AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074346

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074346.t1 MTR_2g094750 91.244 217 18 1 92 308 246 461 2.32e-138 404
MS.gene074346.t1 MTR_2g094750 65.625 96 16 1 1 96 1 79 3.67e-30 121
MS.gene074346.t1 MTR_2g094450 59.615 260 36 4 60 318 8 199 1.81e-93 279
MS.gene074346.t1 MTR_4g080787 45.425 306 150 8 96 398 172 463 1.09e-58 199
MS.gene074346.t1 MTR_4g080773 44.444 306 158 6 96 399 172 467 3.28e-56 192
MS.gene074346.t1 MTR_4g080773 44.444 306 158 6 96 399 172 467 3.85e-56 192
MS.gene074346.t1 MTR_3g048290 43.260 319 154 11 92 398 161 464 1.41e-52 182
MS.gene074346.t1 MTR_4g080590 40.952 315 167 10 88 398 152 451 4.06e-50 175
MS.gene074346.t1 MTR_7g023330 40.426 282 152 7 122 399 127 396 9.73e-49 170
MS.gene074346.t1 MTR_7g023310 42.157 306 160 8 97 398 164 456 2.10e-46 166
MS.gene074346.t1 MTR_5g039950 39.032 310 146 11 95 399 149 420 9.71e-46 163
MS.gene074346.t1 MTR_4g130200 36.957 322 158 9 80 399 114 392 4.72e-42 152
MS.gene074346.t1 MTR_4g080807 42.063 252 131 6 144 392 84 323 2.26e-38 143
MS.gene074346.t1 MTR_7g039630 41.204 216 121 4 95 309 131 341 1.10e-36 137
MS.gene074346.t1 MTR_5g039970 46.296 162 83 3 95 256 159 316 1.26e-32 125
MS.gene074346.t1 MTR_2g102420 72.289 83 22 1 226 308 7 88 9.32e-32 116
MS.gene074346.t1 MTR_4g080590 41.553 219 114 8 88 304 152 358 1.11e-30 121
MS.gene074346.t1 MTR_4g081030 39.378 193 109 5 97 289 149 333 1.08e-24 104
MS.gene074346.t1 MTR_5g012840 30.065 153 104 3 219 369 140 291 3.00e-11 64.3
MS.gene074346.t1 MTR_8g058965 23.919 347 206 12 84 403 145 460 4.08e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074346.t1 AT1G69630 24.771 327 222 10 52 365 104 419 1.00e-13 72.8
MS.gene074346.t1 AT5G44950 25.368 272 181 11 104 367 150 407 1.94e-11 65.9
MS.gene074346.t1 AT2G26030 25.182 274 181 10 104 363 148 411 2.49e-11 65.5

Find 91 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCTTCCGTACCTTATTT+TGG 0.153718 2.2:+6965450 MS.gene074346:CDS
GTCATTCATATCCAAGAATT+TGG 0.217841 2.2:-6966981 None:intergenic
ATGTTGTTGCTCATCTTTCT+AGG 0.231071 2.2:-6965409 None:intergenic
AAGTTGTGATATTAAGTTTC+GGG 0.259830 2.2:+6967225 MS.gene074346:CDS
TGCGTTGGACAAGTCCATTC+AGG 0.264742 2.2:-6965307 None:intergenic
TAGAGACATCATGACAATTT+AGG 0.267796 2.2:-6966257 None:intergenic
AATGTTGGACAAGTCCATTC+AGG 0.269048 2.2:-6965355 None:intergenic
AAAACAAGAGCTTCCAGTTT+AGG 0.288927 2.2:-6966849 None:intergenic
TCATGACAATTTAGGCAATA+AGG 0.289611 2.2:-6966249 None:intergenic
ACATGTTTCCTCTCCTTATT+CGG 0.296449 2.2:+6966431 MS.gene074346:CDS
TTCAATAAATGCATCAACTA+TGG 0.299409 2.2:-6966373 None:intergenic
TTAGGCAGTTACCAAATTCT+TGG 0.300973 2.2:+6966970 MS.gene074346:intron
CTCAGTAGCAGAACCGAATA+AGG 0.317108 2.2:-6966444 None:intergenic
GACACATCTTTGTCTGGCTT+TGG 0.323841 2.2:+6966776 MS.gene074346:CDS
AAAATGACGAATAAGTTATC+TGG 0.332436 2.2:-6967138 None:intergenic
CAATTTGACACATCTTTGTC+TGG 0.334586 2.2:+6966770 MS.gene074346:CDS
TCTCCTAAGGTGTCCTAAAC+TGG 0.335552 2.2:+6966836 MS.gene074346:CDS
GTTAACAATGATTAATTGTA+TGG 0.340525 2.2:-6966340 None:intergenic
CGGAAGATGGTGGACATCTT+TGG 0.343611 2.2:-6965437 None:intergenic
CTAGGTCTCATGTTCAAATC+TGG 0.352532 2.2:-6965391 None:intergenic
TGACTTTGAACTATTGCTAT+TGG 0.352952 2.2:+6966163 MS.gene074346:CDS
