AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031575


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031575.t1 MTR_4g080590 95.395 456 20 1 1 455 1 456 0.0 878
MS.gene031575.t1 MTR_4g080590 95.028 362 17 1 1 361 1 362 0.0 691
MS.gene031575.t1 MTR_4g080787 46.429 476 226 8 1 455 1 468 1.38e-123 369
MS.gene031575.t1 MTR_3g048290 47.447 470 231 7 1 455 1 469 2.35e-123 368
MS.gene031575.t1 MTR_4g130200 47.124 452 170 7 1 447 1 388 2.87e-117 349
MS.gene031575.t1 MTR_4g080773 44.989 469 232 8 1 448 1 464 1.75e-113 343
MS.gene031575.t1 MTR_4g080773 44.989 469 232 8 1 448 1 464 2.58e-113 343
MS.gene031575.t1 MTR_5g039950 44.662 459 207 6 1 451 1 420 5.75e-109 328
MS.gene031575.t1 MTR_7g023310 45.376 465 230 12 1 450 1 456 2.23e-104 318
MS.gene031575.t1 MTR_5g039970 53.235 340 145 5 5 335 1 335 1.52e-101 306
MS.gene031575.t1 MTR_7g023330 41.048 458 194 12 6 451 3 396 4.17e-87 271
MS.gene031575.t1 MTR_7g039630 43.514 370 166 6 1 359 1 338 3.54e-78 247
MS.gene031575.t1 MTR_4g080807 41.899 358 168 5 90 442 1 323 2.79e-70 229
MS.gene031575.t1 MTR_2g094750 43.316 374 171 14 21 357 88 457 1.11e-63 214
MS.gene031575.t1 MTR_4g081030 37.534 373 205 9 13 370 7 366 3.02e-53 183
MS.gene031575.t1 MTR_5g005690 27.766 461 270 12 9 418 3 451 1.52e-33 132
MS.gene031575.t1 MTR_2g072530 25.917 436 308 11 15 441 5 434 3.86e-26 110
MS.gene031575.t1 MTR_5g080710 28.235 425 274 15 6 419 17 421 1.55e-24 105
MS.gene031575.t1 MTR_4g045900 24.494 494 290 18 23 445 26 507 4.24e-23 102
MS.gene031575.t1 MTR_4g080813 59.722 72 29 0 5 76 1 72 1.83e-22 92.0
MS.gene031575.t1 MTR_8g467800 28.670 436 257 18 14 418 11 423 3.40e-22 99.0
MS.gene031575.t1 MTR_1g082260 40.278 144 83 1 73 213 23 166 3.80e-21 90.9
MS.gene031575.t1 MTR_5g084070 26.055 403 272 10 23 419 13 395 1.72e-20 94.0
MS.gene031575.t1 MTR_7g094030 26.742 445 261 17 12 420 19 434 2.62e-19 90.5
MS.gene031575.t1 MTR_8g062270 27.964 447 273 18 20 434 13 442 6.09e-19 89.4
MS.gene031575.t1 MTR_1g090883 27.913 369 219 13 15 359 11 356 3.22e-18 86.3
MS.gene031575.t1 MTR_4g032845 25.778 450 279 16 21 438 1 427 7.63e-18 85.9
MS.gene031575.t1 MTR_2g082850 26.781 351 232 12 22 355 21 363 1.42e-17 84.3
MS.gene031575.t1 MTR_2g082800 26.492 419 255 18 9 406 15 401 3.13e-17 84.0
MS.gene031575.t1 MTR_7g026500 25.336 446 220 16 23 434 14 380 4.44e-17 83.2
MS.gene031575.t1 MTR_7g088260 24.709 429 235 15 17 429 85 441 3.13e-16 81.3
MS.gene031575.t1 MTR_2g007500 26.562 384 206 16 23 395 14 332 3.32e-16 80.1
MS.gene031575.t1 MTR_0049s0110 26.540 422 251 18 23 423 8 391 4.13e-16 80.5
MS.gene031575.t1 MTR_3g108150 24.941 425 231 16 22 429 12 365 2.07e-15 78.2
MS.gene031575.t1 MTR_3g448340 25.459 436 270 18 23 418 6 426 3.30e-15 77.8
MS.gene031575.t1 MTR_3g026920 24.524 420 240 15 21 418 17 381 4.38e-15 77.4
MS.gene031575.t1 MTR_8g467800 29.964 277 168 12 14 275 11 276 8.30e-15 75.9
MS.gene031575.t1 MTR_7g075820 24.122 427 231 16 22 419 5 367 1.38e-14 75.5
MS.gene031575.t1 MTR_7g098510 24.598 435 233 17 7 421 2 361 1.47e-14 75.5
MS.gene031575.t1 MTR_5g073420 22.951 427 246 13 23 438 11 365 1.53e-14 75.5
MS.gene031575.t1 MTR_1g038710 25.349 430 268 17 23 419 19 428 1.84e-14 75.5
MS.gene031575.t1 MTR_6g018660 24.722 360 214 12 12 338 9 344 1.92e-14 75.1
MS.gene031575.t1 MTR_5g083890 23.043 447 245 13 22 432 5 388 2.56e-14 75.5
MS.gene031575.t1 MTR_8g058965 26.923 442 266 18 14 419 4 424 4.96e-14 74.3
MS.gene031575.t1 MTR_2g072720 24.891 458 300 17 11 444 31 468 5.54e-14 74.3
MS.gene031575.t1 MTR_2g091145 24.826 431 256 16 23 423 21 413 5.67e-14 73.9
MS.gene031575.t1 MTR_8g468840 25.527 427 271 18 21 418 12 420 7.42e-14 73.6
MS.gene031575.t1 MTR_0049s0110 30.435 207 133 7 23 224 8 208 8.66e-14 72.0
MS.gene031575.t1 MTR_1g038760 26.171 363 232 12 14 359 6 349 8.78e-14 72.8
MS.gene031575.t1 MTR_5g038430 31.081 222 139 9 14 226 87 303 1.24e-13 73.2
MS.gene031575.t1 MTR_8g066650 28.049 328 219 9 16 335 73 391 2.17e-13 72.4
MS.gene031575.t1 MTR_3g107160 30.392 204 105 6 20 202 7 194 2.51e-13 71.6
MS.gene031575.t1 MTR_3g023330 26.703 367 226 13 12 352 2 351 2.56e-13 71.6
MS.gene031575.t1 MTR_0049s0110 30.435 207 133 7 23 224 8 208 2.71e-13 71.2
MS.gene031575.t1 MTR_0049s0110 30.435 207 133 7 23 224 8 208 2.74e-13 71.2
MS.gene031575.t1 MTR_4g032730 22.747 466 302 16 20 443 12 461 3.79e-13 71.6
MS.gene031575.t1 MTR_3g108560 23.474 426 241 16 17 429 14 367 5.03e-13 70.9
MS.gene031575.t1 MTR_1g038760 25.602 332 218 9 14 335 6 318 5.04e-13 70.5
MS.gene031575.t1 MTR_7g056433 25.116 430 231 16 20 429 9 367 6.90e-13 70.5
MS.gene031575.t1 MTR_2g082880 24.350 423 272 15 20 420 7 403 8.08e-13 70.5
MS.gene031575.t1 MTR_1g011410 24.654 361 193 11 18 362 2 299 1.28e-12 70.5
MS.gene031575.t1 MTR_1g013630 29.082 196 124 7 23 206 39 231 1.51e-12 69.3
MS.gene031575.t1 MTR_6g088700 27.660 329 214 12 22 338 13 329 1.58e-12 69.3
