Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96120.t1 | XP_013456713.1 | 92.9 | 240 | 16 | 1 | 1 | 240 | 137 | 375 | 1.10E-124 | 456.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96120.t1 | Q9SCQ5 | 32.8 | 229 | 121 | 10 | 17 | 237 | 124 | 327 | 1.1e-10 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96120.t1 | A0A072ULT5 | 92.9 | 240 | 16 | 1 | 1 | 240 | 137 | 375 | 7.7e-125 | 456.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96120.t1 | MTR_4g080787 | 71.910 | 356 | 63 | 4 | 1 | 320 | 137 | 491 | 2.24e-173 | 490 |
| MS.gene96120.t1 | MTR_4g080773 | 75.104 | 241 | 56 | 2 | 1 | 238 | 137 | 376 | 5.55e-118 | 349 |
| MS.gene96120.t1 | MTR_4g080773 | 75.104 | 241 | 56 | 2 | 1 | 238 | 137 | 376 | 6.00e-118 | 349 |
| MS.gene96120.t1 | MTR_3g048290 | 62.348 | 247 | 85 | 3 | 1 | 240 | 131 | 376 | 1.22e-86 | 268 |
| MS.gene96120.t1 | MTR_4g080807 | 57.613 | 243 | 65 | 3 | 1 | 240 | 36 | 243 | 2.21e-80 | 250 |
| MS.gene96120.t1 | MTR_7g039630 | 49.569 | 232 | 110 | 4 | 15 | 240 | 111 | 341 | 5.71e-59 | 193 |
| MS.gene96120.t1 | MTR_4g080590 | 49.160 | 238 | 112 | 4 | 4 | 237 | 128 | 360 | 9.02e-59 | 193 |
| MS.gene96120.t1 | MTR_4g080590 | 49.160 | 238 | 112 | 4 | 4 | 237 | 128 | 360 | 7.13e-58 | 193 |
| MS.gene96120.t1 | MTR_7g023310 | 50.195 | 257 | 119 | 3 | 4 | 254 | 131 | 384 | 2.28e-54 | 184 |
| MS.gene96120.t1 | MTR_5g039950 | 47.845 | 232 | 86 | 6 | 15 | 240 | 129 | 331 | 6.14e-50 | 171 |
| MS.gene96120.t1 | MTR_5g039970 | 54.054 | 185 | 79 | 3 | 14 | 192 | 138 | 322 | 1.40e-47 | 163 |
| MS.gene96120.t1 | MTR_4g081030 | 44.672 | 244 | 126 | 4 | 1 | 237 | 114 | 355 | 5.32e-46 | 160 |
| MS.gene96120.t1 | MTR_4g130200 | 42.975 | 242 | 97 | 4 | 4 | 239 | 96 | 302 | 8.47e-45 | 157 |
| MS.gene96120.t1 | MTR_2g094750 | 45.238 | 252 | 122 | 8 | 1 | 238 | 211 | 460 | 1.60e-42 | 153 |
| MS.gene96120.t1 | MTR_7g023330 | 51.462 | 171 | 74 | 3 | 71 | 235 | 137 | 304 | 2.20e-37 | 137 |
| MS.gene96120.t1 | MTR_2g094450 | 39.130 | 207 | 91 | 9 | 48 | 239 | 3 | 189 | 6.04e-20 | 86.7 |
| MS.gene96120.t1 | MTR_1g082260 | 44.706 | 85 | 47 | 0 | 14 | 98 | 91 | 175 | 3.52e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96120.t1 | AT4G14096 | 31.034 | 232 | 138 | 10 | 14 | 235 | 126 | 345 | 6.56e-15 | 75.5 |
| MS.gene96120.t1 | AT4G14096 | 31.034 | 232 | 138 | 10 | 14 | 235 | 126 | 345 | 6.56e-15 | 75.5 |
| MS.gene96120.t1 | AT3G60040 | 30.932 | 236 | 149 | 10 | 4 | 235 | 136 | 361 | 1.66e-14 | 74.7 |
| MS.gene96120.t1 | AT3G60040 | 30.932 | 236 | 149 | 10 | 4 | 235 | 356 | 581 | 1.82e-14 | 74.7 |
| MS.gene96120.t1 | AT1G66290 | 31.780 | 236 | 141 | 7 | 25 | 246 | 151 | 380 | 2.12e-14 | 73.9 |
| MS.gene96120.t1 | AT4G14103 | 29.961 | 257 | 146 | 14 | 14 | 250 | 126 | 368 | 2.22e-14 | 73.6 |
| MS.gene96120.t1 | AT4G14103 | 29.961 | 257 | 146 | 14 | 14 | 250 | 126 | 368 | 2.22e-14 | 73.6 |
| MS.gene96120.t1 | AT3G60040 | 30.932 | 236 | 149 | 10 | 4 | 235 | 355 | 580 | 2.31e-14 | 74.3 |
| MS.gene96120.t1 | AT4G14103 | 30.000 | 240 | 137 | 11 | 14 | 235 | 126 | 352 | 3.02e-14 | 73.6 |
| MS.gene96120.t1 | AT3G60040 | 30.932 | 236 | 149 | 10 | 4 | 235 | 353 | 578 | 3.29e-14 | 73.6 |
| MS.gene96120.t1 | AT3G60040 | 30.932 | 236 | 149 | 10 | 4 | 235 | 355 | 580 | 3.42e-14 | 73.6 |
| MS.gene96120.t1 | AT3G59200 | 29.730 | 222 | 120 | 8 | 43 | 240 | 157 | 366 | 3.43e-14 | 73.6 |
| MS.gene96120.t1 | AT4G22280 | 32.569 | 218 | 130 | 9 | 25 | 237 | 125 | 330 | 5.56e-14 | 72.0 |
| MS.gene96120.t1 | AT4G22280 | 32.569 | 218 | 130 | 9 | 25 | 237 | 125 | 330 | 7.04e-14 | 72.4 |
| MS.gene96120.t1 | AT1G58310 | 29.752 | 242 | 140 | 8 | 14 | 235 | 143 | 374 | 1.03e-13 | 72.0 |