ATGCCTGACTGCCCAAAATA+AGG 0.354939 2.2:-6965462 None:intergenic
GGGTTGCTCCGATTTCGATT+AGG 0.394020 2.2:-6965285 None:intergenic
CTTCCAGTTTAGGACACCTT+AGG 0.395657 2.2:-6966839 None:intergenic
GGGTTGCTCCGACTTCGATT+AGG 0.400909 2.2:-6965333 None:intergenic
TGTTGCATTAAATAAGTAAC+TGG 0.402018 2.2:-6966411 None:intergenic
CATGACAATTTAGGCAATAA+GGG 0.412813 2.2:-6966248 None:intergenic
TGAAAGATTTAAAGTCTTGA+GGG 0.433468 2.2:-6966070 None:intergenic
GAAGTTGTGATATTAAGTTT+CGG 0.434171 2.2:+6967224 MS.gene074346:CDS
AAAGTCAAATCTTGTAGGAT+AGG 0.446206 2.2:-6966147 None:intergenic
CCAAAATAAGGTACGGAAGA+TGG 0.449715 2.2:-6965450 None:intergenic
CAGCAGGACCTAATCGAAAT+CGG 0.461020 2.2:+6965277 MS.gene074346:intron
CTTCACATTTCAATATATGA+TGG 0.465433 2.2:+6967052 MS.gene074346:CDS
GCGTTGGACAAGTCCATTCA+GGG 0.472108 2.2:-6965306 None:intergenic
CAATGAATCACCACTCGAAA+AGG 0.474855 2.2:+6965492 MS.gene074346:CDS
GATTTAAAGTCTTGAGGGTA+GGG 0.478769 2.2:-6966065 None:intergenic
ACAATGATTAATTGTATGGT+TGG 0.481035 2.2:-6966336 None:intergenic
GGTGATAACAATTCAAATGT+TGG 0.489871 2.2:-6965370 None:intergenic
AATTGACTTGTCACTTTCAA+AGG 0.490975 2.2:-6966100 None:intergenic
AAATCGGAGCAACCCCTGAA+TGG 0.496246 2.2:+6965293 MS.gene074346:CDS
TTTACTCTATTTATTCCTAC+CGG 0.498942 2.2:+6966033 MS.gene074346:CDS
ATGTTGGACAAGTCCATTCA+GGG 0.505110 2.2:-6965354 None:intergenic
AAGTCAAATCTTGTAGGATA+GGG 0.506416 2.2:-6966146 None:intergenic
AAACTATCGTTGCAGCTTGG+TGG 0.507148 2.2:+6966009 MS.gene074346:intron
ATGAAAGATTTAAAGTCTTG+AGG 0.508421 2.2:-6966071 None:intergenic
GATTTGAAACAAGGAGGCAC+TGG 0.509695 2.2:-6967016 None:intergenic
AAGTCGGAGCAACCCCTGAA+TGG 0.512678 2.2:+6965341 MS.gene074346:CDS
AGTTCAAAGTCAAATCTTGT+AGG 0.513281 2.2:-6966152 None:intergenic
TGTGTCAAATTGTGGAACTC+AGG 0.519595 2.2:-6966759 None:intergenic
CATTAATGGAATTTCTCCTA+AGG 0.519925 2.2:+6966823 MS.gene074346:CDS
GACAAAGATGTGTCAAATTG+TGG 0.520664 2.2:-6966767 None:intergenic
CAAGAACCAACTTGAAGGCA+TGG 0.525290 2.2:+6967201 MS.gene074346:CDS
GATGTCAAGAACCAACTTGA+AGG 0.529305 2.2:+6967196 MS.gene074346:CDS
TGCATCAACTATGGAAGGTG+GGG 0.531725 2.2:-6966364 None:intergenic
AGATTTAAAGTCTTGAGGGT+AGG 0.534400 2.2:-6966066 None:intergenic
TTACAAGCATTTCATGAACC+TGG 0.536040 2.2:+6967171 MS.gene074346:CDS
AACTTCCCATGCCTTCAAGT+TGG 0.538686 2.2:-6967207 None:intergenic
ATATATGATGGCTCTGATTG+TGG 0.547845 2.2:+6967064 MS.gene074346:CDS
CCATTGCTACTTCCACATTG+AGG 0.551452 2.2:+6966205 MS.gene074346:CDS
ATGCATCAACTATGGAAGGT+GGG 0.554990 2.2:-6966365 None:intergenic
CAAGTCTCTTACACTATCAA+AGG 0.557218 2.2:+6966482 MS.gene074346:CDS
GAGGGTAGGGAATCGAATAC+CGG 0.562885 2.2:-6966052 None:intergenic
TGTGGAACTCAGGAAGGAGA+TGG 0.566882 2.2:-6966749 None:intergenic
ATAAATGCATCAACTATGGA+AGG 0.567181 2.2:-6966369 None:intergenic
GTTGGTTCTTGACATCCGCC+AGG 0.572747 2.2:-6967189 None:intergenic
GCAATAAGGGTCAGAACGGA+TGG 0.579037 2.2:-6966235 None:intergenic
ACTTCGATTAGGTCCTGCGT+TGG 0.583112 2.2:-6965322 None:intergenic
GCATCAACTATGGAAGGTGG+GGG 0.584437 2.2:-6966363 None:intergenic
TCAAATTGTGGAACTCAGGA+AGG 0.589398 2.2:-6966755 None:intergenic
AAGAACCAACTTGAAGGCAT+GGG 0.590199 2.2:+6967202 MS.gene074346:CDS
AATGCATCAACTATGGAAGG+TGG 0.592508 2.2:-6966366 None:intergenic
