AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031603


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031603.t1 MTR_3g048290 57.278 316 126 4 1 313 5 314 7.73e-109 326
MS.gene031603.t1 MTR_4g080787 55.927 329 120 7 3 318 6 322 1.73e-103 313
MS.gene031603.t1 MTR_4g080773 54.711 329 127 6 3 318 6 325 1.21e-99 303
MS.gene031603.t1 MTR_5g039970 52.083 336 150 5 1 332 1 329 1.67e-99 297
MS.gene031603.t1 MTR_4g080773 54.711 329 127 6 3 318 6 325 1.71e-99 303
MS.gene031603.t1 MTR_4g080590 49.091 330 150 5 1 326 5 320 9.88e-88 268
MS.gene031603.t1 MTR_4g080590 49.091 330 150 5 1 326 5 320 1.33e-86 268
MS.gene031603.t1 MTR_7g023310 51.399 286 124 6 1 278 5 283 3.67e-80 251
MS.gene031603.t1 MTR_5g039950 47.040 321 119 5 1 318 5 277 8.83e-80 249
MS.gene031603.t1 MTR_2g094750 46.061 330 153 9 17 323 88 415 2.13e-77 245
MS.gene031603.t1 MTR_7g039630 45.171 321 135 3 1 318 5 287 5.31e-76 237
MS.gene031603.t1 MTR_4g081030 44.620 316 147 8 9 318 7 300 1.83e-65 211
MS.gene031603.t1 MTR_7g023330 41.925 322 116 6 2 318 3 258 6.22e-64 208
MS.gene031603.t1 MTR_4g130200 41.066 319 114 6 1 318 5 250 1.48e-59 196
MS.gene031603.t1 MTR_4g080807 45.492 244 92 4 89 332 1 203 1.60e-52 179
MS.gene031603.t1 MTR_4g080813 62.651 83 28 2 1 80 1 83 1.38e-26 101
MS.gene031603.t1 MTR_1g082260 36.129 155 96 1 72 223 23 177 2.05e-24 98.6
MS.gene031603.t1 MTR_5g080710 31.455 213 134 4 19 226 33 238 1.27e-19 89.7
MS.gene031603.t1 MTR_2g094450 55.814 86 37 1 194 278 31 116 2.32e-19 85.1
MS.gene031603.t1 MTR_5g005690 27.876 226 152 4 7 226 5 225 1.38e-17 84.0
MS.gene031603.t1 MTR_8g066650 29.231 325 192 10 12 323 73 372 2.72e-17 82.8
MS.gene031603.t1 MTR_4g032730 26.332 319 192 10 10 311 4 296 3.24e-16 79.7
MS.gene031603.t1 MTR_5g038430 30.804 224 141 7 10 226 87 303 3.66e-16 79.7
MS.gene031603.t1 MTR_2g082850 31.076 251 138 11 1 229 1 238 7.80e-16 78.2
MS.gene031603.t1 MTR_2g005990 30.542 203 121 5 19 205 6 204 1.38e-15 77.4
MS.gene031603.t1 MTR_5g073340 33.514 185 91 7 19 201 8 162 5.83e-15 74.7
MS.gene031603.t1 MTR_0049s0110 30.631 222 137 9 19 233 8 219 6.65e-15 74.3
MS.gene031603.t1 MTR_8g467800 25.776 322 211 8 10 322 11 313 9.65e-15 74.7
MS.gene031603.t1 MTR_0049s0110 32.632 190 116 7 19 203 8 190 1.13e-14 74.3
MS.gene031603.t1 MTR_3g108560 29.319 191 121 6 13 201 14 192 1.13e-14 73.9
MS.gene031603.t1 MTR_0049s0110 32.632 190 116 7 19 203 8 190 1.49e-14 73.9
MS.gene031603.t1 MTR_0049s0110 30.631 222 137 9 19 233 8 219 1.99e-14 74.3
MS.gene031603.t1 MTR_3g108560 29.319 191 121 6 13 201 14 192 2.01e-14 73.9
MS.gene031603.t1 MTR_5g084070 31.250 208 131 3 19 224 13 210 3.82e-14 73.2
MS.gene031603.t1 MTR_8g467800 25.472 318 209 8 10 318 11 309 3.86e-14 73.6
MS.gene031603.t1 MTR_1g038710 26.129 310 201 10 19 317 19 311 4.62e-14 73.2
MS.gene031603.t1 MTR_3g110010 27.052 329 202 10 18 338 12 310 5.66e-14 73.2
MS.gene031603.t1 MTR_3g109982 27.052 329 202 10 18 338 12 310 8.99e-14 72.8
MS.gene031603.t1 MTR_3g023470 28.440 327 203 13 8 323 2 308 1.75e-13 71.2
MS.gene031603.t1 MTR_7g088260 32.212 208 106 7 13 205 85 272 1.86e-13 71.2
MS.gene031603.t1 MTR_6g025160 25.283 265 183 5 1 262 83 335 1.94e-13 70.9
MS.gene031603.t1 MTR_1g115245 26.606 218 147 4 10 224 17 224 2.14e-13 70.1
MS.gene031603.t1 MTR_3g036250 28.421 190 122 5 19 201 5 187 2.49e-13 70.5
MS.gene031603.t1 MTR_2g007500 30.151 199 120 5 19 213 14 197 2.96e-13 70.1