MS.gene031575.t1 MTR_0227s0010 29.952 207 120 9 14 205 6 202 2.02e-12 68.6
MS.gene031575.t1 MTR_2g047848 25.180 417 259 15 23 416 7 393 3.74e-12 68.2
MS.gene031575.t1 MTR_7g098480 23.721 430 235 15 7 418 2 356 4.84e-12 68.2
MS.gene031575.t1 MTR_2g072730 24.215 446 283 17 1 417 1 420 6.39e-12 67.8
MS.gene031575.t1 MTR_3g107100 24.205 409 240 14 20 418 8 356 8.06e-12 67.0
MS.gene031575.t1 MTR_2g082780 27.094 203 137 8 26 221 15 213 8.32e-12 65.1
MS.gene031575.t1 MTR_1g021825 28.378 222 124 8 23 226 17 221 1.10e-11 67.0
MS.gene031575.t1 MTR_7g055943 24.490 441 250 16 4 426 21 396 1.13e-11 67.0
MS.gene031575.t1 MTR_1g021825 28.378 222 124 8 23 226 88 292 1.22e-11 67.0
MS.gene031575.t1 MTR_1g011430 27.876 226 151 6 23 239 7 229 1.35e-11 66.2
MS.gene031575.t1 MTR_2g094450 36.872 179 83 9 195 362 31 190 1.38e-11 63.9
MS.gene031575.t1 MTR_1g021820 30.263 228 132 10 23 232 28 246 2.03e-11 66.2
MS.gene031575.t1 MTR_8g017280 27.053 207 124 6 22 208 35 234 2.90e-11 64.7
MS.gene031575.t1 MTR_2g082860 45.000 80 42 2 11 88 14 93 3.22e-11 60.8
MS.gene031575.t1 MTR_8g017280 27.053 207 124 6 22 208 35 234 5.65e-11 64.7
MS.gene031575.t1 MTR_3g110010 29.834 181 124 3 22 202 12 189 5.79e-11 65.1
MS.gene031575.t1 MTR_1g014450 27.876 226 145 9 23 234 16 237 5.84e-11 64.7
MS.gene031575.t1 MTR_6g025160 24.609 256 173 7 13 259 91 335 6.32e-11 64.3
MS.gene031575.t1 MTR_8g014260 26.606 436 271 16 22 429 15 429 9.74e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031575.t1 AT3G58880 29.195 435 255 17 21 419 1 418 1.48e-30 123
MS.gene031575.t1 AT4G14096 27.669 459 286 16 22 450 7 449 5.41e-30 122
MS.gene031575.t1 AT4G14096 27.669 459 286 16 22 450 7 449 5.41e-30 122
MS.gene031575.t1 AT3G58860 28.603 451 288 15 23 451 7 445 1.11e-29 120
MS.gene031575.t1 AT3G59210 29.590 463 264 17 22 441 6 449 6.11e-29 119
MS.gene031575.t1 AT3G59210 29.590 463 264 17 22 441 6 449 6.11e-29 119
MS.gene031575.t1 AT3G59210 29.590 463 264 17 22 441 6 449 6.11e-29 119
MS.gene031575.t1 AT3G59210 29.590 463 264 17 22 441 6 449 6.11e-29 119
MS.gene031575.t1 AT3G59210 29.590 463 264 17 22 441 6 449 6.11e-29 119
MS.gene031575.t1 AT5G53840 28.140 430 287 13 19 441 14 428 1.22e-27 115
MS.gene031575.t1 AT3G58900 28.935 432 263 14 23 419 2 424 4.28e-27 113
MS.gene031575.t1 AT4G14103 28.571 357 231 11 22 361 7 356 2.83e-26 110
MS.gene031575.t1 AT4G14103 28.571 357 231 11 22 361 7 356 2.83e-26 110
MS.gene031575.t1 AT4G14103 26.667 450 277 16 22 450 7 424 3.53e-26 110
MS.gene031575.t1 AT4G13965 26.835 436 280 15 23 446 10 418 4.61e-26 110
MS.gene031575.t1 AT1G78840 29.216 421 253 16 22 418 4 403 4.01e-25 107
MS.gene031575.t1 AT1G78840 29.216 421 253 16 22 418 4 403 4.01e-25 107
MS.gene031575.t1 AT3G59230 26.915 483 285 21 14 446 4 468 7.13e-25 107
MS.gene031575.t1 AT1G32375 27.119 413 260 13 23 418 2 390 8.13e-25 106
MS.gene031575.t1 AT1G32375 27.119 413 260 13 23 418 2 390 8.13e-25 106
MS.gene031575.t1 AT3G03030 27.126 435 279 13 23 423 2 432 9.27e-25 107
MS.gene031575.t1 AT3G59200 26.261 476 261 19 22 434 6 454 2.75e-24 105
MS.gene031575.t1 AT4G22280 28.182 440 277 15 23 451 2 413 4.76e-24 104
MS.gene031575.t1 AT5G56420 25.432 405 274 11 22 418 5 389 4.96e-24 104
MS.gene031575.t1 AT5G56420 25.432 405 274 11 22 418 5 389 4.96e-24 104
MS.gene031575.t1 AT5G56420 25.432 405 274 11 22 418 5 389 4.96e-24 104
MS.gene031575.t1 AT5G44950 26.179 424 265 14 22 418 3 405 5.93e-24 104
MS.gene031575.t1 AT5G25860 27.529 425 261 13 22 418 11 416 1.28e-23 103
MS.gene031575.t1 AT1G55030 25.180 417 261 15 16 414 2 385 1.32e-23 102
MS.gene031575.t1 AT1G55030 25.301 415 263 15 16 414 12 395 1.34e-23 103
MS.gene031575.t1 AT1G51370 27.918 437 255 18 17 429 13 413 1.39e-23 103
MS.gene031575.t1 AT3G59240 26.802 444 284 15 22 433 7 441 1.59e-23 103
MS.gene031575.t1 AT4G22280 30.747 348 211 11 23 359 2 330 3.66e-23 100
MS.gene031575.t1 AT1G66290 25.891 421 287 13 19 428 25 431 5.02e-23 101
MS.gene031575.t1 AT1G66300 25.647 425 287 15 23 433 29 438 6.42e-23 101
MS.gene031575.t1 AT2G42730 26.588 425 278 13 20 418 2 418 1.24e-22 100
MS.gene031575.t1 AT1G13780 25.431 464 293 17 23 451 10 455 2.78e-22 99.4
MS.gene031575.t1 AT3G59250 28.434 415 247 14 22 419 6 387 3.46e-22 99.0
MS.gene031575.t1 AT3G50710 25.618 445 282 16 23 445 2 419 7.30e-22 97.8
MS.gene031575.t1 AT3G03040 26.376 436 268 16 23 419 2 423 7.52e-22 98.2
MS.gene031575.t1 AT3G59200 26.630 368 226 12 22 357 6 361 1.44e-21 96.3
MS.gene031575.t1 AT5G56440 26.877 413 268 10 23 418 2 397 1.59e-21 97.1
MS.gene031575.t1 AT3G28410 26.444 329 205 13 12 328 19 322 1.60e-21 97.4
MS.gene031575.t1 AT5G53635 28.571 420 258 15 24 418 1 403 2.35e-21 96.3
MS.gene031575.t1 AT1G16930 24.941 421 279 13 23 418 15 423 2.49e-21 96.7
MS.gene031575.t1 AT1G16930 24.941 421 279 13 23 418 15 423 2.49e-21 96.7
MS.gene031575.t1 AT1G16930 24.941 421 279 13 23 418 15 423 2.49e-21 96.7
