AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041325

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041325.t1 MTR_7g023330 42.537 402 174 8 6 358 3 396 4.80e-83 258
MS.gene041325.t1 MTR_4g080590 63.084 214 76 2 145 357 240 451 3.58e-75 239
MS.gene041325.t1 MTR_4g080590 51.095 137 63 1 1 137 1 133 2.31e-35 134
MS.gene041325.t1 MTR_5g039970 79.375 160 25 2 5 164 1 152 2.93e-70 223
MS.gene041325.t1 MTR_5g039970 59.794 97 35 1 144 240 243 335 1.86e-18 85.5
MS.gene041325.t1 MTR_4g130200 59.701 201 79 2 158 357 192 391 2.70e-69 222
MS.gene041325.t1 MTR_4g130200 51.587 126 26 2 13 137 10 101 2.22e-26 108
MS.gene041325.t1 MTR_4g080787 52.093 215 98 3 144 357 253 463 2.21e-50 176
MS.gene041325.t1 MTR_4g080787 51.333 150 57 4 1 138 1 146 2.25e-33 129
MS.gene041325.t1 MTR_4g080773 50.235 213 104 2 144 355 253 464 2.56e-48 170
MS.gene041325.t1 MTR_4g080773 51.333 150 57 4 1 138 1 146 5.27e-33 128
MS.gene041325.t1 MTR_4g080773 50.235 213 104 2 144 355 253 464 4.30e-48 169
MS.gene041325.t1 MTR_4g080773 51.333 150 57 4 1 138 1 146 5.72e-33 128
MS.gene041325.t1 MTR_5g039950 44.578 249 134 4 112 358 174 420 1.32e-46 164
MS.gene041325.t1 MTR_5g039950 50.365 137 51 2 1 137 1 120 8.25e-35 132
MS.gene041325.t1 MTR_4g080807 46.581 234 115 5 123 349 93 323 2.44e-45 160
MS.gene041325.t1 MTR_7g023310 49.065 214 101 4 144 355 247 454 2.21e-39 145
MS.gene041325.t1 MTR_7g023310 41.818 165 84 5 1 157 1 161 1.67e-28 115
MS.gene041325.t1 MTR_3g048290 40.686 204 114 2 1 197 1 204 3.13e-37 140
MS.gene041325.t1 MTR_3g048290 42.222 270 133 8 104 357 202 464 8.25e-34 130
MS.gene041325.t1 MTR_4g080590 51.095 137 63 1 1 137 1 133 3.38e-36 135
MS.gene041325.t1 MTR_4g080590 60.976 123 46 1 145 267 240 360 5.84e-35 132
MS.gene041325.t1 MTR_4g081030 35.833 240 96 4 123 358 203 388 6.22e-26 107
MS.gene041325.t1 MTR_7g039630 48.000 125 63 2 144 267 215 338 2.79e-23 99.4
MS.gene041325.t1 MTR_7g039630 35.976 164 65 2 1 164 1 124 2.27e-22 96.7
MS.gene041325.t1 MTR_4g080813 68.966 58 18 0 12 69 8 65 8.49e-23 91.7
MS.gene041325.t1 MTR_2g094750 50.000 88 43 1 21 107 88 175 5.40e-18 85.5
MS.gene041325.t1 MTR_2g094750 42.857 126 66 4 144 265 334 457 9.57e-14 72.4
MS.gene041325.t1 MTR_2g072710 40.164 122 64 4 199 320 46 158 4.19e-14 70.9
MS.gene041325.t1 MTR_2g082800 27.225 191 124 6 10 193 16 198 7.31e-14 72.8