MS.gene031603.t1 MTR_8g445780 30.693 202 123 8 11 203 6 199 3.24e-13 70.5
MS.gene031603.t1 MTR_7g116580 27.907 301 161 10 17 280 1 282 3.32e-13 70.5
MS.gene031603.t1 MTR_1g090883 25.240 313 210 7 11 317 11 305 5.33e-13 69.7
MS.gene031603.t1 MTR_7g007080 29.167 192 123 4 18 201 3 189 6.04e-13 69.7
MS.gene031603.t1 MTR_4g119700 30.093 216 119 8 18 206 5 215 1.51e-12 68.9
MS.gene031603.t1 MTR_7g056447 30.049 203 132 5 18 217 8 203 1.52e-12 67.8
MS.gene031603.t1 MTR_3g023630 28.877 187 123 5 19 201 8 188 1.64e-12 68.2
MS.gene031603.t1 MTR_3g023270 27.778 216 112 6 10 206 3 193 1.69e-12 68.2
MS.gene031603.t1 MTR_2g082860 46.341 82 41 2 7 87 14 93 2.28e-12 63.5
MS.gene031603.t1 MTR_8g017280 30.469 128 72 4 18 138 35 152 2.74e-12 67.0
MS.gene031603.t1 MTR_8g017280 30.469 128 72 4 18 138 35 152 3.02e-12 67.4
MS.gene031603.t1 MTR_3g105060 31.016 187 118 5 19 201 14 193 3.57e-12 67.0
MS.gene031603.t1 MTR_1g115250 29.583 240 137 10 7 222 20 251 3.60e-12 67.4
MS.gene031603.t1 MTR_2g008310 29.798 198 120 4 19 208 2 188 3.94e-12 67.0
MS.gene031603.t1 MTR_4g050930 24.286 350 209 14 6 337 16 327 4.14e-12 67.0
MS.gene031603.t1 MTR_8g058965 27.304 293 176 12 10 278 4 283 4.21e-12 67.4
MS.gene031603.t1 MTR_7g084080 26.538 260 164 8 13 260 11 255 5.24e-12 65.9
MS.gene031603.t1 MTR_4g092980 24.444 315 207 9 21 323 16 311 5.55e-12 67.0
MS.gene031603.t1 MTR_7g056433 29.648 199 118 5 16 203 9 196 7.67e-12 66.2
MS.gene031603.t1 MTR_5g007410 31.429 210 119 8 21 215 28 227 8.16e-12 66.2
MS.gene031603.t1 MTR_5g045510 30.435 184 119 5 21 201 14 191 8.22e-12 65.9
MS.gene031603.t1 MTR_4g050930 24.286 350 209 14 6 337 16 327 8.49e-12 66.2
MS.gene031603.t1 MTR_5g021550 35.484 124 67 5 18 131 18 138 1.06e-11 62.8
MS.gene031603.t1 MTR_0492s0020 30.481 187 114 8 18 201 85 258 1.06e-11 65.9
MS.gene031603.t1 MTR_0543s0010 30.481 187 114 8 18 201 85 258 1.17e-11 65.9
MS.gene031603.t1 MTR_8g014160 29.851 201 119 8 18 201 40 235 1.18e-11 65.9
MS.gene031603.t1 MTR_1g011430 29.870 231 133 10 19 237 7 220 1.19e-11 65.5
MS.gene031603.t1 MTR_2g007360 26.667 270 129 9 19 271 12 229 1.27e-11 65.5
MS.gene031603.t1 MTR_3g108150 30.811 185 119 5 18 201 12 188 1.37e-11 65.5
MS.gene031603.t1 MTR_7g025650 28.704 216 122 7 18 206 18 228 1.38e-11 65.9
MS.gene031603.t1 MTR_8g077460 29.469 207 115 7 18 203 9 205 1.62e-11 65.1
MS.gene031603.t1 MTR_8g014260 28.308 325 178 17 18 316 15 310 1.75e-11 65.5
MS.gene031603.t1 MTR_2g007530 40.909 88 49 1 19 103 19 106 2.87e-11 64.3
MS.gene031603.t1 MTR_3g026920 29.018 224 129 8 19 224 19 230 2.88e-11 64.7
MS.gene031603.t1 MTR_2g082800 28.319 226 148 6 8 228 18 234 2.90e-11 64.7
MS.gene031603.t1 MTR_3g023440 26.791 321 194 13 17 323 1 294 3.08e-11 64.3
MS.gene031603.t1 MTR_7g055943 27.358 212 145 4 19 226 40 246 3.37e-11 64.3
MS.gene031603.t1 MTR_8g062270 29.064 203 126 4 16 203 13 212 3.83e-11 64.3
MS.gene031603.t1 MTR_5g058000 28.571 196 111 5 19 201 8 187 3.98e-11 63.9
MS.gene031603.t1 MTR_3g019220 26.205 332 204 12 18 335 25 329 4.36e-11 64.3
MS.gene031603.t1 MTR_2g007450 27.053 207 121 5 19 201 16 216 4.71e-11 63.9
MS.gene031603.t1 MTR_0227s0010 28.571 203 129 8 10 203 6 201 5.25e-11 63.5
MS.gene031603.t1 MTR_5g092960 24.620 329 225 8 1 316 1 319 5.99e-11 63.5
MS.gene031603.t1 MTR_4g051480 25.726 241 154 10 1 228 9 237 6.47e-11 63.9