MS.gene031575.t1 AT3G59170 28.982 452 252 18 22 419 6 442 3.08e-21 96.3
MS.gene031575.t1 AT2G29930 27.918 437 264 21 14 418 4 421 3.26e-21 96.3
MS.gene031575.t1 AT2G29930 27.918 437 264 21 14 418 4 421 3.26e-21 96.3
MS.gene031575.t1 AT5G22720 27.483 433 252 16 22 416 22 430 5.56e-21 95.5
MS.gene031575.t1 AT3G26922 28.030 264 179 6 15 273 6 263 6.00e-21 93.6
MS.gene031575.t1 AT3G26922 28.030 264 179 6 15 273 6 263 6.00e-21 93.6
MS.gene031575.t1 AT1G58310 28.238 386 227 13 17 361 2 378 6.43e-21 95.5
MS.gene031575.t1 AT5G38590 25.114 438 285 13 23 446 2 410 6.88e-21 94.7
MS.gene031575.t1 AT4G10400 26.027 438 281 14 23 449 2 407 8.22e-21 94.7
MS.gene031575.t1 AT4G10400 26.027 438 281 14 23 449 2 407 8.22e-21 94.7
MS.gene031575.t1 AT4G10400 26.027 438 281 14 23 449 2 407 8.22e-21 94.7
MS.gene031575.t1 AT3G58980 27.314 443 271 17 23 431 2 427 1.24e-20 95.1
MS.gene031575.t1 AT3G44060 24.654 434 305 11 28 451 4 425 1.98e-20 93.6
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 2.02e-20 92.8
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 2.02e-20 92.8
MS.gene031575.t1 AT3G49030 25.056 443 284 19 22 445 20 433 2.09e-20 93.6
MS.gene031575.t1 AT5G56380 26.244 442 288 16 23 443 2 426 3.71e-20 92.8
MS.gene031575.t1 AT5G56380 26.244 442 288 16 23 443 2 426 3.71e-20 92.8
MS.gene031575.t1 AT5G41840 29.534 386 222 15 18 361 9 386 4.35e-20 93.2
MS.gene031575.t1 AT3G58960 26.327 452 262 18 23 419 2 437 4.56e-20 92.8
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 5.09e-20 92.0
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 5.09e-20 92.0
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 5.09e-20 92.0
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 5.09e-20 92.0
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 20 360 8.95e-20 91.7
MS.gene031575.t1 AT3G59000 26.484 438 267 15 23 419 2 425 9.92e-20 92.0
MS.gene031575.t1 AT5G02700 26.911 327 207 13 11 328 17 320 1.04e-19 91.7
MS.gene031575.t1 AT1G06630 28.531 354 224 12 22 359 11 351 1.08e-19 91.7
MS.gene031575.t1 AT4G00315 31.667 240 144 8 23 252 2 231 1.20e-19 91.3
MS.gene031575.t1 AT3G58930 25.850 441 275 14 23 419 2 434 1.28e-19 91.7
MS.gene031575.t1 AT3G58930 25.850 441 275 14 23 419 2 434 1.28e-19 91.7
MS.gene031575.t1 AT3G58930 25.850 441 275 14 23 419 2 434 1.28e-19 91.7
MS.gene031575.t1 AT1G78750 25.333 450 305 15 23 450 18 458 1.31e-19 91.3
MS.gene031575.t1 AT1G78750 25.333 450 305 15 23 450 18 458 1.31e-19 91.3
MS.gene031575.t1 AT1G51370 31.111 225 119 7 17 226 13 216 1.42e-19 90.1
MS.gene031575.t1 AT1G51370 31.111 225 119 7 17 226 13 216 2.22e-19 90.5
MS.gene031575.t1 AT5G56400 24.887 442 298 10 23 451 33 453 3.57e-19 90.1
MS.gene031575.t1 AT5G38590 31.754 211 134 5 23 228 2 207 5.60e-19 87.4
MS.gene031575.t1 AT3G59160 27.692 390 224 12 22 361 12 393 7.83e-19 89.0
MS.gene031575.t1 AT5G22670 26.812 414 273 14 22 418 10 410 1.10e-18 88.6
MS.gene031575.t1 AT5G22730 24.029 412 290 9 22 416 27 432 1.13e-18 88.6
MS.gene031575.t1 AT5G22730 24.029 412 290 9 22 416 27 432 1.13e-18 88.6
MS.gene031575.t1 AT3G59190 26.781 407 251 15 22 399 11 399 1.47e-18 88.6
MS.gene031575.t1 AT4G00160 25.393 445 286 15 22 445 15 434 1.99e-18 87.8
MS.gene031575.t1 AT1G66320 25.172 437 291 16 17 434 23 442 2.01e-18 87.8
MS.gene031575.t1 AT3G60040 25.561 446 289 15 22 443 229 655 2.11e-18 88.6
MS.gene031575.t1 AT3G60040 25.561 446 289 15 22 443 231 657 2.25e-18 88.6
MS.gene031575.t1 AT3G60040 25.561 446 289 15 22 443 12 438 2.31e-18 88.2
MS.gene031575.t1 AT3G60040 25.561 446 289 15 22 443 232 658 2.32e-18 88.6
MS.gene031575.t1 AT3G60040 25.561 446 289 15 22 443 231 657 2.36e-18 88.6
MS.gene031575.t1 AT3G52680 26.591 440 274 18 22 441 20 430 2.77e-18 87.4
MS.gene031575.t1 AT3G58900 29.430 316 196 10 23 314 2 314 2.85e-18 85.9
MS.gene031575.t1 AT1G69630 25.293 427 287 14 11 418 6 419 3.86e-18 87.0
MS.gene031575.t1 AT5G22660 26.265 415 276 12 22 418 12 414 8.18e-18 85.9
MS.gene031575.t1 AT3G58900 29.299 314 195 10 23 312 2 312 8.65e-18 84.7
MS.gene031575.t1 AT3G58900 29.299 314 195 10 23 312 2 312 8.65e-18 84.7
MS.gene031575.t1 AT4G10420 26.936 297 177 11 135 418 22 291 8.96e-18 84.3
MS.gene031575.t1 AT5G02930 26.791 321 203 13 23 328 28 331 1.08e-17 85.5
MS.gene031575.t1 AT5G56810 24.009 454 300 14 15 450 5 431 1.28e-17 85.1
MS.gene031575.t1 AT3G59190 27.671 365 227 14 22 357 11 367 1.41e-17 84.7
MS.gene031575.t1 AT1G66310 26.777 422 278 16 12 418 8 413 2.10e-17 84.7
MS.gene031575.t1 AT1G55660 26.340 429 273 15 18 419 48 460 2.31e-17 84.7
MS.gene031575.t1 AT4G13960 26.047 430 270 14 23 419 2 416 2.54e-17 84.3
MS.gene031575.t1 AT4G13960 26.047 430 270 14 23 419 2 416 2.54e-17 84.3
MS.gene031575.t1 AT5G44980 22.951 427 302 12 22 431 3 419 3.37e-17 84.0
MS.gene031575.t1 AT5G44980 22.951 427 302 12 22 431 3 419 3.37e-17 84.0
MS.gene031575.t1 AT5G50270 26.950 423 252 16 23 418 2 394 3.56e-17 83.6
