AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028696

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028696.t1 MTR_2g094750 90.625 192 17 1 98 289 271 461 2.76e-118 352
MS.gene028696.t1 MTR_2g094750 96.040 101 4 0 1 101 22 122 3.96e-59 199
MS.gene028696.t1 MTR_2g094450 77.249 189 25 2 111 299 29 199 7.19e-96 285
MS.gene028696.t1 MTR_4g080787 43.929 280 142 7 102 379 197 463 1.48e-51 179
MS.gene028696.t1 MTR_7g023330 40.893 291 156 7 94 380 118 396 1.56e-51 177
MS.gene028696.t1 MTR_4g080773 44.128 281 145 6 102 380 197 467 5.27e-50 176
MS.gene028696.t1 MTR_4g080773 44.128 281 145 6 102 380 197 467 5.87e-50 175
MS.gene028696.t1 MTR_4g080807 42.231 251 132 5 125 373 84 323 7.98e-43 154
MS.gene028696.t1 MTR_3g048290 40.138 289 155 8 98 379 187 464 1.01e-42 155
MS.gene028696.t1 MTR_4g080590 40.636 283 149 10 102 380 185 452 5.48e-41 150
MS.gene028696.t1 MTR_5g039950 37.500 280 132 9 103 379 176 415 3.64e-37 139
MS.gene028696.t1 MTR_7g023310 42.045 264 142 7 91 350 175 431 2.72e-36 137
MS.gene028696.t1 MTR_4g130200 35.636 275 135 6 108 380 158 392 3.53e-33 128
MS.gene028696.t1 MTR_7g039630 42.328 189 103 4 103 290 158 341 7.75e-33 126
MS.gene028696.t1 MTR_2g102420 71.084 83 23 1 207 289 7 88 1.18e-31 115
MS.gene028696.t1 MTR_5g039970 47.518 141 60 5 102 237 185 316 5.92e-22 95.9
MS.gene028696.t1 MTR_4g080590 41.398 186 95 8 102 285 185 358 1.77e-21 95.1
MS.gene028696.t1 MTR_4g081030 38.889 162 92 4 97 258 167 321 2.43e-18 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028696.t1 AT5G22660 28.340 247 167 9 104 346 174 414 1.07e-11 66.6
MS.gene028696.t1 AT5G44950 25.506 247 158 9 113 348 176 407 6.34e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCACTTTGTTGCTAATA+TGG 0.147613 2.1:+8465733 None:intergenic
GTCATTCATATCCGTGAATT+TGG 0.193080 2.1:+8464453 None:intergenic
ATGTTTCTGCTCATCTTTCT+AGG 0.214446 2.1:+8465959 None:intergenic
TCATCACAATTTAGGCAATA+AGG 0.246617 2.1:+8465116 None:intergenic
TGTTGCATTAAATAAGTAAT+TGG 0.255635 2.1:+8464954 None:intergenic
ACATGTTTCTTCTCCTTATT+CGG 0.260961 2.1:-8464934 MS.gene028696:CDS
CTCAATAGCGCAACCGAATA+AGG 0.263284 2.1:+8464921 None:intergenic
CAGAGAAATCATCACAATTT+AGG 0.282935 2.1:+8465108 None:intergenic
TGAATCATCATCACCCAAAA+TGG 0.290481 2.1:-8465837 MS.gene028696:CDS
GACACATCTTTGTCTGGCTT+TGG 0.323841 2.1:-8464664 MS.gene028696:CDS
AAAATGACGAATAAGTTATC+TGG 0.329953 2.1:+8464296 None:intergenic