MS.gene041325.t1 MTR_4g032845 32.240 183 113 6 145 324 232 406 2.18e-13 71.2
MS.gene041325.t1 MTR_5g005690 31.633 196 123 4 152 341 279 469 1.06e-12 69.3
MS.gene041325.t1 MTR_6g018660 46.988 83 36 1 12 94 9 83 1.51e-12 68.6
MS.gene041325.t1 MTR_8g077460 27.907 344 199 15 22 325 9 343 5.16e-12 67.0
MS.gene041325.t1 MTR_5g054920 29.268 123 80 2 213 332 66 184 5.83e-12 64.3
MS.gene041325.t1 MTR_8g467800 35.870 92 56 2 14 105 11 99 7.15e-12 66.2
MS.gene041325.t1 MTR_8g467800 35.870 92 56 2 14 105 11 99 1.07e-11 66.2
MS.gene041325.t1 MTR_5g021550 33.058 121 75 2 22 136 18 138 1.56e-11 62.4
MS.gene041325.t1 MTR_8g014290 31.579 152 87 4 22 156 9 160 3.96e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041325.t1 AT5G22730 30.519 154 98 4 176 323 282 432 2.20e-12 68.6
MS.gene041325.t1 AT5G22730 30.519 154 98 4 176 323 282 432 2.20e-12 68.6

Find 65 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTCTGGTGTTGATTT+TGG 0.148987 5.2:-29883387 None:intergenic
AACTTTACAGCTTCAATTTC+AGG 0.166237 5.2:-29883987 None:intergenic
TTAGAAAATGCCACAGTCTT+AGG 0.187503 5.2:+29884014 MS.gene041325:CDS
TTTCCACTTTGTAGCTAATA+TGG 0.218479 5.2:-29882675 None:intergenic
CTTTGGAGCTTCGGTAAAAT+TGG 0.258230 5.2:-29882551 None:intergenic
GGAATTCTTATCAAAAGATT+TGG 0.279201 5.2:+29884058 MS.gene041325:CDS
TATTGCCTATATCATGTCTT+TGG 0.286603 5.2:-29882568 None:intergenic
GGAAGTTCTTCACATTTCTA+AGG 0.299285 5.2:+29883769 MS.gene041325:CDS
AGCTAATTCTTTGTTATCTT+CGG 0.308106 5.2:+29882877 MS.gene041325:CDS
GACGCATCTTGACGTGCTCT+TGG 0.332611 5.2:+29883688 MS.gene041325:CDS
AAGACATGATATAGGCAATA+TGG 0.336639 5.2:+29882571 MS.gene041325:CDS
TTGCACAATGAGTAATATTC+TGG 0.338434 5.2:-29883399 None:intergenic
ACGCATCTTGACGTGCTCTT+GGG 0.340451 5.2:+29883689 MS.gene041325:CDS
CAATCCTTCATCCAAGAATA+AGG 0.344425 5.2:-29883889 None:intergenic
TATGCATCAACTATGGAGAT+AGG 0.361165 5.2:-29883340 None:intergenic
ATCAATATATGCATCAACTA+TGG 0.376573 5.2:-29883347 None:intergenic
TAGAAAATGCCACAGTCTTA+GGG 0.390278 5.2:+29884015 MS.gene041325:CDS
GTACAACAAGCTGATATTGA+TGG 0.395299 5.2:+29882848 MS.gene041325:CDS
GTTCTTACAGCATCTTTAGT+AGG 0.397467 5.2:-29882650 None:intergenic
GAGTTATTGAGTCGACTTGC+TGG 0.405823 5.2:+29883424 MS.gene041325:CDS
GGAGATCAACATTGTTTGTT+CGG 0.410030 5.2:+29884037 MS.gene041325:CDS
TCTCCACAAGACTCCTAATC+TGG 0.414930 5.2:+29883748 MS.gene041325:CDS
