AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069762

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069762.t1 MTR_4g080787 67.007 294 93 2 2 293 200 491 2.13e-130 380
MS.gene069762.t1 MTR_3g048290 62.457 293 101 3 2 289 194 482 1.05e-110 329
MS.gene069762.t1 MTR_4g080773 62.126 301 111 2 2 299 200 500 3.72e-108 323
MS.gene069762.t1 MTR_4g080773 63.051 295 106 2 2 293 200 494 9.47e-107 320
MS.gene069762.t1 MTR_4g080807 64.113 248 88 1 15 261 78 325 2.19e-105 313
MS.gene069762.t1 MTR_4g080590 46.520 273 140 4 2 272 188 456 1.56e-61 202
MS.gene069762.t1 MTR_7g023330 43.396 265 138 6 9 267 137 395 6.04e-57 188
MS.gene069762.t1 MTR_5g039950 44.030 268 122 5 2 267 178 419 2.82e-56 187
MS.gene069762.t1 MTR_4g130200 39.925 268 129 2 1 267 155 391 3.05e-51 173
MS.gene069762.t1 MTR_7g023310 43.173 271 144 5 2 267 191 456 6.76e-49 169
MS.gene069762.t1 MTR_7g039630 47.826 184 92 3 2 181 160 343 7.27e-45 155
MS.gene069762.t1 MTR_4g080590 48.352 182 88 4 2 181 188 365 1.24e-34 129
MS.gene069762.t1 MTR_2g094750 46.277 188 84 7 2 177 278 460 3.24e-32 124
MS.gene069762.t1 MTR_4g081030 43.094 181 97 3 2 176 175 355 1.98e-30 118
MS.gene069762.t1 MTR_5g039970 45.185 135 70 2 2 132 188 322 7.06e-24 99.8
MS.gene069762.t1 MTR_2g094450 38.919 185 94 6 8 188 30 199 1.26e-22 93.6
MS.gene069762.t1 MTR_2g102420 44.944 89 43 2 89 177 5 87 3.32e-13 64.7
MS.gene069762.t1 MTR_8g467800 27.431 288 167 11 2 269 189 454 3.78e-13 69.7
MS.gene069762.t1 MTR_1g115250 27.755 245 161 8 20 258 205 439 5.34e-13 69.3
MS.gene069762.t1 MTR_8g062270 29.749 279 162 12 2 267 196 453 1.24e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069762.t1 AT5G44950 29.839 248 147 10 3 235 170 405 4.88e-13 69.3
MS.gene069762.t1 AT5G22660 27.711 249 156 12 2 235 175 414 2.67e-11 64.3

Find 53 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCAATTTCCACATTAA+AGG 0.206236 4.3:-32698128 MS.gene069762:CDS
GCAGCATATGGTTCACAAAT+AGG 0.254992 4.3:+32697935 None:intergenic
TTTCCAGTTTAGGAGTCTTT+AGG 0.278514 4.3:+32697559 None:intergenic
ACTACAGAGGTCAGGTTAAC+AGG 0.305488 4.3:+32697986 None:intergenic
ATGGTCAACTCTTGTAAAAC+AGG 0.333893 4.3:+32698187 None:intergenic
CTCCCAATCACAATCGTAAA+TGG 0.338696 4.3:+32698168 None:intergenic
ATCTGAAGACTTTCCAGTTT+AGG 0.339949 4.3:+32697549 None:intergenic
TCTCCTAAAGACTCCTAAAC+TGG 0.365638 4.3:-32697562 MS.gene069762:CDS
TGACCATTTACGATTGTGAT+TGG 0.375080 4.3:-32698171 MS.gene069762:CDS
TTTCACTGATGAAGTACTAA+TGG 0.381867 4.3:-32697589 MS.gene069762:CDS
AACTTGATGACACAACTCTC+TGG 0.400574 4.3:+32697172 None:intergenic
AGAGTTGTGTCATCAAGTTT+TGG 0.406463 4.3:-32697168 MS.gene069762:intron
CTGGGCCTACATCTTCCAAT+TGG 0.409999 4.3:+32697191 None:intergenic
TGATTAGGTACTTGACTACT+TGG 0.419041 4.3:-32697419 MS.gene069762:intron
CAGCATATGGTTCACAAATA+GGG 0.421631 4.3:+32697936 None:intergenic