CAATTTGACACATCTTTGTC+TGG 0.334586 2.1:-8464670 MS.gene028696:CDS
TGACTTTGAACTATTGCTAT+TGG 0.352952 2.1:-8465202 MS.gene028696:CDS
TGGAAGATGGTGGACATCTT+TGG 0.354808 2.1:+8465931 None:intergenic
TAAAACAAGAACTTCCAGTT+TGG 0.374755 2.1:+8464590 None:intergenic
CATCACAATTTAGGCAATAA+GGG 0.389903 2.1:+8465117 None:intergenic
TCTCCTAAGGTGTCCCAAAC+TGG 0.398091 2.1:-8464604 MS.gene028696:CDS
CTTCACATTTCAATTTATGA+TGG 0.399682 2.1:-8464382 MS.gene028696:CDS
GATGTCAAGAACCAACTTGC+AGG 0.401191 2.1:-8464238 MS.gene028696:CDS
ATGCATCAGCTATGGAAGTT+GGG 0.406039 2.1:+8465000 None:intergenic
GTTAACAATGATAAATTGTA+TGG 0.409225 2.1:+8465025 None:intergenic
AATGGTGGACGAGTCCATTC+AGG 0.410201 2.1:+8466013 None:intergenic
AATATGGTGAAGAATGTTAT+CGG 0.426309 2.1:+8465793 None:intergenic
TTAAAACAAACTCAATGAAT+CGG 0.430318 2.1:+8464344 None:intergenic
ATTTATGATGGATCTGATCA+TGG 0.434977 2.1:-8464370 MS.gene028696:CDS
CTTCCAGTTTGGGACACCTT+AGG 0.435607 2.1:+8464601 None:intergenic
TGGAGAGAAATGAAAGAATA+TGG 0.436351 2.1:+8465777 None:intergenic
TATGCATCAGCTATGGAAGT+TGG 0.445910 2.1:+8464999 None:intergenic
AAAACAAGAACTTCCAGTTT+GGG 0.458802 2.1:+8464591 None:intergenic
AAAGTCAAATCTTGTAGGAC+AGG 0.473539 2.1:+8465218 None:intergenic
TCTTGTGATAACAATTCAAA+TGG 0.481983 2.1:+8465995 None:intergenic
CAAGAACCAACTTGCAGGCA+TGG 0.488544 2.1:-8464233 MS.gene028696:CDS
TATTCGGTTGCGCTATTGAG+TGG 0.492244 2.1:-8464918 MS.gene028696:CDS
TTAGGCAGTTACCAAATTCA+CGG 0.503588 2.1:-8464464 MS.gene028696:intron
AAGCCGGAGCAATGCCTGAA+TGG 0.505666 2.1:-8466027 None:intergenic
TTCAATATATGCATCAGCTA+TGG 0.507443 2.1:+8464992 None:intergenic
ATGCTTGATTGCCCAAGAAA+AGG 0.510796 2.1:+8465906 None:intergenic
AGTTCAAAGTCAAATCTTGT+AGG 0.513281 2.1:+8465213 None:intergenic
ACAATGATAAATTGTATGGT+TGG 0.515480 2.1:+8465029 None:intergenic
TGTGTCAAATTGTGGAACTC+AGG 0.519595 2.1:+8464681 None:intergenic
CATTAATGGAATTTCTCCTA+AGG 0.519925 2.1:-8464617 MS.gene028696:CDS
GACAAAGATGTGTCAAATTG+TGG 0.520664 2.1:+8464673 None:intergenic
ATATGGTGAAGAATGTTATC+GGG 0.523562 2.1:+8465794 None:intergenic
TGATTGCCCAAGAAAAGGTA+TGG 0.532928 2.1:+8465911 None:intergenic
TTACAAGCATTTCATGAACC+TGG 0.536040 2.1:-8464263 MS.gene028696:CDS
TGCATCAGCTATGGAAGTTG+GGG 0.541049 2.1:+8465001 None:intergenic
AAGAACCAACTTGCAGGCAT+GGG 0.541950 2.1:-8464232 MS.gene028696:CDS
CCATTGCTACTTCCACATTG+AGG 0.551452 2.1:-8465160 MS.gene028696:CDS
CCAAGAAAAGGTATGGAAGA+TGG 0.559855 2.1:+8465918 None:intergenic
