGCATCAACTA+GGG | 0.559437 | 3.1:-33865595 | None:intergenic |
GTGCCCTGTCTTACAAGAGT+TGG | 0.561158 | 3.1:+33865374 | MS.gene69561:CDS |
AATGTAAAACATACCACTCC+GGG | 0.562438 | 3.1:-33866033 | None:intergenic |
ATACGAAGAAGAACTCCCTC+AGG | 0.563276 | 3.1:-33864858 | None:intergenic |
ACTACAAGTTTGAAAATGAA+AGG | 0.563867 | 3.1:-33864964 | None:intergenic |
AAATTGTAAAATGTAGGAAG+AGG | 0.569437 | 3.1:-33865913 | None:intergenic |
GATCAATGATTGCATCAACT+AGG | 0.571932 | 3.1:-33865596 | None:intergenic |
TACCTTTGCAAATGAGAACT+CGG | 0.572942 | 3.1:+33865332 | MS.gene69561:CDS |
CTAGGGAAACAAATACCACT+AGG | 0.574672 | 3.1:-33865282 | None:intergenic |
CTAGGGAGGTCAGGTTAACA+GGG | 0.575242 | 3.1:-33865578 | None:intergenic |
TAAGATCCAACGACATAATG+TGG | 0.578294 | 3.1:+33864806 | MS.gene69561:CDS |
TGTTCAATTGAGCTATTGAA+GGG | 0.579270 | 3.1:+33865660 | MS.gene69561:CDS |
TACTGACAGCAGCATACTCA+CGG | 0.586553 | 3.1:-33864105 | None:intergenic |
CAAAGAAGTGGAAACACTTG+TGG | 0.593332 | 3.1:+33864928 | MS.gene69561:CDS |
ACAAATCTACTCATGTTGAA+AGG | 0.598111 | 3.1:+33865060 | MS.gene69561:CDS |
GCAATCATTGATCTTGGGTG+CGG | 0.612056 | 3.1:+33865606 | MS.gene69561:CDS |
GAATGTAAAACATACCACTC+CGG | 0.616888 | 3.1:-33866034 | None:intergenic |
AGAGAAGATTTGAAACAGCA+CGG | 0.623714 | 3.1:-33866187 | None:intergenic |
GCAGCATATGGTTCATCATG+TGG | 0.629448 | 3.1:-33865633 | None:intergenic |
TCGAAAGCAGCGAAACTATG+TGG | 0.631102 | 3.1:-33865213 | None:intergenic |
ATGATTAGTGACTTACCTGA+GGG | 0.645612 | 3.1:+33864843 | MS.gene69561:CDS |
ATTTGACACATCTCTATGTG+TGG | 0.652801 | 3.1:+33865932 | MS.gene69561:CDS |
GTTACATAGAGAGAATGGAA+AGG | 0.662598 | 3.1:+33863653 | None:intergenic |
AGATCTTACAATTCCCGGAG+TGG | 0.664258 | 3.1:+33866020 | MS.gene69561:CDS |
TCGTTGGATCTTATGCACAT+CGG | 0.665599 | 3.1:-33864796 | None:intergenic |
TATGATTAGTGACTTACCTG+AGG | 0.680555 | 3.1:+33864842 | MS.gene69561:CDS |
AATGATTGCATCAACTAGGG+AGG | 0.681703 | 3.1:-33865592 | None:intergenic |
ATTCCAACTCTTGTAAGACA+GGG | 0.695262 | 3.1:-33865377 | None:intergenic |
TTCACTCTACACATTCCTAG+TGG | 0.705572 | 3.1:+33865267 | MS.gene69561:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAAAATGTAAACTAATA+AGG | - | chr3.1:33864716-33864735 | None:intergenic | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863946-33863965 | MS.gene69561:intron | 100.0% |
!! | ACTAAATAATATTATTCTTG+AGG | + | chr3.1:33865707-33865726 | MS.gene69561:CDS | 15.0% |
!!! | TTATGCTTTTTAAATTTTCA+TGG | + | chr3.1:33866217-33866236 | MS.gene69561:CDS | 15.0% |
!! | AGTTACAAGTAAAAAAAGAA+GGG | - | chr3.1:33864686-33864705 | None:intergenic | 20.0% |
!! | ATGTAAACTAATAAGGATTA+AGG | - | chr3.1:33864709-33864728 | None:intergenic | 20.0% |
!! | GATAAATTCTATTATTGGTA+TGG | - | chr3.1:33865559-33865578 | None:intergenic | 20.0% |
!! | TATGGTAAAAAGACTAATAA+TGG | - | chr3.1:33865870-33865889 | None:intergenic | 20.0% |
!!! | ATGAGTAATATTTAAAACCT+TGG | - | chr3.1:33863813-33863832 | None:intergenic | 20.0% |