| MS.gene96120.t1 | AT3G59200 | 29.954 | 217 | 116 | 8 | 43 | 235 | 157 | 361 | 1.05e-13 | 71.6 |
| MS.gene96120.t1 | AT5G56390 | 27.059 | 255 | 159 | 9 | 7 | 256 | 113 | 345 | 1.17e-13 | 71.6 |
| MS.gene96120.t1 | AT5G53840 | 25.000 | 240 | 172 | 3 | 1 | 240 | 117 | 348 | 1.88e-13 | 71.2 |
| MS.gene96120.t1 | AT1G78730 | 29.592 | 196 | 122 | 5 | 31 | 212 | 133 | 326 | 2.44e-13 | 70.9 |
| MS.gene96120.t1 | AT1G78750 | 30.126 | 239 | 144 | 6 | 12 | 237 | 140 | 368 | 4.71e-13 | 70.1 |
| MS.gene96120.t1 | AT1G78750 | 30.126 | 239 | 144 | 6 | 12 | 237 | 140 | 368 | 4.71e-13 | 70.1 |
| MS.gene96120.t1 | AT2G42720 | 27.511 | 229 | 127 | 8 | 26 | 235 | 136 | 344 | 6.59e-13 | 69.3 |
| MS.gene96120.t1 | AT3G59160 | 30.290 | 241 | 135 | 12 | 20 | 235 | 157 | 389 | 7.39e-13 | 69.3 |
| MS.gene96120.t1 | AT3G50710 | 32.751 | 229 | 121 | 10 | 17 | 237 | 124 | 327 | 1.06e-12 | 68.9 |
| MS.gene96120.t1 | AT1G66310 | 31.163 | 215 | 126 | 7 | 46 | 246 | 164 | 370 | 2.26e-12 | 67.8 |
| MS.gene96120.t1 | AT1G32375 | 27.490 | 251 | 160 | 9 | 12 | 260 | 117 | 347 | 2.43e-12 | 67.8 |
| MS.gene96120.t1 | AT1G32375 | 27.490 | 251 | 160 | 9 | 12 | 260 | 117 | 347 | 2.43e-12 | 67.8 |
| MS.gene96120.t1 | AT3G58960 | 29.057 | 265 | 151 | 14 | 12 | 252 | 115 | 366 | 5.57e-12 | 66.6 |
| MS.gene96120.t1 | AT3G59190 | 28.000 | 225 | 132 | 10 | 35 | 238 | 157 | 372 | 7.76e-12 | 65.9 |
| MS.gene96120.t1 | AT3G59180 | 29.719 | 249 | 148 | 10 | 4 | 235 | 85 | 323 | 1.02e-11 | 65.9 |
| MS.gene96120.t1 | AT2G29930 | 30.332 | 211 | 119 | 10 | 41 | 237 | 31 | 227 | 1.28e-11 | 65.1 |
| MS.gene96120.t1 | AT4G13965 | 24.727 | 275 | 178 | 7 | 5 | 269 | 113 | 368 | 1.48e-11 | 65.5 |
| MS.gene96120.t1 | AT3G59190 | 27.727 | 220 | 131 | 9 | 35 | 235 | 157 | 367 | 1.63e-11 | 65.5 |
| MS.gene96120.t1 | AT2G29930 | 30.332 | 211 | 119 | 10 | 41 | 237 | 151 | 347 | 2.98e-11 | 64.3 |
| MS.gene96120.t1 | AT2G29930 | 30.332 | 211 | 119 | 10 | 41 | 237 | 151 | 347 | 2.98e-11 | 64.3 |
| MS.gene96120.t1 | AT1G56610 | 26.070 | 257 | 163 | 8 | 45 | 279 | 121 | 372 | 6.31e-11 | 63.5 |
| MS.gene96120.t1 | AT3G59210 | 29.098 | 244 | 143 | 9 | 11 | 235 | 124 | 356 | 6.76e-11 | 63.5 |
| MS.gene96120.t1 | AT3G59210 | 29.098 | 244 | 143 | 9 | 11 | 235 | 124 | 356 | 6.76e-11 | 63.5 |
| MS.gene96120.t1 | AT3G59210 | 29.098 | 244 | 143 | 9 | 11 | 235 | 124 | 356 | 6.76e-11 | 63.5 |
| MS.gene96120.t1 | AT3G59210 | 29.098 | 244 | 143 | 9 | 11 | 235 | 124 | 356 | 6.76e-11 | 63.5 |
| MS.gene96120.t1 | AT3G59210 | 29.098 | 244 | 143 | 9 | 11 | 235 | 124 | 356 | 6.76e-11 | 63.5 |
| MS.gene96120.t1 | AT1G56610 | 26.070 | 257 | 163 | 8 | 45 | 279 | 160 | 411 | 7.89e-11 | 63.2 |
| MS.gene96120.t1 | AT1G56610 | 26.070 | 257 | 163 | 8 | 45 | 279 | 223 | 474 | 8.25e-11 | 63.2 |
| MS.gene96120.t1 | AT3G62440 | 27.049 | 244 | 152 | 9 | 10 | 237 | 127 | 360 | 8.82e-11 | 63.2 |
Find 58 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATCTTAATGTGTATTCT+TGG | 0.222438 | 4.2:-29151976 | MS.gene96120:CDS |
| TGTATCACATGAACATATTA+AGG | 0.248579 | 4.2:+29152371 | None:intergenic |
| CCTTCGAAAGACTCCTAAAT+TGG | 0.253380 | 4.2:-29151915 | MS.gene96120:CDS |
| ATCTCAAGAACTTCCAATTT+AGG | 0.259052 | 4.2:+29151902 | None:intergenic |
| ACTATGGAGGTCAGGTTAAC+AGG | 0.288881 | 4.2:+29152333 | None:intergenic |
| ATCAATATCTGCATCAACTA+TGG | 0.292078 | 4.2:+29152317 | None:intergenic |
| GAATCCTCTGATGATGAATT+TGG | 0.331440 | 4.2:-29149961 | MS.gene96120:CDS |
| GAATCCTCTGATGATGAATT+TGG | 0.331440 | 4.2:-29150286 | MS.gene96120:CDS |
| ACATTGCAATATCCACATTA+AGG | 0.339640 | 4.2:-29152476 | MS.gene96120:CDS |