GCATTAAATAAGTAATTGGA+AGG 0.563337 2.1:+8464958 None:intergenic
AACTTCCCATGCCTGCAAGT+TGG 0.564583 2.1:+8464227 None:intergenic
TGTGGAACTCAGGAAGGAGA+TGG 0.566882 2.1:+8464691 None:intergenic
GATTTGAAACAACAAGGCAC+TGG 0.568724 2.1:+8464418 None:intergenic
CAAGTCTCTCACAATATCAA+AGG 0.572089 2.1:-8464883 MS.gene028696:CDS
GTTGGTTCTTGACATCCGCC+AGG 0.572747 2.1:+8464245 None:intergenic
GCAATAAGGGTCAGAACGGA+TGG 0.579037 2.1:+8465130 None:intergenic
TGTGATAACAATTCAAATGG+TGG 0.583292 2.1:+8465998 None:intergenic
CATCCATATTAGCAACAAAG+TGG 0.588171 2.1:-8465736 MS.gene028696:CDS
TCAAATTGTGGAACTCAGGA+AGG 0.589398 2.1:+8464685 None:intergenic
CCTCAATGTGGAAGTAGCAA+TGG 0.606375 2.1:+8465160 None:intergenic
TCTTTCATTTCTCTCCACCA+AGG 0.625912 2.1:-8465771 MS.gene028696:CDS
TAGAAAGATGAGCAGAAACA+TGG 0.634417 2.1:-8465957 MS.gene028696:CDS
TTAGGCAATAAGGGTCAGAA+CGG 0.640535 2.1:+8465126 None:intergenic
GCATCAGCTATGGAAGTTGG+GGG 0.643311 2.1:+8465002 None:intergenic
AGAAAAGGTATGGAAGATGG+TGG 0.647652 2.1:+8465921 None:intergenic
AGATGATCAATTACATAGAG+AGG 0.648156 2.1:+8464714 None:intergenic
AAGTCAAATCTTGTAGGACA+GGG 0.660614 2.1:+8465219 None:intergenic
CAAGCATTTCATGAACCTGG+CGG 0.671103 2.1:-8464260 MS.gene028696:CDS
CCATATTAGCAACAAAGTGG+AGG 0.671360 2.1:-8465733 MS.gene028696:intron
GATGGTCAAAATCCTCAATG+TGG 0.685889 2.1:+8465148 None:intergenic
AGAGAAGATTTGAAACAACA+AGG 0.691510 2.1:+8464412 None:intergenic
CATCAGCTATGGAAGTTGGG+GGG 0.692828 2.1:+8465003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATGAAAATCATAGA+CGG + chr2.1:8464514-8464533 None:intergenic 15.0%
!!! TTGTTAATTGATTCTTATTT+AGG - chr2.1:8465720-8465739 MS.gene028696:intron 15.0%
!! GTTAACAATGATAAATTGTA+TGG + chr2.1:8465180-8465199 None:intergenic 20.0%
!! TGTTGCATTAAATAAGTAAT+TGG + chr2.1:8465251-8465270 None:intergenic 20.0%
!! TTAAAACAAACTCAATGAAT+CGG + chr2.1:8465861-8465880 None:intergenic 20.0%
!!! AATTGAACAATTTTTTTCTG+AGG - chr2.1:8464956-8464975 MS.gene028696:CDS 20.0%
!!! ACTAATATTTTTCTCCATTT+TGG + chr2.1:8464382-8464401 None:intergenic 20.0%
!!! ATGAAAGATTTAAAGTCTTA+AGG + chr2.1:8464911-8464930 None:intergenic 20.0%
!!! ATTGAACAATTTTTTTCTGA+GGG - chr2.1:8464957-8464976 MS.gene028696:CDS 20.0%
!!! CTAATATTTTTCTCCATTTT+GGG + chr2.1:8464381-8464400 None:intergenic 20.0%
!!! TGAAAGATTTAAAGTCTTAA+GGG + chr2.1:8464910-8464929 None:intergenic 20.0%
! AAAATCATAGACGGATAATT+GGG + chr2.1:8464505-8464524 None:intergenic 25.0%
! AAAATGACGAATAAGTTATC+TGG + chr2.1:8465909-8465928 None:intergenic 25.0%