ACTTGGCAAATGTATGGTCT+AGG 0.422387 5.2:-29882934 None:intergenic
TGGAGAAGCTTGCTGATGTC+AGG 0.423605 5.2:+29884078 MS.gene041325:CDS
ATATCATGTCTTTGGAGCTT+CGG 0.433182 5.2:-29882560 None:intergenic
CCAATTGCAACCTTTAGGCC+TGG 0.433710 5.2:+29884103 MS.gene041325:CDS
CAATTGCAACCTTTAGGCCT+GGG 0.433939 5.2:+29884104 MS.gene041325:CDS
AGGAACCAATTGCAACCTTT+AGG 0.435215 5.2:+29884098 MS.gene041325:CDS
GAAAATCAAAGACGGATAAG+TGG 0.437767 5.2:-29882709 None:intergenic
ATGTGAAGAACTTCCAGATT+AGG 0.448255 5.2:-29883761 None:intergenic
TGACATCAAATTCATTGCCT+TGG 0.454394 5.2:+29883910 MS.gene041325:CDS
CAACATCAAATTTGATTGCA+CGG 0.455049 5.2:-29883258 None:intergenic
ACACAAACTTGGCAAATGTA+TGG 0.460308 5.2:-29882940 None:intergenic
CCAGGCCTAAAGGTTGCAAT+TGG 0.465560 5.2:-29884103 None:intergenic
GGCAATATGGAAGATATGAT+TGG 0.472912 5.2:+29882584 MS.gene041325:CDS
AAGCTCCAAAGACATGATAT+AGG 0.484886 5.2:+29882563 MS.gene041325:CDS
ATTATCAAATCATACTCGTC+AGG 0.486709 5.2:+29883462 MS.gene041325:CDS
GGAAAATTGCCTCATAGATC+AGG 0.490060 5.2:+29882775 MS.gene041325:CDS
CTAGGGAAAGTTTAAGATCA+AGG 0.498420 5.2:-29882916 None:intergenic
CGCATCTTGACGTGCTCTTG+GGG 0.507553 5.2:+29883690 MS.gene041325:CDS
ACACAACTCCCCAGGCCTAA+AGG 0.514481 5.2:-29884113 None:intergenic
GAATGCAAAGTCTTTCTACA+TGG 0.517105 5.2:-29882823 None:intergenic
CTTGGCAAATGTATGGTCTA+GGG 0.521734 5.2:-29882933 None:intergenic
GGAGTTGTGTCATTAAGCTT+CGG 0.525668 5.2:+29884126 MS.gene041325:CDS
CTATGGAGATAGGGTTAACA+AGG 0.527720 5.2:-29883330 None:intergenic
ATATGAAGAAGAACGGCCTC+AGG 0.530569 5.2:-29882614 None:intergenic
AATGCCTGCTAATACTTCAC+TGG 0.534698 5.2:-29883726 None:intergenic
CTTCCAGATTAGGAGTCTTG+TGG 0.537229 5.2:-29883751 None:intergenic
ATGCATCAACTATGGAGATA+GGG 0.545206 5.2:-29883339 None:intergenic
CTTCCATATTAGCTACAAAG+TGG 0.559991 5.2:+29882672 MS.gene041325:CDS
GTCACCAGTGAAGTATTAGC+AGG 0.567638 5.2:+29883722 MS.gene041325:CDS
GTTTGTCCACCTGATCTATG+AGG 0.579288 5.2:-29882784 None:intergenic
CTACAAAGTGGAAATACTTG+TGG 0.581650 5.2:+29882684 MS.gene041325:CDS
AGAAAGAATATGAAGAAGAA+CGG 0.583530 5.2:-29882621 None:intergenic
AAAATCAAAGACGGATAAGT+GGG 0.605687 5.2:-29882708 None:intergenic
GCTTAATGACACAACTCCCC+AGG 0.612288 5.2:-29884121 None:intergenic
GTTGATCTCCCCTAAGACTG+TGG 0.625886 5.2:-29884024 None:intergenic
GTCAAAGCCAGAACATAAGT+CGG 0.626996 5.2:+29882754 MS.gene041325:CDS