MS.gene031603.t1 MTR_4g092300 25.726 241 154 10 1 228 9 237 6.60e-11 63.9
MS.gene031603.t1 MTR_3g036320 25.000 316 203 12 21 323 22 316 7.19e-11 63.2
MS.gene031603.t1 MTR_1g038760 28.054 221 131 8 10 221 6 207 7.20e-11 63.2
MS.gene031603.t1 MTR_1g053025 29.954 217 133 9 19 222 2 212 7.55e-11 63.2
MS.gene031603.t1 MTR_2g007400 31.527 203 118 8 19 204 12 210 7.70e-11 63.2
MS.gene031603.t1 MTR_6g088700 23.734 316 214 8 16 323 11 307 7.98e-11 63.2
MS.gene031603.t1 MTR_3g107100 27.979 193 124 6 16 201 8 192 8.40e-11 63.2
MS.gene031603.t1 MTR_1g038760 28.054 221 131 8 10 221 6 207 8.81e-11 62.8
MS.gene031603.t1 MTR_5g092960 24.924 329 224 8 1 316 1 319 8.84e-11 63.2
MS.gene031603.t1 MTR_3g040700 28.351 194 117 6 19 201 43 225 9.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031603.t1 AT5G53840 31.061 264 170 4 15 278 14 265 5.44e-24 102
MS.gene031603.t1 AT4G00315 32.599 227 139 6 19 234 2 225 8.63e-24 101
MS.gene031603.t1 AT4G14103 29.073 313 201 10 18 319 7 309 1.33e-23 100
MS.gene031603.t1 AT4G14103 29.073 313 201 10 18 319 7 309 1.33e-23 100
MS.gene031603.t1 AT4G14103 29.073 313 201 10 18 319 7 309 2.67e-23 100
MS.gene031603.t1 AT1G66290 29.524 315 199 9 12 319 22 320 3.18e-23 100
MS.gene031603.t1 AT1G55660 32.589 224 143 5 14 232 48 268 1.36e-22 97.4
MS.gene031603.t1 AT4G14096 29.967 307 199 10 18 319 7 302 3.59e-22 97.4
MS.gene031603.t1 AT4G14096 29.967 307 199 10 18 319 7 302 3.59e-22 97.4
MS.gene031603.t1 AT1G55660 32.589 224 143 5 14 232 48 268 4.88e-22 97.1
MS.gene031603.t1 AT3G26922 29.864 221 147 3 11 229 6 220 5.14e-22 94.7
MS.gene031603.t1 AT3G26922 29.864 221 147 3 11 229 6 220 5.14e-22 94.7
MS.gene031603.t1 AT3G59200 28.354 328 194 11 18 319 6 318 2.41e-21 94.0
MS.gene031603.t1 AT3G59200 28.354 328 194 11 18 319 6 318 8.23e-21 93.6
MS.gene031603.t1 AT3G58880 26.970 330 190 13 17 319 1 306 1.20e-20 92.8
MS.gene031603.t1 AT1G66300 27.937 315 194 9 19 319 29 324 1.25e-20 92.8
MS.gene031603.t1 AT1G32375 30.516 213 140 3 19 227 2 210 1.58e-20 92.0
MS.gene031603.t1 AT1G32375 30.516 213 140 3 19 227 2 210 1.58e-20 92.0
MS.gene031603.t1 AT3G58860 27.508 309 199 11 19 319 7 298 1.79e-20 92.4
MS.gene031603.t1 AT3G59210 30.530 321 191 13 18 319 6 313 2.07e-20 92.4
MS.gene031603.t1 AT3G59210 30.530 321 191 13 18 319 6 313 2.07e-20 92.4
MS.gene031603.t1 AT3G59210 30.530 321 191 13 18 319 6 313 2.07e-20 92.4
MS.gene031603.t1 AT3G59210 30.530 321 191 13 18 319 6 313 2.07e-20 92.4
MS.gene031603.t1 AT3G59210 30.530 321 191 13 18 319 6 313 2.07e-20 92.4
MS.gene031603.t1 AT1G58310 28.994 338 201 11 13 319 2 331 1.27e-19 90.1
MS.gene031603.t1 AT3G58900 27.356 329 194 11 19 319 2 313 1.88e-19 87.8
MS.gene031603.t1 AT3G58900 27.356 329 194 11 19 319 2 313 2.16e-19 87.8
MS.gene031603.t1 AT3G58900 27.356 329 194 11 19 319 2 313 2.16e-19 87.8
MS.gene031603.t1 AT4G13985 27.044 318 208 11 15 319 15 321 4.15e-19 88.2
MS.gene031603.t1 AT3G58900 27.356 329 194 11 19 319 2 313 7.82e-19 87.4
MS.gene031603.t1 AT4G10400 30.435 207 140 3 19 224 2 205 8.51e-19 87.0
MS.gene031603.t1 AT4G10400 30.435 207 140 3 19 224 2 205 8.51e-19 87.0
MS.gene031603.t1 AT4G10400 30.435 207 140 3 19 224 2 205 8.51e-19 87.0
MS.gene031603.t1 AT2G04230 34.101 217 132 5 18 227 12 224 1.29e-18 86.7
MS.gene031603.t1 AT1G55030 29.224 219 142 4 12 227 12 220 1.54e-18 86.7