GATTTGAAACAGCAAGGCAC+TGG 0.429593 4.3:+32697373 None:intergenic
GACCATTTACGATTGTGATT+GGG 0.440734 4.3:-32698170 MS.gene069762:CDS
TTAACAGGGATAATATCTAT+TGG 0.443705 4.3:+32698001 None:intergenic
CTTCCTGCTGCAGGTAAGAA+TGG 0.444612 4.3:-32695626 MS.gene069762:CDS
CTGGAAAGTCTTCAGATACC+TGG 0.449246 4.3:-32697543 MS.gene069762:CDS
TGTGTCAATTTGTGAAATCT+AGG 0.473639 4.3:+32697639 None:intergenic
TAGAGAAGGTGGATGATGTT+CGG 0.488207 4.3:-32697216 MS.gene069762:CDS
CACATCTTTATGTGTTTCGT+GGG 0.490448 4.3:-32697620 MS.gene069762:CDS
TTTCAGCTATTGAGTGGACT+TGG 0.495648 4.3:-32697902 MS.gene069762:CDS
GGATGATGTTCGGAACCAAT+TGG 0.501475 4.3:-32697206 MS.gene069762:CDS
TCTGCGGTGCTTCCTGCTGC+AGG 0.507012 4.3:-32695635 MS.gene069762:CDS
ACACATCTTTATGTGTTTCG+TGG 0.519038 4.3:-32697621 MS.gene069762:CDS
AATACACACTGAGCAGCATA+TGG 0.524125 4.3:+32697923 None:intergenic
ATGTATCAACTACAGAGGTC+AGG 0.533741 4.3:+32697978 None:intergenic
TGTCCATTCTTACCTGCAGC+AGG 0.534614 4.3:+32695623 None:intergenic
GATGGAGAGCATCCTTTGTA+CGG 0.548823 4.3:+32697667 None:intergenic
GATGGTTAACTCCTTTAATG+TGG 0.549610 4.3:+32698117 None:intergenic
TGTGAAATCTAGGAAGGAGA+TGG 0.559010 4.3:+32697649 None:intergenic
TGGAAAGTCTTCAGATACCT+GGG 0.564430 4.3:-32697542 MS.gene069762:CDS
CTACAGAGGTCAGGTTAACA+GGG 0.566349 4.3:+32697987 None:intergenic
GGTAAGAATGGACATGCTCT+CGG 0.568244 4.3:-32695614 MS.gene069762:CDS
AAAATAAAACGTACCACCCC+AGG 0.568996 4.3:+32697525 None:intergenic
ACTTGATGACACAACTCTCT+GGG 0.572316 4.3:+32697173 None:intergenic
TGTGTATTTCAGCTATTGAG+TGG 0.574330 4.3:-32697908 MS.gene069762:CDS
TCAATTTGTGAAATCTAGGA+AGG 0.578890 4.3:+32697643 None:intergenic
CGGAACCAATTGGAAGATGT+AGG 0.582296 4.3:-32697196 MS.gene069762:CDS
ATTTGAAACAGCAAGGCACT+GGG 0.586718 4.3:+32697374 None:intergenic
ACTATATAATAATACTCTTG+AGG 0.601018 4.3:-32697861 MS.gene069762:intron
ATCAGCTGATATAGAGAAGG+TGG 0.601354 4.3:-32697227 MS.gene069762:CDS
AGAGAAGATTTGAAACAGCA+AGG 0.601972 4.3:+32697367 None:intergenic
TTTATCAGCTGATATAGAGA+AGG 0.618952 4.3:-32697230 MS.gene069762:CDS
ACTGTAATAGTCAAAATCGA+TGG 0.624529 4.3:+32698099 None:intergenic
CTAGTGTCTTTACCGTACAA+AGG 0.625332 4.3:-32697679 MS.gene069762:intron
TGGTCAACTCTTGTAAAACA+GGG 0.649076 4.3:+32698188 None:intergenic
GTGATTGGGAGAATTTAGAG+CGG 0.667154 4.3:-32698156 MS.gene069762:CDS
AATAGATGTATCAACTACAG+AGG 0.675392 4.3:+32697973 None:intergenic
AAGTCTTCAGATACCTGGGG+TGG 0.698855 4.3:-32697538 MS.gene069762:intron
GGAAAGTCTTCAGATACCTG+GGG 0.702227 4.3:-32697541 MS.gene069762:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATGATAAATTTGA+AGG + chr4.3:32697681-32697700 None:intergenic 10.0%
!!! TTATGCTTTTTAAATTTTTA+TGG - chr4.3:32696490-32696509 MS.gene069762:intron 10.0%
!! TAAATGATTTATAGAATGTT+TGG - chr4.3:32697152-32697171 MS.gene069762:intron 15.0%