! AATATGGTGAAGAATGTTAT+CGG + chr2.1:8464412-8464431 None:intergenic 25.0%
! ACAATGATAAATTGTATGGT+TGG + chr2.1:8465176-8465195 None:intergenic 25.0%
! AGAATCAATTAACAAGTCAA+TGG + chr2.1:8465715-8465734 None:intergenic 25.0%
! CTTCACATTTCAATTTATGA+TGG - chr2.1:8465820-8465839 MS.gene028696:CDS 25.0%
! CTTCAGTAGAAAAACATTAA+TGG - chr2.1:8465571-8465590 MS.gene028696:intron 25.0%
! GCATTAAATAAGTAATTGGA+AGG + chr2.1:8465247-8465266 None:intergenic 25.0%
! TCTTGTGATAACAATTCAAA+TGG + chr2.1:8464210-8464229 None:intergenic 25.0%
! TTTACTCTATTTATTCCTAC+CGG - chr2.1:8464870-8464889 MS.gene028696:intron 25.0%
!! AATATCAAAGGACACTTTTA+GGG - chr2.1:8465331-8465350 MS.gene028696:intron 25.0%
!!! ATTGTTTTAACCTTGAAATG+GGG + chr2.1:8465678-8465697 None:intergenic 25.0%
!!! CATTGTTTTAACCTTGAAAT+GGG + chr2.1:8465679-8465698 None:intergenic 25.0%
!!! TATTGTTGTTTCCTTTTTCT+AGG - chr2.1:8465463-8465482 MS.gene028696:intron 25.0%
!!! TCATTGTTTTAACCTTGAAA+TGG + chr2.1:8465680-8465699 None:intergenic 25.0%
!!! TTGAACAATTTTTTTCTGAG+GGG - chr2.1:8464958-8464977 MS.gene028696:CDS 25.0%
AAAACAAGAACTTCCAGTTT+GGG + chr2.1:8465614-8465633 None:intergenic 30.0%
AAACAACAATAGACTTGCAT+GGG + chr2.1:8465454-8465473 None:intergenic 30.0%
AAGTTTCACGAGAGAAAAAT+TGG - chr2.1:8466006-8466025 MS.gene028696:CDS 30.0%
ACATGTTTCTTCTCCTTATT+CGG - chr2.1:8465268-8465287 MS.gene028696:intron 30.0%
ACTAAACTATCGTTACAACT+TGG - chr2.1:8464843-8464862 MS.gene028696:intron 30.0%
AGATGATCAATTACATAGAG+AGG + chr2.1:8465491-8465510 None:intergenic 30.0%
AGTTCAAAGTCAAATCTTGT+AGG + chr2.1:8464992-8465011 None:intergenic 30.0%
AGTTTCACGAGAGAAAAATT+GGG - chr2.1:8466007-8466026 MS.gene028696:CDS 30.0%
ATATGGTGAAGAATGTTATC+GGG + chr2.1:8464411-8464430 None:intergenic 30.0%
ATTAGATTTGTGAAGTAGTG+TGG + chr2.1:8464598-8464617 None:intergenic 30.0%
CAGAGAAATCATCACAATTT+AGG + chr2.1:8465097-8465116 None:intergenic 30.0%
CATCACAATTTAGGCAATAA+GGG + chr2.1:8465088-8465107 None:intergenic 30.0%
CATTAATGGAATTTCTCCTA+AGG - chr2.1:8465585-8465604 MS.gene028696:intron 30.0%
GAAAATCATAGACGGATAAT+TGG + chr2.1:8464506-8464525 None:intergenic 30.0%
TAAAACAAGAACTTCCAGTT+TGG + chr2.1:8465615-8465634 None:intergenic 30.0%
TATCATCTATGCAAAGTTGA+AGG + chr2.1:8464764-8464783 None:intergenic 30.0%
TCAATTAACAAGTCAATGGA+TGG + chr2.1:8465711-8465730 None:intergenic 30.0%
TCATCACAATTTAGGCAATA+AGG + chr2.1:8465089-8465108 None:intergenic 30.0%