| AAGAGTTGACTTTGTATGAT+TGG | 0.347265 | 4.2:-29152524 | MS.gene96120:CDS |
| TGACTTTGTATGATTGGTCT+TGG | 0.365610 | 4.2:-29152518 | MS.gene96120:CDS |
| GGTAACACAAACTTATCATT+TGG | 0.367428 | 4.2:+29152720 | None:intergenic |
| TACTTCATTAGTGTTGTTCT+CGG | 0.386109 | 4.2:+29151949 | None:intergenic |
| TGGAAGTTCTTGAGATTCCT+AGG | 0.389414 | 4.2:-29151895 | MS.gene96120:CDS |
| AAAGTTGTGTCATCAAGTTT+TGG | 0.397740 | 4.2:-29151532 | MS.gene96120:intron |
| TACATCTTCCAATTGGTTGC+GGG | 0.408638 | 4.2:+29151562 | None:intergenic |
| CCAAGCATACATCTTCCAAT+TGG | 0.432178 | 4.2:+29151555 | None:intergenic |
| TCATTCAATGACTCGAAAGC+TGG | 0.433465 | 4.2:+29152687 | None:intergenic |
| TATTCATTCTTACCTGCAGC+AGG | 0.452723 | 4.2:+29149817 | None:intergenic |
| GACTTTGTATGATTGGTCTT+GGG | 0.455661 | 4.2:-29152517 | MS.gene96120:CDS |
| GGATGATGCCCGCAACCAAT+TGG | 0.464319 | 4.2:-29151570 | MS.gene96120:CDS |
| CAATATCTTAAACTTTCACT+AGG | 0.471064 | 4.2:-29152747 | MS.gene96120:CDS |
| GAATATGTAGAGTGAATTTG+AGG | 0.474133 | 4.2:+29152652 | None:intergenic |
| GATGGAGAGTATCCTTTGTA+TGG | 0.479906 | 4.2:+29152023 | None:intergenic |
| CTGCATCAACTATGGAGGTC+AGG | 0.483598 | 4.2:+29152325 | None:intergenic |
| ACATTTATCAGCTGATATGC+TGG | 0.483982 | 4.2:-29151591 | MS.gene96120:CDS |
| TCTGAGGTGCTCCCTGCTGC+AGG | 0.489352 | 4.2:-29149829 | MS.gene96120:intron |
| TGAGAAGCAAATACATCATC+AGG | 0.490334 | 4.2:+29152285 | None:intergenic |
| GGATTCATCATCATAGTAGC+TGG | 0.491226 | 4.2:+29149978 | None:intergenic |
| GGATTCATCATCATAGTAGC+TGG | 0.491226 | 4.2:+29150303 | None:intergenic |
| ACTTCATTAGTGTTGTTCTC+GGG | 0.497838 | 4.2:+29151950 | None:intergenic |
| AAAGTCAACTCTTGTAAGAC+TGG | 0.499080 | 4.2:+29152534 | None:intergenic |
| TGTGTCAAATTGTCAAATGA+AGG | 0.499334 | 4.2:+29151995 | None:intergenic |
| ATACATCTTCCAATTGGTTG+CGG | 0.507493 | 4.2:+29151561 | None:intergenic |
| CCAATTGGAAGATGTATGCT+TGG | 0.508533 | 4.2:-29151555 | MS.gene96120:CDS |
| AACTGACTTCTCATTTGCAA+AGG | 0.521307 | 4.2:+29152578 | None:intergenic |
| CATTCAATGACTCGAAAGCT+GGG | 0.526527 | 4.2:+29152688 | None:intergenic |
| AAAATAAAACGTACCACCCT+AGG | 0.529364 | 4.2:+29151878 | None:intergenic |
| TGTCAAATGAAGGAAGGAGA+TGG | 0.547136 | 4.2:+29152005 | None:intergenic |
| CTATGGAGGTCAGGTTAACA+GGG | 0.548080 | 4.2:+29152334 | None:intergenic |
| CTACACAATCAAAGTCAAAA+CGG | 0.548472 | 4.2:+29152442 | None:intergenic |
| CCAATTTAGGAGTCTTTCGA+AGG | 0.549079 | 4.2:+29151915 | None:intergenic |
| GGAAGTTCTTGAGATTCCTA+GGG | 0.556966 | 4.2:-29151894 | MS.gene96120:CDS |
| TTCACCAAATTCATCATCAG+AGG | 0.572464 | 4.2:+29149957 | None:intergenic |
| TTCACCAAATTCATCATCAG+AGG | 0.572464 | 4.2:+29150282 | None:intergenic |
| TCAAATTGTCAAATGAAGGA+AGG | 0.579316 | 4.2:+29151999 | None:intergenic |
| AGTTCTTGAGATTCCTAGGG+TGG | 0.610232 | 4.2:-29151891 | MS.gene96120:intron |
| CTAGTGTCTTTACCATACAA+AGG | 0.611766 | 4.2:-29152035 | MS.gene96120:intron |
| GACGGTCAACTTCCTTAATG+TGG | 0.613042 | 4.2:+29152464 | None:intergenic |
| ACTAGCTAATGATACTCTTG+AGG | 0.617745 | 4.2:-29152214 | MS.gene96120:intron |
| TCGAAAGCTGGGAAACTATG+TGG | 0.621196 | 4.2:+29152699 | None:intergenic |
| ATTCATTCTTACCTGCAGCA+GGG | 0.641108 | 4.2:+29149818 | None:intergenic |
| AATATCTGCATCAACTATGG+AGG | 0.641408 | 4.2:+29152320 | None:intergenic |
| TTAGGGAAATGAATATCACT+AGG | 0.642175 | 4.2:+29152630 | None:intergenic |
| ACAATCAAAGTCAAAACGGA+CGG | 0.657130 | 4.2:+29152446 | None:intergenic |
| TTGTACATTCAAGATTGATG+CGG | 0.661658 | 4.2:-29152406 | MS.gene96120:CDS |
| GAAGCAAATACATCATCAGG+TGG | 0.666203 | 4.2:+29152288 | None:intergenic |
