Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73831.t1 | XP_003607639.2 | 87.2 | 383 | 39 | 1 | 1 | 373 | 74 | 456 | 1.70E-182 | 648.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73831.t1 | Q9C8Y7 | 24.4 | 295 | 208 | 9 | 63 | 347 | 149 | 438 | 7.1e-12 | 73.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73831.t1 | G7JDU1 | 87.2 | 383 | 39 | 1 | 1 | 373 | 74 | 456 | 1.2e-182 | 648.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene73831 | 0.813187 | 2.91E-51 | -1.69E-46 |
MS.gene049825 | MS.gene73831 | 0.801065 | 1.07E-48 | -1.69E-46 |
MS.gene049873 | MS.gene73831 | 0.805091 | 1.58E-49 | -1.69E-46 |
MS.gene052519 | MS.gene73831 | 0.826373 | 2.81E-54 | -1.69E-46 |
MS.gene052582 | MS.gene73831 | 0.829462 | 5.08E-55 | -1.69E-46 |
MS.gene052584 | MS.gene73831 | 0.839794 | 1.28E-57 | -1.69E-46 |
MS.gene052685 | MS.gene73831 | 0.805435 | 1.34E-49 | -1.69E-46 |
MS.gene053226 | MS.gene73831 | 0.817045 | 4.04E-52 | -1.69E-46 |
MS.gene05365 | MS.gene73831 | 0.809096 | 2.24E-50 | -1.69E-46 |
MS.gene05423 | MS.gene73831 | 0.818356 | 2.05E-52 | -1.69E-46 |
MS.gene054651 | MS.gene73831 | 0.821547 | 3.81E-53 | -1.69E-46 |
MS.gene054775 | MS.gene73831 | 0.801632 | 8.22E-49 | -1.69E-46 |
MS.gene054991 | MS.gene73831 | 0.807019 | 6.20E-50 | -1.69E-46 |
MS.gene055586 | MS.gene73831 | 0.825479 | 4.58E-54 | -1.69E-46 |
MS.gene055694 | MS.gene73831 | 0.820687 | 6.01E-53 | -1.69E-46 |
MS.gene055778 | MS.gene73831 | 0.80319 | 3.92E-49 | -1.69E-46 |
MS.gene056174 | MS.gene73831 | 0.802215 | 6.24E-49 | -1.69E-46 |
MS.gene056854 | MS.gene73831 | 0.810412 | 1.17E-50 | -1.69E-46 |
MS.gene05686 | MS.gene73831 | 0.805591 | 1.24E-49 | -1.69E-46 |
MS.gene057208 | MS.gene73831 | 0.808806 | 2.58E-50 | -1.69E-46 |
MS.gene058037 | MS.gene73831 | 0.814746 | 1.32E-51 | -1.69E-46 |
MS.gene058625 | MS.gene73831 | 0.811136 | 8.14E-51 | -1.69E-46 |
MS.gene059625 | MS.gene73831 | 0.812389 | 4.35E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73831.t1 | MTR_4g080590 | 87.206 | 383 | 39 | 1 | 1 | 373 | 74 | 456 | 0.0 | 656 |
MS.gene73831.t1 | MTR_4g080590 | 84.083 | 289 | 36 | 1 | 1 | 279 | 74 | 362 | 2.50e-165 | 467 |
MS.gene73831.t1 | MTR_4g080787 | 42.480 | 379 | 200 | 6 | 9 | 373 | 94 | 468 | 1.25e-79 | 253 |
MS.gene73831.t1 | MTR_4g130200 | 44.959 | 367 | 151 | 9 | 16 | 365 | 56 | 388 | 2.22e-78 | 246 |
MS.gene73831.t1 | MTR_3g048290 | 41.582 | 392 | 209 | 8 | 1 | 373 | 79 | 469 | 8.41e-73 | 234 |