TGACTTTGAACTATTGCTAT+TGG - chr2.1:8465000-8465019 MS.gene028696:CDS 30.0%
TGGAGAGAAATGAAAGAATA+TGG + chr2.1:8464428-8464447 None:intergenic 30.0%
TGTGATAACAATTCAAATGG+TGG + chr2.1:8464207-8464226 None:intergenic 30.0%
TTCAATATATGCATCAGCTA+TGG + chr2.1:8465213-8465232 None:intergenic 30.0%
! AAAGAATGCTAGACTTTTAG+AGG - chr2.1:8465879-8465898 MS.gene028696:CDS 30.0%
! AGAGAAGATTTGAAACAACA+AGG + chr2.1:8465793-8465812 None:intergenic 30.0%
! AGATTTAAAGTCTTAAGGGT+AGG + chr2.1:8464906-8464925 None:intergenic 30.0%
! CAATATCAAAGGACACTTTT+AGG - chr2.1:8465330-8465349 MS.gene028696:intron 30.0%
! GATTTAAAGTCTTAAGGGTA+GGG + chr2.1:8464905-8464924 None:intergenic 30.0%
!! AATTGACTTGTCACTTTCAA+AGG + chr2.1:8464940-8464959 None:intergenic 30.0%
!! ATTTATGATGGATCTGATCA+TGG - chr2.1:8465832-8465851 MS.gene028696:CDS 30.0%
!!! AACTCGAGGTGTTATTTTAA+TGG + chr2.1:8464640-8464659 None:intergenic 30.0%
!!! TTGTTTTAACCTTGAAATGG+GGG + chr2.1:8465677-8465696 None:intergenic 30.0%
!!! TTTTGATTTTGAGGATGAGA+AGG + chr2.1:8464540-8464559 None:intergenic 30.0%
AAACTATCGTTACAACTTGG+CGG - chr2.1:8464846-8464865 MS.gene028696:intron 35.0%
AAAGTCAAATCTTGTAGGAC+AGG + chr2.1:8464987-8465006 None:intergenic 35.0%
AAGTCAAATCTTGTAGGACA+GGG + chr2.1:8464986-8465005 None:intergenic 35.0%
AGTGAGATGTTGAGAAACTA+CGG + chr2.1:8464818-8464837 None:intergenic 35.0%
ATAGAGAGGTTCCTAGAAAA+AGG + chr2.1:8465477-8465496 None:intergenic 35.0%
CAAGTCTCTCACAATATCAA+AGG - chr2.1:8465319-8465338 MS.gene028696:intron 35.0%
CAATTTGACACATCTTTGTC+TGG - chr2.1:8465532-8465551 MS.gene028696:intron 35.0%
CATCCATATTAGCAACAAAG+TGG - chr2.1:8464466-8464485 MS.gene028696:intron 35.0%
GAAACAACAATAGACTTGCA+TGG + chr2.1:8465455-8465474 None:intergenic 35.0%
GACAAAGATGTGTCAAATTG+TGG + chr2.1:8465532-8465551 None:intergenic 35.0%
GTCATTCATATCCGTGAATT+TGG + chr2.1:8465752-8465771 None:intergenic 35.0%
TAGAAAGATGAGCAGAAACA+TGG - chr2.1:8464245-8464264 MS.gene028696:CDS 35.0%
TGAATCATCATCACCCAAAA+TGG - chr2.1:8464365-8464384 MS.gene028696:CDS 35.0%
TGTGCATCAAAAATAACTCG+AGG + chr2.1:8464654-8464673 None:intergenic 35.0%
TTACAAGCATTTCATGAACC+TGG - chr2.1:8465939-8465958 MS.gene028696:CDS 35.0%
TTAGGCAGTTACCAAATTCA+CGG - chr2.1:8465738-8465757 MS.gene028696:CDS 35.0%
! ATGTTTCTGCTCATCTTTCT+AGG + chr2.1:8464246-8464265 None:intergenic 35.0%
! CATCTTCCATACCTTTTCTT+GGG - chr2.1:8464285-8464304 MS.gene028696:CDS 35.0%