!! TAACTAATAAATTCATGTAA+AGG - chr4.3:32697352-32697371 MS.gene069762:CDS 15.0%
!! TTGATATAAAACATACATTA+AGG + chr4.3:32697564-32697583 None:intergenic 15.0%
!!! ACTGTATCAATTTATTTTAT+TGG - chr4.3:32696850-32696869 MS.gene069762:intron 15.0%
!!! ATATTTACACTTTTCATAAT+AGG - chr4.3:32698083-32698102 MS.gene069762:CDS 15.0%
!! AAAATGTACTAAGTCTATAT+TGG - chr4.3:32697469-32697488 MS.gene069762:intron 20.0%
!! AAATGTACTAAGTCTATATT+GGG - chr4.3:32697470-32697489 MS.gene069762:intron 20.0%
!! AACATATTTAAACCATAGTT+AGG - chr4.3:32697091-32697110 MS.gene069762:intron 20.0%
!! AACTATGGTTTAAATATGTT+GGG + chr4.3:32697091-32697110 None:intergenic 20.0%
!! AATAAACACAAAGAAAGAAA+TGG + chr4.3:32696709-32696728 None:intergenic 20.0%
!! ACTATATAATAATACTCTTG+AGG - chr4.3:32695966-32695985 MS.gene069762:intron 20.0%
!! TAACTATGGTTTAAATATGT+TGG + chr4.3:32697092-32697111 None:intergenic 20.0%
!! TCATTTAATCGCATATATTT+AGG + chr4.3:32697139-32697158 None:intergenic 20.0%
!!! AAGTTCTAGATTCTTTTTAA+CGG + chr4.3:32696974-32696993 None:intergenic 20.0%
!!! ATATTTTTAGTATGTGAAGT+AGG - chr4.3:32697707-32697726 MS.gene069762:intron 20.0%
!!! TCTTTCTTTGTGTTTATTTT+TGG - chr4.3:32696711-32696730 MS.gene069762:intron 20.0%
!!! TTTCATCTTACTATGAATTT+TGG - chr4.3:32697018-32697037 MS.gene069762:intron 20.0%
! AAATCTGAAAGAACTAATCT+AGG + chr4.3:32697764-32697783 None:intergenic 25.0%
! AAATTGATACAGTTCACAAA+GGG + chr4.3:32696843-32696862 None:intergenic 25.0%
! AACATTGTCATTAGGTATTA+TGG + chr4.3:32696052-32696071 None:intergenic 25.0%
! ATAATACCTAATGACAATGT+TGG - chr4.3:32696051-32696070 MS.gene069762:intron 25.0%
! ATAATAGGATAATTTCTCAC+TGG - chr4.3:32698098-32698117 MS.gene069762:CDS 25.0%
! ATGTTTAGTGATTCTTGATT+AGG - chr4.3:32696393-32696412 MS.gene069762:intron 25.0%
! CATTCCATAATATAAATGTG+TGG - chr4.3:32696761-32696780 MS.gene069762:intron 25.0%
! GATTTATAGAATGTTTGGTT+GGG - chr4.3:32697157-32697176 MS.gene069762:intron 25.0%
! TAAATTGATACAGTTCACAA+AGG + chr4.3:32696844-32696863 None:intergenic 25.0%
! TCAACCACACATTTATATTA+TGG + chr4.3:32696768-32696787 None:intergenic 25.0%
! TGATTTATAGAATGTTTGGT+TGG - chr4.3:32697156-32697175 MS.gene069762:intron 25.0%
! TGTTTCAATTTCCACATTAA+AGG - chr4.3:32695699-32695718 MS.gene069762:intron 25.0%
! TTAAAAAATGCCCCATATTT+GGG - chr4.3:32696547-32696566 MS.gene069762:intron 25.0%
! TTAACAGGGATAATATCTAT+TGG + chr4.3:32695829-32695848 None:intergenic 25.0%
!! TAGATTAGTTCTTTCAGATT+TGG - chr4.3:32697763-32697782 MS.gene069762:intron 25.0%
!!! ACTTTTCTTTTGATTTGACT+TGG - chr4.3:32697851-32697870 MS.gene069762:intron 25.0%
!!! CTTTTCTTTTGATTTGACTT+GGG - chr4.3:32697852-32697871 MS.gene069762:intron 25.0%
!!! TACTATGAATTTTGGAAAAC+TGG - chr4.3:32697026-32697045 MS.gene069762:intron 25.0%
AACAACTCTAAACACTTAGA+CGG + chr4.3:32696903-32696922 None:intergenic 30.0%