MS.gene73831.t1 | MTR_4g080773 | 41.667 | 372 | 202 | 7 | 9 | 366 | 94 | 464 | 8.20e-72 | 232 |
MS.gene73831.t1 | MTR_4g080773 | 41.667 | 372 | 202 | 7 | 9 | 366 | 94 | 464 | 1.41e-71 | 232 |
MS.gene73831.t1 | MTR_5g039950 | 40.162 | 371 | 181 | 7 | 15 | 369 | 75 | 420 | 5.05e-65 | 213 |
MS.gene73831.t1 | MTR_4g080807 | 40.922 | 347 | 178 | 6 | 17 | 360 | 1 | 323 | 7.92e-60 | 199 |
MS.gene73831.t1 | MTR_7g023310 | 39.062 | 384 | 211 | 8 | 2 | 368 | 79 | 456 | 4.13e-58 | 196 |
MS.gene73831.t1 | MTR_7g023330 | 37.433 | 374 | 174 | 9 | 3 | 369 | 76 | 396 | 2.27e-57 | 192 |
MS.gene73831.t1 | MTR_7g039630 | 41.414 | 297 | 153 | 7 | 1 | 277 | 43 | 338 | 1.37e-49 | 170 |
MS.gene73831.t1 | MTR_5g039970 | 44.130 | 247 | 124 | 3 | 4 | 236 | 77 | 323 | 6.36e-43 | 152 |
MS.gene73831.t1 | MTR_4g081030 | 33.762 | 311 | 163 | 9 | 9 | 288 | 68 | 366 | 2.75e-26 | 108 |
MS.gene73831.t1 | MTR_2g094750 | 33.951 | 324 | 154 | 13 | 1 | 275 | 145 | 457 | 1.02e-23 | 102 |
MS.gene73831.t1 | MTR_2g072530 | 24.054 | 370 | 253 | 11 | 9 | 359 | 74 | 434 | 3.82e-13 | 70.9 |
MS.gene73831.t1 | MTR_7g026500 | 34.074 | 135 | 78 | 6 | 224 | 352 | 251 | 380 | 4.11e-12 | 67.4 |
MS.gene73831.t1 | MTR_5g005690 | 28.094 | 299 | 163 | 7 | 81 | 336 | 162 | 451 | 4.55e-12 | 67.4 |
MS.gene73831.t1 | MTR_5g054920 | 33.621 | 116 | 71 | 4 | 241 | 351 | 78 | 192 | 4.64e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73831.t1 | AT3G58880 | 28.269 | 283 | 173 | 9 | 73 | 337 | 148 | 418 | 3.33e-13 | 70.9 |
MS.gene73831.t1 | AT5G22670 | 26.740 | 273 | 168 | 9 | 83 | 336 | 151 | 410 | 7.71e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGAATTTCTTGACATTTA+TGG | 0.106011 | 4.2:+29466045 | MS.gene73831:CDS |
CAACATGCAGTTCGTTATTT+TGG | 0.110661 | 4.2:-29465205 | None:intergenic |
ACTAAGTTGGATATAGTATT+TGG | 0.170742 | 4.2:+29464819 | MS.gene73831:intron |
TAGAATTTCTTGACATTTAT+GGG | 0.257267 | 4.2:+29466046 | MS.gene73831:CDS |
AAACTTCACCAATCTGATTT+CGG | 0.294077 | 4.2:-29466277 | None:intergenic |
GTTGATGCATATATTGATCT+TGG | 0.309181 | 4.2:+29465170 | MS.gene73831:CDS |
TAGAAAATGTCACGTTCTTA+AGG | 0.323129 | 4.2:+29466304 | MS.gene73831:CDS |
ATGTCAAGAAATTCTAGTTT+AGG | 0.324682 | 4.2:-29466039 | None:intergenic |
GCTATCAGATGAAACTATTC+AGG | 0.345809 | 4.2:+29465280 | MS.gene73831:CDS |
CCTGTATCAACAATAGTTGA+TGG | 0.364163 | 4.2:-29464676 | None:intergenic |