| TGTGCAGTTGAGCTACTGAG+TGG | 0.722939 | 4.2:-29152261 | MS.gene96120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGCTTTTTAAATTTTTA+TGG | - | chr4.2:29150541-29150560 | MS.gene96120:intron | 10.0% |
| !!! | AAGTGAATCAATTTTTTTAT+TGG | - | chr4.2:29150879-29150898 | MS.gene96120:intron | 15.0% |
| !!! | ATATTTTTAGTATGTAAAGT+GGG | - | chr4.2:29151601-29151620 | MS.gene96120:CDS | 15.0% |
| !!! | TATATTTTTAGTATGTAAAG+TGG | - | chr4.2:29151600-29151619 | MS.gene96120:CDS | 15.0% |
| !!! | TGTATTTGAGTTAAAATATT+TGG | - | chr4.2:29151313-29151332 | MS.gene96120:intron | 15.0% |
| !! | CATAAAAAGAATAAGCAATA+AGG | + | chr4.2:29152486-29152505 | None:intergenic | 20.0% |
| !!! | ACTAAAAACAACATTTTCAT+AGG | + | chr4.2:29150114-29150133 | None:intergenic | 20.0% |
| !!! | ACTTTTCTTTTGATTTTACT+TGG | - | chr4.2:29151751-29151770 | MS.gene96120:intron | 20.0% |
| !!! | AGTTTTACAAAATTCAAAGT+AGG | + | chr4.2:29151052-29151071 | None:intergenic | 20.0% |
| !!! | ATTGCTTATTCTTTTTATGA+AGG | - | chr4.2:29152487-29152506 | MS.gene96120:CDS | 20.0% |
| !!! | CTTTTCTTTTGATTTTACTT+GGG | - | chr4.2:29151752-29151771 | MS.gene96120:intron | 20.0% |
| !!! | TACTTTGAATTTTGTAAAAC+TGG | - | chr4.2:29151051-29151070 | MS.gene96120:intron | 20.0% |
| !!! | TTGTTTAATGGTTCTTATTT+AGG | - | chr4.2:29150444-29150463 | MS.gene96120:intron | 20.0% |
| ! | AAAACAGAAATGAAGATGAT+AGG | + | chr4.2:29150064-29150083 | None:intergenic | 25.0% |
| ! | AAAGAATAAGCAATAAGGAA+AGG | + | chr4.2:29152481-29152500 | None:intergenic | 25.0% |
| ! | AAATCTGAAGGAACTAAATT+AGG | + | chr4.2:29151657-29151676 | None:intergenic | 25.0% |
| ! | AGAAAGGAAAATAGCATAAT+AGG | + | chr4.2:29152530-29152549 | None:intergenic | 25.0% |
| ! | ATATTGATCTCCTCTAAATA+TGG | + | chr4.2:29150613-29150632 | None:intergenic | 25.0% |
| ! | CAATATCTTAAACTTTCACT+AGG | - | chr4.2:29149489-29149508 | MS.gene96120:intron | 25.0% |
| ! | CATCTCATATAGATTAAGAA+AGG | + | chr4.2:29152546-29152565 | None:intergenic | 25.0% |
| ! | TATTGATCTCCTCTAAATAT+GGG | + | chr4.2:29150612-29150631 | None:intergenic | 25.0% |
| ! | TATTTAGGTACTTAACTACT+TGG | - | chr4.2:29150459-29150478 | MS.gene96120:intron | 25.0% |
| ! | TCCTTCATATTAATAGGATT+TGG | - | chr4.2:29151563-29151582 | MS.gene96120:CDS | 25.0% |
| ! | TGTATCACATGAACATATTA+AGG | + | chr4.2:29149868-29149887 | None:intergenic | 25.0% |
| ! | TGTGTTTCCTTCATATTAAT+AGG | - | chr4.2:29151557-29151576 | MS.gene96120:CDS | 25.0% |
| ! | TTAAGATAAACGTAACGAAT+TGG | + | chr4.2:29150582-29150601 | None:intergenic | 25.0% |
| !! | AAATTGATTCACTTCACAAA+TGG | + | chr4.2:29150873-29150892 | None:intergenic | 25.0% |
| !! | ACAAGTTCAAGATTCTTTTT+GGG | + | chr4.2:29151002-29151021 | None:intergenic | 25.0% |
| !! | ATGTTTGTGTTATTATAGAG+TGG | - | chr4.2:29151847-29151866 | MS.gene96120:intron | 25.0% |
| !! | ATTGCATATTTTCTTTCTCT+CGG | - | chr4.2:29150152-29150171 | MS.gene96120:intron | 25.0% |
| !! | TAATTTAGTTCCTTCAGATT+TGG | - | chr4.2:29151656-29151675 | MS.gene96120:intron | 25.0% |
| !! | TATAACATCCCAACATTTTT+AGG | - | chr4.2:29151105-29151124 | MS.gene96120:intron | 25.0% |
| !! | TCTGCTACTTATTTAATCTT+CGG | - | chr4.2:29152719-29152738 | MS.gene96120:CDS | 25.0% |
| !! | TGTTTGTGTTATTATAGAGT+GGG | - | chr4.2:29151848-29151867 | MS.gene96120:intron | 25.0% |
| !!! | ACTGCTAATTTTTTTAGCTT+AGG | + | chr4.2:29149627-29149646 | None:intergenic | 25.0% |
| !!! | AGACTACTATGATTAGTTTA+TGG | - | chr4.2:29150841-29150860 | MS.gene96120:intron | 25.0% |
| !!! | ATTATTGTTAGTCTTGAACA+TGG | + | chr4.2:29150405-29150424 | None:intergenic | 25.0% |
| !!! | CTGCTAATTTTTTTAGCTTA+GGG | + | chr4.2:29149626-29149645 | None:intergenic | 25.0% |