AATAGATGTATCAACTACAG+AGG + chr4.3:32695857-32695876 None:intergenic 30.0%
AATGGAAACAAAATCACGTT+AGG + chr4.3:32696127-32696146 None:intergenic 30.0%
ACTGTAATAGTCAAAATCGA+TGG + chr4.3:32695731-32695750 None:intergenic 30.0%
CAACAATGAAAAGCAAAAGA+CGG + chr4.3:32697898-32697917 None:intergenic 30.0%
CTGGTAATTGTCATATTTCA+AGG - chr4.3:32696336-32696355 MS.gene069762:intron 30.0%
CTTAAAAAATGCCCCATATT+TGG - chr4.3:32696546-32696565 MS.gene069762:intron 30.0%
TAAAAAATGCCCCATATTTG+GGG - chr4.3:32696548-32696567 MS.gene069762:intron 30.0%
TAGATGTTGGAACACTTAAA+CGG - chr4.3:32697265-32697284 MS.gene069762:CDS 30.0%
TCAATTTGTGAAATCTAGGA+AGG + chr4.3:32696187-32696206 None:intergenic 30.0%
TGACATACCAAAACATAACA+CGG - chr4.3:32696941-32696960 MS.gene069762:intron 30.0%
TGTGTCAATTTGTGAAATCT+AGG + chr4.3:32696191-32696210 None:intergenic 30.0%
TTAAAGCCAACATTGTCATT+AGG + chr4.3:32696060-32696079 None:intergenic 30.0%
TTTATCAGCTGATATAGAGA+AGG - chr4.3:32696597-32696616 MS.gene069762:intron 30.0%
! TTTCACTGATGAAGTACTAA+TGG - chr4.3:32696238-32696257 MS.gene069762:intron 30.0%
!! TCTTTTGCTTTTCATTGTTG+CGG - chr4.3:32697898-32697917 MS.gene069762:CDS 30.0%
AAAAAATGCCCCATATTTGG+GGG - chr4.3:32696549-32696568 MS.gene069762:intron 35.0%
AATATGACAATTACCAGCAC+TGG + chr4.3:32696333-32696352 None:intergenic 35.0%
ACACATCTTTATGTGTTTCG+TGG - chr4.3:32696206-32696225 MS.gene069762:intron 35.0%
AGAGATACACACTTAAACGT+GGG - chr4.3:32697291-32697310 MS.gene069762:CDS 35.0%
AGATGTGTGTGTGATTATAG+AGG - chr4.3:32697940-32697959 MS.gene069762:CDS 35.0%
ATCTGAAGACTTTCCAGTTT+AGG + chr4.3:32696281-32696300 None:intergenic 35.0%
ATGGTCAACTCTTGTAAAAC+AGG + chr4.3:32695643-32695662 None:intergenic 35.0%
ATGTGTGTGTGATTATAGAG+GGG - chr4.3:32697942-32697961 MS.gene069762:CDS 35.0%
CACATCTTTATGTGTTTCGT+GGG - chr4.3:32696207-32696226 MS.gene069762:intron 35.0%
CACTCAATCATACCTAACTA+TGG + chr4.3:32697106-32697125 None:intergenic 35.0%
CAGCATATGGTTCACAAATA+GGG + chr4.3:32695894-32695913 None:intergenic 35.0%
GACCATTTACGATTGTGATT+GGG - chr4.3:32695657-32695676 MS.gene069762:intron 35.0%
GATGGTTAACTCCTTTAATG+TGG + chr4.3:32695713-32695732 None:intergenic 35.0%
GATGTGTGTGTGATTATAGA+GGG - chr4.3:32697941-32697960 MS.gene069762:CDS 35.0%
GTGTTCCAACATCTAAGTAT+TGG + chr4.3:32697260-32697279 None:intergenic 35.0%
TACGGTAAAGACACTAGTAA+TGG + chr4.3:32696145-32696164 None:intergenic 35.0%
TGACCATTTACGATTGTGAT+TGG - chr4.3:32695656-32695675 MS.gene069762:intron 35.0%
TGATTAGGTACTTGACTACT+TGG - chr4.3:32696408-32696427 MS.gene069762:intron 35.0%
TGGTCAACTCTTGTAAAACA+GGG + chr4.3:32695642-32695661 None:intergenic 35.0%
TGTGTATTTCAGCTATTGAG+TGG - chr4.3:32695919-32695938 MS.gene069762:intron 35.0%
TTGTCTTTCAAACTTCAGCT+AGG - chr4.3:32696992-32697011 MS.gene069762:intron 35.0%