TTGAGAGAAGATTTGAAACA+AGG 0.592992 2.2:-6967025 None:intergenic
CCTCAATGTGGAAGTAGCAA+TGG 0.606375 2.2:-6966205 None:intergenic
TGACTGCCCAAAATAAGGTA+CGG 0.613063 2.2:-6965457 None:intergenic
AGATGATCAATTACATAGAG+AGG 0.617594 2.2:-6966726 None:intergenic
AGGAGGCACTGGAATTAATG+TGG 0.623391 2.2:-6967005 None:intergenic
GCATTAAATAAGTAACTGGA+AGG 0.627735 2.2:-6966407 None:intergenic
TGAATGGACTTGTCCAACGC+AGG 0.629027 2.2:+6965309 MS.gene074346:CDS
TATTCGGTTCTGCTACTGAG+TGG 0.635807 2.2:+6966447 MS.gene074346:CDS
TTAGGCAATAAGGGTCAGAA+CGG 0.640535 2.2:-6966239 None:intergenic
AAATAAGGTACGGAAGATGG+TGG 0.647688 2.2:-6965447 None:intergenic
TAGCAGAACCGAATAAGGAG+AGG 0.651719 2.2:-6966439 None:intergenic
CGTTGGACAAGTCCATTCAG+GGG 0.656653 2.2:-6965305 None:intergenic
ACGCAGGACCTAATCGAAGT+CGG 0.658399 2.2:+6965325 MS.gene074346:CDS
AGAGAAGATTTGAAACAAGG+AGG 0.665402 2.2:-6967022 None:intergenic
CAAGCATTTCATGAACCTGG+CGG 0.671103 2.2:+6967174 MS.gene074346:CDS
CATCAACTATGGAAGGTGGG+GGG 0.675428 2.2:-6966362 None:intergenic
TAGAAAGATGAGCAACAACA+TGG 0.677619 2.2:+6965411 MS.gene074346:CDS
GTAGGGAATCGAATACCGGT+AGG 0.681544 2.2:-6966048 None:intergenic
GATGGTCAAAATCCTCAATG+TGG 0.685889 2.2:-6966217 None:intergenic
TGTTGGACAAGTCCATTCAG+GGG 0.690836 2.2:-6965353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATGATAATATTGTT+TGG + chr2.2:6965020-6965039 MS.gene074346:intron 15.0%
!! TTGAAATATTAATAGAGTTA+GGG + chr2.2:6964890-6964909 MS.gene074346:intron 15.0%
!!! TTGTTAATTGATTCTTATTT+AGG + chr2.2:6966952-6966971 MS.gene074346:intron 15.0%
!!! TTTGAAATATTAATAGAGTT+AGG + chr2.2:6964889-6964908 MS.gene074346:intron 15.0%
!! AAAACTCATTCAAATTAAAG+GGG - chr2.2:6964649-6964668 None:intergenic 20.0%
!! ATATGATAATATTGTTTGGA+AGG + chr2.2:6965024-6965043 MS.gene074346:intron 20.0%
!! CAAAACTCATTCAAATTAAA+GGG - chr2.2:6964650-6964669 None:intergenic 20.0%
!! GAAACAAAAATAAATTTGCA+TGG - chr2.2:6966693-6966712 None:intergenic 20.0%
!! GTTAACAATGATTAATTGTA+TGG - chr2.2:6966343-6966362 None:intergenic 20.0%
!! TGAAGATGAAGAAAAAAAAA+AGG - chr2.2:6966600-6966619 None:intergenic 20.0%
!! TGTGTATAATATAATGTTCA+GGG + chr2.2:6966565-6966584 MS.gene074346:intron 20.0%
!! TTGTGTATAATATAATGTTC+AGG + chr2.2:6966564-6966583 MS.gene074346:intron 20.0%
!!! AAACTTTTGATAATATTGAG+AGG - chr2.2:6964790-6964809 None:intergenic 20.0%
!!! AACTTTTGATAATATTGAGA+GGG - chr2.2:6964789-6964808 None:intergenic 20.0%
!!! AATTGAACAATTTTTTTCTG+AGG + chr2.2:6966119-6966138 MS.gene074346:CDS 20.0%
!!! ATCTAAAACAAAAGTATTAC+AGG + chr2.2:6965149-6965168 MS.gene074346:intron 20.0%
!!! ATTGAACAATTTTTTTCTGA+GGG + chr2.2:6966120-6966139 MS.gene074346:CDS 20.0%
!!! TCTAAAACAAAAGTATTACA+GGG + chr2.2:6965150-6965169 MS.gene074346:intron 20.0%
!!! TTTAAAGTTTGATATCAAGA+AGG + chr2.2:6965091-6965110 MS.gene074346:intron 20.0%
! AAAAGTTGTAATTTGAACGA+AGG - chr2.2:6965181-6965200 None:intergenic 25.0%
! AAAATGACGAATAAGTTATC+TGG - chr2.2:6967141-6967160 None:intergenic 25.0%
! AAGTTGTGATATTAAGTTTC+GGG + chr2.2:6967225-6967244 MS.gene074346:CDS 25.0%
! AATATGGTGAAGAATGTTAT+CGG - chr2.2:6965575-6965594 None:intergenic 25.0%
! AATGAAGATGATGAGAAAAA+AGG - chr2.2:6966529-6966548 None:intergenic 25.0%
! ACAATGATTAATTGTATGGT+TGG - chr2.2:6966339-6966358 None:intergenic 25.0%