MS.gene031575.t1 AT3G26922 26.718 262 160 5 15 273 6 238 4.85e-17 81.6
MS.gene031575.t1 AT5G56810 25.993 277 173 8 15 273 5 267 5.35e-17 82.0
MS.gene031575.t1 AT3G26930 25.362 414 266 14 22 416 20 409 7.08e-17 83.2
MS.gene031575.t1 AT1G55660 30.415 217 141 6 18 226 48 262 7.20e-17 82.4
MS.gene031575.t1 AT5G41830 25.310 403 242 16 22 383 12 396 1.21e-16 82.8
MS.gene031575.t1 AT2G26030 23.697 422 280 18 23 416 4 411 1.67e-16 82.0
MS.gene031575.t1 AT2G26030 23.866 419 278 17 23 416 4 406 2.22e-16 81.6
MS.gene031575.t1 AT2G26030 23.866 419 278 17 23 416 4 406 2.22e-16 81.6
MS.gene031575.t1 AT5G27750 21.978 455 305 16 23 441 5 445 2.58e-16 81.3
MS.gene031575.t1 AT2G42720 25.229 436 275 13 23 425 2 419 3.70e-16 80.9
MS.gene031575.t1 AT3G52680 27.401 354 210 15 22 359 20 342 5.77e-16 79.7
MS.gene031575.t1 AT5G56410 28.571 210 130 4 32 221 12 221 7.27e-16 80.1
MS.gene031575.t1 AT3G49030 23.690 439 269 18 22 445 20 407 8.14e-16 79.7
MS.gene031575.t1 AT3G59150 26.852 432 277 11 23 419 13 440 1.09e-15 79.7
MS.gene031575.t1 AT5G56690 26.108 406 243 17 25 401 4 381 1.70e-15 78.6
MS.gene031575.t1 AT3G49480 25.280 447 284 14 10 430 1 423 2.59e-15 78.2
MS.gene031575.t1 AT5G60610 24.455 413 267 15 23 418 2 386 3.03e-15 77.8
MS.gene031575.t1 AT5G60610 24.455 413 267 15 23 418 2 386 3.03e-15 77.8
MS.gene031575.t1 AT5G38396 24.318 440 278 16 23 422 2 426 3.08e-15 78.2
MS.gene031575.t1 AT1G78760 23.326 433 285 14 22 431 15 423 3.49e-15 77.8
MS.gene031575.t1 AT5G15620 27.727 440 272 18 23 434 2 423 4.02e-15 77.8
MS.gene031575.t1 AT2G04230 25.000 448 284 15 22 443 12 433 4.11e-15 77.8
MS.gene031575.t1 AT5G56820 22.273 440 289 13 23 445 15 418 4.23e-15 77.4
MS.gene031575.t1 AT5G35995 26.316 475 280 20 22 451 4 453 5.38e-15 77.4
MS.gene031575.t1 AT5G35995 26.316 475 280 20 22 451 4 453 5.38e-15 77.4
MS.gene031575.t1 AT3G58930 25.346 434 252 14 23 419 2 400 7.11e-15 77.0
MS.gene031575.t1 AT3G58930 25.346 434 252 14 23 419 2 400 7.11e-15 77.0
MS.gene031575.t1 AT4G13985 24.651 430 295 12 19 427 15 436 7.33e-15 77.0
MS.gene031575.t1 AT4G26340 24.429 438 279 16 23 442 2 405 8.03e-15 76.6
MS.gene031575.t1 AT4G09920 28.774 212 141 5 23 228 2 209 1.00e-14 75.1
MS.gene031575.t1 AT4G09920 28.774 212 141 5 23 228 2 209 1.00e-14 75.1
MS.gene031575.t1 AT4G09920 28.774 212 141 5 23 228 2 209 1.00e-14 75.1
MS.gene031575.t1 AT3G58920 25.510 490 285 22 23 453 2 470 1.13e-14 76.3
MS.gene031575.t1 AT4G15060 27.371 369 213 15 17 341 18 375 1.34e-14 75.9
MS.gene031575.t1 AT3G62430 27.460 437 274 15 23 434 2 420 1.54e-14 75.9
MS.gene031575.t1 AT3G03030 26.183 317 217 8 23 323 2 317 1.58e-14 75.1
MS.gene031575.t1 AT5G02920 31.188 202 120 7 11 207 16 203 1.63e-14 73.9
MS.gene031575.t1 AT1G06630 27.715 267 173 9 22 275 11 270 1.72e-14 74.3
MS.gene031575.t1 AT1G13780 27.338 278 168 10 23 277 10 276 1.73e-14 74.7
MS.gene031575.t1 AT3G44810 27.900 319 210 9 28 333 12 323 2.13e-14 75.5
MS.gene031575.t1 AT4G09920 28.774 212 141 5 23 228 2 209 2.48e-14 74.3
MS.gene031575.t1 AT4G09920 28.774 212 141 5 23 228 2 209 2.48e-14 74.3
MS.gene031575.t1 AT1G60400 26.190 336 211 12 17 334 8 324 2.68e-14 74.7
MS.gene031575.t1 AT2G26860 23.798 416 276 13 23 418 2 396 2.71e-14 74.7
MS.gene031575.t1 AT2G26860 23.798 416 276 13 23 418 2 396 2.71e-14 74.7
MS.gene031575.t1 AT5G56370 25.185 405 250 16 23 409 2 371 3.49e-14 74.7
MS.gene031575.t1 AT5G56370 25.185 405 250 16 23 409 2 371 3.49e-14 74.7
MS.gene031575.t1 AT4G27050 26.400 375 219 17 23 361 4 357 4.67e-14 74.3
MS.gene031575.t1 AT4G27050 26.400 375 219 17 23 361 4 357 4.67e-14 74.3
MS.gene031575.t1 AT4G27050 26.400 375 219 17 23 361 4 357 4.67e-14 74.3
MS.gene031575.t1 AT4G27050 26.400 375 219 17 23 361 4 357 4.67e-14 74.3
MS.gene031575.t1 AT4G27050 26.400 375 219 17 23 361 4 357 4.67e-14 74.3
MS.gene031575.t1 AT3G26922 25.523 239 167 6 40 273 2 234 7.55e-14 72.0
MS.gene031575.t1 AT3G26922 25.523 239 167 6 40 273 2 234 7.55e-14 72.0
MS.gene031575.t1 AT3G51530 25.169 445 273 20 22 441 29 438 8.64e-14 73.6
MS.gene031575.t1 AT1G52650 24.709 429 278 15 23 419 2 417 9.48e-14 73.6
MS.gene031575.t1 AT4G00320 26.098 387 231 17 22 369 12 382 1.37e-13 73.2
MS.gene031575.t1 AT5G41630 27.966 354 214 16 17 336 6 352 3.70e-13 71.6
MS.gene031575.t1 AT5G38390 24.651 430 271 16 23 419 2 411 4.24e-13 71.6
MS.gene031575.t1 AT5G44960 21.615 421 265 13 23 418 5 385 4.38e-13 71.2
MS.gene031575.t1 AT4G03220 22.689 476 306 17 23 445 24 490 4.73e-13 71.6
MS.gene031575.t1 AT3G26930 23.773 387 252 14 49 416 2 364 4.82e-13 70.9
MS.gene031575.t1 AT3G49020 23.503 451 293 15 13 442 12 431 6.80e-13 70.9
MS.gene031575.t1 AT3G49040 25.379 264 173 10 22 273 16 267 7.16e-13 69.7
MS.gene031575.t1 AT1G13570 29.630 216 132 8 18 224 1 205 8.47e-13 69.3
MS.gene031575.t1 AT5G56370 25.501 349 213 13 23 359 2 315 1.02e-12 69.3
MS.gene031575.t1 AT1G16940 25.381 197 130 5 23 213 11 196 1.12e-12 70.1