!!! | GGAAAACAATGATATTATTT+TGG | + | chr3.1:33866088-33866107 | MS.gene69561:intron | 20.0% |
!!! | TAATATTTAAAACCTTGGAT+GGG | - | chr3.1:33863808-33863827 | None:intergenic | 20.0% |
!!! | TTAGTCTTTTTACCATATAT+TGG | + | chr3.1:33865873-33865892 | MS.gene69561:intron | 20.0% |
!!! | TTGATTTACTATTTTTGATC+AGG | + | chr3.1:33864740-33864759 | MS.gene69561:intron | 20.0% |
! | AAATTGTAAAATGTAGGAAG+AGG | - | chr3.1:33865916-33865935 | None:intergenic | 25.0% |
! | ACAGGGATAAATTCTATTAT+TGG | - | chr3.1:33865564-33865583 | None:intergenic | 25.0% |
! | ACTACAAGTTTGAAAATGAA+AGG | - | chr3.1:33864967-33864986 | None:intergenic | 25.0% |
! | ACTGCAAATATTATTAAACC+CGG | - | chr3.1:33864498-33864517 | None:intergenic | 25.0% |
! | ATTGTAAGATCTTCCAATTT+AGG | - | chr3.1:33866012-33866031 | None:intergenic | 25.0% |
! | CTCATTATTCTATACATACT+TGG | + | chr3.1:33863828-33863847 | MS.gene69561:intron | 25.0% |
! | GAGTTACAAGTAAAAAAAGA+AGG | - | chr3.1:33864687-33864706 | None:intergenic | 25.0% |
! | GTATCTTAATTTCCACATTA+AGG | + | chr3.1:33865436-33865455 | MS.gene69561:intron | 25.0% |
! | TCATTAAATGAATTGCGTTT+AGG | + | chr3.1:33865237-33865256 | MS.gene69561:CDS | 25.0% |
! | TGCAGTTCAAAAAAAATACT+TGG | + | chr3.1:33864512-33864531 | MS.gene69561:intron | 25.0% |
! | TGGAATTGGATAATTGTTAT+TGG | + | chr3.1:33865394-33865413 | MS.gene69561:intron | 25.0% |
! | TGTGTCAAATTGTAAAATGT+AGG | - | chr3.1:33865922-33865941 | None:intergenic | 25.0% |
! | TTGTTTAGTGATTCTTGATT+AGG | + | chr3.1:33866120-33866139 | MS.gene69561:intron | 25.0% |
!! | GGAATTGGATAATTGTTATT+GGG | + | chr3.1:33865395-33865414 | MS.gene69561:intron | 25.0% |
!! | GTAATATTTAAAACCTTGGA+TGG | - | chr3.1:33863809-33863828 | None:intergenic | 25.0% |
!!! | TAATCGAGTAGTGTTTTATT+GGG | + | chr3.1:33863926-33863945 | MS.gene69561:intron | 25.0% |
!!! | TCATGTATACGGAATTTTTT+GGG | + | chr3.1:33864386-33864405 | MS.gene69561:intron | 25.0% |
AAAAAAAATACTTGGCGCAA+TGG | + | chr3.1:33864520-33864539 | MS.gene69561:intron | 30.0% | |
AAAATGAAAGGCAGATAAGT+AGG | - | chr3.1:33864955-33864974 | None:intergenic | 30.0% | |
AACCACAAACTACAATATCT+TGG | + | chr3.1:33865153-33865172 | MS.gene69561:intron | 30.0% | |
AACCTAAATTGTCCTTCAAA+CGG | + | chr3.1:33863707-33863726 | MS.gene69561:CDS | 30.0% | |
ACAAATCTACTCATGTTGAA+AGG | + | chr3.1:33865060-33865079 | MS.gene69561:CDS | 30.0% | |
ACTAACTTTGTCTGTATCAA+CGG | - | chr3.1:33865112-33865131 | None:intergenic | 30.0% | |
ATCAATGATTGCATCAACTA+GGG | - | chr3.1:33865598-33865617 | None:intergenic | 30.0% | |
ATCCTATAGAATTCCTTAAG+AGG | + | chr3.1:33863903-33863922 | MS.gene69561:intron | 30.0% | |
ATTACTAATGTCTTCAAGCT+AGG | - | chr3.1:33865303-33865322 | None:intergenic | 30.0% | |
CAAAAAATTCCGTATACATG+AGG | - | chr3.1:33864387-33864406 | None:intergenic | 30.0% | |
CATCATCTTGTGTAAAAAGT+AGG | + | chr3.1:33864592-33864611 | MS.gene69561:intron | 30.0% | |
CTTGTGTAAAAAGTAGGATA+AGG | + | chr3.1:33864598-33864617 | MS.gene69561:intron | 30.0% | |