! AGAATCAATTAACAAGTCAA+TGG - chr2.2:6966947-6966966 None:intergenic 25.0%
! AGAATTTGCAAATAACAAGT+TGG + chr2.2:6965125-6965144 MS.gene074346:intron 25.0%
! CCAAAACTCATTCAAATTAA+AGG - chr2.2:6964651-6964670 None:intergenic 25.0%
! CTTCACATTTCAATATATGA+TGG + chr2.2:6967052-6967071 MS.gene074346:CDS 25.0%
! CTTCAGTAGAAAAACATTAA+TGG + chr2.2:6966809-6966828 MS.gene074346:CDS 25.0%
! CTTGGAAATATTAATAGAGT+CGG - chr2.2:6964764-6964783 None:intergenic 25.0%
! GAAGTTGTGATATTAAGTTT+CGG + chr2.2:6967224-6967243 MS.gene074346:CDS 25.0%
! GAGATTATAAGAAGGATATA+AGG - chr2.2:6966887-6966906 None:intergenic 25.0%
! TACAAAGATTGGGATAAAAT+CGG - chr2.2:6964722-6964741 None:intergenic 25.0%
! TGTTGCATTAAATAAGTAAC+TGG - chr2.2:6966414-6966433 None:intergenic 25.0%
! TTCAATAAATGCATCAACTA+TGG - chr2.2:6966376-6966395 None:intergenic 25.0%
! TTGGAAATATTAATAGAGTC+GGG - chr2.2:6964763-6964782 None:intergenic 25.0%
! TTTACTCTATTTATTCCTAC+CGG + chr2.2:6966033-6966052 MS.gene074346:CDS 25.0%
!! AAAAAATGCTAGACTTTTAG+AGG + chr2.2:6967111-6967130 MS.gene074346:CDS 25.0%
!! ATGAAAGATTTAAAGTCTTG+AGG - chr2.2:6966074-6966093 None:intergenic 25.0%
!! ATTCTTTTAACCTAGAAATG+GGG - chr2.2:6966910-6966929 None:intergenic 25.0%
!! CATTCTTTTAACCTAGAAAT+GGG - chr2.2:6966911-6966930 None:intergenic 25.0%
!! TCATTCTTTTAACCTAGAAA+TGG - chr2.2:6966912-6966931 None:intergenic 25.0%
!! TGAAAGATTTAAAGTCTTGA+GGG - chr2.2:6966073-6966092 None:intergenic 25.0%
!!! CCTTTAATTTGAATGAGTTT+TGG + chr2.2:6964648-6964667 MS.gene074346:intron 25.0%
!!! TTGAACAATTTTTTTCTGAG+GGG + chr2.2:6966121-6966140 MS.gene074346:CDS 25.0%
AAAGTCAAATCTTGTAGGAT+AGG - chr2.2:6966150-6966169 None:intergenic 30.0%
AAGTCAAATCTTGTAGGATA+GGG - chr2.2:6966149-6966168 None:intergenic 30.0%
AGATGATCAATTACATAGAG+AGG - chr2.2:6966729-6966748 None:intergenic 30.0%
AGTTCAAAGTCAAATCTTGT+AGG - chr2.2:6966155-6966174 None:intergenic 30.0%
ATAAATGCATCAACTATGGA+AGG - chr2.2:6966372-6966391 None:intergenic 30.0%
ATATGGTGAAGAATGTTATC+GGG - chr2.2:6965574-6965593 None:intergenic 30.0%
ATGTGAAAAACAAAGAGAGA+GGG - chr2.2:6964824-6964843 None:intergenic 30.0%
CAATGAATCATCACTCAAAA+CGG + chr2.2:6965528-6965547 MS.gene074346:intron 30.0%
CATGACAATTTAGGCAATAA+GGG - chr2.2:6966251-6966270 None:intergenic 30.0%
CATTAATGGAATTTCTCCTA+AGG + chr2.2:6966823-6966842 MS.gene074346:CDS 30.0%
GCATTAAATAAGTAACTGGA+AGG - chr2.2:6966410-6966429 None:intergenic 30.0%
GGTGATAACAATTCAAATGT+TGG - chr2.2:6965373-6965392 None:intergenic 30.0%
GGTTTACTCAAAAATCTTAC+AGG - chr2.2:6964698-6964717 None:intergenic 30.0%
GTCATTCATATCCAAGAATT+TGG - chr2.2:6966984-6967003 None:intergenic 30.0%
TACATAGACATGGATCAATT+TGG + chr2.2:6964931-6964950 MS.gene074346:intron 30.0%
TAGAGACATCATGACAATTT+AGG - chr2.2:6966260-6966279 None:intergenic 30.0%
TATCACTTATGCAAAGTTGA+AGG - chr2.2:6965927-6965946 None:intergenic 30.0%
TCAATTAACAAGTCAATGGA+TGG - chr2.2:6966943-6966962 None:intergenic 30.0%
TCATGACAATTTAGGCAATA+AGG - chr2.2:6966252-6966271 None:intergenic 30.0%
TGACTTTGAACTATTGCTAT+TGG + chr2.2:6966163-6966182 MS.gene074346:CDS 30.0%
TGGAGAGAAATGAAAGAATA+TGG - chr2.2:6965591-6965610 None:intergenic 30.0%
! ACTATCAAAGGACACTTTTA+GGG + chr2.2:6966494-6966513 MS.gene074346:CDS 30.0%
! ATAGAGAGGTTTCTAGAAAA+AGG - chr2.2:6966715-6966734 None:intergenic 30.0%