AAATTGCCTCATAGATCAGG+TGG 0.634665 5.2:+29882778 MS.gene041325:CDS
TGCGTCAAATTGCAGAACGA+AGG 0.636297 5.2:-29883671 None:intergenic
AATTGCAACCTTTAGGCCTG+GGG 0.636606 5.2:+29884105 MS.gene041325:CDS
ATAAACTTGAAAATCAAAGA+CGG 0.648132 5.2:-29882717 None:intergenic
AGAGAAGATGTGAAACACCA+AGG 0.685986 5.2:-29883927 None:intergenic
AGAAAATGCCACAGTCTTAG+GGG 0.697274 5.2:+29884016 MS.gene041325:CDS
TATGATTGGTGAATTACCTG+AGG 0.712908 5.2:+29882598 MS.gene041325:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAGTTTATTGTAATT+CGG + chr5.2:29882727-29882746 MS.gene041325:CDS 15.0%
!! AATACATAAAGAATATGCAA+TGG - chr5.2:29883581-29883600 None:intergenic 20.0%
!! ACAAGGAAAAAATTTATAGT+TGG - chr5.2:29883316-29883335 None:intergenic 20.0%
!! ATAAACTTGAAAATCAAAGA+CGG - chr5.2:29882720-29882739 None:intergenic 20.0%
!!! AATAAGTTGTGTTTAGAATT+TGG + chr5.2:29882995-29883014 MS.gene041325:intron 20.0%
!!! AGATATAATGTTTTCAAGTT+AGG - chr5.2:29883055-29883074 None:intergenic 20.0%
!!! GATATAATGTTTTCAAGTTA+GGG - chr5.2:29883054-29883073 None:intergenic 20.0%
! AACACAACTTATTCAATGAT+TGG - chr5.2:29882988-29883007 None:intergenic 25.0%
! AATTTATTGACAATGTTGCT+TGG + chr5.2:29883537-29883556 MS.gene041325:intron 25.0%
! ACACAACTTATTCAATGATT+GGG - chr5.2:29882987-29883006 None:intergenic 25.0%
! AGAAAGAATATGAAGAAGAA+CGG - chr5.2:29882624-29882643 None:intergenic 25.0%
! ATCAATATATGCATCAACTA+TGG - chr5.2:29883350-29883369 None:intergenic 25.0%
! GAAAAAATTTATAGTTGGAC+TGG - chr5.2:29883311-29883330 None:intergenic 25.0%
! GGAATTCTTATCAAAAGATT+TGG + chr5.2:29884058-29884077 MS.gene041325:CDS 25.0%
! TGTCCAAACAAATTTATACA+AGG - chr5.2:29883152-29883171 None:intergenic 25.0%
!! AGCTAATTCTTTGTTATCTT+CGG + chr5.2:29882877-29882896 MS.gene041325:CDS 25.0%
!! ATTTATTGACAATGTTGCTT+GGG + chr5.2:29883538-29883557 MS.gene041325:intron 25.0%
!! TGACCTTGTATAAATTTGTT+TGG + chr5.2:29883146-29883165 MS.gene041325:intron 25.0%
!! TGTTCTATTTCAGATTTTCT+TGG + chr5.2:29883957-29883976 MS.gene041325:CDS 25.0%
!!! AATATTCTGGTGTTGATTTT+GGG - chr5.2:29883389-29883408 None:intergenic 25.0%
!!! TAATATTCTGGTGTTGATTT+TGG - chr5.2:29883390-29883409 None:intergenic 25.0%
!!! TGTTTATTGATTCTTGTGTA+GGG + chr5.2:29883861-29883880 MS.gene041325:intron 25.0%
!!! TTGTTTATTGATTCTTGTGT+AGG + chr5.2:29883860-29883879 MS.gene041325:intron 25.0%