| !!! | CTGTTTGTTTTTCTTTGAAT+GGG | - | chr4.2:29150741-29150760 | MS.gene96120:intron | 25.0% |
| !!! | GTATTTGTTTTCATTGTTTC+AGG | - | chr4.2:29151909-29151928 | MS.gene96120:CDS | 25.0% |
| !!! | TCTGTTTGTTTTTCTTTGAA+TGG | - | chr4.2:29150740-29150759 | MS.gene96120:intron | 25.0% |
| !!! | TTGTCAATTGACTTGTTTAA+TGG | - | chr4.2:29150432-29150451 | MS.gene96120:intron | 25.0% |
| AAAAAATGCCCCATATTTAG+AGG | - | chr4.2:29150600-29150619 | MS.gene96120:intron | 30.0% | |
| AACTATGTCATGCTTTAGTA+TGG | + | chr4.2:29150974-29150993 | None:intergenic | 30.0% | |
| ACATTGCAATATCCACATTA+AGG | - | chr4.2:29149760-29149779 | MS.gene96120:intron | 30.0% | |
| ACTTCATTGCGTAGTATAAA+AGG | - | chr4.2:29150787-29150806 | MS.gene96120:intron | 30.0% | |
| ATCAATATCTGCATCAACTA+TGG | + | chr4.2:29149922-29149941 | None:intergenic | 30.0% | |
| ATCTCAAGAACTTCCAATTT+AGG | + | chr4.2:29150337-29150356 | None:intergenic | 30.0% | |
| ATTGATCTCCTCTAAATATG+GGG | + | chr4.2:29150611-29150630 | None:intergenic | 30.0% | |
| CACATCTTAATGTGTATTCT+TGG | - | chr4.2:29150260-29150279 | MS.gene96120:intron | 30.0% | |
| CTACACAATCAAAGTCAAAA+CGG | + | chr4.2:29149797-29149816 | None:intergenic | 30.0% | |
| CTTCATTGCGTAGTATAAAA+GGG | - | chr4.2:29150788-29150807 | MS.gene96120:intron | 30.0% | |
| GAATATGTAGAGTGAATTTG+AGG | + | chr4.2:29149587-29149606 | None:intergenic | 30.0% | |
| GAGAGAAAGAAAATATGCAA+TGG | + | chr4.2:29150153-29150172 | None:intergenic | 30.0% | |
| GCCAAATCCTATTAATATGA+AGG | + | chr4.2:29151567-29151586 | None:intergenic | 30.0% | |
| GGTAACACAAACTTATCATT+TGG | + | chr4.2:29149519-29149538 | None:intergenic | 30.0% | |
| TAAAACCTCCTAGTTATTAG+TGG | - | chr4.2:29151988-29152007 | MS.gene96120:CDS | 30.0% | |
| TAAATGCACCAAGTCTTTAT+TGG | - | chr4.2:29151363-29151382 | MS.gene96120:intron | 30.0% | |
| TAGCTAATAACTTGATGTGA+AGG | - | chr4.2:29151250-29151269 | MS.gene96120:intron | 30.0% | |
| TATGGTAAAGACACTAGTAA+TGG | + | chr4.2:29150198-29150217 | None:intergenic | 30.0% | |
| TCAAATTGTCAAATGAAGGA+AGG | + | chr4.2:29150240-29150259 | None:intergenic | 30.0% | |
| TCTATATGAGATGAGATTTG+TGG | - | chr4.2:29152553-29152572 | MS.gene96120:CDS | 30.0% | |
| TGTGTCAAATTGTCAAATGA+AGG | + | chr4.2:29150244-29150263 | None:intergenic | 30.0% | |
| TTAGGGAAATGAATATCACT+AGG | + | chr4.2:29149609-29149628 | None:intergenic | 30.0% | |
| TTGTACATTCAAGATTGATG+CGG | - | chr4.2:29149830-29149849 | MS.gene96120:CDS | 30.0% | |
| ! | AAAGTTGTGTCATCAAGTTT+TGG | - | chr4.2:29150704-29150723 | MS.gene96120:intron | 30.0% |
| ! | AAGAGTTGACTTTGTATGAT+TGG | - | chr4.2:29149712-29149731 | MS.gene96120:intron | 30.0% |
| ! | CAAGTTCAAGATTCTTTTTG+GGG | + | chr4.2:29151001-29151020 | None:intergenic | 30.0% |
| ! | CTCATTTGTTGCATTATAGT+GGG | - | chr4.2:29152746-29152765 | MS.gene96120:CDS | 30.0% |
| ! | GACAAGTTCAAGATTCTTTT+TGG | + | chr4.2:29151003-29151022 | None:intergenic | 30.0% |
| ! | GTTTGTGTTATTATAGAGTG+GGG | - | chr4.2:29151849-29151868 | MS.gene96120:intron | 30.0% |
| ! | TACTTCATTAGTGTTGTTCT+CGG | + | chr4.2:29150290-29150309 | None:intergenic | 30.0% |
| !! | AAATAAGACAAAGGCATTCT+AGG | + | chr4.2:29152362-29152381 | None:intergenic | 30.0% |
| !! | GTTTTTCTTTGAATGGGTTT+GGG | - | chr4.2:29150747-29150766 | MS.gene96120:intron | 30.0% |
| !! | TGTTTTTCTTTGAATGGGTT+TGG | - | chr4.2:29150746-29150765 | MS.gene96120:intron | 30.0% |
| AAAACTTTCACTTTCCGTAC+AGG | + | chr4.2:29151222-29151241 | None:intergenic | 35.0% | |
| AAAATAAAACGTACCACCCT+AGG | + | chr4.2:29150361-29150380 | None:intergenic | 35.0% | |
| AAAGCAGTCCAATAAAGACT+TGG | + | chr4.2:29151374-29151393 | None:intergenic | 35.0% | |