MS.gene031575.t1 AT2G29930 27.213 305 180 15 145 418 8 301 1.65e-12 68.9
MS.gene031575.t1 AT5G02910 26.816 358 219 16 20 360 8 339 2.06e-12 68.6
MS.gene031575.t1 AT5G02910 27.374 358 217 17 20 360 8 339 3.26e-12 68.2
MS.gene031575.t1 AT5G02910 27.374 358 217 17 20 360 8 339 3.43e-12 68.6
MS.gene031575.t1 AT1G13570 29.130 230 136 9 18 231 1 219 3.56e-12 68.6
MS.gene031575.t1 AT1G13570 29.130 230 136 9 18 231 1 219 3.56e-12 68.6
MS.gene031575.t1 AT3G49150 26.039 457 291 17 22 445 15 457 3.77e-12 68.6
MS.gene031575.t1 AT4G15060 28.311 219 149 6 23 234 172 389 4.59e-12 68.6
MS.gene031575.t1 AT5G22610 24.083 436 271 17 21 416 16 431 4.99e-12 68.2
MS.gene031575.t1 AT5G56430 25.614 285 183 7 145 418 58 324 9.63e-12 66.6
MS.gene031575.t1 AT3G42770 25.301 415 268 18 28 422 4 396 1.21e-11 67.0
MS.gene031575.t1 AT1G21990 25.469 373 228 13 22 361 8 363 1.52e-11 66.6
MS.gene031575.t1 AT5G22610 24.178 426 253 16 21 416 16 401 2.39e-11 65.9
MS.gene031575.t1 AT1G22000 31.844 179 117 2 25 203 31 204 2.50e-11 65.9
MS.gene031575.t1 AT5G62970 24.945 453 264 18 36 440 16 440 2.72e-11 65.9
MS.gene031575.t1 AT1G80960 24.289 457 287 19 5 441 36 453 2.99e-11 65.9
MS.gene031575.t1 AT5G03100 22.327 318 220 11 19 329 5 302 3.87e-11 64.3
MS.gene031575.t1 AT5G03100 22.327 318 220 11 19 329 5 302 3.87e-11 64.3
MS.gene031575.t1 AT5G44490 23.598 428 294 13 22 428 16 431 4.55e-11 65.1
MS.gene031575.t1 AT5G44490 23.598 428 294 13 22 428 16 431 4.56e-11 65.1
MS.gene031575.t1 AT5G22660 25.573 262 186 4 22 277 12 270 4.98e-11 64.3
MS.gene031575.t1 AT1G80470 26.031 388 237 17 23 386 15 376 5.49e-11 64.7
MS.gene031575.t1 AT5G52460 28.652 178 93 2 22 199 16 159 7.70e-11 63.9
MS.gene031575.t1 AT5G27750 21.591 352 230 13 23 340 5 344 8.32e-11 63.9
MS.gene031575.t1 AT1G80960 25.630 476 281 23 5 441 36 477 9.26e-11 64.3
MS.gene031575.t1 AT1G80960 25.630 476 281 23 5 441 36 477 9.26e-11 64.3
MS.gene031575.t1 AT1G80960 25.630 476 281 23 5 441 36 477 9.26e-11 64.3

Find 80 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAATTTCTTCACATTTA+TGG 0.090305 4.4:+31177779 MS.gene031575:CDS
CAACATGCAGTTCATTATTT+TGG 0.141567 4.4:-31177138 None:intergenic
ACTAAGTTGGATATTGTATT+TGG 0.151222 4.4:+31176752 MS.gene031575:CDS
GAAAATCAAAGACGGGTAAT+TGG 0.233443 4.4:-31176478 None:intergenic
TAGAATTTCTTCACATTTAT+GGG 0.250696 4.4:+31177780 MS.gene031575:CDS
TATCACCCACATTATGTCTT+TGG 0.262830 4.4:-31176337 None:intergenic
ACCTACTATTTCTAGATTCT+AGG 0.280979 4.4:-31176691 None:intergenic
AAACTTCACCAATCTGATTT+CGG 0.294077 4.4:-31178011 None:intergenic
CCTGCATTAACAATAGTTAC+TGG 0.304860 4.4:-31176608 None:intergenic
GTTGATGCAAATATTGATCT+TGG 0.309181 4.4:+31177103 MS.gene031575:CDS
TAGAAAATGTCACGTTCTTA+AGG 0.323129 4.4:+31178038 MS.gene031575:CDS
ATGTGAAGAAATTCTAGTTT+AGG 0.324682 4.4:-31177773 None:intergenic
ATCAATATTTGCATCAACTA+TGG 0.332138 4.4:-31177098 None:intergenic
GCTATCAGATGAAACTATTC+AGG 0.345809 4.4:+31177213 MS.gene031575:CDS
CCGGGATGCCGAGAAACTAT+TGG 0.361036 4.4:-31176723 None:intergenic
ATTCTAGTTTAGGACTCTTT+CGG 0.366674 4.4:-31177763 None:intergenic
TTAGGGATCTTACTTATCCT+TGG 0.372669 4.4:+31177898 MS.gene031575:intron
ACAAGGAAACAATTTATAGT+TGG 0.386110 4.4:-31177064 None:intergenic
CAAGGAAACAATTTATAGTT+GGG 0.388932 4.4:-31177063 None:intergenic
AGGAACCAATTGCAAGCTTT+AGG 0.419691 4.4:+31178121 MS.gene031575:CDS
CGGGATGCCGAGAAACTATT+GGG 0.428862 4.4:-31176722 None:intergenic
TTGATGCAAATATTGATCTT+GGG 0.429706 4.4:+31177104 MS.gene031575:CDS
AAAATCAAAGACGGGTAATT+GGG 0.435838 4.4:-31176477 None:intergenic
CCATGCCTAAAGCTTGCAAT+TGG 0.438162 4.4:-31178126 None:intergenic
TGTGTTACCCAATAGTTTCT+CGG 0.443039 4.4:+31176715 MS.gene031575:CDS
CCAGTAACTATTGTTAATGC+AGG 0.451607 4.4:+31176608 MS.gene031575:CDS
ACCTAGAATCTAGAAATAGT+AGG 0.456966 4.4:+31176690 MS.gene031575:CDS
AGAAAATGTCACGTTCTTAA+GGG 0.467231 4.4:+31178039 MS.gene031575:CDS
GGTGACTTAGAATTTCGCTT+TGG 0.469597 4.4:-31176512 None:intergenic
AATTCCAACATTGAAGAAGT+TGG 0.478445 4.4:+31176949 MS.gene031575:CDS
TTGGTAGTGTCGAGTCTCTC+AGG 0.484028 4.4:+31177191 MS.gene031575:CDS
ACTAGATCTACGAGGCAATC+TGG 0.484619 4.4:-31176533 None:intergenic
TTCTCGTCTCTCTACGGAAG+AGG 0.486845 4.4:+31176409 MS.gene031575:CDS
AAGATAATATCTTCAAGCTA+TGG 0.487718 4.4:-31176808 None:intergenic
ATGTCCAACTTCTTCAATGT+TGG 0.494500 4.4:-31176953 None:intergenic
GGTTGGATTTGTGAAGTAGT+TGG 0.497013 4.4:-31176559 None:intergenic
GGATCTTACTTATCCTTGGA+TGG 0.498856 4.4:+31177902 MS.gene031575:CDS
AAGGACAACTCTTGTAAGAC+AGG 0.508600 4.4:-31176887 None:intergenic
TAAACTCCAAAGACATAATG+TGG 0.514913 4.4:+31176331 MS.gene031575:CDS
TACCATCAGGTACAGAATCA+AGG 0.516438 4.4:-31176778 None:intergenic
CTAGGTTAAGTGTAAGATCA+TGG 0.524663 4.4:-31176673 None:intergenic
TATCCAACTTAGTCAATGAC+CGG 0.525404 4.4:-31176742 None:intergenic
CGCATCAAATTCTTGAACGA+AGG 0.528751 4.4:-31177692 None:intergenic