TACCTCTTAAGGAATTCTAT+AGG | - | chr3.1:33863908-33863927 | None:intergenic | 30.0% | |
TACGTGTTTCGTATAATTGT+TGG | + | chr3.1:33865804-33865823 | MS.gene69561:intron | 30.0% | |
TGATTAGGTACTTAACTACT+TGG | + | chr3.1:33866135-33866154 | MS.gene69561:intron | 30.0% | |
TGTTCAATTGAGCTATTGAA+GGG | + | chr3.1:33865660-33865679 | MS.gene69561:CDS | 30.0% | |
TTACTAATGTCTTCAAGCTA+GGG | - | chr3.1:33865302-33865321 | None:intergenic | 30.0% | |
TTGAAAATTGAACCGTTTGA+AGG | - | chr3.1:33863722-33863741 | None:intergenic | 30.0% | |
TTGATGCAATCATTGATCTT+GGG | + | chr3.1:33865601-33865620 | MS.gene69561:CDS | 30.0% | |
TTTCCACTTCTTTGCTAATA+TGG | - | chr3.1:33864922-33864941 | None:intergenic | 30.0% | |
! | GTAATCGAGTAGTGTTTTAT+TGG | + | chr3.1:33863925-33863944 | MS.gene69561:intron | 30.0% |
! | TCATTGTTTTCCTTGAAACA+TGG | - | chr3.1:33866080-33866099 | None:intergenic | 30.0% |
! | TTCAAACGGTTCAATTTTCA+AGG | + | chr3.1:33863721-33863740 | MS.gene69561:CDS | 30.0% |
!! | AATCGAGTAGTGTTTTATTG+GGG | + | chr3.1:33863927-33863946 | MS.gene69561:intron | 30.0% |
!! | CAATGGATTACATAAAATGC+CGG | + | chr3.1:33863853-33863872 | MS.gene69561:intron | 30.0% |
!!! | CTCATGTATACGGAATTTTT+TGG | + | chr3.1:33864385-33864404 | MS.gene69561:intron | 30.0% |
!!! | CTGCTATTCTGGTTTTTTTT+GGG | + | chr3.1:33864297-33864316 | MS.gene69561:intron | 30.0% |
!!! | TGGTTTTTTTTGGGCTTTTT+TGG | + | chr3.1:33864306-33864325 | MS.gene69561:intron | 30.0% |
!!! | TTGCCTTGTTTTTCTGATTT+TGG | - | chr3.1:33865007-33865026 | None:intergenic | 30.0% |
!!! | TTTTAGGTTCCTCATGTATA+CGG | + | chr3.1:33864375-33864394 | MS.gene69561:intron | 30.0% |
!!! | TTTTTTGGGTAATCCTTTTG+TGG | + | chr3.1:33864400-33864419 | MS.gene69561:intron | 30.0% |
AAATTGTGATGTTCCTGAAC+CGG | + | chr3.1:33863747-33863766 | MS.gene69561:CDS | 35.0% | |
AACCGTTTGAAGGACAATTT+AGG | - | chr3.1:33863712-33863731 | None:intergenic | 35.0% | |
AATGTAAAACATACCACTCC+GGG | - | chr3.1:33866036-33866055 | None:intergenic | 35.0% | |
AATTCCAACTCTTGTAAGAC+AGG | - | chr3.1:33865381-33865400 | None:intergenic | 35.0% | |
AATTGCCTCTTAGATCTAGT+TGG | + | chr3.1:33865026-33865045 | MS.gene69561:CDS | 35.0% | |
AATTTAGTGTGAAGTCTTGG+CGG | + | chr3.1:33864256-33864275 | MS.gene69561:intron | 35.0% | |
ACCACACATAAGAAAACTGA+TGG | - | chr3.1:33865469-33865488 | None:intergenic | 35.0% | |
AGCAATTTAGTGTGAAGTCT+TGG | + | chr3.1:33864253-33864272 | MS.gene69561:intron | 35.0% | |
ATGATTAGTGACTTACCTGA+GGG | + | chr3.1:33864843-33864862 | MS.gene69561:CDS | 35.0% | |
ATTCCAACTCTTGTAAGACA+GGG | - | chr3.1:33865380-33865399 | None:intergenic | 35.0% | |
ATTTGACACATCTCTATGTG+TGG | + | chr3.1:33865932-33865951 | MS.gene69561:CDS | 35.0% | |
CACTCATAAAACAAACAGAC+CGG | - | chr3.1:33863875-33863894 | None:intergenic | 35.0% | |
CCTCCAAAATCAGAAAAACA+AGG | + | chr3.1:33865001-33865020 | MS.gene69561:CDS | 35.0% | |
CTTCCATATTAGCAAAGAAG+TGG | + | chr3.1:33864916-33864935 | MS.gene69561:CDS | 35.0% | |