CCATCAACTATTGTTGATAC+AGG | 0.366559 | 4.2:+29464676 | MS.gene73831:CDS |
ATTCTAGTTTAGGACTCTTT+CGG | 0.366674 | 4.2:-29466029 | None:intergenic |
TTAGGGATCTTACTTATCCT+TGG | 0.372669 | 4.2:+29466164 | MS.gene73831:intron |
ATCAATATATGCATCAACTA+TGG | 0.376573 | 4.2:-29465165 | None:intergenic |
ACAAGGAAACAATTTATAGT+TGG | 0.386110 | 4.2:-29465131 | None:intergenic |
CAAGGAAACAATTTATAGTT+GGG | 0.388932 | 4.2:-29465130 | None:intergenic |
ATTTCGAACATACAACTGTT+AGG | 0.395712 | 4.2:-29465068 | None:intergenic |
AGGAACCAATTGCAAGCTTT+AGG | 0.419691 | 4.2:+29466387 | MS.gene73831:CDS |
TTGATGCATATATTGATCTT+GGG | 0.427037 | 4.2:+29465171 | MS.gene73831:CDS |
CCATGCCTAAAGCTTGCAAT+TGG | 0.438162 | 4.2:-29466392 | None:intergenic |
AAAGATAATATCTTCAAGCT+AGG | 0.454542 | 4.2:-29464876 | None:intergenic |
AACCTAGAATCTAAAATAGT+AGG | 0.465668 | 4.2:+29464757 | MS.gene73831:CDS |
AGAAAATGTCACGTTCTTAA+GGG | 0.467231 | 4.2:+29466305 | MS.gene73831:CDS |
AATTCCAACATTGAAGAAGT+TGG | 0.478445 | 4.2:+29465016 | MS.gene73831:CDS |
TTGGTAGTGTCGAGTCTCTC+AGG | 0.484028 | 4.2:+29465258 | MS.gene73831:CDS |
ACTAGATCTACGAGGCAATC+TGG | 0.484619 | 4.2:-29464601 | None:intergenic |
ATGTCCAACTTCTTCAATGT+TGG | 0.494500 | 4.2:-29465020 | None:intergenic |
GGTTGGATTTGTGAAGTAGT+TGG | 0.497013 | 4.2:-29464627 | None:intergenic |
GGATCTTACTTATCCTTGGA+TGG | 0.498856 | 4.2:+29466168 | MS.gene73831:CDS |
AAGGACAACTCTTGTAAGAC+AGG | 0.508600 | 4.2:-29464953 | None:intergenic |
TACCATCAGGTACAGAATCA+AGG | 0.516438 | 4.2:-29464845 | None:intergenic |
CTAGGTTAAGTGTAAGATCA+TGG | 0.524663 | 4.2:-29464741 | None:intergenic |
TTCCTTGATTCTGTACCTGA+TGG | 0.531110 | 4.2:+29464843 | MS.gene73831:CDS |
ATTGAGCTGTTCAGTCGTCT+TGG | 0.533363 | 4.2:+29465239 | MS.gene73831:CDS |
CTATGGAGGTAGAGTTAACA+AGG | 0.542514 | 4.2:-29465148 | None:intergenic |
CAATTGCAAGCTTTAGGCAT+GGG | 0.547449 | 4.2:+29466393 | MS.gene73831:CDS |
ACTTAAAGATGAAAGATTCA+CGG | 0.550056 | 4.2:-29465096 | None:intergenic |
AAGATAATATCTTCAAGCTA+GGG | 0.550299 | 4.2:-29464875 | None:intergenic |
AGCCGACTTCTCATTTGTGA+AGG | 0.550930 | 4.2:-29464910 | None:intergenic |
GGAGATGAACATTTACTGTA+CGG | 0.552497 | 4.2:+29466326 | MS.gene73831:CDS |
AGATGAAGCCGAAATCAGAT+TGG | 0.557556 | 4.2:+29466269 | MS.gene73831:CDS |
CTAGGGAAACAGATACCATC+AGG | 0.559011 | 4.2:-29464858 | None:intergenic |
AGAGAAGATTTGAAACAGCA+AGG | 0.559103 | 4.2:-29466216 | None:intergenic |