TTTCATTGTTGCGGACATAT+GGG - chr4.3:32697907-32697926 MS.gene069762:CDS 35.0%
TTTCCAGTTTAGGAGTCTTT+AGG + chr4.3:32696271-32696290 None:intergenic 35.0%
TTTGGCCAATACTTAGATGT+TGG - chr4.3:32697252-32697271 MS.gene069762:CDS 35.0%
! AGAGAAGATTTGAAACAGCA+AGG + chr4.3:32696463-32696482 None:intergenic 35.0%
! AGAGTTGTGTCATCAAGTTT+TGG - chr4.3:32696659-32696678 MS.gene069762:intron 35.0%
! GTCAGTTCAACAACTTTTCT+CGG - chr4.3:32695612-32695631 MS.gene069762:CDS 35.0%
! TCAGTTCAACAACTTTTCTC+GGG - chr4.3:32695613-32695632 MS.gene069762:CDS 35.0%
! TGACTACTATCGCTAGTTTA+TGG - chr4.3:32696811-32696830 MS.gene069762:intron 35.0%
! TTTTCATTGTTGCGGACATA+TGG - chr4.3:32697906-32697925 MS.gene069762:CDS 35.0%
!! TAACTTTTGCTGTGGTTTTC+AGG - chr4.3:32698161-32698180 MS.gene069762:CDS 35.0%
!! TTTATTTTCTTCACCAGTGC+TGG - chr4.3:32696317-32696336 MS.gene069762:intron 35.0%
!! TTTTCAGGCTTCAAATTCTG+CGG - chr4.3:32698176-32698195 MS.gene069762:CDS 35.0%
AAAATAAAACGTACCACCCC+AGG + chr4.3:32696305-32696324 None:intergenic 40.0%
AATACACACTGAGCAGCATA+TGG + chr4.3:32695907-32695926 None:intergenic 40.0%
ATCAGCTGATATAGAGAAGG+TGG - chr4.3:32696600-32696619 MS.gene069762:intron 40.0%
ATCTTGATCTCCCCCAAATA+TGG + chr4.3:32696562-32696581 None:intergenic 40.0%
ATGTATCAACTACAGAGGTC+AGG + chr4.3:32695852-32695871 None:intergenic 40.0%
ATTGGACAAACTCTGTTTGC+TGG - chr4.3:32696868-32696887 MS.gene069762:intron 40.0%
CCAAAACATAACACGGTCTT+TGG - chr4.3:32696948-32696967 MS.gene069762:intron 40.0%
CTAGTGTCTTTACCGTACAA+AGG - chr4.3:32696148-32696167 MS.gene069762:intron 40.0%
CTCCCAATCACAATCGTAAA+TGG + chr4.3:32695662-32695681 None:intergenic 40.0%
GAATGTTTGGTTGGGTCTTT+AGG - chr4.3:32697165-32697184 MS.gene069762:intron 40.0%
GAGAGATACACACTTAAACG+TGG - chr4.3:32697290-32697309 MS.gene069762:CDS 40.0%
GCAGCATATGGTTCACAAAT+AGG + chr4.3:32695895-32695914 None:intergenic 40.0%
GCTAACCGACTATTTGAACT+CGG + chr4.3:32697423-32697442 None:intergenic 40.0%
GCTATCCGAGTTCAAATAGT+CGG - chr4.3:32697415-32697434 MS.gene069762:CDS 40.0%
GTGATTGGGAGAATTTAGAG+CGG - chr4.3:32695671-32695690 MS.gene069762:intron 40.0%
GTTAGGTATGATTGAGTGCT+CGG - chr4.3:32697108-32697127 MS.gene069762:intron 40.0%
TAGAGAAGGTGGATGATGTT+CGG - chr4.3:32696611-32696630 MS.gene069762:intron 40.0%
TCTCCTAAAGACTCCTAAAC+TGG - chr4.3:32696265-32696284 MS.gene069762:intron 40.0%
TCTTGATCTCCCCCAAATAT+GGG + chr4.3:32696561-32696580 None:intergenic 40.0%
TCTTTCAAACTTCAGCTAGG+TGG - chr4.3:32696995-32697014 MS.gene069762:intron 40.0%
TGAAAAGCAAAAGACGGTTG+AGG + chr4.3:32697892-32697911 None:intergenic 40.0%
TGCTTATGATCTCAAGCAAG+TGG + chr4.3:32697496-32697515 None:intergenic 40.0%
TGGAAAGTCTTCAGATACCT+GGG - chr4.3:32696285-32696304 MS.gene069762:intron 40.0%
TGTGAAATCTAGGAAGGAGA+TGG + chr4.3:32696181-32696200 None:intergenic 40.0%