MS.gene031603.t1 AT1G55030 29.224 219 142 4 12 227 2 210 1.54e-18 86.3
MS.gene031603.t1 AT4G15060 27.823 248 166 6 13 254 18 258 1.75e-18 86.3
MS.gene031603.t1 AT5G22660 27.597 308 211 5 18 321 12 311 2.11e-18 84.7
MS.gene031603.t1 AT3G59240 28.344 314 200 10 18 319 7 307 3.50e-18 85.9
MS.gene031603.t1 AT5G56420 28.852 305 177 10 18 312 5 279 3.64e-18 85.5
MS.gene031603.t1 AT5G56420 28.852 305 177 10 18 312 5 279 3.64e-18 85.5
MS.gene031603.t1 AT5G56420 28.852 305 177 10 18 312 5 279 3.64e-18 85.5
MS.gene031603.t1 AT3G59230 25.641 351 229 10 10 336 4 346 4.60e-18 85.5
MS.gene031603.t1 AT4G00160 30.876 217 140 4 18 229 15 226 5.00e-18 85.1
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 7.63e-18 83.2
MS.gene031603.t1 AT3G49150 26.498 317 220 8 18 328 15 324 1.08e-17 84.3
MS.gene031603.t1 AT3G59160 27.059 340 205 11 18 319 12 346 1.25e-17 84.0
MS.gene031603.t1 AT5G44950 27.974 311 203 9 18 319 3 301 1.52e-17 83.6
MS.gene031603.t1 AT4G22280 29.545 264 161 7 19 274 2 248 1.77e-17 82.4
MS.gene031603.t1 AT1G66310 28.963 328 206 11 1 319 1 310 2.06e-17 83.2
MS.gene031603.t1 AT3G59170 27.035 344 203 12 18 319 6 343 2.07e-17 83.2
MS.gene031603.t1 AT4G22280 29.545 264 161 7 19 274 2 248 2.14e-17 83.2
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 2.33e-17 82.4
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 2.33e-17 82.4
MS.gene031603.t1 AT1G51370 28.378 222 133 5 14 227 14 217 2.77e-17 82.0
MS.gene031603.t1 AT5G22720 30.556 252 148 8 18 258 22 257 2.95e-17 82.8
MS.gene031603.t1 AT5G38590 28.485 330 208 9 19 339 2 312 3.07e-17 82.4
MS.gene031603.t1 AT5G38590 32.075 212 134 4 19 227 2 206 3.09e-17 81.3
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 20 312 3.19e-17 82.4
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 3.57e-17 82.4
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 3.57e-17 82.4
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 3.57e-17 82.4
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 3.57e-17 82.4
MS.gene031603.t1 AT5G22660 27.124 306 211 5 18 319 12 309 4.73e-17 82.0
MS.gene031603.t1 AT1G51370 28.378 222 133 5 14 227 14 217 5.12e-17 82.0
MS.gene031603.t1 AT1G06630 28.165 316 190 13 18 319 11 303 5.14e-17 82.0
MS.gene031603.t1 AT1G51370 28.378 222 133 5 14 227 14 217 6.31e-17 81.6
MS.gene031603.t1 AT4G09920 27.826 230 158 4 19 247 2 224 6.67e-17 80.1
MS.gene031603.t1 AT4G09920 27.826 230 158 4 19 247 2 224 6.67e-17 80.1
MS.gene031603.t1 AT4G09920 27.826 230 158 4 19 247 2 224 6.67e-17 80.1
MS.gene031603.t1 AT4G15060 27.984 243 163 6 16 254 170 404 6.71e-17 82.0
MS.gene031603.t1 AT5G22670 26.159 302 217 2 18 319 10 305 7.56e-17 81.6
MS.gene031603.t1 AT4G09920 27.826 230 158 4 19 247 2 224 1.35e-16 79.7
MS.gene031603.t1 AT4G09920 27.826 230 158 4 19 247 2 224 1.35e-16 79.7
MS.gene031603.t1 AT2G42730 27.726 321 200 11 16 319 2 307 1.49e-16 80.9
MS.gene031603.t1 AT4G13965 29.108 213 137 3 19 227 10 212 3.84e-16 79.3
MS.gene031603.t1 AT3G52680 31.646 237 142 8 1 227 1 227 6.00e-16 78.6
MS.gene031603.t1 AT2G29930 29.080 337 174 14 10 319 4 302 6.90e-16 78.6
MS.gene031603.t1 AT2G29930 29.080 337 174 14 10 319 4 302 6.90e-16 78.6
MS.gene031603.t1 AT4G26340 27.273 297 188 9 19 312 2 273 9.49e-16 78.2
MS.gene031603.t1 AT1G13570 28.525 305 164 13 14 310 1 259 1.24e-15 76.6
MS.gene031603.t1 AT3G52680 32.203 236 142 8 1 227 1 227 1.48e-15 77.8