TGCGTCAAATTCTTGAACGA+AGG | 0.559936 | 4.2:-29465955 | None:intergenic |
TATCCTTGGATGGTGAAGAC+TGG | 0.573895 | 4.2:+29466178 | MS.gene73831:CDS |
TGTCCAGTCTTCACCATCCA+AGG | 0.574526 | 4.2:-29466181 | None:intergenic |
CCAATTGCAAGCTTTAGGCA+TGG | 0.576197 | 4.2:+29466392 | MS.gene73831:CDS |
AGATTGCCTCGTAGATCTAG+TGG | 0.576199 | 4.2:+29464603 | MS.gene73831:CDS |
TCTGCTAATACTTCACAACT+AGG | 0.576306 | 4.2:-29466000 | None:intergenic |
TACCTTCACAAATGAGAAGT+CGG | 0.580484 | 4.2:+29464908 | MS.gene73831:CDS |
CATCAACTATTGTTGATACA+GGG | 0.584309 | 4.2:+29464677 | MS.gene73831:CDS |
TCATTAACTTGCGTCACTCG+TGG | 0.584904 | 4.2:+29466424 | MS.gene73831:CDS |
GAGATGAACATTTACTGTAC+GGG | 0.586511 | 4.2:+29466327 | MS.gene73831:CDS |
AGAATTTCTTGACATTTATG+GGG | 0.610502 | 4.2:+29466047 | MS.gene73831:CDS |
CGAAGAAGCTGGCTGATGTG+AGG | 0.621819 | 4.2:+29466367 | MS.gene73831:CDS |
AATATATGCATCAACTATGG+AGG | 0.633314 | 4.2:-29465162 | None:intergenic |
AGGACAACTCTTGTAAGACA+GGG | 0.690229 | 4.2:-29464952 | None:intergenic |
GTTGGTCCACTAGATCTACG+AGG | 0.818443 | 4.2:-29464609 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAAGTTAATTAAATGA+GGG | - | chr4.2:29465428-29465447 | None:intergenic | 10.0% |
!! | TATAAAAAGTTAATTAAATG+AGG | - | chr4.2:29465429-29465448 | None:intergenic | 10.0% |
!! | AAAGATATGCAAATAATATA+AGG | - | chr4.2:29465660-29465679 | None:intergenic | 15.0% |
!! | ATTATTTGCATATCTTTAAA+GGG | + | chr4.2:29465663-29465682 | MS.gene73831:intron | 15.0% |
!! | TAAAAAGTTAATTAAATGAG+GGG | - | chr4.2:29465427-29465446 | None:intergenic | 15.0% |
!! | TATTATTTGCATATCTTTAA+AGG | + | chr4.2:29465662-29465681 | MS.gene73831:intron | 15.0% |
!! | TAGAATTTCTTGACATTTAT+GGG | + | chr4.2:29466046-29466065 | MS.gene73831:CDS | 20.0% |
!! | TGATCAATTACATTTCTAAT+AGG | + | chr4.2:29465535-29465554 | MS.gene73831:intron | 20.0% |
!! | TTGCTTATATTTCATTACAA+AGG | - | chr4.2:29465359-29465378 | None:intergenic | 20.0% |
!!! | GACACAACTAATTTTTATAA+AGG | - | chr4.2:29465781-29465800 | None:intergenic | 20.0% |
! | AAAGATAATATCTTCAAGCT+AGG | - | chr4.2:29464879-29464898 | None:intergenic | 25.0% |
! | AAATTATTGTTAGCCGTTAA+AGG | - | chr4.2:29466109-29466128 | None:intergenic | 25.0% |
! | AAGATAATATCTTCAAGCTA+GGG | - | chr4.2:29464878-29464897 | None:intergenic | 25.0% |
! | ACAAGGAAACAATTTATAGT+TGG | - | chr4.2:29465134-29465153 | None:intergenic | 25.0% |