AAAATCAAAGACGGATAAGT+GGG - chr5.2:29882711-29882730 None:intergenic 30.0%
AACTTTACAGCTTCAATTTC+AGG - chr5.2:29883990-29884009 None:intergenic 30.0%
AAGACATGATATAGGCAATA+TGG + chr5.2:29882571-29882590 MS.gene041325:CDS 30.0%
AATGGTCAACTTACTTAATG+TGG - chr5.2:29883203-29883222 None:intergenic 30.0%
ACTTATACCAACTAACTCAA+TGG - chr5.2:29883221-29883240 None:intergenic 30.0%
ATTATCAAATCATACTCGTC+AGG + chr5.2:29883462-29883481 MS.gene041325:CDS 30.0%
ATTATTGGGTAACACAAACT+TGG - chr5.2:29882954-29882973 None:intergenic 30.0%
CAACATCAAATTTGATTGCA+CGG - chr5.2:29883261-29883280 None:intergenic 30.0%
CATAGTTAAGACACTAGTAA+GGG - chr5.2:29883628-29883647 None:intergenic 30.0%
TATTGCCTATATCATGTCTT+TGG - chr5.2:29882571-29882590 None:intergenic 30.0%
TTCAGTCTATATATACCTGA+TGG + chr5.2:29883019-29883038 MS.gene041325:intron 30.0%
TTGCACAATGAGTAATATTC+TGG - chr5.2:29883402-29883421 None:intergenic 30.0%
TTTCCACTTTGTAGCTAATA+TGG - chr5.2:29882678-29882697 None:intergenic 30.0%
! GAGTTAGTTGGTATAAGTTA+TGG + chr5.2:29883223-29883242 MS.gene041325:intron 30.0%
! TTTTCCTTATTCTTGGATGA+AGG + chr5.2:29883885-29883904 MS.gene041325:CDS 30.0%
!!! ATATTCTGGTGTTGATTTTG+GGG - chr5.2:29883388-29883407 None:intergenic 30.0%
AAGCTCCAAAGACATGATAT+AGG + chr5.2:29882563-29882582 MS.gene041325:CDS 35.0%
AAGTTGACCATTGAGTTAGT+TGG + chr5.2:29883211-29883230 MS.gene041325:intron 35.0%
ACACAAACTTGGCAAATGTA+TGG - chr5.2:29882943-29882962 None:intergenic 35.0%
ATGCATCAACTATGGAGATA+GGG - chr5.2:29883342-29883361 None:intergenic 35.0%
ATGTGAAGAACTTCCAGATT+AGG - chr5.2:29883764-29883783 None:intergenic 35.0%
CAATCCTTCATCCAAGAATA+AGG - chr5.2:29883892-29883911 None:intergenic 35.0%
CTACAAAGTGGAAATACTTG+TGG + chr5.2:29882684-29882703 MS.gene041325:CDS 35.0%
CTTCCATATTAGCTACAAAG+TGG + chr5.2:29882672-29882691 MS.gene041325:CDS 35.0%
GAAAATCAAAGACGGATAAG+TGG - chr5.2:29882712-29882731 None:intergenic 35.0%
GAATGCAAAGTCTTTCTACA+TGG - chr5.2:29882826-29882845 None:intergenic 35.0%
GCATAGTTAAGACACTAGTA+AGG - chr5.2:29883629-29883648 None:intergenic 35.0%
GGAAGTTCTTCACATTTCTA+AGG + chr5.2:29883769-29883788 MS.gene041325:CDS 35.0%
GGAGATCAACATTGTTTGTT+CGG + chr5.2:29884037-29884056 MS.gene041325:CDS 35.0%
GGCAATATGGAAGATATGAT+TGG + chr5.2:29882584-29882603 MS.gene041325:CDS 35.0%
GTACAACAAGCTGATATTGA+TGG + chr5.2:29882848-29882867 MS.gene041325:CDS 35.0%