MS.gene031603.t1 AT4G13960 27.273 319 199 13 19 319 2 305 1.93e-15 77.4
MS.gene031603.t1 AT4G13960 27.273 319 199 13 19 319 2 305 1.93e-15 77.4
MS.gene031603.t1 AT1G16930 26.994 326 215 9 19 334 15 327 3.16e-15 76.6
MS.gene031603.t1 AT1G16930 26.994 326 215 9 19 334 15 327 3.16e-15 76.6
MS.gene031603.t1 AT1G16930 26.994 326 215 9 19 334 15 327 3.16e-15 76.6
MS.gene031603.t1 AT3G44810 28.839 267 169 9 24 278 12 269 3.42e-15 76.6
MS.gene031603.t1 AT1G13570 28.525 305 164 13 14 310 1 259 4.33e-15 76.3
MS.gene031603.t1 AT1G13570 28.525 305 164 13 14 310 1 259 4.33e-15 76.3
MS.gene031603.t1 AT5G56410 26.557 305 185 7 26 312 10 293 5.70e-15 76.3
MS.gene031603.t1 AT5G02930 29.703 202 127 6 19 219 28 215 6.39e-15 75.9
MS.gene031603.t1 AT5G56440 31.579 209 136 5 19 225 2 205 8.45e-15 75.5
MS.gene031603.t1 AT1G05080 27.523 327 209 10 18 340 12 314 9.53e-15 75.1
MS.gene031603.t1 AT5G22700 26.724 348 216 11 10 339 34 360 9.59e-15 75.5
MS.gene031603.t1 AT5G27750 23.235 340 229 12 19 338 5 332 9.83e-15 74.7
MS.gene031603.t1 AT5G52460 31.111 225 118 3 18 242 16 203 1.01e-14 74.7
MS.gene031603.t1 AT5G56690 28.571 210 141 4 21 224 4 210 1.03e-14 75.1
MS.gene031603.t1 AT5G38570 29.665 209 101 5 19 224 2 167 1.04e-14 74.7
MS.gene031603.t1 AT1G78750 28.438 320 195 12 19 319 18 322 1.04e-14 75.1
MS.gene031603.t1 AT1G78750 28.438 320 195 12 19 319 18 322 1.04e-14 75.1
MS.gene031603.t1 AT3G26922 26.904 197 136 3 35 229 1 191 1.12e-14 73.6
MS.gene031603.t1 AT3G26922 26.904 197 136 3 35 229 1 191 1.12e-14 73.6
MS.gene031603.t1 AT3G03040 23.547 344 220 13 19 336 2 328 1.18e-14 75.1
MS.gene031603.t1 AT5G27750 23.599 339 229 12 19 338 5 332 1.22e-14 75.1
MS.gene031603.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.46e-14 74.7
MS.gene031603.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.59e-14 74.7
MS.gene031603.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.59e-14 74.7
MS.gene031603.t1 AT5G44980 27.044 318 205 12 18 323 3 305 3.37e-14 72.8
MS.gene031603.t1 AT5G44980 27.044 318 205 12 18 323 3 305 3.37e-14 72.8
MS.gene031603.t1 AT3G28410 23.939 330 192 11 8 319 19 307 4.22e-14 73.6
MS.gene031603.t1 AT3G50710 29.767 215 139 5 19 226 2 211 4.35e-14 73.2
MS.gene031603.t1 AT5G44490 28.507 221 142 5 18 230 16 228 4.84e-14 73.2
MS.gene031603.t1 AT5G44490 28.507 221 142 5 18 230 16 228 5.64e-14 73.2
MS.gene031603.t1 AT1G78730 26.349 315 180 9 19 319 22 298 6.09e-14 72.8
MS.gene031603.t1 AT5G41630 24.859 354 225 12 13 336 6 348 6.35e-14 72.8
MS.gene031603.t1 AT5G22700 26.744 344 213 11 14 339 1 323 6.53e-14 72.8
MS.gene031603.t1 AT5G22700 26.744 344 213 11 14 339 1 323 6.53e-14 72.8
MS.gene031603.t1 AT5G22700 26.744 344 213 11 14 339 1 323 6.53e-14 72.8
MS.gene031603.t1 AT5G22700 26.744 344 213 11 14 339 1 323 6.53e-14 72.8
MS.gene031603.t1 AT1G69630 26.727 333 205 13 5 319 4 315 9.32e-14 72.4
MS.gene031603.t1 AT3G59190 25.148 338 207 13 10 319 4 323 1.16e-13 71.6
MS.gene031603.t1 AT3G59190 24.294 354 222 13 10 335 4 339 1.29e-13 72.0
MS.gene031603.t1 AT3G49030 31.050 219 136 8 18 230 20 229 1.29e-13 71.6
MS.gene031603.t1 AT5G25860 25.731 342 215 16 18 336 11 336 1.60e-13 71.6
MS.gene031603.t1 AT3G49030 31.050 219 136 8 18 230 20 229 1.88e-13 71.2
MS.gene031603.t1 AT4G27050 29.952 207 118 5 19 204 4 204 2.68e-13 70.9
MS.gene031603.t1 AT4G27050 29.952 207 118 5 19 204 4 204 2.68e-13 70.9