! | ACTTAAAGATGAAAGATTCA+CGG | - | chr4.2:29465099-29465118 | None:intergenic | 25.0% |
! | AGAATTTCTTGACATTTATG+GGG | + | chr4.2:29466047-29466066 | MS.gene73831:CDS | 25.0% |
! | ATCAATATATGCATCAACTA+TGG | - | chr4.2:29465168-29465187 | None:intergenic | 25.0% |
! | ATCGTTGTGATATTTAAAGA+AGG | - | chr4.2:29465872-29465891 | None:intergenic | 25.0% |
! | ATGACCCAATTTATTAATCA+TGG | + | chr4.2:29465455-29465474 | MS.gene73831:intron | 25.0% |
! | ATTGTTAAATAAGATCGAAG+TGG | - | chr4.2:29465389-29465408 | None:intergenic | 25.0% |
! | CAAGGAAACAATTTATAGTT+GGG | - | chr4.2:29465133-29465152 | None:intergenic | 25.0% |
! | CTAGAATTTCTTGACATTTA+TGG | + | chr4.2:29466045-29466064 | MS.gene73831:CDS | 25.0% |
! | TCGTTGTGATATTTAAAGAA+GGG | - | chr4.2:29465871-29465890 | None:intergenic | 25.0% |
! | TTGATGCATATATTGATCTT+GGG | + | chr4.2:29465171-29465190 | MS.gene73831:CDS | 25.0% |
!! | AACCTAGAATCTAAAATAGT+AGG | + | chr4.2:29464757-29464776 | MS.gene73831:CDS | 25.0% |
!! | ACTAAGTTGGATATAGTATT+TGG | + | chr4.2:29464819-29464838 | MS.gene73831:intron | 25.0% |
!!! | AACCTACTATTTTAGATTCT+AGG | - | chr4.2:29464762-29464781 | None:intergenic | 25.0% |
!!! | ATGTCAAGAAATTCTAGTTT+AGG | - | chr4.2:29466042-29466061 | None:intergenic | 25.0% |
!!! | TGTGTATTGATTCTTGTTTA+GGG | + | chr4.2:29466147-29466166 | MS.gene73831:intron | 25.0% |
!!! | TTGTGTATTGATTCTTGTTT+AGG | + | chr4.2:29466146-29466165 | MS.gene73831:intron | 25.0% |
AAACTTCACCAATCTGATTT+CGG | - | chr4.2:29466280-29466299 | None:intergenic | 30.0% | |
AATATATGCATCAACTATGG+AGG | - | chr4.2:29465165-29465184 | None:intergenic | 30.0% | |
AATTCCAACATTGAAGAAGT+TGG | + | chr4.2:29465016-29465035 | MS.gene73831:CDS | 30.0% | |
ACCCAATTTATTAATCATGG+AGG | + | chr4.2:29465458-29465477 | MS.gene73831:intron | 30.0% | |
ACCCTCCATGATTAATAAAT+TGG | - | chr4.2:29465463-29465482 | None:intergenic | 30.0% | |
AGAAAATGTCACGTTCTTAA+GGG | + | chr4.2:29466305-29466324 | MS.gene73831:CDS | 30.0% | |
ATCAAAAAAATCGAAGAAGC+TGG | + | chr4.2:29466356-29466375 | MS.gene73831:CDS | 30.0% | |
ATCACACTACGTAATACTTA+AGG | - | chr4.2:29465580-29465599 | None:intergenic | 30.0% | |
ATTTCGAACATACAACTGTT+AGG | - | chr4.2:29465071-29465090 | None:intergenic | 30.0% | |
CATCAACTATTGTTGATACA+GGG | + | chr4.2:29464677-29464696 | MS.gene73831:CDS | 30.0% | |
CCCAATTTATTAATCATGGA+GGG | + | chr4.2:29465459-29465478 | MS.gene73831:intron | 30.0% | |