CTTGAAACATGGCAAATACA+AGG | - | chr3.1:33866069-33866088 | None:intergenic | 35.0% | |
CTTGTATTTGCCATGTTTCA+AGG | + | chr3.1:33866067-33866086 | MS.gene69561:intron | 35.0% | |
GAACGTTAGTGCATTTGTAA+TGG | + | chr3.1:33865969-33865988 | MS.gene69561:CDS | 35.0% | |
GAATGTAAAACATACCACTC+CGG | - | chr3.1:33866037-33866056 | None:intergenic | 35.0% | |
GATCAATGATTGCATCAACT+AGG | - | chr3.1:33865599-33865618 | None:intergenic | 35.0% | |
GGAAAGGAGAAGAAAGAAAA+GGG | + | chr3.1:33863669-33863688 | MS.gene69561:CDS | 35.0% | |
GTGTTCAATTGAGCTATTGA+AGG | + | chr3.1:33865659-33865678 | MS.gene69561:CDS | 35.0% | |
GTTGATGCAATCATTGATCT+TGG | + | chr3.1:33865600-33865619 | MS.gene69561:CDS | 35.0% | |
TAAGATCCAACGACATAATG+TGG | + | chr3.1:33864806-33864825 | MS.gene69561:CDS | 35.0% | |
TACCTTTGCAAATGAGAACT+CGG | + | chr3.1:33865332-33865351 | MS.gene69561:CDS | 35.0% | |
TATGATTAGTGACTTACCTG+AGG | + | chr3.1:33864842-33864861 | MS.gene69561:CDS | 35.0% | |
TCTTCGAAAGACTCCTAAAT+TGG | + | chr3.1:33865996-33866015 | MS.gene69561:CDS | 35.0% | |
TGGAAAGGAGAAGAAAGAAA+AGG | + | chr3.1:33863668-33863687 | MS.gene69561:CDS | 35.0% | |
TGTAAAATGTAGGAAGAGGA+AGG | - | chr3.1:33865912-33865931 | None:intergenic | 35.0% | |
TGTCTTACAAGAGTTGGAAT+TGG | + | chr3.1:33865380-33865399 | MS.gene69561:CDS | 35.0% | |
TTGGAAGATCTTACAATTCC+CGG | + | chr3.1:33866015-33866034 | MS.gene69561:CDS | 35.0% | |
! | ACCATCAGTTTTCTTATGTG+TGG | + | chr3.1:33865465-33865484 | MS.gene69561:intron | 35.0% |
! | AGAGAAGATTTGAAACAGCA+CGG | - | chr3.1:33866190-33866209 | None:intergenic | 35.0% |
! | GATGCAGAGTATCCAATATA+TGG | - | chr3.1:33865888-33865907 | None:intergenic | 35.0% |
! | GTTCAGGAACATCACAATTT+TGG | - | chr3.1:33863747-33863766 | None:intergenic | 35.0% |
! | GTTTTCGGTTGGATTGTTTA+GGG | + | chr3.1:33864343-33864362 | MS.gene69561:intron | 35.0% |
! | TTCTTGCAGCATCTTTTGTA+GGG | - | chr3.1:33864896-33864915 | None:intergenic | 35.0% |
!! | ATCGAGTAGTGTTTTATTGG+GGG | + | chr3.1:33863928-33863947 | MS.gene69561:intron | 35.0% |
!! | TATTTTTGATCAGGTAGCAC+AGG | + | chr3.1:33864749-33864768 | MS.gene69561:intron | 35.0% |
!!! | CCTTGTTTTTCTGATTTTGG+AGG | - | chr3.1:33865004-33865023 | None:intergenic | 35.0% |
!!! | GCTGCTATTCTGGTTTTTTT+TGG | + | chr3.1:33864296-33864315 | MS.gene69561:intron | 35.0% |
!!! | TCTGTTTGTTTTATGAGTGG+AGG | + | chr3.1:33863876-33863895 | MS.gene69561:intron | 35.0% |
AACATGGCAAATACAAGGAC+TGG | - | chr3.1:33866064-33866083 | None:intergenic | 40.0% | |
AATCACTCCTCTTTCAACCT+TGG | + | chr3.1:33864450-33864469 | MS.gene69561:intron | 40.0% | |
AATGATTGCATCAACTAGGG+AGG | - | chr3.1:33865595-33865614 | None:intergenic | 40.0% | |
ACAAAGATGCCGTATACATG+CGG | - | chr3.1:33864430-33864449 | None:intergenic | 40.0% | |
AGTAGCTGTGTTATGTGTGT+TGG | + | chr3.1:33864124-33864143 | MS.gene69561:CDS | 40.0% | |
ATTGAACACTGAGCAGCATA+TGG | - | chr3.1:33865648-33865667 | None:intergenic | 40.0% | |