| AAAGTCAACTCTTGTAAGAC+TGG | + | chr4.2:29149705-29149724 | None:intergenic | 35.0% | |
| AAGCAGCTCAGAATAATTTC+AGG | + | chr4.2:29151889-29151908 | None:intergenic | 35.0% | |
| AATATCTGCATCAACTATGG+AGG | + | chr4.2:29149919-29149938 | None:intergenic | 35.0% | |
| AATCCAACAACCAAATCTGA+AGG | + | chr4.2:29151669-29151688 | None:intergenic | 35.0% | |
| ACAATCAAAGTCAAAACGGA+CGG | + | chr4.2:29149793-29149812 | None:intergenic | 35.0% | |
| ACAGCTGAACCTAAAAATGT+TGG | + | chr4.2:29151117-29151136 | None:intergenic | 35.0% | |
| ACATTTATCAGCTGATATGC+TGG | - | chr4.2:29150645-29150664 | MS.gene96120:intron | 35.0% | |
| ACTAGCTAATGATACTCTTG+AGG | - | chr4.2:29150022-29150041 | MS.gene96120:intron | 35.0% | |
| AGAGATAGACACTTAAACGT+GGG | - | chr4.2:29151188-29151207 | MS.gene96120:intron | 35.0% | |
| AGCAGCTCAGAATAATTTCA+GGG | + | chr4.2:29151888-29151907 | None:intergenic | 35.0% | |
| AGCGAAGGAAAAGAAAGTTA+AGG | + | chr4.2:29151792-29151811 | None:intergenic | 35.0% | |
| ATACATCTTCCAATTGGTTG+CGG | + | chr4.2:29150678-29150697 | None:intergenic | 35.0% | |
| CAGCTGAACCTAAAAATGTT+GGG | + | chr4.2:29151116-29151135 | None:intergenic | 35.0% | |
| CCACTATAATGCAACAAATG+AGG | + | chr4.2:29152748-29152767 | None:intergenic | 35.0% | |
| CTAGTGTCTTTACCATACAA+AGG | - | chr4.2:29150201-29150220 | MS.gene96120:intron | 35.0% | |
| CTTGTCTTTCAAACTTCAGT+AGG | - | chr4.2:29151017-29151036 | MS.gene96120:intron | 35.0% | |
| TAAGTGCAAAATCGAAGCAT+TGG | + | chr4.2:29151160-29151179 | None:intergenic | 35.0% | |
| TCATTGTTAGGTGGAACATT+TGG | - | chr4.2:29152016-29152035 | MS.gene96120:CDS | 35.0% | |
| TGAAACAGCCACTAATAACT+AGG | + | chr4.2:29151999-29152018 | None:intergenic | 35.0% | |
| TGAGAAGCAAATACATCATC+AGG | + | chr4.2:29149954-29149973 | None:intergenic | 35.0% | |
| TTCACCAAATTCATCATCAG+AGG | + | chr4.2:29151957-29151976 | None:intergenic | 35.0% | |
| TTGAAAAACTTGACGCATCA+AGG | - | chr4.2:29152620-29152639 | MS.gene96120:CDS | 35.0% | |
| ! | AACTGACTTCTCATTTGCAA+AGG | + | chr4.2:29149661-29149680 | None:intergenic | 35.0% |
| ! | ACTTCATTAGTGTTGTTCTC+GGG | + | chr4.2:29150289-29150308 | None:intergenic | 35.0% |
| ! | AGAGAAGATTTGAAACAGCA+AGG | + | chr4.2:29150514-29150533 | None:intergenic | 35.0% |
| ! | CCTCATTTGTTGCATTATAG+TGG | - | chr4.2:29152745-29152764 | MS.gene96120:CDS | 35.0% |
| ! | GAATCCTCTGATGATGAATT+TGG | - | chr4.2:29151950-29151969 | MS.gene96120:CDS | 35.0% |
| ! | GCTTCGATTTTGCACTTAAT+TGG | - | chr4.2:29151162-29151181 | MS.gene96120:intron | 35.0% |
| ! | TTAGTGGCTGTTTCATTGTT+AGG | - | chr4.2:29152004-29152023 | MS.gene96120:CDS | 35.0% |
| !! | GACTTTGTATGATTGGTCTT+GGG | - | chr4.2:29149719-29149738 | MS.gene96120:intron | 35.0% |
| !! | TGACTTTGTATGATTGGTCT+TGG | - | chr4.2:29149718-29149737 | MS.gene96120:intron | 35.0% |
| !! | TTATTTTCGTCGCTGTTTTC+AGG | - | chr4.2:29152376-29152395 | MS.gene96120:CDS | 35.0% |
| !! | TTTGTTGTTGGGAACGTATT+GGG | - | chr4.2:29151813-29151832 | MS.gene96120:intron | 35.0% |
| !!! | CAGTTCAACGACTTTTTTCT+GGG | - | chr4.2:29149676-29149695 | MS.gene96120:intron | 35.0% |
| !!! | TCAGTTCAACGACTTTTTTC+TGG | - | chr4.2:29149675-29149694 | MS.gene96120:intron | 35.0% |
| !!! | TTCCTTCGCTTTTTGTTGTT+GGG | - | chr4.2:29151802-29151821 | MS.gene96120:intron | 35.0% |
| !!! | TTTCCTTCGCTTTTTGTTGT+TGG | - | chr4.2:29151801-29151820 | MS.gene96120:intron | 35.0% |
| !!! | TTTTGTTGTTGGGAACGTAT+TGG | - | chr4.2:29151812-29151831 | MS.gene96120:intron | 35.0% |
| AACAGCCACTAATAACTAGG+AGG | + | chr4.2:29151996-29152015 | None:intergenic | 40.0% | |
| AAGCAGCTCAGCATAATTTC+AGG | + | chr4.2:29152214-29152233 | None:intergenic | 40.0% | |