CCCTCCATGATTAATAAATT+GGG | - | chr4.2:29465462-29465481 | None:intergenic | 30.0% | |
CTAAAAGACACCTTCATAAA+AGG | + | chr4.2:29465829-29465848 | MS.gene73831:intron | 30.0% | |
GTTGATGCATATATTGATCT+TGG | + | chr4.2:29465170-29465189 | MS.gene73831:CDS | 30.0% | |
TAGAAAATGTCACGTTCTTA+AGG | + | chr4.2:29466304-29466323 | MS.gene73831:CDS | 30.0% | |
TCACACTACGTAATACTTAA+GGG | - | chr4.2:29465579-29465598 | None:intergenic | 30.0% | |
! | CAATGAAGAGCTCTTTTATA+CGG | - | chr4.2:29464651-29464670 | None:intergenic | 30.0% |
! | TGTGATATTTCAGATTTTCG+TGG | + | chr4.2:29466246-29466265 | MS.gene73831:CDS | 30.0% |
!! | ATTCTAGTTTAGGACTCTTT+CGG | - | chr4.2:29466032-29466051 | None:intergenic | 30.0% |
AAAGTGAAAATCACACCTTG+AGG | - | chr4.2:29465733-29465752 | None:intergenic | 35.0% | |
ATGCTAAAAGACACCTTTCA+TGG | - | chr4.2:29465705-29465724 | None:intergenic | 35.0% | |
ATGTCCAACTTCTTCAATGT+TGG | - | chr4.2:29465023-29465042 | None:intergenic | 35.0% | |
CACACTACGTAATACTTAAG+GGG | - | chr4.2:29465578-29465597 | None:intergenic | 35.0% | |
CCATCAACTATTGTTGATAC+AGG | + | chr4.2:29464676-29464695 | MS.gene73831:CDS | 35.0% | |
CCTGTATCAACAATAGTTGA+TGG | - | chr4.2:29464679-29464698 | None:intergenic | 35.0% | |
CTAGGTTAAGTGTAAGATCA+TGG | - | chr4.2:29464744-29464763 | None:intergenic | 35.0% | |
GAGATGAACATTTACTGTAC+GGG | + | chr4.2:29466327-29466346 | MS.gene73831:CDS | 35.0% | |
GCTATCAGATGAAACTATTC+AGG | + | chr4.2:29465280-29465299 | MS.gene73831:CDS | 35.0% | |
GGAGATGAACATTTACTGTA+CGG | + | chr4.2:29466326-29466345 | MS.gene73831:CDS | 35.0% | |
GTCCTTCGAAAAATGTTACT+GGG | + | chr4.2:29464970-29464989 | MS.gene73831:CDS | 35.0% | |
TACCTTCACAAATGAGAAGT+CGG | + | chr4.2:29464908-29464927 | MS.gene73831:CDS | 35.0% | |
TATCCAACTTAGTCAATGAC+CGG | - | chr4.2:29464812-29464831 | None:intergenic | 35.0% | |
TCCTTCGAAAAATGTTACTG+GGG | + | chr4.2:29464971-29464990 | MS.gene73831:CDS | 35.0% | |
TCTGCTAATACTTCACAACT+AGG | - | chr4.2:29466003-29466022 | None:intergenic | 35.0% | |
TGCTAAAAGACACCTTTCAT+GGG | - | chr4.2:29465704-29465723 | None:intergenic | 35.0% | |
TGTCCTTCGAAAAATGTTAC+TGG | + | chr4.2:29464969-29464988 | MS.gene73831:CDS | 35.0% | |
TTAGGGATCTTACTTATCCT+TGG | + | chr4.2:29466164-29466183 | MS.gene73831:intron | 35.0% | |
TTATTGTTAGCCGTTAAAGG+TGG | - | chr4.2:29466106-29466125 | None:intergenic | 35.0% | |
! | AGAGAAGATTTGAAACAGCA+AGG | - | chr4.2:29466219-29466238 | None:intergenic | 35.0% |