TTCCTTGATTCTGTACCTGA+TGG 0.531110 4.4:+31176776 MS.gene031575:CDS
ATTGAGCTGTTCAGTCGTCT+TGG 0.533363 4.4:+31177172 MS.gene031575:CDS
ATCCCGGTCATTGACTAAGT+TGG 0.539690 4.4:+31176739 MS.gene031575:CDS
CCAATAGTTTCTCGGCATCC+CGG 0.540751 4.4:+31176723 MS.gene031575:CDS
CTATGGAGGTAGAGTTAACA+AGG 0.542514 4.4:-31177081 None:intergenic
ACTTAAAGATAAAAGATTCA+CGG 0.544302 4.4:-31177029 None:intergenic
AATATAATGAAGAATTCCCT+CGG 0.546133 4.4:-31176384 None:intergenic
CAATTGCAAGCTTTAGGCAT+GGG 0.547449 4.4:+31178127 MS.gene031575:CDS
AGCCGACTTCTCATTTGTGA+AGG 0.550930 4.4:-31176843 None:intergenic
GGAGATGAACATTTACTGTA+CGG 0.552497 4.4:+31178060 MS.gene031575:CDS
AGATGAAGCCGAAATCAGAT+TGG 0.557556 4.4:+31178003 MS.gene031575:CDS
CTATGGAAACAGATACCATC+AGG 0.559011 4.4:-31176791 None:intergenic
AGAGAAGATTTGAAACAGCA+AGG 0.559103 4.4:-31177950 None:intergenic
TATTCTTTCTCGTCTCTCTA+CGG 0.559151 4.4:+31176403 MS.gene031575:CDS
CTTCTATATTAGCAACAAAG+TGG 0.565241 4.4:+31176441 MS.gene031575:CDS
AAATCTCGAAAATCAAAGAC+GGG 0.570247 4.4:-31176485 None:intergenic
TATCCTTGGATGGTGAAGAC+TGG 0.573895 4.4:+31177912 MS.gene031575:CDS
TGTCCAGTCTTCACCATCCA+AGG 0.574526 4.4:-31177915 None:intergenic
CCAATTGCAAGCTTTAGGCA+TGG 0.576197 4.4:+31178126 MS.gene031575:CDS
AGATTGCCTCGTAGATCTAG+TGG 0.576199 4.4:+31176535 MS.gene031575:CDS
TACCTTCACAAATGAGAAGT+CGG 0.580484 4.4:+31176841 MS.gene031575:CDS
TAAATCTCGAAAATCAAAGA+CGG 0.582283 4.4:-31176486 None:intergenic
TCATTAACTTGCGTCACTCG+TGG 0.584904 4.4:+31178158 MS.gene031575:CDS
GAGATGAACATTTACTGTAC+GGG 0.586511 4.4:+31178061 MS.gene031575:CDS
CAGTAACTATTGTTAATGCA+GGG 0.596957 4.4:+31176609 MS.gene031575:CDS
ATATAATGAAGAATTCCCTC+GGG 0.598954 4.4:-31176383 None:intergenic
AGAATTTCTTCACATTTATG+GGG 0.604749 4.4:+31177781 MS.gene031575:CDS
CGAAGAAGCTGGCTGATGTG+AGG 0.621819 4.4:+31178101 MS.gene031575:CDS
ATGATTAGCGATTTACCCGA+GGG 0.622620 4.4:+31176368 MS.gene031575:CDS
ATGTCTGCTAATACTTCACA+AGG 0.623262 4.4:-31177737 None:intergenic
AATATTTGCATCAACTATGG+AGG 0.633314 4.4:-31177095 None:intergenic
ATCCAACTTAGTCAATGACC+GGG 0.636154 4.4:-31176741 None:intergenic
CAACAAAGTGGAGATACTTG+TGG 0.640766 4.4:+31176453 MS.gene031575:CDS
TATGATTAGCGATTTACCCG+AGG 0.648778 4.4:+31176367 MS.gene031575:CDS
AAACTCCAAAGACATAATGT+GGG 0.676914 4.4:+31176332 MS.gene031575:CDS
AGGACAACTCTTGTAAGACA+GGG 0.690229 4.4:-31176886 None:intergenic
GTTGGTCCACTAGATCTACG+AGG 0.818443 4.4:-31176541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAGTTAAATTAAATG+AGG - chr4.4:31177362-31177381 None:intergenic 10.0%
!! TAAAAAGTTAAATTAAATGA+GGG - chr4.4:31177361-31177380 None:intergenic 10.0%
!! AAAAAGTTAAATTAAATGAG+GGG - chr4.4:31177360-31177379 None:intergenic 15.0%
!! ATGTAATTGATCAAATTTAA+TGG - chr4.4:31177460-31177479 None:intergenic 15.0%
!! AAATTATTGTTAGCCATTAA+AGG - chr4.4:31177843-31177862 None:intergenic 20.0%
!! AAGAATATGCAAATAATACA+AGG - chr4.4:31177592-31177611 None:intergenic 20.0%
!! ACTTAAAGATAAAAGATTCA+CGG - chr4.4:31177032-31177051 None:intergenic 20.0%
!! GATCAATTACATTTCTTAAT+AGG + chr4.4:31177468-31177487 MS.gene031575:intron 20.0%
!! TAGAATTTCTTCACATTTAT+GGG + chr4.4:31177780-31177799 MS.gene031575:CDS 20.0%
!! TTGCTTATATTTCATTACAA+AGG - chr4.4:31177292-31177311 None:intergenic 20.0%
!!! ACAGACTTGATTTTTTTTAT+TGG + chr4.4:31177427-31177446 MS.gene031575:intron 20.0%
!!! TATGTTTTGATTCTTGTTTA+GGG + chr4.4:31177881-31177900 MS.gene031575:intron 20.0%
!!! TTATGTTTTGATTCTTGTTT+AGG + chr4.4:31177880-31177899 MS.gene031575:intron 20.0%
! AAACAAAAACAAGTCAAGAT+CGG - chr4.4:31177626-31177645 None:intergenic 25.0%
! AAGATAATATCTTCAAGCTA+TGG - chr4.4:31176811-31176830 None:intergenic 25.0%
! AATATAATGAAGAATTCCCT+CGG - chr4.4:31176387-31176406 None:intergenic 25.0%
! ACAAGGAAACAATTTATAGT+TGG - chr4.4:31177067-31177086 None:intergenic 25.0%
! AGAATTTCTTCACATTTATG+GGG + chr4.4:31177781-31177800 MS.gene031575:CDS 25.0%
! ATCAATATTTGCATCAACTA+TGG - chr4.4:31177101-31177120 None:intergenic 25.0%
! ATGACCCAATTTATTAATCA+TGG + chr4.4:31177389-31177408 MS.gene031575:intron 25.0%
! ATTGTTAAATAAGATCGAAG+TGG - chr4.4:31177322-31177341 None:intergenic 25.0%
! CAAGGAAACAATTTATAGTT+GGG - chr4.4:31177066-31177085 None:intergenic 25.0%
! CTAGAATTTCTTCACATTTA+TGG + chr4.4:31177779-31177798 MS.gene031575:CDS 25.0%
! TAAATCTCGAAAATCAAAGA+CGG - chr4.4:31176489-31176508 None:intergenic 25.0%
! TTGATGCAAATATTGATCTT+GGG + chr4.4:31177104-31177123 MS.gene031575:CDS 25.0%
!! ACTAAGTTGGATATTGTATT+TGG + chr4.4:31176752-31176771 MS.gene031575:CDS 25.0%
!!! ATGTGAAGAAATTCTAGTTT+AGG - chr4.4:31177776-31177795 None:intergenic 25.0%
!!! CAATGAAGAGCTTTTTTATA+CGG - chr4.4:31176583-31176602 None:intergenic 25.0%
AAAATCAAAGACGGGTAATT+GGG - chr4.4:31176480-31176499 None:intergenic 30.0%
AAACTCCAAAGACATAATGT+GGG + chr4.4:31176332-31176351 MS.gene031575:CDS 30.0%
AAACTTCACCAATCTGATTT+CGG - chr4.4:31178014-31178033 None:intergenic 30.0%