! GCAACAGCAAATTCTCTTTT+AGG - chr2.1:8464564-8464583 MS.gene028696:intron 35.0%
!!! GTTGCTGAGTTTTGATTTTG+AGG + chr2.1:8464549-8464568 None:intergenic 35.0%
ATGCATCAGCTATGGAAGTT+GGG + chr2.1:8465205-8465224 None:intergenic 40.0%
ATGCTTGATTGCCCAAGAAA+AGG + chr2.1:8464299-8464318 None:intergenic 40.0%
CCATATTAGCAACAAAGTGG+AGG - chr2.1:8464469-8464488 MS.gene028696:intron 40.0%
CCTCCACTTTGTTGCTAATA+TGG + chr2.1:8464472-8464491 None:intergenic 40.0%
GATGGTCAAAATCCTCAATG+TGG + chr2.1:8465057-8465076 None:intergenic 40.0%
GTGAGATGTTGAGAAACTAC+GGG + chr2.1:8464817-8464836 None:intergenic 40.0%
TATGCATCAGCTATGGAAGT+TGG + chr2.1:8465206-8465225 None:intergenic 40.0%
TCAAATTGTGGAACTCAGGA+AGG + chr2.1:8465520-8465539 None:intergenic 40.0%
TCTTTCATTTCTCTCCACCA+AGG - chr2.1:8464431-8464450 MS.gene028696:CDS 40.0%
TGAGATGTTGAGAAACTACG+GGG + chr2.1:8464816-8464835 None:intergenic 40.0%
TGATTGCCCAAGAAAAGGTA+TGG + chr2.1:8464294-8464313 None:intergenic 40.0%
TGTGTCAAATTGTGGAACTC+AGG + chr2.1:8465524-8465543 None:intergenic 40.0%
TTAGGCAATAAGGGTCAGAA+CGG + chr2.1:8465079-8465098 None:intergenic 40.0%
! AGAAAAGGTATGGAAGATGG+TGG + chr2.1:8464284-8464303 None:intergenic 40.0%
! CCAAGAAAAGGTATGGAAGA+TGG + chr2.1:8464287-8464306 None:intergenic 40.0%
! CCATCTTCCATACCTTTTCT+TGG - chr2.1:8464284-8464303 MS.gene028696:CDS 40.0%
! CTATGCAAAGTTGAAGGTGT+TGG + chr2.1:8464758-8464777 None:intergenic 40.0%
! GATTTGAAACAACAAGGCAC+TGG + chr2.1:8465787-8465806 None:intergenic 40.0%
!! TTGAAGGTGTTGGACTTTGT+GGG + chr2.1:8464748-8464767 None:intergenic 40.0%
!! TTGTTTTACCTCTGGTAGAC+TGG - chr2.1:8465627-8465646 MS.gene028696:intron 40.0%
!!! GAGGTGTTATTTTAATGGCG+AGG + chr2.1:8464635-8464654 None:intergenic 40.0%
!!! GGAAGTTCTTGTTTTACCTC+TGG - chr2.1:8465619-8465638 MS.gene028696:intron 40.0%
AAGAACCAACTTGCAGGCAT+GGG - chr2.1:8465970-8465989 MS.gene028696:CDS 45.0%
AAGGGTAGGGAATCGAATAC+CGG + chr2.1:8464892-8464911 None:intergenic 45.0%
CAAGCATTTCATGAACCTGG+CGG - chr2.1:8465942-8465961 MS.gene028696:CDS 45.0%
CCTCAATGTGGAAGTAGCAA+TGG + chr2.1:8465045-8465064 None:intergenic 45.0%
CTCAATAGCGCAACCGAATA+AGG + chr2.1:8465284-8465303 None:intergenic 45.0%
GATGTCAAGAACCAACTTGC+AGG - chr2.1:8465964-8465983 MS.gene028696:CDS 45.0%
GGGAGATCAAGCAGGATATA+AGG + chr2.1:8465657-8465676 None:intergenic 45.0%
TATTCGGTTGCGCTATTGAG+TGG - chr2.1:8465284-8465303 MS.gene028696:intron 45.0%
TGCATCAGCTATGGAAGTTG+GGG + chr2.1:8465204-8465223 None:intergenic 45.0%