MS.gene031603.t1 AT4G27050 29.952 207 118 5 19 204 4 204 2.68e-13 70.9
MS.gene031603.t1 AT4G27050 29.952 207 118 5 19 204 4 204 2.68e-13 70.9
MS.gene031603.t1 AT4G27050 29.952 207 118 5 19 204 4 204 2.68e-13 70.9
MS.gene031603.t1 AT5G53635 29.032 217 133 6 20 227 1 205 5.30e-13 70.1
MS.gene031603.t1 AT3G58960 27.864 323 207 14 19 330 2 309 5.40e-13 70.1
MS.gene031603.t1 AT5G60610 29.224 219 139 5 19 232 2 209 7.68e-13 69.3
MS.gene031603.t1 AT5G60610 29.224 219 139 5 19 232 2 209 7.68e-13 69.3
MS.gene031603.t1 AT5G22730 27.974 311 205 9 18 318 27 328 8.36e-13 69.3
MS.gene031603.t1 AT5G22730 29.707 239 157 6 18 250 27 260 8.68e-13 69.3
MS.gene031603.t1 AT5G22730 29.707 239 157 6 18 250 27 260 8.68e-13 69.3
MS.gene031603.t1 AT3G51530 27.604 192 129 4 18 208 29 211 9.64e-13 69.3
MS.gene031603.t1 AT2G26860 27.876 226 149 5 19 235 2 222 1.27e-12 68.6
MS.gene031603.t1 AT2G26860 27.876 226 149 5 19 235 2 222 1.27e-12 68.6
MS.gene031603.t1 AT5G53640 27.979 193 117 5 18 203 21 198 1.33e-12 67.0
MS.gene031603.t1 AT3G49040 27.193 228 141 8 18 232 16 231 1.62e-12 67.8
MS.gene031603.t1 AT5G02700 29.612 206 124 7 7 208 17 205 1.78e-12 68.6
MS.gene031603.t1 AT5G41830 24.412 340 209 12 18 326 12 334 1.86e-12 68.6
MS.gene031603.t1 AT5G22610 24.149 323 209 10 17 319 16 322 2.09e-12 68.2
MS.gene031603.t1 AT4G00320 26.023 342 201 12 18 326 12 334 2.53e-12 68.2
MS.gene031603.t1 AT3G44060 27.670 206 139 3 24 220 4 208 3.67e-12 67.4
MS.gene031603.t1 AT5G50270 26.198 313 205 8 19 327 2 292 4.63e-12 66.2
MS.gene031603.t1 AT5G44980 26.710 307 198 12 18 312 3 294 7.08e-12 66.6
MS.gene031603.t1 AT5G44980 26.710 307 198 12 18 312 3 294 7.08e-12 66.6
MS.gene031603.t1 AT3G03030 24.465 327 210 13 19 319 2 317 7.71e-12 65.9
MS.gene031603.t1 AT5G38396 25.152 330 199 13 19 319 2 312 8.97e-12 66.2
MS.gene031603.t1 AT2G42720 27.900 319 193 12 19 319 2 301 9.99e-12 66.2
MS.gene031603.t1 AT5G22700 26.552 290 181 8 10 285 34 305 1.04e-11 65.9
MS.gene031603.t1 AT4G26350 29.101 189 123 4 19 203 2 183 1.32e-11 65.9
MS.gene031603.t1 AT3G26930 27.000 300 190 7 18 313 20 294 1.43e-11 65.5
MS.gene031603.t1 AT5G44960 25.969 258 161 11 19 263 5 245 1.44e-11 65.5
MS.gene031603.t1 AT3G03030 24.224 322 217 12 19 319 2 317 1.58e-11 65.5
MS.gene031603.t1 AT3G42770 23.529 323 220 9 24 335 4 310 1.76e-11 65.5
MS.gene031603.t1 AT5G41840 25.287 348 213 11 14 325 9 345 2.31e-11 65.1
MS.gene031603.t1 AT5G56810 29.353 201 126 8 11 203 5 197 2.44e-11 64.3
MS.gene031603.t1 AT5G50270 26.689 296 191 8 19 310 2 275 2.56e-11 64.7
MS.gene031603.t1 AT5G56810 29.353 201 126 8 11 203 5 197 2.84e-11 64.7
MS.gene031603.t1 AT5G02910 46.667 60 32 0 16 75 8 67 3.02e-11 64.3
MS.gene031603.t1 AT5G02910 46.667 60 32 0 16 75 8 67 3.12e-11 64.3
MS.gene031603.t1 AT1G22000 30.317 221 129 5 21 237 31 230 3.23e-11 64.7
MS.gene031603.t1 AT5G22610 24.051 316 188 11 17 319 16 292 3.30e-11 64.7
MS.gene031603.t1 AT5G02910 46.667 60 32 0 16 75 8 67 5.16e-11 63.9
MS.gene031603.t1 AT3G58980 26.032 315 192 11 19 312 2 296 5.85e-11 63.9
MS.gene031603.t1 AT3G58920 25.000 352 204 13 19 332 2 331 7.56e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTATCCTTGACGATAT+TGG 0.202752 4.3:+29141989 None:intergenic
ATGTTGCGATTTCCACATTA+AGG 0.206909 4.3:-29142340 MS.gene031603:CDS
AGAGGGATAAATTCTATTAT+TGG 0.223816 4.3:+29142209 None:intergenic