AAATCTCGAAAATCAAAGAC+GGG - chr4.4:31176488-31176507 None:intergenic 30.0%
AATATTTGCATCAACTATGG+AGG - chr4.4:31177098-31177117 None:intergenic 30.0%
AATTCCAACATTGAAGAAGT+TGG + chr4.4:31176949-31176968 MS.gene031575:CDS 30.0%
ACCCAATTTATTAATCATGG+AGG + chr4.4:31177392-31177411 MS.gene031575:intron 30.0%
ACCCTCCATGATTAATAAAT+TGG - chr4.4:31177397-31177416 None:intergenic 30.0%
ACCTAGAATCTAGAAATAGT+AGG + chr4.4:31176690-31176709 MS.gene031575:CDS 30.0%
AGAAAATGTCACGTTCTTAA+GGG + chr4.4:31178039-31178058 MS.gene031575:CDS 30.0%
ATATAATGAAGAATTCCCTC+GGG - chr4.4:31176386-31176405 None:intergenic 30.0%
ATCAAAAAAATCGAAGAAGC+TGG + chr4.4:31178090-31178109 MS.gene031575:CDS 30.0%
ATCACACTTCGTAATACTTA+AGG - chr4.4:31177513-31177532 None:intergenic 30.0%
CAGTAACTATTGTTAATGCA+GGG + chr4.4:31176609-31176628 MS.gene031575:CDS 30.0%
CCCAATTTATTAATCATGGA+GGG + chr4.4:31177393-31177412 MS.gene031575:intron 30.0%
CCCTCCATGATTAATAAATT+GGG - chr4.4:31177396-31177415 None:intergenic 30.0%
CTTCTATATTAGCAACAAAG+TGG + chr4.4:31176441-31176460 MS.gene031575:CDS 30.0%
GTTGATGCAAATATTGATCT+TGG + chr4.4:31177103-31177122 MS.gene031575:CDS 30.0%
TAAACTCCAAAGACATAATG+TGG + chr4.4:31176331-31176350 MS.gene031575:CDS 30.0%
TAGAAAATGTCACGTTCTTA+AGG + chr4.4:31178038-31178057 MS.gene031575:CDS 30.0%
TCACACTTCGTAATACTTAA+GGG - chr4.4:31177512-31177531 None:intergenic 30.0%
TGTCTATTGTGAATGTTGAT+TGG + chr4.4:31177560-31177579 MS.gene031575:intron 30.0%
TTATTGTTAGCCATTAAAGG+TGG - chr4.4:31177840-31177859 None:intergenic 30.0%
! CAACATGCAGTTCATTATTT+TGG - chr4.4:31177141-31177160 None:intergenic 30.0%
! TGTGATATTTCAGATTTTCG+TGG + chr4.4:31177980-31177999 MS.gene031575:CDS 30.0%
!! ACCTACTATTTCTAGATTCT+AGG - chr4.4:31176694-31176713 None:intergenic 30.0%
!! ATTCTAGTTTAGGACTCTTT+CGG - chr4.4:31177766-31177785 None:intergenic 30.0%
ATGTCCAACTTCTTCAATGT+TGG - chr4.4:31176956-31176975 None:intergenic 35.0%
ATGTCTGCTAATACTTCACA+AGG - chr4.4:31177740-31177759 None:intergenic 35.0%
CACACTTCGTAATACTTAAG+GGG - chr4.4:31177511-31177530 None:intergenic 35.0%
CATAGTTAAGACACTAGCAA+GGG - chr4.4:31177649-31177668 None:intergenic 35.0%
CCAGTAACTATTGTTAATGC+AGG + chr4.4:31176608-31176627 MS.gene031575:CDS 35.0%
CCTGCATTAACAATAGTTAC+TGG - chr4.4:31176611-31176630 None:intergenic 35.0%
CTAGGTTAAGTGTAAGATCA+TGG - chr4.4:31176676-31176695 None:intergenic 35.0%
GAAAATCAAAGACGGGTAAT+TGG - chr4.4:31176481-31176500 None:intergenic 35.0%
GAGATGAACATTTACTGTAC+GGG + chr4.4:31178061-31178080 MS.gene031575:CDS 35.0%
GCTATCAGATGAAACTATTC+AGG + chr4.4:31177213-31177232 MS.gene031575:CDS 35.0%
GGAGATGAACATTTACTGTA+CGG + chr4.4:31178060-31178079 MS.gene031575:CDS 35.0%
GTCCTTCGAAAAATGTTACT+GGG + chr4.4:31176904-31176923 MS.gene031575:CDS 35.0%
TACCTTCACAAATGAGAAGT+CGG + chr4.4:31176841-31176860 MS.gene031575:CDS 35.0%
TATCACCCACATTATGTCTT+TGG - chr4.4:31176340-31176359 None:intergenic 35.0%
TATCCAACTTAGTCAATGAC+CGG - chr4.4:31176745-31176764 None:intergenic 35.0%
TATTCTTTCTCGTCTCTCTA+CGG + chr4.4:31176403-31176422 MS.gene031575:CDS 35.0%
TGTCCTTCGAAAAATGTTAC+TGG + chr4.4:31176903-31176922 MS.gene031575:CDS 35.0%
TGTGTTACCCAATAGTTTCT+CGG + chr4.4:31176715-31176734 MS.gene031575:CDS 35.0%
TTAGGGATCTTACTTATCCT+TGG + chr4.4:31177898-31177917 MS.gene031575:intron 35.0%
! AGAGAAGATTTGAAACAGCA+AGG - chr4.4:31177953-31177972 None:intergenic 35.0%
! ATCTTGCTCCAGATTTTCTT+CGG + chr4.4:31177814-31177833 MS.gene031575:intron 35.0%
!!! GAAGAGCTTTTTTATACGGT+TGG - chr4.4:31176579-31176598 None:intergenic 35.0%
AAGGACAACTCTTGTAAGAC+AGG - chr4.4:31176890-31176909 None:intergenic 40.0%
AGATGAAGCCGAAATCAGAT+TGG + chr4.4:31178003-31178022 MS.gene031575:CDS 40.0%
AGGAACCAATTGCAAGCTTT+AGG + chr4.4:31178121-31178140 MS.gene031575:CDS 40.0%
AGGACAACTCTTGTAAGACA+GGG - chr4.4:31176889-31176908 None:intergenic 40.0%
ATCCAACTTAGTCAATGACC+GGG - chr4.4:31176744-31176763 None:intergenic 40.0%
ATGATTAGCGATTTACCCGA+GGG + chr4.4:31176368-31176387 MS.gene031575:CDS 40.0%
CAACAAAGTGGAGATACTTG+TGG + chr4.4:31176453-31176472 MS.gene031575:CDS 40.0%
CGCATCAAATTCTTGAACGA+AGG - chr4.4:31177695-31177714 None:intergenic 40.0%
CTATGGAAACAGATACCATC+AGG - chr4.4:31176794-31176813 None:intergenic 40.0%
CTATGGAGGTAGAGTTAACA+AGG - chr4.4:31177084-31177103 None:intergenic 40.0%
GCATAGTTAAGACACTAGCA+AGG - chr4.4:31177650-31177669 None:intergenic 40.0%
GGATCTTACTTATCCTTGGA+TGG + chr4.4:31177902-31177921 MS.gene031575:CDS 40.0%
GGTGACTTAGAATTTCGCTT+TGG - chr4.4:31176515-31176534 None:intergenic 40.0%
GGTTGGATTTGTGAAGTAGT+TGG - chr4.4:31176562-31176581 None:intergenic 40.0%
TACCATCAGGTACAGAATCA+AGG - chr4.4:31176781-31176800 None:intergenic 40.0%
TATGATTAGCGATTTACCCG+AGG + chr4.4:31176367-31176386 MS.gene031575:CDS 40.0%
TTCCTTGATTCTGTACCTGA+TGG + chr4.4:31176776-31176795 MS.gene031575:CDS 40.0%
! TTTTCTTCGGCCACCTTTAA+TGG + chr4.4:31177827-31177846 MS.gene031575:intron 40.0%