TGCATGGGAAACACAACCAA+AGG + chr2.1:8465439-8465458 None:intergenic 45.0%
TTGACGCACAATGTTGCCTT+TGG - chr2.1:8465420-8465439 MS.gene028696:intron 45.0%
! CCATTGCTACTTCCACATTG+AGG - chr2.1:8465042-8465061 MS.gene028696:CDS 45.0%
! GACACATCTTTGTCTGGCTT+TGG - chr2.1:8465538-8465557 MS.gene028696:intron 45.0%
!! CAACAAAGTGGAGGTACTTG+TGG - chr2.1:8464478-8464497 MS.gene028696:intron 45.0%
!! GTTGAAGGTGTTGGACTTTG+TGG + chr2.1:8464749-8464768 None:intergenic 45.0%
!! TGGAAGATGGTGGACATCTT+TGG + chr2.1:8464274-8464293 None:intergenic 45.0%
!!! GGATGTTTTGACAGCATCCT+TGG + chr2.1:8464451-8464470 None:intergenic 45.0%
!!! TGTTTTGACAGCATCCTTGG+TGG + chr2.1:8464448-8464467 None:intergenic 45.0%
AACTTCCCATGCCTGCAAGT+TGG + chr2.1:8465978-8465997 None:intergenic 50.0%
CAAGAACCAACTTGCAGGCA+TGG - chr2.1:8465969-8465988 MS.gene028696:CDS 50.0%
CATCAGCTATGGAAGTTGGG+GGG + chr2.1:8465202-8465221 None:intergenic 50.0%
GCAATAAGGGTCAGAACGGA+TGG + chr2.1:8465075-8465094 None:intergenic 50.0%
GCATCAGCTATGGAAGTTGG+GGG + chr2.1:8465203-8465222 None:intergenic 50.0%
GCTTGATCTCCCCCATTTCA+AGG - chr2.1:8465665-8465684 MS.gene028696:intron 50.0%
GTAGGGAATCGAATACCGGT+AGG + chr2.1:8464888-8464907 None:intergenic 50.0%
TGAAATGGGGGAGATCAAGC+AGG + chr2.1:8465665-8465684 None:intergenic 50.0%
TGTGGAACTCAGGAAGGAGA+TGG + chr2.1:8465514-8465533 None:intergenic 50.0%
! CTTCCAGTTTGGGACACCTT+AGG + chr2.1:8465604-8465623 None:intergenic 50.0%
! TCTCCTAAGGTGTCCCAAAC+TGG - chr2.1:8465598-8465617 MS.gene028696:intron 50.0%
!! AATGGTGGACGAGTCCATTC+AGG + chr2.1:8464192-8464211 None:intergenic 50.0%
AAGGCGTACCAGTCTACCAG+AGG + chr2.1:8465638-8465657 None:intergenic 55.0%
! GTTGGTTCTTGACATCCGCC+AGG + chr2.1:8465960-8465979 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 8464186 8466038 8464186 ID=MS.gene028696
chr2.1 mRNA 8464186 8466038 8464186 ID=MS.gene028696.t1;Parent=MS.gene028696
chr2.1 exon 8465734 8466038 8465734 ID=MS.gene028696.t1.exon1;Parent=MS.gene028696.t1
chr2.1 CDS 8465734 8466038 8465734 ID=cds.MS.gene028696.t1;Parent=MS.gene028696.t1
chr2.1 exon 8464872 8465277 8464872 ID=MS.gene028696.t1.exon2;Parent=MS.gene028696.t1
chr2.1 CDS 8464872 8465277 8464872 ID=cds.MS.gene028696.t1;Parent=MS.gene028696.t1
chr2.1 exon 8464584 8464739 8464584 ID=MS.gene028696.t1.exon3;Parent=MS.gene028696.t1
chr2.1 CDS 8464584 8464739 8464584 ID=cds.MS.gene028696.t1;Parent=MS.gene028696.t1
chr2.1 exon 8464186 8464482 8464186 ID=MS.gene028696.t1.exon4;Parent=MS.gene028696.t1