! | CAACATGCAGTTCGTTATTT+TGG | - | chr4.2:29465208-29465227 | None:intergenic | 35.0% |
! | TAAAGAAGGGTTTTGCTAGA+AGG | - | chr4.2:29465858-29465877 | None:intergenic | 35.0% |
! | TAGAAGGACACCTTTTATGA+AGG | - | chr4.2:29465842-29465861 | None:intergenic | 35.0% |
! | TTTTCTTCTGCCACCTTTAA+CGG | + | chr4.2:29466093-29466112 | MS.gene73831:intron | 35.0% |
AAAGGTGGCAGAAGAAAATC+TGG | - | chr4.2:29466091-29466110 | None:intergenic | 40.0% | |
AAGGACAACTCTTGTAAGAC+AGG | - | chr4.2:29464956-29464975 | None:intergenic | 40.0% | |
AGATGAAGCCGAAATCAGAT+TGG | + | chr4.2:29466269-29466288 | MS.gene73831:CDS | 40.0% | |
AGGAACCAATTGCAAGCTTT+AGG | + | chr4.2:29466387-29466406 | MS.gene73831:CDS | 40.0% | |
AGGACAACTCTTGTAAGACA+GGG | - | chr4.2:29464955-29464974 | None:intergenic | 40.0% | |
ATCCAACTTAGTCAATGACC+GGG | - | chr4.2:29464811-29464830 | None:intergenic | 40.0% | |
CGTGTTACCCAATAGTTTCT+CGG | + | chr4.2:29464782-29464801 | MS.gene73831:intron | 40.0% | |
CTATGGAGGTAGAGTTAACA+AGG | - | chr4.2:29465151-29465170 | None:intergenic | 40.0% | |
GGATCTTACTTATCCTTGGA+TGG | + | chr4.2:29466168-29466187 | MS.gene73831:CDS | 40.0% | |
GGTTGGATTTGTGAAGTAGT+TGG | - | chr4.2:29464630-29464649 | None:intergenic | 40.0% | |
TACCATCAGGTACAGAATCA+AGG | - | chr4.2:29464848-29464867 | None:intergenic | 40.0% | |
TGCGTCAAATTCTTGAACGA+AGG | - | chr4.2:29465958-29465977 | None:intergenic | 40.0% | |
TTCCTTGATTCTGTACCTGA+TGG | + | chr4.2:29464843-29464862 | MS.gene73831:CDS | 40.0% | |
! | GAAGAGCTCTTTTATACGGT+TGG | - | chr4.2:29464647-29464666 | None:intergenic | 40.0% |
!! | ACCCCAGTAACATTTTTCGA+AGG | - | chr4.2:29464975-29464994 | None:intergenic | 40.0% |
!! | CAATTGCAAGCTTTAGGCAT+GGG | + | chr4.2:29466393-29466412 | MS.gene73831:CDS | 40.0% |
!! | TCGGCTCAAAGACTTTTTCT+GGG | + | chr4.2:29464927-29464946 | MS.gene73831:CDS | 40.0% |
ACTAGATCTACGAGGCAATC+TGG | - | chr4.2:29464604-29464623 | None:intergenic | 45.0% | |
AGATTGCCTCGTAGATCTAG+TGG | + | chr4.2:29464603-29464622 | MS.gene73831:CDS | 45.0% | |
ATTGAGCTGTTCAGTCGTCT+TGG | + | chr4.2:29465239-29465258 | MS.gene73831:CDS | 45.0% | |
CCATGCCTAAAGCTTGCAAT+TGG | - | chr4.2:29466395-29466414 | None:intergenic | 45.0% | |
CTAGGGAAACAGATACCATC+AGG | - | chr4.2:29464861-29464880 | None:intergenic | 45.0% | |
GAAAATCACACCTTGAGGTG+TGG | - | chr4.2:29465728-29465747 | None:intergenic | 45.0% | |