! TTCTTTTAACCTAGAAATGG+GGG - chr2.2:6966909-6966928 None:intergenic 30.0%
! TTGAGAGAAGATTTGAAACA+AGG - chr2.2:6967028-6967047 None:intergenic 30.0%
!! AATTGACTTGTCACTTTCAA+AGG - chr2.2:6966103-6966122 None:intergenic 30.0%
!!! AAATCGGGGTGTTATTTTAA+TGG - chr2.2:6965803-6965822 None:intergenic 30.0%
!!! ACTTATTCGTCATTTTTTCG+AGG + chr2.2:6967145-6967164 MS.gene074346:CDS 30.0%
!!! TTTTGATTTTGAGGATGAGA+AGG - chr2.2:6965703-6965722 None:intergenic 30.0%
AAAACAAGAGCTTCCAGTTT+AGG - chr2.2:6966852-6966871 None:intergenic 35.0%
AAAGATTGGGATAAAATCGG+TGG - chr2.2:6964719-6964738 None:intergenic 35.0%
AAATGGGGGAGATTATAAGA+AGG - chr2.2:6966895-6966914 None:intergenic 35.0%
ACATGTTTCCTCTCCTTATT+CGG + chr2.2:6966431-6966450 MS.gene074346:CDS 35.0%
ACTACTTCACAAATCTAACG+TGG + chr2.2:6965762-6965781 MS.gene074346:intron 35.0%
AGAGTTAGGGACTAATTTGA+AGG + chr2.2:6964903-6964922 MS.gene074346:intron 35.0%
ATAGACATGGATCAATTTGG+TGG + chr2.2:6964934-6964953 MS.gene074346:intron 35.0%
ATGTTGTTGCTCATCTTTCT+AGG - chr2.2:6965412-6965431 None:intergenic 35.0%
ATTGAAGCGATTGAATGTAG+TGG - chr2.2:6964533-6964552 None:intergenic 35.0%
CAAGTCTCTTACACTATCAA+AGG + chr2.2:6966482-6966501 MS.gene074346:CDS 35.0%
CAATTTGACACATCTTTGTC+TGG + chr2.2:6966770-6966789 MS.gene074346:CDS 35.0%
CATGTGAAAAACAAAGAGAG+AGG - chr2.2:6964825-6964844 None:intergenic 35.0%
CTTCCATATTAGCAACAAAG+TGG + chr2.2:6965629-6965648 MS.gene074346:intron 35.0%
GACAAAGATGTGTCAAATTG+TGG - chr2.2:6966770-6966789 None:intergenic 35.0%
GAGAGTGACTTACAAAGATT+GGG - chr2.2:6964732-6964751 None:intergenic 35.0%
GATAATATTGAGAGGGATCT+TGG - chr2.2:6964782-6964801 None:intergenic 35.0%
GTTAGATTTGTGAAGTAGTG+TGG - chr2.2:6965761-6965780 None:intergenic 35.0%
TAGAAAGATGAGCAACAACA+TGG + chr2.2:6965411-6965430 MS.gene074346:CDS 35.0%
TGAGAGTGACTTACAAAGAT+TGG - chr2.2:6964733-6964752 None:intergenic 35.0%
TGAGATGTTGAGAAACTACA+GGG - chr2.2:6965979-6965998 None:intergenic 35.0%
TTACAAGCATTTCATGAACC+TGG + chr2.2:6967171-6967190 MS.gene074346:CDS 35.0%
TTAGGCAGTTACCAAATTCT+TGG + chr2.2:6966970-6966989 MS.gene074346:intron 35.0%
TTATAATCTCCCCCATTTCT+AGG + chr2.2:6966897-6966916 MS.gene074346:intron 35.0%
TTATGCAAAGTTGAAGGTTC+TGG - chr2.2:6965921-6965940 None:intergenic 35.0%
! AGAGAAGATTTGAAACAAGG+AGG - chr2.2:6967025-6967044 None:intergenic 35.0%
! AGATTTAAAGTCTTGAGGGT+AGG - chr2.2:6966069-6966088 None:intergenic 35.0%
! CACTATCAAAGGACACTTTT+AGG + chr2.2:6966493-6966512 MS.gene074346:CDS 35.0%
! GATTTAAAGTCTTGAGGGTA+GGG - chr2.2:6966068-6966087 None:intergenic 35.0%
! GCAACAGCAAATTCTCTTTT+AGG + chr2.2:6965727-6965746 MS.gene074346:intron 35.0%
!! AGATTTTTCACCTTTTCGAG+TGG - chr2.2:6965505-6965524 None:intergenic 35.0%
!! ATATATGATGGCTCTGATTG+TGG + chr2.2:6967064-6967083 MS.gene074346:CDS 35.0%
!!! CATCTTCCGTACCTTATTTT+GGG + chr2.2:6965451-6965470 MS.gene074346:CDS 35.0%
!!! GTTGCTGAGTTTTGATTTTG+AGG - chr2.2:6965712-6965731 None:intergenic 35.0%
AAATAAGGTACGGAAGATGG+TGG - chr2.2:6965450-6965469 None:intergenic 40.0%
AAGGATATAAGGTGTACCAG+AGG - chr2.2:6966876-6966895 None:intergenic 40.0%
AATGCATCAACTATGGAAGG+TGG - chr2.2:6966369-6966388 None:intergenic 40.0%
AATGTTGGACAAGTCCATTC+AGG - chr2.2:6965358-6965377 None:intergenic 40.0%