chr2.1 CDS 8464186 8464482 8464186 ID=cds.MS.gene028696.t1;Parent=MS.gene028696.t1
Gene Sequence

>MS.gene028696

ATGCCTGAATGGACTCGTCCACCATTTGAATTGTTATCACAAGATTTGAACATGAGACCTAGAAAGATGAGCAGAAACATGGTGTCCAAAGATGTCCACCATCTTCCATACCTTTTCTTGGGCAATCAAGCATATCTCATCAATGAATCATTACATGAAAAGATGAAAAATCTCATCAATGAATCATCATCACCCAAAATGGAGAAAAATATTAGTGACTTACCCGATAACATTCTTCACCATATTCTTTCATTTCTCTCCACCAAGGATGCTGTCAAAACATCCATATTAGCAACAAAGTGGAGGTACTTGTGGACCCAATTATCCGTCTATGATTTTCATATTATTAGTCCTTCTCATCCTCAAAATCAAAACTCAGCAACAGCAAATTCTCTTTTAGGTTTAGTCACCACACTACTTCACAAATCTAATGTAGAAATACAAAGCCTCGCCATTAAAATAACACCTCGAGTTATTTTTGATGCACACGATCATTTTTGTCGACTATCTGTTACTCTTGATGCACGCAAACTTACTTCTTTACTATCTTCTCTACTTACCCACAAAGTCCAACACCTTCAACTTTGCATAGATGATATAAAATATCGAAATACTACTTGTGTGTTACCCCGTAGTTTCTCAACATCTCACTCATTGACTAAACTATCGTTACAACTTGGCGGCTTTACTCTATTTATTCCTACCGGTATTCGATTCCCTACCCTTAAGACTTTAAATCTTTCATATGCTACCTTTGAAAGTGACAAGTCAATTGAACAATTTTTTTCTGAGGGGTGCCCTGTCCTACAAGATTTGACTTTGAACTATTGCTATTGGTTGTACATCAAGCAGATCACCATTGCTACTTCCACATTGAGGATTTTGACCATCCGTTCTGACCCTTATTGCCTAAATTGTGATGATTTCTCTGATTTCTCAGTCAAGATTGATGATGTCAATCTTGTATCTTTAACTTGCACAAGTCATCCAACCATACAATTTATCATTGTTAACCCCCCAACTTCCATAGCTGATGCATATATTGAATTTGACATACTCCTTCCAATTACTTATTTAATGCAACATGTTTCTTCTCCTTATTCGGTTGCGCTATTGAGTGGACTTGCAAGTGTCAAGTCTCTCACAATATCAAAGGACACTTTTAGGGTATGTATTGTCTTTTTTCTCATCATCTTCATTTATCTTTTTAAATACTGTGATAATATGATGCGTATTGACGCACAATGTTGCCTTTGGTTGTGTTTCCCATGCAAGTCTATTGTTGTTTCCTTTTTCTAGGAACCTCTCTATGTAATTGATCATCTCCATCTCCTTCCTGAGTTCCACAATTTGACACATCTTTGTCTGGCTTTGGAGATTGTCGACTTCAGTAGAAAAACATTAATGGAATTTCTCCTAAGGTGTCCCAAACTGGAAGTTCTTGTTTTACCTCTGGTAGACTGGTACGCCTTATATCCTGCTTGATCTCCCCCATTTCAAGGTTAAAACAATGATATTATTTCCATCCATTGACTTGTTAATTGATTCTTATTTAGGCAGTTACCAAATTCACGGATATGAATGACTCGACATTAATTCCAGTGCCTTGTTGTTTCAAATCTTCTCTCATGATGCTTCACATTTCAATTTATGATGGATCTGATCATGGAATCCGATTCATTGAGTTTGTTTTAAAGAATGCTAGACTTTTAGAGGAGATCCAGATAACTTATTCGTCATTTTTTAGACGTTTTTACAAGCATTTCATGAACCTGGCGGATGTCAAGAACCAACTTGCAGGCATGGGAAGTTGTGATATTAAGTTTCACGAGAGAAAAATTGGGTCATGCTAA
Protein sequence

>MS.gene028696.t1

MPEWTRPPFELLSQDLNMRPRKMSRNMVSKDVHHLPYLFLGNQAYLINESLHEKMKNLINESSSPKMEKNISDLPDNILHHILSFLSTKDAVKTSILATKWSDKSIEQFFSEGCPVLQDLTLNYCYWLYIKQITIATSTLRILTIRSDPYCLNCDDFSDFSVKIDDVNLVSLTCTSHPTIQFIIVNPPTSIADAYIEFDILLPITYLMQHVSSPYSVALLSGLASVKSLTISKDTFREPLYVIDHLHLLPEFHNLTHLCLALEIVDFSRKTLMEFLLRCPKLEVLVLPLAVTKFTDMNDSTLIPVPCCFKSSLMMLHISIYDGSDHGIRFIEFVLKNARLLEEIQITYSSFFRRFYKHFMNLADVKNQLAGMGSCDIKFHERKIGSC