ACTTGAAATCTGAGAAACTA+TGG 0.286675 4.3:+29142561 None:intergenic
AGAAGTTCTAACGGCGTCTT+TGG 0.315218 4.3:+29142871 None:intergenic
TTAGCAGCAGAAGCTATTAT+AGG 0.373178 4.3:+29142644 None:intergenic
CTTTGGATCTTATGCACATC+TGG 0.376653 4.3:+29142974 None:intergenic
TGTCACCCACATTATGCCTT+TGG 0.377548 4.3:+29142957 None:intergenic
TGTTGCGATTTCCACATTAA+GGG 0.422533 4.3:-29142339 MS.gene031603:CDS
ACAATGGAGGTCAGGTTAAG+AGG 0.430331 4.3:+29142191 None:intergenic
CTAGAGGTAGCACTCTCAAT+AGG 0.433502 4.3:+29141968 None:intergenic
TACACAATGCCAACTCTTGT+AGG 0.436890 4.3:+29142393 None:intergenic
CTCCATTGTTGTTGCATGTG+TGG 0.461254 4.3:-29142177 MS.gene031603:CDS
AATTGCCTCTTTGATATTGT+GGG 0.464505 4.3:-29142749 MS.gene031603:CDS
AAAGATCTTCAGCTTTCTCT+AGG 0.469504 4.3:-29142611 MS.gene031603:CDS
GGAAACTCTTGAGGTATGTA+TGG 0.483097 4.3:-29142042 MS.gene031603:CDS
GAATTGCCTCTTTGATATTG+TGG 0.495488 4.3:-29142750 MS.gene031603:CDS
AGAAAGAATATAATGAAGAA+TGG 0.504163 4.3:+29142904 None:intergenic
ACTAGCAATGTCTTCACACT+AGG 0.511429 4.3:+29142476 None:intergenic
AATGCCAACTCTTGTAGGAC+AGG 0.519062 4.3:+29142398 None:intergenic
ATATAATGAAGAATGGCATC+GGG 0.519888 4.3:+29142911 None:intergenic
AACTGACTTCTCATTTGCAA+AGG 0.521307 4.3:+29142442 None:intergenic
CAATGGAGGTCAGGTTAAGA+GGG 0.521610 4.3:+29142192 None:intergenic
CTTGAAATCTGAGAAACTAT+GGG 0.524464 4.3:+29142562 None:intergenic
AATATAATGAAGAATGGCAT+CGG 0.525790 4.3:+29142910 None:intergenic
ATGCAACAACAATGGAGGTC+AGG 0.531268 4.3:+29142183 None:intergenic
CGTGCAATTAAGTTATTGAG+TGG 0.564973 4.3:-29142098 MS.gene031603:CDS
TAAGATCCAAAGGCATAATG+TGG 0.572424 4.3:-29142963 MS.gene031603:CDS
CTAGGGAAACGAATACGACT+AGG 0.579790 4.3:+29142494 None:intergenic
GTGCCCTGTCCTACAAGAGT+TGG 0.580632 4.3:-29142402 MS.gene031603:CDS
CTTCTATATTATCATCAAAG+TGG 0.581389 4.3:-29142853 MS.gene031603:CDS
CAAATCTCTCAAAATATCGA+AGG 0.592683 4.3:-29142063 MS.gene031603:CDS
ATGAACTTCAAAATCAAAGA+CGG 0.596207 4.3:+29142808 None:intergenic
ATCCACACATGCAACAACAA+TGG 0.604459 4.3:+29142175 None:intergenic
CTAGCAATGTCTTCACACTA+GGG 0.604984 4.3:+29142477 None:intergenic
AATGATCAAGACCCTTAATG+TGG 0.609271 4.3:+29142328 None:intergenic
ATCGTCCCACAATATCAAAG+AGG 0.616712 4.3:+29142744 None:intergenic
CATCAAAGTGGAGGTACCTG+TGG 0.618068 4.3:-29142841 MS.gene031603:CDS
AATATCGAAGGAAACTCTTG+AGG 0.622107 4.3:-29142051 MS.gene031603:CDS
CAGATGTGCATAAGATCCAA+AGG 0.627449 4.3:-29142973 MS.gene031603:CDS
TGATAATATAGAAGTTCTAA+CGG 0.635169 4.3:+29142862 None:intergenic
AGACGGATAATTGAGTCCAC+AGG 0.649084 4.3:+29142825 None:intergenic
AGACTCTGCGTTAAAATACG+TGG 0.651671 4.3:-29142695 MS.gene031603:CDS
AAGATCCAAAGGCATAATGT+GGG 0.661125 4.3:-29142962 MS.gene031603:CDS
CACACATGCAACAACAATGG+AGG 0.664413 4.3:+29142178 None:intergenic
CTATATTATCATCAAAGTGG+AGG 0.668393 4.3:-29142850 MS.gene031603:CDS
TTGAAATCTGAGAAACTATG+GGG 0.690741 4.3:+29142563 None:intergenic
ATGCCAACTCTTGTAGGACA+GGG 0.696929 4.3:+29142399 None:intergenic
TAATTGCACGATGAGCAGCA+CGG 0.762315 4.3:+29142111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGAATATAATGAAGAA+TGG + chr4.3:29142065-29142084 None:intergenic 20.0%
!!! TGATAATATAGAAGTTCTAA+CGG + chr4.3:29142107-29142126 None:intergenic 20.0%
! AATATAATGAAGAATGGCAT+CGG + chr4.3:29142059-29142078 None:intergenic 25.0%
! AGAGGGATAAATTCTATTAT+TGG + chr4.3:29142760-29142779 None:intergenic 25.0%