ATTGAGCTATTGAAGGGACT+TGG | + | chr3.1:33865666-33865685 | MS.gene69561:CDS | 40.0% | |
CAAAGAAGTGGAAACACTTG+TGG | + | chr3.1:33864928-33864947 | MS.gene69561:CDS | 40.0% | |
CAAGAAACCAAGGTTGAAAG+AGG | - | chr3.1:33864460-33864479 | None:intergenic | 40.0% | |
CACTACTCGATTACCTCTTA+AGG | - | chr3.1:33863919-33863938 | None:intergenic | 40.0% | |
CAGAATAGCAGCAGAACAAA+TGG | - | chr3.1:33864288-33864307 | None:intergenic | 40.0% | |
CATTTCGATCACCTAGTGAA+AGG | - | chr3.1:33865179-33865198 | None:intergenic | 40.0% | |
CATTTGTTCTGCTGCTATTC+TGG | + | chr3.1:33864286-33864305 | MS.gene69561:intron | 40.0% | |
CTACTCATGTTGAAAGGCTT+TGG | + | chr3.1:33865066-33865085 | MS.gene69561:CDS | 40.0% | |
CTAGGGAAACAAATACCACT+AGG | - | chr3.1:33865285-33865304 | None:intergenic | 40.0% | |
CTTGTGTGTCTTACATAAGC+CGG | + | chr3.1:33864476-33864495 | MS.gene69561:intron | 40.0% | |
GAACAATACACCACAATGGT+GGG | + | chr3.1:33864625-33864644 | MS.gene69561:intron | 40.0% | |
GATGGTCAACTTCCTTAATG+TGG | - | chr3.1:33865451-33865470 | None:intergenic | 40.0% | |
GGCCAAGATATTGTAGTTTG+TGG | - | chr3.1:33865158-33865177 | None:intergenic | 40.0% | |
GTAAGACACACAAGAAACCA+AGG | - | chr3.1:33864470-33864489 | None:intergenic | 40.0% | |
GTCTTCCAACTAGATCTAAG+AGG | - | chr3.1:33865034-33865053 | None:intergenic | 40.0% | |
TCGTTGGATCTTATGCACAT+CGG | - | chr3.1:33864799-33864818 | None:intergenic | 40.0% | |
TCTATACATACTTGGCGCAA+TGG | + | chr3.1:33863836-33863855 | MS.gene69561:intron | 40.0% | |
TGTCATCCACATTATGTCGT+TGG | - | chr3.1:33864815-33864834 | None:intergenic | 40.0% | |
TTCACTCTACACATTCCTAG+TGG | + | chr3.1:33865267-33865286 | MS.gene69561:CDS | 40.0% | |
TTGTGTGTCTTACATAAGCC+GGG | + | chr3.1:33864477-33864496 | MS.gene69561:intron | 40.0% | |
! | CAATATCTTGGCCTTTCACT+AGG | + | chr3.1:33865165-33865184 | MS.gene69561:intron | 40.0% |
! | GGTTTTCGGTTGGATTGTTT+AGG | + | chr3.1:33864342-33864361 | MS.gene69561:intron | 40.0% |
! | GTTCTTGCAGCATCTTTTGT+AGG | - | chr3.1:33864897-33864916 | None:intergenic | 40.0% |
!! | TCAGCAACTGTTTTGTTAGC+AGG | + | chr3.1:33864029-33864048 | MS.gene69561:intron | 40.0% |
!! | TCGAGTAGTGTTTTATTGGG+GGG | + | chr3.1:33863929-33863948 | MS.gene69561:intron | 40.0% |
!!! | CGGTCTGTTTGTTTTATGAG+TGG | + | chr3.1:33863873-33863892 | MS.gene69561:intron | 40.0% |
!!! | GTTTGTTTTATGAGTGGAGG+TGG | + | chr3.1:33863879-33863898 | MS.gene69561:intron | 40.0% |
!!! | TCTGTTTTTGCTGGTTTAGC+CGG | + | chr3.1:33864185-33864204 | MS.gene69561:intron | 40.0% |
!!! | TGTTAGCAGGTCCGTTTTTT+TGG | + | chr3.1:33864042-33864061 | MS.gene69561:intron | 40.0% |
!!! | TTTAGGGACGGTTGGTTTTT+AGG | + | chr3.1:33864359-33864378 | MS.gene69561:intron | 40.0% |
ACCCGAGCTAGCCAAAAAAA+CGG | - | chr3.1:33864056-33864075 | None:intergenic | 45.0% | |
AGATCTTACAATTCCCGGAG+TGG | + | chr3.1:33866020-33866039 | MS.gene69561:CDS | 45.0% | |
AGCCGAGTTCTCATTTGCAA+AGG | - | chr3.1:33865337-33865356 | None:intergenic | 45.0% | |
ATACGAAGAAGAACTCCCTC+AGG | - | chr3.1:33864861-33864880 | None:intergenic | 45.0% | |