GTTCTTACAGCATCTTTAGT+AGG - chr5.2:29882653-29882672 None:intergenic 35.0%
TAGAAAATGCCACAGTCTTA+GGG + chr5.2:29884015-29884034 MS.gene041325:CDS 35.0%
TATACAAGGTCAACTCTTGT+AGG - chr5.2:29883138-29883157 None:intergenic 35.0%
TATGATTGGTGAATTACCTG+AGG + chr5.2:29882598-29882617 MS.gene041325:CDS 35.0%
TATGCATCAACTATGGAGAT+AGG - chr5.2:29883343-29883362 None:intergenic 35.0%
TGACATCAAATTCATTGCCT+TGG + chr5.2:29883910-29883929 MS.gene041325:CDS 35.0%
TGGGATGCTGAGAAATTATT+GGG - chr5.2:29882968-29882987 None:intergenic 35.0%
TTACTATTAGCCGTGAAACA+TGG - chr5.2:29883820-29883839 None:intergenic 35.0%
TTAGAAAATGCCACAGTCTT+AGG + chr5.2:29884014-29884033 MS.gene041325:CDS 35.0%
TTCCTTCGTAAATGAGAAGT+CGG + chr5.2:29883084-29883103 MS.gene041325:intron 35.0%
TTGGGATGCTGAGAAATTAT+TGG - chr5.2:29882969-29882988 None:intergenic 35.0%
! CAATTTTCCGACTTATGTTC+TGG - chr5.2:29882764-29882783 None:intergenic 35.0%
! CTAGGGAAAGTTTAAGATCA+AGG - chr5.2:29882919-29882938 None:intergenic 35.0%
! GTAGGGATTTTCCTTATTCT+TGG + chr5.2:29883878-29883897 MS.gene041325:intron 35.0%
!! ATATCATGTCTTTGGAGCTT+CGG - chr5.2:29882563-29882582 None:intergenic 35.0%
AAATTGCCTCATAGATCAGG+TGG + chr5.2:29882778-29882797 MS.gene041325:CDS 40.0%
AATGCCTGCTAATACTTCAC+TGG - chr5.2:29883729-29883748 None:intergenic 40.0%
ACTTGGCAAATGTATGGTCT+AGG - chr5.2:29882937-29882956 None:intergenic 40.0%
AGAAAATGCCACAGTCTTAG+GGG + chr5.2:29884016-29884035 MS.gene041325:CDS 40.0%
AGAGAAGATGTGAAACACCA+AGG - chr5.2:29883930-29883949 None:intergenic 40.0%
AGGAACCAATTGCAACCTTT+AGG + chr5.2:29884098-29884117 MS.gene041325:CDS 40.0%
CTATGGAGATAGGGTTAACA+AGG - chr5.2:29883333-29883352 None:intergenic 40.0%
CTTGGCAAATGTATGGTCTA+GGG - chr5.2:29882936-29882955 None:intergenic 40.0%
GCTTCTTCTACCATGTTTCA+CGG + chr5.2:29883807-29883826 MS.gene041325:intron 40.0%
GGAAAATTGCCTCATAGATC+AGG + chr5.2:29882775-29882794 MS.gene041325:CDS 40.0%
GTCAAAGCCAGAACATAAGT+CGG + chr5.2:29882754-29882773 MS.gene041325:CDS 40.0%
TTAGGGAAACGTATACCATC+AGG - chr5.2:29883037-29883056 None:intergenic 40.0%
! GGAGTTGTGTCATTAAGCTT+CGG + chr5.2:29884126-29884145 MS.gene041325:CDS 40.0%
! TAAATGAGAAGTCGGCTCAA+CGG + chr5.2:29883092-29883111 MS.gene041325:intron 40.0%
!! CTTTGGAGCTTCGGTAAAAT+TGG - chr5.2:29882554-29882573 None:intergenic 40.0%