ACTAAACTATCGTTGCAGCT+TGG + chr2.2:6966006-6966025 MS.gene074346:intron 40.0%
AGAGCAACAGATAGTTGACA+AGG - chr2.2:6965847-6965866 None:intergenic 40.0%
ATGCATCAACTATGGAAGGT+GGG - chr2.2:6966368-6966387 None:intergenic 40.0%
ATGTTGGACAAGTCCATTCA+GGG - chr2.2:6965357-6965376 None:intergenic 40.0%
CAATGAATCACCACTCGAAA+AGG + chr2.2:6965492-6965511 MS.gene074346:CDS 40.0%
CCAAAATAAGGTACGGAAGA+TGG - chr2.2:6965453-6965472 None:intergenic 40.0%
CCATATTAGCAACAAAGTGG+AGG + chr2.2:6965632-6965651 MS.gene074346:intron 40.0%
CCTCCACTTTGTTGCTAATA+TGG - chr2.2:6965635-6965654 None:intergenic 40.0%
CGTGTGCATCACGAAAAAAT+CGG - chr2.2:6965819-6965838 None:intergenic 40.0%
CTAGGTCTCATGTTCAAATC+TGG - chr2.2:6965394-6965413 None:intergenic 40.0%
GAAGGTGACTTACATAGACA+TGG + chr2.2:6964921-6964940 MS.gene074346:intron 40.0%
GATGGTCAAAATCCTCAATG+TGG - chr2.2:6966220-6966239 None:intergenic 40.0%
GATGTCAAGAACCAACTTGA+AGG + chr2.2:6967196-6967215 MS.gene074346:CDS 40.0%
GTGAGATGTTGAGAAACTAC+AGG - chr2.2:6965980-6965999 None:intergenic 40.0%
GTGTGCATCACGAAAAAATC+GGG - chr2.2:6965818-6965837 None:intergenic 40.0%
TACAGGATGTCAAAGATGTC+AGG - chr2.2:6964681-6964700 None:intergenic 40.0%
TCAAATTGTGGAACTCAGGA+AGG - chr2.2:6966758-6966777 None:intergenic 40.0%
TGACTGCCCAAAATAAGGTA+CGG - chr2.2:6965460-6965479 None:intergenic 40.0%
TGCATGGTAAACACAACCAA+AGG - chr2.2:6966677-6966696 None:intergenic 40.0%
TGTGCATCACGAAAAAATCG+GGG - chr2.2:6965817-6965836 None:intergenic 40.0%
TGTGTCAAATTGTGGAACTC+AGG - chr2.2:6966762-6966781 None:intergenic 40.0%
TTAGGCAATAAGGGTCAGAA+CGG - chr2.2:6966242-6966261 None:intergenic 40.0%
! AAGAACCAACTTGAAGGCAT+GGG + chr2.2:6967202-6967221 MS.gene074346:CDS 40.0%
! TCCTGCTGATGATGAACAAT+GGG - chr2.2:6965265-6965284 None:intergenic 40.0%
!! AGTTTTGACAGCATCTTTGG+TGG - chr2.2:6965611-6965630 None:intergenic 40.0%
!! CCATCTTCCGTACCTTATTT+TGG + chr2.2:6965450-6965469 MS.gene074346:CDS 40.0%
!! GGAAGTTTTGACAGCATCTT+TGG - chr2.2:6965614-6965633 None:intergenic 40.0%
!!! GGGGTGTTATTTTAATGGTG+AGG - chr2.2:6965798-6965817 None:intergenic 40.0%
AAACTATCGTTGCAGCTTGG+TGG + chr2.2:6966009-6966028 MS.gene074346:intron 45.0%
AACTTCCCATGCCTTCAAGT+TGG - chr2.2:6967210-6967229 None:intergenic 45.0%
ACTACAGGGTAACACACAAG+TGG - chr2.2:6965965-6965984 None:intergenic 45.0%
ATGCCTGACTGCCCAAAATA+AGG - chr2.2:6965465-6965484 None:intergenic 45.0%
CAAGAACCAACTTGAAGGCA+TGG + chr2.2:6967201-6967220 MS.gene074346:CDS 45.0%
CAAGCATTTCATGAACCTGG+CGG + chr2.2:6967174-6967193 MS.gene074346:CDS 45.0%
CAGCAGGACCTAATCGAAAT+CGG + chr2.2:6965277-6965296 MS.gene074346:intron 45.0%
CCTCAATGTGGAAGTAGCAA+TGG - chr2.2:6966208-6966227 None:intergenic 45.0%
CTCAGTAGCAGAACCGAATA+AGG - chr2.2:6966447-6966466 None:intergenic 45.0%
TAGCAGAACCGAATAAGGAG+AGG - chr2.2:6966442-6966461 None:intergenic 45.0%
TATTCGGTTCTGCTACTGAG+TGG + chr2.2:6966447-6966466 MS.gene074346:CDS 45.0%
TCCCATTGTTCATCATCAGC+AGG + chr2.2:6965261-6965280 MS.gene074346:intron 45.0%
TGCATCAACTATGGAAGGTG+GGG - chr2.2:6966367-6966386 None:intergenic 45.0%
TGTTGGACAAGTCCATTCAG+GGG - chr2.2:6965356-6965375 None:intergenic 45.0%
TTGACGCACAATGTTGCCTT+TGG + chr2.2:6966658-6966677 MS.gene074346:intron 45.0%
! CCATTGCTACTTCCACATTG+AGG + chr2.2:6966205-6966224 MS.gene074346:CDS 45.0%