TTCATTGTTGCGGACATATG+GGG - chr4.3:32697908-32697927 MS.gene069762:CDS 40.0%
TTGGACAAACTCTGTTTGCT+GGG - chr4.3:32696869-32696888 MS.gene069762:intron 40.0%
! AAACTCTGTTTGCTGGGAAT+TGG - chr4.3:32696875-32696894 MS.gene069762:intron 40.0%
! AACTTGATGACACAACTCTC+TGG + chr4.3:32696658-32696677 None:intergenic 40.0%
! ACATAGTGGAGAGGAAACTT+AGG - chr4.3:32697204-32697223 MS.gene069762:CDS 40.0%
! ACTTGATGACACAACTCTCT+GGG + chr4.3:32696657-32696676 None:intergenic 40.0%
! ATTTGAAACAGCAAGGCACT+GGG + chr4.3:32696456-32696475 None:intergenic 40.0%
! CAGTTCAACAACTTTTCTCG+GGG - chr4.3:32695614-32695633 MS.gene069762:CDS 40.0%
! CCAAAGACCGTGTTATGTTT+TGG + chr4.3:32696951-32696970 None:intergenic 40.0%
! GGTAATGCAAGTTGAACTTG+AGG - chr4.3:32697373-32697392 MS.gene069762:CDS 40.0%
! GTGTTTGGAACAAGTTTCAC+AGG - chr4.3:32697806-32697825 MS.gene069762:intron 40.0%
! TTTCAGCTATTGAGTGGACT+TGG - chr4.3:32695925-32695944 MS.gene069762:intron 40.0%
!! GCTTTAAGATACAGGGTGTT+TGG - chr4.3:32697791-32697810 MS.gene069762:intron 40.0%
!! GGTTGCTGCTTTAAGATACA+GGG - chr4.3:32697784-32697803 MS.gene069762:intron 40.0%
!! TGGTTGCTGCTTTAAGATAC+AGG - chr4.3:32697783-32697802 MS.gene069762:intron 40.0%
ACACTTTCCACACAGGAACT+GGG + chr4.3:32697318-32697337 None:intergenic 45.0%
ACTACAGAGGTCAGGTTAAC+AGG + chr4.3:32695844-32695863 None:intergenic 45.0%
AGTATGCTTAAGCGTGGCTT+TGG - chr4.3:32697234-32697253 MS.gene069762:CDS 45.0%
ATGTCATAGTGTGCGAGCTT+AGG + chr4.3:32697068-32697087 None:intergenic 45.0%
CCACAGCAAAAGTTAGACCA+AGG + chr4.3:32698156-32698175 None:intergenic 45.0%
CGGAACCAATTGGAAGATGT+AGG - chr4.3:32696631-32696650 MS.gene069762:intron 45.0%
CTACAGAGGTCAGGTTAACA+GGG + chr4.3:32695843-32695862 None:intergenic 45.0%
CTGGAAAGTCTTCAGATACC+TGG - chr4.3:32696284-32696303 MS.gene069762:intron 45.0%
CTTGATCTCCCCCAAATATG+GGG + chr4.3:32696560-32696579 None:intergenic 45.0%
GGAAAGTCTTCAGATACCTG+GGG - chr4.3:32696286-32696305 MS.gene069762:intron 45.0%
GGATGATGTTCGGAACCAAT+TGG - chr4.3:32696621-32696640 MS.gene069762:intron 45.0%
GGTAAGAATGGACATGCTCT+CGG - chr4.3:32698213-32698232 MS.gene069762:CDS 45.0%
GTGGAACACATTGAATGCCT+TGG - chr4.3:32698136-32698155 MS.gene069762:CDS 45.0%
TCATTGTTGCGGACATATGG+GGG - chr4.3:32697909-32697928 MS.gene069762:CDS 45.0%
TGTCATAGTGTGCGAGCTTA+GGG + chr4.3:32697067-32697086 None:intergenic 45.0%
TTCAGCAGTATGCTTAAGCG+TGG - chr4.3:32697228-32697247 MS.gene069762:CDS 45.0%
! AGTTCCTGTGTGGAAAGTGT+GGG - chr4.3:32697318-32697337 MS.gene069762:CDS 45.0%
! CCTTGGTCTAACTTTTGCTG+TGG - chr4.3:32698153-32698172 MS.gene069762:CDS 45.0%
! CTGGCTGTTTCATTGTTACG+TGG - chr4.3:32698117-32698136 MS.gene069762:CDS 45.0%
! GATTTGAAACAGCAAGGCAC+TGG + chr4.3:32696457-32696476 None:intergenic 45.0%
!! CTTTAGGATCGTGTGGAGTA+TGG - chr4.3:32697181-32697200 MS.gene069762:CDS 45.0%