GCGTAGTTAAGACACTAGCA+AGG | - | chr4.2:29465913-29465932 | None:intergenic | 45.0% | |
TATCCTTGGATGGTGAAGAC+TGG | + | chr4.2:29466178-29466197 | MS.gene73831:CDS | 45.0% | |
TGCTAGAAGCTACCCATGAA+AGG | + | chr4.2:29465689-29465708 | MS.gene73831:intron | 45.0% | |
! | AGCCGACTTCTCATTTGTGA+AGG | - | chr4.2:29464913-29464932 | None:intergenic | 45.0% |
! | ATCCCGGTCATTGACTAAGT+TGG | + | chr4.2:29464806-29464825 | MS.gene73831:intron | 45.0% |
! | CTTTTAGCATCCACACCTCA+AGG | + | chr4.2:29465715-29465734 | MS.gene73831:intron | 45.0% |
!! | CCAATTGCAAGCTTTAGGCA+TGG | + | chr4.2:29466392-29466411 | MS.gene73831:CDS | 45.0% |
!! | GTCGGCTCAAAGACTTTTTC+TGG | + | chr4.2:29464926-29464945 | MS.gene73831:CDS | 45.0% |
!! | TCATTAACTTGCGTCACTCG+TGG | + | chr4.2:29466424-29466443 | MS.gene73831:CDS | 45.0% |
CCAATAGTTTCTCGGCATCC+CGG | + | chr4.2:29464790-29464809 | MS.gene73831:intron | 50.0% | |
CGGGATGCCGAGAAACTATT+GGG | - | chr4.2:29464792-29464811 | None:intergenic | 50.0% | |
GTTGGTCCACTAGATCTACG+AGG | - | chr4.2:29464612-29464631 | None:intergenic | 50.0% | |
TGTCCAGTCTTCACCATCCA+AGG | - | chr4.2:29466184-29466203 | None:intergenic | 50.0% | |
!! | TTGGTAGTGTCGAGTCTCTC+AGG | + | chr4.2:29465258-29465277 | MS.gene73831:CDS | 50.0% |
CCGGGATGCCGAGAAACTAT+TGG | - | chr4.2:29464793-29464812 | None:intergenic | 55.0% | |
CGAAGAAGCTGGCTGATGTG+AGG | + | chr4.2:29466367-29466386 | MS.gene73831:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 29464586 | 29466452 | 29464586 | ID=MS.gene73831 |
chr4.2 | mRNA | 29464586 | 29466452 | 29464586 | ID=MS.gene73831.t1;Parent=MS.gene73831 |
chr4.2 | exon | 29464586 | 29464795 | 29464586 | ID=MS.gene73831.t1.exon1;Parent=MS.gene73831.t1 |
chr4.2 | CDS | 29464586 | 29464795 | 29464586 | ID=cds.MS.gene73831.t1;Parent=MS.gene73831.t1 |
chr4.2 | exon | 29464825 | 29465301 | 29464825 | ID=MS.gene73831.t1.exon2;Parent=MS.gene73831.t1 |
chr4.2 | CDS | 29464825 | 29465301 | 29464825 | ID=cds.MS.gene73831.t1;Parent=MS.gene73831.t1 |
chr4.2 | exon | 29465919 | 29466068 | 29465919 | ID=MS.gene73831.t1.exon3;Parent=MS.gene73831.t1 |
chr4.2 | CDS | 29465919 | 29466068 | 29465919 | ID=cds.MS.gene73831.t1;Parent=MS.gene73831.t1 |
chr4.2 | exon | 29466168 | 29466452 | 29466168 | ID=MS.gene73831.t1.exon4;Parent=MS.gene73831.t1 |
chr4.2 | CDS | 29466168 | 29466452 | 29466168 | ID=cds.MS.gene73831.t1;Parent=MS.gene73831.t1 |
Gene Sequence |
Protein sequence |