| AGCAGCTCAGCATAATTTCA+GGG | + | chr4.2:29152213-29152232 | None:intergenic | 40.0% | |
| ATGTTATAGCATGTGAGCGT+AGG | + | chr4.2:29151093-29151112 | None:intergenic | 40.0% | |
| ATTCATTCTTACCTGCAGCA+GGG | + | chr4.2:29152421-29152440 | None:intergenic | 40.0% | |
| ATTGGACAAACTCTGTTTGC+TGG | - | chr4.2:29150897-29150916 | MS.gene96120:intron | 40.0% | |
| CAGCGACGAAAATAAGACAA+AGG | + | chr4.2:29152371-29152390 | None:intergenic | 40.0% | |
| CATTCAATGACTCGAAAGCT+GGG | + | chr4.2:29149551-29149570 | None:intergenic | 40.0% | |
| CATTGCGTAGTATAAAAGGG+TGG | - | chr4.2:29150791-29150810 | MS.gene96120:intron | 40.0% | |
| CCAAGCATACATCTTCCAAT+TGG | + | chr4.2:29150684-29150703 | None:intergenic | 40.0% | |
| CCAATTGGAAGATGTATGCT+TGG | - | chr4.2:29150681-29150700 | MS.gene96120:intron | 40.0% | |
| CCAATTTAGGAGTCTTTCGA+AGG | + | chr4.2:29150324-29150343 | None:intergenic | 40.0% | |
| CCTTCGAAAGACTCCTAAAT+TGG | - | chr4.2:29150321-29150340 | MS.gene96120:intron | 40.0% | |
| GAAGCAAATACATCATCAGG+TGG | + | chr4.2:29149951-29149970 | None:intergenic | 40.0% | |
| GAGAGATAGACACTTAAACG+TGG | - | chr4.2:29151187-29151206 | MS.gene96120:intron | 40.0% | |
| GGAAGTTCTTGAGATTCCTA+GGG | - | chr4.2:29150342-29150361 | MS.gene96120:intron | 40.0% | |
| GGATTAATCTACAGCCTACA+GGG | - | chr4.2:29151684-29151703 | MS.gene96120:intron | 40.0% | |
| GGATTCATCATCATAGTAGC+TGG | + | chr4.2:29151936-29151955 | None:intergenic | 40.0% | |
| GTCTTTCAAACTTCAGTAGG+TGG | - | chr4.2:29151020-29151039 | MS.gene96120:intron | 40.0% | |
| GTTATTATAGAGTGGGGTCT+GGG | - | chr4.2:29151855-29151874 | MS.gene96120:intron | 40.0% | |
| TACATCTTCCAATTGGTTGC+GGG | + | chr4.2:29150677-29150696 | None:intergenic | 40.0% | |
| TATTCATTCTTACCTGCAGC+AGG | + | chr4.2:29152422-29152441 | None:intergenic | 40.0% | |
| TCATTCAATGACTCGAAAGC+TGG | + | chr4.2:29149552-29149571 | None:intergenic | 40.0% | |
| TGGAAGTTCTTGAGATTCCT+AGG | - | chr4.2:29150341-29150360 | MS.gene96120:intron | 40.0% | |
| TGGATTAATCTACAGCCTAC+AGG | - | chr4.2:29151683-29151702 | MS.gene96120:intron | 40.0% | |
| TGTCAAATGAAGGAAGGAGA+TGG | + | chr4.2:29150234-29150253 | None:intergenic | 40.0% | |
| TGTTATAGCATGTGAGCGTA+GGG | + | chr4.2:29151092-29151111 | None:intergenic | 40.0% | |
| TGTTATTATAGAGTGGGGTC+TGG | - | chr4.2:29151854-29151873 | MS.gene96120:intron | 40.0% | |
| TTCCCAACAACAAAAAGCGA+AGG | + | chr4.2:29151807-29151826 | None:intergenic | 40.0% | |
| TTGGACAAACTCTGTTTGCT+GGG | - | chr4.2:29150898-29150917 | MS.gene96120:intron | 40.0% | |
| ! | GGTAGTGCAAGTTGAATTAG+AGG | - | chr4.2:29151271-29151290 | MS.gene96120:intron | 40.0% |
| ! | GTTCCTTCAGATTTGGTTGT+TGG | - | chr4.2:29151663-29151682 | MS.gene96120:intron | 40.0% |
| ! | TTGTTGTTGGGAACGTATTG+GGG | - | chr4.2:29151814-29151833 | MS.gene96120:intron | 40.0% |
| !! | GATGGAGAGTATCCTTTGTA+TGG | + | chr4.2:29150216-29150235 | None:intergenic | 40.0% |
| !! | TTTTCAGGCTGCAAATTCTG+AGG | - | chr4.2:29152391-29152410 | MS.gene96120:CDS | 40.0% |
| ACTATGGAGGTCAGGTTAAC+AGG | + | chr4.2:29149906-29149925 | None:intergenic | 45.0% | |
| ACTTGTTCCAAACACCCTGT+AGG | + | chr4.2:29151701-29151720 | None:intergenic | 45.0% | |
| AGATAGCACGACTTGTCCTT+TGG | + | chr4.2:29152657-29152676 | None:intergenic | 45.0% | |
| AGTTCTTGAGATTCCTAGGG+TGG | - | chr4.2:29150345-29150364 | MS.gene96120:intron | 45.0% | |
| ATAGCACGACTTGTCCTTTG+GGG | + | chr4.2:29152655-29152674 | None:intergenic | 45.0% | |
| CTATGGAGGTCAGGTTAACA+GGG | + | chr4.2:29149905-29149924 | None:intergenic | 45.0% | |
| GACGGTCAACTTCCTTAATG+TGG | + | chr4.2:29149775-29149794 | None:intergenic | 45.0% | |