!! CAATTGCAAGCTTTAGGCAT+GGG + chr4.4:31178127-31178146 MS.gene031575:CDS 40.0%
!! CTCCCAGTAACATTTTTCGA+AGG - chr4.4:31176909-31176928 None:intergenic 40.0%
!!! CGGCTCAAAGACTTTTTTCT+GGG + chr4.4:31176861-31176880 MS.gene031575:CDS 40.0%
!!! TCGGCTCAAAGACTTTTTTC+TGG + chr4.4:31176860-31176879 MS.gene031575:CDS 40.0%
AAAGGTGGCCGAAGAAAATC+TGG - chr4.4:31177825-31177844 None:intergenic 45.0%
ACTAGATCTACGAGGCAATC+TGG - chr4.4:31176536-31176555 None:intergenic 45.0%
AGATTGCCTCGTAGATCTAG+TGG + chr4.4:31176535-31176554 MS.gene031575:CDS 45.0%
ATTGAGCTGTTCAGTCGTCT+TGG + chr4.4:31177172-31177191 MS.gene031575:CDS 45.0%
CCATGCCTAAAGCTTGCAAT+TGG - chr4.4:31178129-31178148 None:intergenic 45.0%
TATCCTTGGATGGTGAAGAC+TGG + chr4.4:31177912-31177931 MS.gene031575:CDS 45.0%
! AGCCGACTTCTCATTTGTGA+AGG - chr4.4:31176846-31176865 None:intergenic 45.0%
! ATCCCGGTCATTGACTAAGT+TGG + chr4.4:31176739-31176758 MS.gene031575:CDS 45.0%
!! CCAATTGCAAGCTTTAGGCA+TGG + chr4.4:31178126-31178145 MS.gene031575:CDS 45.0%
!! TCATTAACTTGCGTCACTCG+TGG + chr4.4:31178158-31178177 MS.gene031575:CDS 45.0%
CCAATAGTTTCTCGGCATCC+CGG + chr4.4:31176723-31176742 MS.gene031575:CDS 50.0%
CGGGATGCCGAGAAACTATT+GGG - chr4.4:31176725-31176744 None:intergenic 50.0%
GTTGGTCCACTAGATCTACG+AGG - chr4.4:31176544-31176563 None:intergenic 50.0%
TGTCCAGTCTTCACCATCCA+AGG - chr4.4:31177918-31177937 None:intergenic 50.0%
TTCTCGTCTCTCTACGGAAG+AGG + chr4.4:31176409-31176428 MS.gene031575:CDS 50.0%
!! TTGGTAGTGTCGAGTCTCTC+AGG + chr4.4:31177191-31177210 MS.gene031575:CDS 50.0%
CCGGGATGCCGAGAAACTAT+TGG - chr4.4:31176726-31176745 None:intergenic 55.0%
CGAAGAAGCTGGCTGATGTG+AGG + chr4.4:31178101-31178120 MS.gene031575:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31176299 31178186 31176299 ID=MS.gene031575
chr4.4 mRNA 31176299 31178186 31176299 ID=MS.gene031575.t1;Parent=MS.gene031575
chr4.4 exon 31176299 31177234 31176299 ID=MS.gene031575.t1.exon1;Parent=MS.gene031575.t1
chr4.4 CDS 31176299 31177234 31176299 ID=cds.MS.gene031575.t1;Parent=MS.gene031575.t1
chr4.4 exon 31177656 31177802 31177656 ID=MS.gene031575.t1.exon2;Parent=MS.gene031575.t1
chr4.4 CDS 31177656 31177802 31177656 ID=cds.MS.gene031575.t1;Parent=MS.gene031575.t1
chr4.4 exon 31177902 31178186 31177902 ID=MS.gene031575.t1.exon3;Parent=MS.gene031575.t1
chr4.4 CDS 31177902 31178186 31177902 ID=cds.MS.gene031575.t1;Parent=MS.gene031575.t1
Gene Sequence

>MS.gene031575

ATGGCTTCTACAATCTCATCATCAAATTTACATAAACTCCAAAGACATAATGTGGGTGATATGAAAGATATGATTAGCGATTTACCCGAGGGAATTCTTCATTATATTCTTTCTCGTCTCTCTACGGAAGAGGCTGTAAGAACTTCTATATTAGCAACAAAGTGGAGATACTTGTGGACCCAATTACCCGTCTTTGATTTTCGAGATTTATCTCCAAAGCGAAATTCTAAGTCACCAGATTGCCTCGTAGATCTAGTGGACCAACTACTTCACAAATCCAACCGTATAAAAAAGCTCTTCATTGAATTACCAGTAACTATTGTTAATGCAGGGAAAGTTAGTTCTATGTTAACTTCTGCATTGATGCATGATGTCCATGATCTTACACTTAACCTAGAATCTAGAAATAGTAGGTTTGTGTTACCCAATAGTTTCTCGGCATCCCGGTCATTGACTAAGTTGGATATTGTATTTGGCTTCCTTGATTCTGTACCTGATGGTATCTGTTTCCATAGCTTGAAGATATTATCTTTTGCACATCTTACCTTCACAAATGAGAAGTCGGCTCAAAGACTTTTTTCTGGGTGCCCTGTCTTACAAGAGTTGTCCTTCGAAAAATGTTACTGGGAGAACATAAACATTAGTGTTGCAATTCCAACATTGAAGAAGTTGGACATCTTTTTCAGATCTTCTAGTCTAGATCGTAACAGTTGTATGTTCGAAATTGATGCCGTGAATCTTTTATCTTTAAGTTACAAAAGTAACCCAACTATAAATTGTTTCCTTGTTAACTCTACCTCCATAGTTGATGCAAATATTGATCTTGGGTTTTTCTGTGTCCAAAATAATGAACTGCATGTTGCTGTATTTGCAATTGAGCTGTTCAGTCGTCTTGGTAGTGTCGAGTCTCTCAGGCTATCAGATGAAACTATTCAGGTATGTTTGAATGTTTACTTATTGTCTTCATTAATATAATATAATTATTGTACTCCTTTGTAATGAAATATAAGCAAATCTTAACCACTTCGATCTTATTTAACAATAGTATCTCTATATTACCCCTCATTTAATTTAACTTTTTATATTTTCAATGACCCAATTTATTAATCATGGAGGGTAGTTTAGACAACAGACTTGATTTTTTTTATTGGATTGCATCCATTAAATTTGATCAATTACATTTCTTAATAGGTTTAATAACAGTTTTGACCCCTTAAGTATTACGAAGTGTGATCAATTTATGTTTCTAATTTATAGATAATGTCTATTGTGAATGTTGATTGGTCATGTCCTTGTATTATTTGCATATTCTTTCAATATCACACCGATCTTGACTTGTTTTTGTTTCCCTTGCTAGTGTCTTAACTATGCAAAATCTGCTCTTCATCTTTTACCTTCGTTCAAGAATTTGATGCGTCTTGAAGTGCATTTCGATGATCCTTGTGAAGTATTAGCAGACATTCTCCGAAAGAGTCCTAAACTAGAATTTCTTCACATTTATGGGGTACATCTTGTATCTTGCTCCAGATTTTCTTCGGCCACCTTTAATGGCTAACAATAATTTTATCTCAGTCTGTTGACTTATGTTTTGATTCTTGTTTAGGGATCTTACTTATCCTTGGATGGTGAAGACTGGACATCAGATTCATTGCCTTGCTGTTTCAAATCTTCTCTCAAATCATGTGATATTTCAGATTTTCGTGGAGATGAAGCCGAAATCAGATTGGTGAAGTTTTTGTTAGAAAATGTCACGTTCTTAAGGGAGATGAACATTTACTGTACGGGATATCTATCAAAAAAATCGAAGAAGCTGGCTGATGTGAGGAACCAATTGCAAGCTTTAGGCATGGGAAGTTGTGTCATTAACTTGCGTCACTCGTGGTTTTGA

Protein sequence

>MS.gene031575.t1

MASTISSSNLHKLQRHNVGDMKDMISDLPEGILHYILSRLSTEEAVRTSILATKWRYLWTQLPVFDFRDLSPKRNSKSPDCLVDLVDQLLHKSNRIKKLFIELPVTIVNAGKVSSMLTSALMHDVHDLTLNLESRNSRFVLPNSFSASRSLTKLDIVFGFLDSVPDGICFHSLKILSFAHLTFTNEKSAQRLFSGCPVLQELSFEKCYWENINISVAIPTLKKLDIFFRSSSLDRNSCMFEIDAVNLLSLSYKSNPTINCFLVNSTSIVDANIDLGFFCVQNNELHVAVFAIELFSRLGSVESLRLSDETIQCLNYAKSALHLLPSFKNLMRLEVHFDDPCEVLADILRKSPKLEFLHIYGGSYLSLDGEDWTSDSLPCCFKSSLKSCDISDFRGDEAEIRLVKFLLENVTFLREMNIYCTGYLSKKSKKLADVRNQLQALGMGSCVINLRHSWF