! CTTCCAGTTTAGGACACCTT+AGG - chr2.2:6966842-6966861 None:intergenic 45.0%
! GACACATCTTTGTCTGGCTT+TGG + chr2.2:6966776-6966795 MS.gene074346:CDS 45.0%
! GATTTGAAACAAGGAGGCAC+TGG - chr2.2:6967019-6967038 None:intergenic 45.0%
! GTCCTGCTGATGATGAACAA+TGG - chr2.2:6965266-6965285 None:intergenic 45.0%
! TCTCCTAAGGTGTCCTAAAC+TGG + chr2.2:6966836-6966855 MS.gene074346:CDS 45.0%
!! AGGAGGCACTGGAATTAATG+TGG - chr2.2:6967008-6967027 None:intergenic 45.0%
!! CAACAAAGTGGAGGTACTTG+TGG + chr2.2:6965641-6965660 MS.gene074346:intron 45.0%
!! GTTGAAGGTTCTGGACTTTG+CGG - chr2.2:6965912-6965931 None:intergenic 45.0%
!! TTGAAGGTTCTGGACTTTGC+GGG - chr2.2:6965911-6965930 None:intergenic 45.0%
!!! GGAAGCTCTTGTTTTACCTC+TGG + chr2.2:6966857-6966876 MS.gene074346:CDS 45.0%
!!! GTACCTTATTTTGGGCAGTC+AGG + chr2.2:6965459-6965478 MS.gene074346:CDS 45.0%
AAATCGGAGCAACCCCTGAA+TGG + chr2.2:6965293-6965312 MS.gene074346:CDS 50.0%
ACGCAGGACCTAATCGAAGT+CGG + chr2.2:6965325-6965344 MS.gene074346:CDS 50.0%
ACTTCGATTAGGTCCTGCGT+TGG - chr2.2:6965325-6965344 None:intergenic 50.0%
CATCAACTATGGAAGGTGGG+GGG - chr2.2:6966365-6966384 None:intergenic 50.0%
CGTTGGACAAGTCCATTCAG+GGG - chr2.2:6965308-6965327 None:intergenic 50.0%
GAGGGTAGGGAATCGAATAC+CGG - chr2.2:6966055-6966074 None:intergenic 50.0%
GCAATAAGGGTCAGAACGGA+TGG - chr2.2:6966238-6966257 None:intergenic 50.0%
GCATCAACTATGGAAGGTGG+GGG - chr2.2:6966366-6966385 None:intergenic 50.0%
GCGTTGGACAAGTCCATTCA+GGG - chr2.2:6965309-6965328 None:intergenic 50.0%
GGGTTGCTCCGATTTCGATT+AGG - chr2.2:6965288-6965307 None:intergenic 50.0%
GTAGGGAATCGAATACCGGT+AGG - chr2.2:6966051-6966070 None:intergenic 50.0%
TGCGTTGGACAAGTCCATTC+AGG - chr2.2:6965310-6965329 None:intergenic 50.0%
TGTGGAACTCAGGAAGGAGA+TGG - chr2.2:6966752-6966771 None:intergenic 50.0%
! TGAATGGACTTGTCCAACGC+AGG + chr2.2:6965309-6965328 MS.gene074346:CDS 50.0%
!! CGGAAGATGGTGGACATCTT+TGG - chr2.2:6965440-6965459 None:intergenic 50.0%
AAGTCGGAGCAACCCCTGAA+TGG + chr2.2:6965341-6965360 MS.gene074346:CDS 55.0%
AATCAGCAGCAGCAGCAGCA+AGG + chr2.2:6964494-6964513 MS.gene074346:CDS 55.0%
GGGTTGCTCCGACTTCGATT+AGG - chr2.2:6965336-6965355 None:intergenic 55.0%
! GTTGGTTCTTGACATCCGCC+AGG - chr2.2:6967192-6967211 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 6964471 6967264 6964471 ID=MS.gene074346
chr2.2 mRNA 6964471 6967264 6964471 ID=MS.gene074346.t1;Parent=MS.gene074346
chr2.2 exon 6964471 6964515 6964471 ID=MS.gene074346.t1.exon1;Parent=MS.gene074346.t1
chr2.2 CDS 6964471 6964515 6964471 ID=cds.MS.gene074346.t1;Parent=MS.gene074346.t1
chr2.2 exon 6965283 6965513 6965283 ID=MS.gene074346.t1.exon2;Parent=MS.gene074346.t1
chr2.2 CDS 6965283 6965513 6965283 ID=cds.MS.gene074346.t1;Parent=MS.gene074346.t1
chr2.2 exon 6966024 6966515 6966024 ID=MS.gene074346.t1.exon3;Parent=MS.gene074346.t1
chr2.2 CDS 6966024 6966515 6966024 ID=cds.MS.gene074346.t1;Parent=MS.gene074346.t1
chr2.2 exon 6966723 6966878 6966723 ID=MS.gene074346.t1.exon4;Parent=MS.gene074346.t1
chr2.2 CDS 6966723 6966878 6966723 ID=cds.MS.gene074346.t1;Parent=MS.gene074346.t1
chr2.2 exon 6966974 6967264 6966974 ID=MS.gene074346.t1.exon5;Parent=MS.gene074346.t1
chr2.2 CDS 6966974 6967264 6966974 ID=cds.MS.gene074346.t1;Parent=MS.gene074346.t1
Gene Sequence

>MS.gene074346