AAGGTCAACTCTTGTAGGAC+AGG - chr5.2:29883133-29883152 None:intergenic 45.0%
AATTGCAACCTTTAGGCCTG+GGG + chr5.2:29884105-29884124 MS.gene041325:CDS 45.0%
AGGTCAACTCTTGTAGGACA+GGG - chr5.2:29883132-29883151 None:intergenic 45.0%
ATATGAAGAAGAACGGCCTC+AGG - chr5.2:29882617-29882636 None:intergenic 45.0%
CAATTGCAACCTTTAGGCCT+GGG + chr5.2:29884104-29884123 MS.gene041325:CDS 45.0%
CTTCCAGATTAGGAGTCTTG+TGG - chr5.2:29883754-29883773 None:intergenic 45.0%
GTTTGTCCACCTGATCTATG+AGG - chr5.2:29882787-29882806 None:intergenic 45.0%
TCTCCACAAGACTCCTAATC+TGG + chr5.2:29883748-29883767 MS.gene041325:CDS 45.0%
TGCGTCAAATTGCAGAACGA+AGG - chr5.2:29883674-29883693 None:intergenic 45.0%
! AGCCGACTTCTCATTTACGA+AGG - chr5.2:29883089-29883108 None:intergenic 45.0%
! GTCACCAGTGAAGTATTAGC+AGG + chr5.2:29883722-29883741 MS.gene041325:CDS 45.0%
!! GAGTTATTGAGTCGACTTGC+TGG + chr5.2:29883424-29883443 MS.gene041325:CDS 45.0%
ACGCATCTTGACGTGCTCTT+GGG + chr5.2:29883689-29883708 MS.gene041325:CDS 50.0%
CCAATTGCAACCTTTAGGCC+TGG + chr5.2:29884103-29884122 MS.gene041325:CDS 50.0%
CCAGGCCTAAAGGTTGCAAT+TGG - chr5.2:29884106-29884125 None:intergenic 50.0%
GCTTAATGACACAACTCCCC+AGG - chr5.2:29884124-29884143 None:intergenic 50.0%
GTTGATCTCCCCTAAGACTG+TGG - chr5.2:29884027-29884046 None:intergenic 50.0%
!! TGGAGAAGCTTGCTGATGTC+AGG + chr5.2:29884078-29884097 MS.gene041325:CDS 50.0%
ACACAACTCCCCAGGCCTAA+AGG - chr5.2:29884116-29884135 None:intergenic 55.0%
CGCATCTTGACGTGCTCTTG+GGG + chr5.2:29883690-29883709 MS.gene041325:CDS 55.0%
GACGCATCTTGACGTGCTCT+TGG + chr5.2:29883688-29883707 MS.gene041325:CDS 55.0%
! CGGCTCAACGGCTTTTGTCT+GGG + chr5.2:29883104-29883123 MS.gene041325:intron 55.0%
! TCGGCTCAACGGCTTTTGTC+TGG + chr5.2:29883103-29883122 MS.gene041325:intron 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 29882530 29884151 29882530 ID=MS.gene041325
chr5.2 mRNA 29882530 29884151 29882530 ID=MS.gene041325.t1;Parent=MS.gene041325
chr5.2 exon 29882530 29882954 29882530 ID=MS.gene041325.t1.exon1;Parent=MS.gene041325.t1
chr5.2 CDS 29882530 29882954 29882530 ID=cds.MS.gene041325.t1;Parent=MS.gene041325.t1
chr5.2 exon 29883258 29883483 29883258 ID=MS.gene041325.t1.exon2;Parent=MS.gene041325.t1
chr5.2 CDS 29883258 29883483 29883258 ID=cds.MS.gene041325.t1;Parent=MS.gene041325.t1
chr5.2 exon 29883635 29883790 29883635 ID=MS.gene041325.t1.exon3;Parent=MS.gene041325.t1