CGAACAATACACCACAATGG+TGG | + | chr3.1:33864624-33864643 | MS.gene69561:intron | 45.0% | |
CTGCGAACAATACACCACAA+TGG | + | chr3.1:33864621-33864640 | MS.gene69561:intron | 45.0% | |
GCAATCATTGATCTTGGGTG+CGG | + | chr3.1:33865606-33865625 | MS.gene69561:CDS | 45.0% | |
GCAGCATATGGTTCATCATG+TGG | - | chr3.1:33865636-33865655 | None:intergenic | 45.0% | |
GTTGTTGTCACGTGACTGAA+AGG | + | chr3.1:33864547-33864566 | MS.gene69561:intron | 45.0% | |
TACATGCGGAACACCACAAA+AGG | - | chr3.1:33864416-33864435 | None:intergenic | 45.0% | |
TACTGACAGCAGCATACTCA+CGG | - | chr3.1:33864108-33864127 | None:intergenic | 45.0% | |
TCCAACCGAAAACCAAGTTC+CGG | - | chr3.1:33864336-33864355 | None:intergenic | 45.0% | |
TCGAAAGCAGCGAAACTATG+TGG | - | chr3.1:33865216-33865235 | None:intergenic | 45.0% | |
TCGGTTGGATTGTTTAGGGA+CGG | + | chr3.1:33864347-33864366 | MS.gene69561:intron | 45.0% | |
TGGATTCACATTCCCATCCA+AGG | + | chr3.1:33863793-33863812 | MS.gene69561:intron | 45.0% | |
TGTGGTGTTCCGCATGTATA+CGG | + | chr3.1:33864418-33864437 | MS.gene69561:intron | 45.0% | |
TTGGATTGTTTAGGGACGGT+TGG | + | chr3.1:33864351-33864370 | MS.gene69561:intron | 45.0% | |
! | CGGCTCAACAACTTTTCTCT+GGG | + | chr3.1:33865352-33865371 | MS.gene69561:CDS | 45.0% |
! | TCGGCTCAACAACTTTTCTC+TGG | + | chr3.1:33865351-33865370 | MS.gene69561:CDS | 45.0% |
! | TTTTCTATCGGCCTTGGTTG+AGG | + | chr3.1:33864220-33864239 | MS.gene69561:intron | 45.0% |
!! | AGTAGTGTTTTATTGGGGGG+GGG | + | chr3.1:33863932-33863951 | MS.gene69561:intron | 45.0% |
!! | CGAGTAGTGTTTTATTGGGG+GGG | + | chr3.1:33863930-33863949 | MS.gene69561:intron | 45.0% |
!! | GAGTAGTGTTTTATTGGGGG+GGG | + | chr3.1:33863931-33863950 | MS.gene69561:intron | 45.0% |
!! | TGCACATCGGTTGATGAGAT+TGG | - | chr3.1:33864786-33864805 | None:intergenic | 45.0% |
!!! | CAGCTGCTGGTTTTGTTGTT+CGG | + | chr3.1:33864158-33864177 | MS.gene69561:CDS | 45.0% |
!!! | GTCCGTTTTTTTGGCTAGCT+CGG | + | chr3.1:33864051-33864070 | MS.gene69561:CDS | 45.0% |
!!! | TCCGTTTTTTTGGCTAGCTC+GGG | + | chr3.1:33864052-33864071 | MS.gene69561:CDS | 45.0% |
!!! | TGCTGGTTTTGTTGTTCGGA+CGG | + | chr3.1:33864162-33864181 | MS.gene69561:CDS | 45.0% |
!!! | TGGTTTTGGCAGTTTTGGTG+CGG | + | chr3.1:33864075-33864094 | MS.gene69561:CDS | 45.0% |
!!! | TTTGGGCTTTTTTGGTGCTC+CGG | + | chr3.1:33864314-33864333 | MS.gene69561:intron | 45.0% |
!!! | TTTTTTGGTGCTCCGGAACT+TGG | + | chr3.1:33864321-33864340 | MS.gene69561:intron | 45.0% |
AATGCACCAAAGCAGGTCTG+GGG | - | chr3.1:33864657-33864676 | None:intergenic | 50.0% | |
ACACGAACTGGAAGTGAGCT+TGG | + | chr3.1:33863773-33863792 | MS.gene69561:intron | 50.0% | |
ACTAGGGAGGTCAGGTTAAC+AGG | - | chr3.1:33865582-33865601 | None:intergenic | 50.0% | |
CAATGCACCAAAGCAGGTCT+GGG | - | chr3.1:33864658-33864677 | None:intergenic | 50.0% | |
CTAGGGAGGTCAGGTTAACA+GGG | - | chr3.1:33865581-33865600 | None:intergenic | 50.0% | |