!! GATGGAGAGCATCCTTTGTA+CGG + chr4.3:32696163-32696182 None:intergenic 45.0%
AAGTCTTCAGATACCTGGGG+TGG - chr4.3:32696289-32696308 MS.gene069762:intron 50.0%
ATAGTGTGCGAGCTTAGGGT+GGG + chr4.3:32697063-32697082 None:intergenic 50.0%
CACACTTTCCACACAGGAAC+TGG + chr4.3:32697319-32697338 None:intergenic 50.0%
CAGTTCCTGTGTGGAAAGTG+TGG - chr4.3:32697317-32697336 MS.gene069762:CDS 50.0%
CATTGTTGCGGACATATGGG+GGG - chr4.3:32697910-32697929 MS.gene069762:CDS 50.0%
CGTGTGGAGTATGGACATAG+TGG - chr4.3:32697190-32697209 MS.gene069762:CDS 50.0%
CTGGGCCTACATCTTCCAAT+TGG + chr4.3:32696639-32696658 None:intergenic 50.0%
CTTCCTGCTGCAGGTAAGAA+TGG - chr4.3:32698201-32698220 MS.gene069762:CDS 50.0%
TGTCCATTCTTACCTGCAGC+AGG + chr4.3:32698207-32698226 None:intergenic 50.0%
! GGAGTATGGACATAGTGGAG+AGG - chr4.3:32697195-32697214 MS.gene069762:CDS 50.0%
!! GTTGGGTCTTTAGGATCGTG+TGG - chr4.3:32697174-32697193 MS.gene069762:CDS 50.0%
ACCTCCCACACTTTCCACAC+AGG + chr4.3:32697325-32697344 None:intergenic 55.0%
CATAGTGTGCGAGCTTAGGG+TGG + chr4.3:32697064-32697083 None:intergenic 55.0%
TAGTGTGCGAGCTTAGGGTG+GGG + chr4.3:32697062-32697081 None:intergenic 55.0%
TGCGGACATATGGGGGGATT+TGG - chr4.3:32697916-32697935 MS.gene069762:CDS 55.0%
! TCCTGTGTGGAAAGTGTGGG+AGG - chr4.3:32697321-32697340 MS.gene069762:CDS 55.0%
AGTGTGCGAGCTTAGGGTGG+GGG + chr4.3:32697061-32697080 None:intergenic 60.0%
CGTGGGTCCCAGTTCCTGTG+TGG - chr4.3:32697308-32697327 MS.gene069762:CDS 65.0%
TCTGCGGTGCTTCCTGCTGC+AGG - chr4.3:32698192-32698211 MS.gene069762:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 32695610 32698239 32695610 ID=MS.gene069762
chr4.3 mRNA 32695610 32698239 32695610 ID=MS.gene069762.t1;Parent=MS.gene069762
chr4.3 exon 32697862 32698239 32697862 ID=MS.gene069762.t1.exon1;Parent=MS.gene069762.t1
chr4.3 CDS 32697862 32698239 32697862 ID=cds.MS.gene069762.t1;Parent=MS.gene069762.t1
chr4.3 exon 32697539 32697697 32697539 ID=MS.gene069762.t1.exon2;Parent=MS.gene069762.t1
chr4.3 CDS 32697539 32697697 32697539 ID=cds.MS.gene069762.t1;Parent=MS.gene069762.t1
chr4.3 exon 32697169 32697434 32697169 ID=MS.gene069762.t1.exon3;Parent=MS.gene069762.t1
chr4.3 CDS 32697169 32697434 32697169 ID=cds.MS.gene069762.t1;Parent=MS.gene069762.t1
chr4.3 exon 32695776 32695821 32695776 ID=MS.gene069762.t1.exon4;Parent=MS.gene069762.t1
chr4.3 CDS 32695776 32695821 32695776 ID=cds.MS.gene069762.t1;Parent=MS.gene069762.t1
chr4.3 exon 32695610 32695666 32695610 ID=MS.gene069762.t1.exon5;Parent=MS.gene069762.t1
chr4.3 CDS 32695610 32695666 32695610 ID=cds.MS.gene069762.t1;Parent=MS.gene069762.t1
Gene Sequence

>MS.gene069762