chr5.2 CDS 29883635 29883790 29883635 ID=cds.MS.gene041325.t1;Parent=MS.gene041325.t1
chr5.2 exon 29883882 29884151 29883882 ID=MS.gene041325.t1.exon4;Parent=MS.gene041325.t1
chr5.2 CDS 29883882 29884151 29883882 ID=cds.MS.gene041325.t1;Parent=MS.gene041325.t1
Gene Sequence

>MS.gene041325

ATGTCTGCTACAATCACATCACCAATTTTACCGAAGCTCCAAAGACATGATATAGGCAATATGGAAGATATGATTGGTGAATTACCTGAGGCCGTTCTTCTTCATATTCTTTCTTTACTTCCTACTAAAGATGCTGTAAGAACTTCCATATTAGCTACAAAGTGGAAATACTTGTGGACCCACTTATCCGTCTTTGATTTTCAAGTTTATTGTAATTCGGATGTGTCAAAGCCAGAACATAAGTCGGAAAATTGCCTCATAGATCAGGTGGACAAACTACTTCACACATCTAACCATGTAGAAAGACTTTGCATTCAAGTACAACAAGCTGATATTGATGGAGAAAAAGCTAATTCTTTGTTATCTTCGGCATTGATGCACAAACTCCTTGATCTTAAACTTTCCCTAGACCATACATTTGCCAAGTTTGTGTTACCCAATAATTTCTCAGCATCCCAATCATTGAATAAGTTGTGTTTAGAATTTGGTTTCAGTCTATATATACCTGATGGTATACGTTTCCCTAACTTGAAAACATTATATCTTTCACATCTTTCCTTCGTAAATGAGAAGTCGGCTCAACGGCTTTTGTCTGGGTGCCCTGTCCTACAAGAGTTGACCTTGTATAAATTTGTTTGGACAAACATAAAACAGATCGATGTTTCAATTTCCACATTAAGTAAGTTGACCATTGAGTTAGTTGGTATAAGTTATGGTCGTTTTCACAGCCGTGCAATCAAATTTGATGTTGTGAATCTTTTATCTTTAAGCTACTCAGCCAGTCCAACTATAAATTTTTTCCTTGTTAACCCTATCTCCATAGTTGATGCATATATTGATCTTGTGTATTACAATCCCCAAAATCAACACCAGAATATTACTCATTGTGCAATTGAGTTATTGAGTCGACTTGCTGGTGTCAAATCTCTTAGATTATCAAATCATACTCGTCAGGTATGTTTTATTGTTTACTTATCATCTTCATTTTTCTAAATGTTGTATATCATAATTTATTGACAATGTTGCTTGGGTTATGTGCTTCTTGATTCCATTGCATATTCTTTATGTATTACAATGATGTATCTATTTTTGTTTCCCTTACTAGTGTCTTAACTATGCAAAAGACGCTCTTCATCTTTTGCCTTCGTTCTGCAATTTGACGCATCTTGACGTGCTCTTGGGGTATTTTTACGTCACCAGTGAAGTATTAGCAGGCATTCTCCACAAGACTCCTAATCTGGAAGTTCTTCACATTTCTAAGGTACATCACGTATCTTGCTTCTTCTACCATGTTTCACGGCTAATAGTAAAATTATTTCTGTTCATTAACTTGTTTATTGATTCTTGTGTAGGGATTTTCCTTATTCTTGGATGAAGGATTGACATCAAATTCATTGCCTTGGTGTTTCACATCTTCTCTCAAAGTATGTTCTATTTCAGATTTTCTTGGAGATGAACCTGAAATTGAAGCTGTAAAGTTTTTGTTAGAAAATGCCACAGTCTTAGGGGAGATCAACATTGTTTGTTCGGAATTCTTATCAAAAGATTTGGAGAAGCTTGCTGATGTCAGGAACCAATTGCAACCTTTAGGCCTGGGGAGTTGTGTCATTAAGCTTCGGTAA
Protein sequence

>MS.gene041325.t1

MSATITSPILPKLQRHDIGNMEDMIGELPEAVLLHILSLLPTKDAVRTSILATKWKYLWTHLSVFDFQVYCNSDVSKPEHKSENCLIDQVDKLLHTSNHVERLCIQVQQADIDGEKANSLLSSALMHKLLDLKLSLDHTFANRAIKFDVVNLLSLSYSASPTINFFLVNPISIVDAYIDLVYYNPQNQHQNITHCAIELLSRLAGVKSLRLSNHTRQCLNYAKDALHLLPSFCNLTHLDVLLGYFYVTSEVLAGILHKTPNLEVLHISKGFSLFLDEGLTSNSLPWCFTSSLKVCSISDFLGDEPEIEAVKFLLENATVLGEINIVCSEFLSKDLEKLADVRNQLQPLGLGSCVIKLR