ATGTTTAAAAAGAAGAAGATGGAAATCAGCAGCAGCAGCAGCAAGGTATGATTGAGTTTCCACTACATTCAATCGCTTCAATTCTGAATAAGTGTTGTTATATTTTTTTGAAATTAAGAACAGTTATTTAATGTTTCTATTACTAGCAAATATTTCTAAGTTTAAATAGTATTTACCCCTTTAATTTGAATGAGTTTTGGTTTACATCCTGACATCTTTGACATCCTGTAAGATTTTTGAGTAAACCACCGATTTTATCCCAATCTTTGTAAGTCACTCTCAAATTAGTCCCGACTCTATTAATATTTCCAAGATCCCTCTCAATATTATCAAAAGTTTCTCAATTCGATCCCTCTCTCTTTGTTTTTCACATGACGAGACACTTAATTGAGAAACTTTTGACAAAGACAGAGACTATTTTGAAATATTAATAGAGTTAGGGACTAATTTGAAGGTGACTTACATAGACATGGATCAATTTGGTGGTTTACTCATTATTTTTTAGATTCTAACGTTGTACTTTAGAGATCTTTATGAAAGTTGAGCGTACAAAATATGATAATATTGTTTGGAAGGTAAAATAAAATTCGCTCAAATTACATAGACGAAAGTATGTTAATTTTAAAGTTTGATATCAAGAAGGTTTAAAAGAGAAGAATTTGCAAATAACAAGTTGGAATCTAAAACAAAAGTATTACAGGGATAAGCCTTCGTTCAAATTACAACTTTTATTTTTATCATTGTTATTATATATTTATTTTTAAAACTTAGCGTTAAGCTGAGTGACTAATCCCATTGTTCATCATCAGCAGGACCTAATCGAAATCGGAGCAACCCCTGAATGGACTTGTCCAACGCAGGACCTAATCGAAGTCGGAGCAACCCCTGAATGGACTTGTCCAACATTTGAATTGTTATCACCAGATTTGAACATGAGACCTAGAAAGATGAGCAACAACATGGTGTCCAAAGATGTCCACCATCTTCCGTACCTTATTTTGGGCAGTCAGGCATATCTCATCAATGAATCACCACTCGAAAAGGTGAAAAATCTCATCAATGAATCATCACTCAAAACGGTGAAAAATATTAGTGACTTACCCGATAACATTCTTCACCATATTCTTTCATTTCTCTCCACCAAAGATGCTGTCAAAACTTCCATATTAGCAACAAAGTGGAGGTACTTGTGGACTCAATTATCTGTCTTTGATTTTCATATTATTAGTCCTTCTCATCCTCAAAATCAAAACTCAGCAACAGCAAATTCTCTTTTAGGTATAGTTGCCACACTACTTCACAAATCTAACGTGGAAATACAAAGCCTCACCATTAAAATAACACCCCGATTTTTTCGTGATGCACACGATCATCCTTGTCAACTATCTGTTGCTCTTGATGCACGCAAACTTACTTCTTTACTATCTTCTCTACTCACCCGCAAAGTCCAGAACCTTCAACTTTGCATAAGTGATACAAAATATCGAAATACCACTTGTGTGTTACCCTGTAGTTTCTCAACATCTCACTCATTGACTAAACTATCGTTGCAGCTTGGTGGCTTTACTCTATTTATTCCTACCGGTATTCGATTCCCTACCCTCAAGACTTTAAATCTTTCATATGCTACCTTTGAAAGTGACAAGTCAATTGAACAATTTTTTTCTGAGGGGTGCCCTATCCTACAAGATTTGACTTTGAACTATTGCTATTGGTTGTACATCAAGCAGATCACCATTGCTACTTCCACATTGAGGATTTTGACCATCCGTTCTGACCCTTATTGCCTAAATTGTCATGATGTCTCTAATTTCTCAGTCAAGATTGATGCTGTCAATCTTGTATCTTTAGCTTGCACAAGTCGTCCAACCATACAATTAATCATTGTTAACCCCCCACCTTCCATAGTTGATGCATTTATTGAATTTGACATACACCTTCCAGTTACTTATTTAATGCAACATGTTTCCTCTCCTTATTCGGTTCTGCTACTGAGTGGACTTGCAAGTGTCAAGTCTCTTACACTATCAAAGGACACTTTTAGGGTATGTATTACCTTTTTTCTCATCATCTTCATTTAATCTTTTTAAATATTGTGTATAATATAATGTTCAGGGTATGTATTGCCTTTTTTTTTTCTTCATCTTCATTTTATCTTTTTAAATATTGTGTATAAAATGATGTGTTTTGACGCACAATGTTGCCTTTGGTTGTGTTTACCATGCAAATTTATTTTTGTTTCCTTTTTCTAGAAACCTCTCTATGTAATTGATCATCTCCATCTCCTTCCTGAGTTCCACAATTTGACACATCTTTGTCTGGCTTTGGAGATTGACAACTTCAGTAGAAAAACATTAATGGAATTTCTCCTAAGGTGTCCTAAACTGGAAGCTCTTGTTTTACCTCTGGTACACCTTATATCCTTCTTATAATCTCCCCCATTTCTAGGTTAAAAGAATGATATTATTTCCATCCATTGACTTGTTAATTGATTCTTATTTAGGCAGTTACCAAATTCTTGGATATGAATGACTCCACATTAATTCCAGTGCCTCCTTGTTTCAAATCTTCTCTCAAGATGCTTCACATTTCAATATATGATGGCTCTGATTGTGGAATTCGATTCATTGAGTTTATTTTAAAAAATGCTAGACTTTTAGAGGAGATCCAGATAACTTATTCGTCATTTTTTCGAGGTTTTTACAAGCATTTCATGAACCTGGCGGATGTCAAGAACCAACTTGAAGGCATGGGAAGTTGTGATATTAAGTTTCGGGAAAGAATTTCTTTTTAG
Protein sequence

>MS.gene074346.t1

MFKKKKMEISSSSSKDLIEIGATPEWTCPTQDLIEVGATPEWTCPTFELLSPDLNMRPRKMSNNMVSKDVHHLPYLILGSQAYLINESPLEKLGGFTLFIPTGIRFPTLKTLNLSYATFESDKSIEQFFSEGCPILQDLTLNYCYWLYIKQITIATSTLRILTIRSDPYCLNCHDVSNFSVKIDAVNLVSLACTSRPTIQLIIVNPPPSIVDAFIEFDIHLPVTYLMQHVSSPYSVLLLSGLASVKSLTLSKDTFRKPLYVIDHLHLLPEFHNLTHLCLALEIDNFSRKTLMEFLLRCPKLEALVLPLAVTKFLDMNDSTLIPVPPCFKSSLKMLHISIYDGSDCGIRFIEFILKNARLLEEIQITYSSFFRGFYKHFMNLADVKNQLEGMGSCDIKFRERISF