GTGCCCTGTCTTACAAGAGT+TGG | + | chr3.1:33865374-33865393 | MS.gene69561:CDS | 50.0% | |
TCACCCAATGACCTCAACCA+AGG | - | chr3.1:33864234-33864253 | None:intergenic | 50.0% | |
TGATCAGGTAGCACAGGTCA+TGG | + | chr3.1:33864755-33864774 | MS.gene69561:intron | 50.0% | |
TTGCATCAACTAGGGAGGTC+AGG | - | chr3.1:33865590-33865609 | None:intergenic | 50.0% | |
! | CAGACCTGCTTTGGTGCATT+GGG | + | chr3.1:33864657-33864676 | MS.gene69561:intron | 50.0% |
! | CGTGGTGGCAGGTTTTCTAT+CGG | + | chr3.1:33864208-33864227 | MS.gene69561:intron | 50.0% |
!! | GTAGTGTTTTATTGGGGGGG+GGG | + | chr3.1:33863933-33863952 | MS.gene69561:intron | 50.0% |
!! | GTGCTCCGGAACTTGGTTTT+CGG | + | chr3.1:33864328-33864347 | MS.gene69561:intron | 50.0% |
!! | TAGTGTTTTATTGGGGGGGG+GGG | + | chr3.1:33863934-33863953 | MS.gene69561:intron | 50.0% |
!! | TCCGGAACTTGGTTTTCGGT+TGG | + | chr3.1:33864332-33864351 | MS.gene69561:intron | 50.0% |
!!! | GTGTCGTGGCTGTTTTGGTT+CGG | + | chr3.1:33863982-33864001 | MS.gene69561:intron | 50.0% |
!!! | GTTTTTTTGGCTAGCTCGGG+TGG | + | chr3.1:33864055-33864074 | MS.gene69561:CDS | 50.0% |
!!! | TCGGGTGGTTTTGGCAGTTT+TGG | + | chr3.1:33864070-33864089 | MS.gene69561:CDS | 50.0% |
!!! | TTCGGACGGTCTGTTTTTGC+TGG | + | chr3.1:33864176-33864195 | MS.gene69561:intron | 50.0% |
ACCAAAGCAGGTCTGGGGAA+GGG | - | chr3.1:33864652-33864671 | None:intergenic | 55.0% | |
CACTTCCAGTTCGTGTGCTC+CGG | - | chr3.1:33863769-33863788 | None:intergenic | 55.0% | |
CCAATGCACCAAAGCAGGTC+TGG | - | chr3.1:33864659-33864678 | None:intergenic | 55.0% | |
CGGCCTTGGTTGAGGTCATT+GGG | + | chr3.1:33864228-33864247 | MS.gene69561:intron | 55.0% | |
TAGAAAACCTGCCACCACGC+CGG | - | chr3.1:33864207-33864226 | None:intergenic | 55.0% | |
TCGGCCTTGGTTGAGGTCAT+TGG | + | chr3.1:33864227-33864246 | MS.gene69561:intron | 55.0% | |
! | CCAGACCTGCTTTGGTGCAT+TGG | + | chr3.1:33864656-33864675 | MS.gene69561:intron | 55.0% |
! | GGCAGGTTTTCTATCGGCCT+TGG | + | chr3.1:33864214-33864233 | MS.gene69561:intron | 55.0% |
!! | AGTGTTTTATTGGGGGGGGG+GGG | + | chr3.1:33863935-33863954 | MS.gene69561:intron | 55.0% |
!! | TTGGCTAGCTCGGGTGGTTT+TGG | + | chr3.1:33864061-33864080 | MS.gene69561:CDS | 55.0% |
!!! | TTTTGCTGGTTTAGCCGGCG+TGG | + | chr3.1:33864190-33864209 | MS.gene69561:intron | 55.0% |
ACCCTTCCCCAGACCTGCTT+TGG | + | chr3.1:33864648-33864667 | MS.gene69561:intron | 60.0% | |
CACCAAAGCAGGTCTGGGGA+AGG | - | chr3.1:33864653-33864672 | None:intergenic | 60.0% | |
CAGGTAGCACAGGTCATGGC+TGG | + | chr3.1:33864759-33864778 | MS.gene69561:intron | 60.0% | |
CAGTTCGTGTGCTCCGGTTC+AGG | - | chr3.1:33863763-33863782 | None:intergenic | 60.0% | |
CTGAACCGGAGCACACGAAC+TGG | + | chr3.1:33863761-33863780 | MS.gene69561:CDS | 60.0% | |
GCAGCCCAATGCACCAAAGC+AGG | - | chr3.1:33864664-33864683 | None:intergenic | 60.0% | |
GGTATGCTGCTGTCAGCTGC+TGG | + | chr3.1:33864145-33864164 | MS.gene69561:CDS | 60.0% | |
!! | GTGTTTTATTGGGGGGGGGG+GGG | + | chr3.1:33863936-33863955 | MS.gene69561:intron | 60.0% |