| GATAGCACGACTTGTCCTTT+GGG | + | chr4.2:29152656-29152675 | None:intergenic | 45.0% | |
| TCACTTTCCGTACAGGAACT+GGG | + | chr4.2:29151215-29151234 | None:intergenic | 45.0% | |
| TCGAAAGCTGGGAAACTATG+TGG | + | chr4.2:29149540-29149559 | None:intergenic | 45.0% | |
| TTCACTTTCCGTACAGGAAC+TGG | + | chr4.2:29151216-29151235 | None:intergenic | 45.0% | |
| TTCAGCTGTACGCTTAAGCA+TGG | - | chr4.2:29151128-29151147 | MS.gene96120:intron | 45.0% | |
| ! | GTGGCTGTTTCATTGTTAGG+TGG | - | chr4.2:29152007-29152026 | MS.gene96120:CDS | 45.0% |
| !! | TGCAAAATCGAAGCATTGGC+CGG | + | chr4.2:29151156-29151175 | None:intergenic | 45.0% |
| ATAGCATGTGAGCGTAGGGT+AGG | + | chr4.2:29151088-29151107 | None:intergenic | 50.0% | |
| CTGCATCAACTATGGAGGTC+AGG | + | chr4.2:29149914-29149933 | None:intergenic | 50.0% | |
| TAGCACGACTTGTCCTTTGG+GGG | + | chr4.2:29152654-29152673 | None:intergenic | 50.0% | |
| TAGCATGTGAGCGTAGGGTA+GGG | + | chr4.2:29151087-29151106 | None:intergenic | 50.0% | |
| TGTACGCTTAAGCATGGCTC+CGG | - | chr4.2:29151134-29151153 | MS.gene96120:intron | 50.0% | |
| TGTGCAGTTGAGCTACTGAG+TGG | - | chr4.2:29149975-29149994 | MS.gene96120:CDS | 50.0% | |
| ! | TCTACAGCCTACAGGGTGTT+TGG | - | chr4.2:29151691-29151710 | MS.gene96120:intron | 50.0% |
| ! | TGGGAACGTATTGGGGCATT+TGG | - | chr4.2:29151821-29151840 | MS.gene96120:intron | 50.0% |
| AGCACGACTTGTCCTTTGGG+GGG | + | chr4.2:29152653-29152672 | None:intergenic | 55.0% | |
| AGCATGTGAGCGTAGGGTAG+GGG | + | chr4.2:29151086-29151105 | None:intergenic | 55.0% | |
| CAAGGATGAAGACCCCCCAA+AGG | - | chr4.2:29152638-29152657 | MS.gene96120:CDS | 55.0% | |
| GGATGATGCCCGCAACCAAT+TGG | - | chr4.2:29150666-29150685 | MS.gene96120:intron | 55.0% | |
| CGTGGGTCCCAGTTCCTGTA+CGG | - | chr4.2:29151205-29151224 | MS.gene96120:intron | 60.0% | |
| TGTGAGCGTAGGGTAGGGGA+AGG | + | chr4.2:29151082-29151101 | None:intergenic | 60.0% | |
| ! | TCTGAGGTGCTCCCTGCTGC+AGG | - | chr4.2:29152407-29152426 | MS.gene96120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 29149486 | 29152772 | 29149486 | ID=MS.gene96120 |
| chr4.2 | mRNA | 29149486 | 29152772 | 29149486 | ID=MS.gene96120.t1;Parent=MS.gene96120 |
| chr4.2 | exon | 29152215 | 29152772 | 29152215 | ID=MS.gene96120.t1.exon1;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29152215 | 29152772 | 29152215 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29151892 | 29152053 | 29151892 | ID=MS.gene96120.t1.exon2;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29151892 | 29152053 | 29151892 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29151533 | 29151638 | 29151533 | ID=MS.gene96120.t1.exon3;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29151533 | 29151638 | 29151533 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29150276 | 29150327 | 29150276 | ID=MS.gene96120.t1.exon4;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29150276 | 29150327 | 29150276 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29149951 | 29150002 | 29149951 | ID=MS.gene96120.t1.exon5;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29149951 | 29150002 | 29149951 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29149830 | 29149860 | 29149830 | ID=MS.gene96120.t1.exon6;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29149830 | 29149860 | 29149830 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| chr4.2 | exon | 29149486 | 29149493 | 29149486 | ID=MS.gene96120.t1.exon7;Parent=MS.gene96120.t1 |
| chr4.2 | CDS | 29149486 | 29149493 | 29149486 | ID=cds.MS.gene96120.t1;Parent=MS.gene96120.t1 |
| Gene Sequence |
| Protein sequence |