ATGTCAGTTCAACAACTTTTCTCGGGGTGCCCTGTTTTACAAGAGTTGACCATTTACGATTGTGATTGGGAGAATTTAGAGCGGATCACTGTTTCAATTTCCACATTAAAGGAGTTAACCATCGATTTTGACTATTACAGTGTTGATTATGATCATCATATGAAACTCATGATTGATGCTGTGAATCTTTTATCGTTAAGTTGCACATGCAGTCAACCAATAGATATTATCCCTGTTAACCTGACCTCTGTAGTTGATACATCTATTGATTTTGAGTATCACCCTATTTGTGAACCATATGCTGCTCAGTGTGTATTTCAGCTATTGAGTGGACTTGGTAGTGTTCAGTCTCTCACACTATATAATAATACTCTTGAGGTATGTTTGCTTATTTGCTCGTCATCTTCATGTTTTTTTTTTTTTTTTAAAATATTGTATACCATAATACCTAATGACAATGTTGGCTTTAATTATTCGTTTCTTGTAATCATTGCATATTTTCTGAATCGCAGTACCTAACGTGATTTTGTTTCCATTACTAGTGTCTTTACCGTACAAAGGATGCTCTCCATCTCCTTCCTAGATTTCACAAATTGACACATCTTTATGTGTTTCGTGGGAGTTTCGATTTCACTGATGAAGTACTAATGGAAATTCTCCTAAAGACTCCTAAACTGGAAAGTCTTCAGATACCTGGGGTGGTACGTTTTATTTTCTTCACCAGTGCTGGTAATTGTCATATTTCAAGGCTAACAATCTTGAGAATCACTTCTGTTAATTGACATGTTTAGTGATTCTTGATTAGGTACTTGACTACTTGGATGATGAAGATTTGATATTGAACCCAGTGCCTTGCTGTTTCAAATCTTCTCTCAATCGATTATGCTTTTTAAATTTTTATGGAAATGAAGATGAAATTGAATTCGTTATGTTTATCTTAAAAAATGCCCCATATTTGGGGGAGATCAAGATATACTGTTCGAGACATTTATCAGCTGATATAGAGAAGGTGGATGATGTTCGGAACCAATTGGAAGATGTAGGCCCAGAGAGTTGTGTCATCAAGTTTTGGTAAATAATCTTTCTTTTCTTCTCTCCATTTCTTTCTTTGTGTTTATTTTTGGAATTGAATCAGTTTACTAATTTAACTTCATTCCATAATATAAATGTGTGGTTGATGAAATAAATAGCTTCACTAGTATGACTACTATCGCTAGTTTATGGAGTATGCCCTTTGTGAACTGTATCAATTTATTTTATTGGACAAACTCTGTTTGCTGGGAATTGGAACCGTCTAAGTGTTTAGAGTTGTTGTTCTTACTTTTTACACTTGACATACCAAAACATAACACGGTCTTTGGCCGTTAAAAAGAATCTAGAACTTGTCTTTCAAACTTCAGCTAGGTGGTTTCATCTTACTATGAATTTTGGAAAACTGGTTCATTGTACCCCCACCCTAAGCTCGCACACTATGACATCCCAACATATTTAAACCATAGTTAGGTATGATTGAGTGCTCGGTGAAGCCTAAATATATGCGATTAAATGATTTATAGAATGTTTGGTTGGGTCTTTAGGATCGTGTGGAGTATGGACATAGTGGAGAGGAAACTTAGGTTTCAGCAGTATGCTTAAGCGTGGCTTTGGCCAATACTTAGATGTTGGAACACTTAAACGGCAGAGAGATACACACTTAAACGTGGGTCCCAGTTCCTGTGTGGAAAGTGTGGGAGGTTTGATTATAACTAATAAATTCATGTAAAGGTAATGCAAGTTGAACTTGAGGTAATGTATTAGTTGTTTTAGCTATCCGAGTTCAAATAGTCGGTTAGCTAGTACTTCAAAATTATTTATTCTTCAAAATGTACTAAGTCTATATTGGGCCACTTGCTTGAGATCATAAGCAAAACTTTAATGTTGACTTGATTGACATGAAAGCTAATTCAAAATTCCTTAATGTATGTTTTATATCAAGTATCAACATAATCTCTTAAAGCTCTTTTTAAGTAATATCACTACTTTTTTATTTCTTAAAACTAGAGACTTTTGTACTATTTTCTTTGTGTTACCTTCAAATTTATCATAATAATAATAATAATATTTTTAGTATGTGAAGTAGGTTTTTATACTATGATCTTTTCAAGATATGAGCCTAGATTAGTTCTTTCAGATTTGGTTGCTGCTTTAAGATACAGGGTGTTTGGAACAAGTTTCACAGGAATAAGAACTGTTTAAATTTCAACTTTTCTTTTGATTTGACTTGGGAATGATTCGTTTTGCCTCAACCGTCTTTTGCTTTTCATTGTTGCGGACATATGGGGGGATTTGGAAGATGTGTGTGTGATTATAGAGGGGTTTGAGATCTTCATTCTGAAAGTATATTGATCTGCTAACTGTTATTTGTTTTCACTGTTTCAGTTACAGCTACTATGAACAATCTGACGATGAATCTGATGAAGATGAAGTGAGTAAAATATTTACACTTTTCATAATAGGATAATTTCTCACTGGCTGTTTCATTGTTACGTGGAACACATTGAATGCCTTGGTCTAACTTTTGCTGTGGTTTTCAGGCTTCAAATTCTGCGGTGCTTCCTGCTGCAGGTAAGAATGGACATGCTCTCGGCTGA
Protein sequence

>MS.gene069762.t1

MSVQQLFSGCPVLQELTIYDCDWENLERITVSISTLKELTIDFDYYSVDYDHHMKLMIDAVNLLSLSCTCSQPIDIIPVNLTSVVDTSIDFEYHPICEPYAAQCVFQLLSGLGSVQSLTLYNNTLECLYRTKDALHLLPRFHKLTHLYVFRGSFDFTDEVLMEILLKTPKLESLQIPGVVLDYLDDEDLILNPVPCCFKSSLNRLCFLNFYGNEDEIEFVMFILKNAPYLGEIKIYCSRHLSADIEKVDDVRNQLEDVGPESCVIKFCYSYYEQSDDESDEDEASNSAVLPAAGKNGHALG