!! | TGTTTTATTGGGGGGGGGGG+GGG | + | chr3.1:33863937-33863956 | MS.gene69561:intron | 60.0% |
GGGGAAGGGTCCCACCATTG+TGG | - | chr3.1:33864638-33864657 | None:intergenic | 65.0% | |
! | TTTTATTGGGGGGGGGGGGG+GGG | + | chr3.1:33863939-33863958 | MS.gene69561:intron | 65.0% |
!! | GTTTTATTGGGGGGGGGGGG+GGG | + | chr3.1:33863938-33863957 | MS.gene69561:intron | 65.0% |
!! | TGCTGGTTTAGCCGGCGTGG+TGG | + | chr3.1:33864193-33864212 | MS.gene69561:intron | 65.0% |
!!! | GGGGGGTGTCGTGGCTGTTT+TGG | + | chr3.1:33863977-33863996 | MS.gene69561:intron | 65.0% |
GGTTTAGCCGGCGTGGTGGC+AGG | + | chr3.1:33864197-33864216 | MS.gene69561:intron | 70.0% | |
TTTATTGGGGGGGGGGGGGG+GGG | + | chr3.1:33863940-33863959 | MS.gene69561:intron | 70.0% | |
TTATTGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863941-33863960 | MS.gene69561:intron | 75.0% | |
! | TATTGGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863942-33863961 | MS.gene69561:intron | 80.0% |
! | ATTGGGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863943-33863962 | MS.gene69561:intron | 85.0% |
! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863944-33863963 | MS.gene69561:intron | 90.0% |
!!! | GGGGGGGGGGGGGGGTGTCG+TGG | + | chr3.1:33863968-33863987 | MS.gene69561:intron | 90.0% |
! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr3.1:33863945-33863964 | MS.gene69561:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 33863667 | 33866288 | 33863667 | ID=MS.gene69561 |
chr3.1 | mRNA | 33863667 | 33866288 | 33863667 | ID=MS.gene69561.t1;Parent=MS.gene69561 |
chr3.1 | exon | 33863667 | 33863785 | 33863667 | ID=MS.gene69561.t1.exon1;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33863667 | 33863785 | 33863667 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33864051 | 33864183 | 33864051 | ID=MS.gene69561.t1.exon2;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33864051 | 33864183 | 33864051 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33864762 | 33865089 | 33864762 | ID=MS.gene69561.t1.exon3;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33864762 | 33865089 | 33864762 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33865187 | 33865408 | 33865187 | ID=MS.gene69561.t1.exon4;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33865187 | 33865408 | 33865187 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33865493 | 33865728 | 33865493 | ID=MS.gene69561.t1.exon5;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33865493 | 33865728 | 33865493 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33865877 | 33866041 | 33865877 | ID=MS.gene69561.t1.exon6;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33865877 | 33866041 | 33865877 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
chr3.1 | exon | 33866142 | 33866288 | 33866142 | ID=MS.gene69561.t1.exon7;Parent=MS.gene69561.t1 |
chr3.1 | CDS | 33866142 | 33866288 | 33866142 | ID=cds.MS.gene69561.t1;Parent=MS.gene69561.t1 |
Gene Sequence |
Protein sequence |