! ATGAACTTCAAAATCAAAGA+CGG + chr4.3:29142161-29142180 None:intergenic 25.0%
! CTTCTATATTATCATCAAAG+TGG - chr4.3:29142113-29142132 MS.gene031603:CDS 25.0%
!!! CTGTCATTTTAAGAACATAA+AGG - chr4.3:29142597-29142616 MS.gene031603:CDS 25.0%
!!! CTTTGATTTTGAAGTTCATA+AGG - chr4.3:29142162-29142181 MS.gene031603:CDS 25.0%
AATTGCCTCTTTGATATTGT+GGG - chr4.3:29142217-29142236 MS.gene031603:CDS 30.0%
ACTTGAAATCTGAGAAACTA+TGG + chr4.3:29142408-29142427 None:intergenic 30.0%
ATATAATGAAGAATGGCATC+GGG + chr4.3:29142058-29142077 None:intergenic 30.0%
CAAATCTCTCAAAATATCGA+AGG - chr4.3:29142903-29142922 MS.gene031603:CDS 30.0%
CTATATTATCATCAAAGTGG+AGG - chr4.3:29142116-29142135 MS.gene031603:CDS 30.0%
CTTGAAATCTGAGAAACTAT+GGG + chr4.3:29142407-29142426 None:intergenic 30.0%
TTGAAATCTGAGAAACTATG+GGG + chr4.3:29142406-29142425 None:intergenic 30.0%
! TTTTCTTTCCAATATCGTCA+AGG - chr4.3:29142969-29142988 MS.gene031603:CDS 30.0%
AAAGATCTTCAGCTTTCTCT+AGG - chr4.3:29142355-29142374 MS.gene031603:CDS 35.0%
AATATCGAAGGAAACTCTTG+AGG - chr4.3:29142915-29142934 MS.gene031603:CDS 35.0%
AATGATCAAGACCCTTAATG+TGG + chr4.3:29142641-29142660 None:intergenic 35.0%
ATGTTGCGATTTCCACATTA+AGG - chr4.3:29142626-29142645 MS.gene031603:CDS 35.0%
CGTGCAATTAAGTTATTGAG+TGG - chr4.3:29142868-29142887 MS.gene031603:CDS 35.0%
GAATTGCCTCTTTGATATTG+TGG - chr4.3:29142216-29142235 MS.gene031603:CDS 35.0%
TGTTGCGATTTCCACATTAA+GGG - chr4.3:29142627-29142646 MS.gene031603:CDS 35.0%
TTAGCAGCAGAAGCTATTAT+AGG + chr4.3:29142325-29142344 None:intergenic 35.0%
! AACTGACTTCTCATTTGCAA+AGG + chr4.3:29142527-29142546 None:intergenic 35.0%
! AAGATCCAAAGGCATAATGT+GGG - chr4.3:29142004-29142023 MS.gene031603:CDS 35.0%
! TAAGATCCAAAGGCATAATG+TGG - chr4.3:29142003-29142022 MS.gene031603:CDS 35.0%
ACTAGCAATGTCTTCACACT+AGG + chr4.3:29142493-29142512 None:intergenic 40.0%
AGACTCTGCGTTAAAATACG+TGG - chr4.3:29142271-29142290 MS.gene031603:CDS 40.0%
ATCCACACATGCAACAACAA+TGG + chr4.3:29142794-29142813 None:intergenic 40.0%
ATCGTCCCACAATATCAAAG+AGG + chr4.3:29142225-29142244 None:intergenic 40.0%
CAGATGTGCATAAGATCCAA+AGG - chr4.3:29141993-29142012 MS.gene031603:CDS 40.0%
CTAGCAATGTCTTCACACTA+GGG + chr4.3:29142492-29142511 None:intergenic 40.0%
CTTTGGATCTTATGCACATC+TGG + chr4.3:29141995-29142014 None:intergenic 40.0%
GGAAACTCTTGAGGTATGTA+TGG - chr4.3:29142924-29142943 MS.gene031603:CDS 40.0%
GGCATTATCCTTGACGATAT+TGG + chr4.3:29142980-29142999 None:intergenic 40.0%
TACACAATGCCAACTCTTGT+AGG + chr4.3:29142576-29142595 None:intergenic 40.0%
! CAGTTCAACGTCTTTTCTCT+GGG - chr4.3:29142542-29142561 MS.gene031603:CDS 40.0%
! TCAGTTCAACGTCTTTTCTC+TGG - chr4.3:29142541-29142560 MS.gene031603:CDS 40.0%
!! TGGATTGCTTTTGCAGCTTA+AGG + chr4.3:29142740-29142759 None:intergenic 40.0%
!!! TCGCTGACTTCTGATCTTTT+TGG + chr4.3:29142198-29142217 None:intergenic 40.0%
AATGCCAACTCTTGTAGGAC+AGG + chr4.3:29142571-29142590 None:intergenic 45.0%
ACAATGGAGGTCAGGTTAAG+AGG + chr4.3:29142778-29142797 None:intergenic 45.0%
AGACGGATAATTGAGTCCAC+AGG + chr4.3:29142144-29142163 None:intergenic 45.0%
ATGCAACAACAATGGAGGTC+AGG + chr4.3:29142786-29142805 None:intergenic 45.0%
ATGCCAACTCTTGTAGGACA+GGG + chr4.3:29142570-29142589 None:intergenic 45.0%
CAATGGAGGTCAGGTTAAGA+GGG + chr4.3:29142777-29142796 None:intergenic 45.0%
CACACATGCAACAACAATGG+AGG + chr4.3:29142791-29142810 None:intergenic 45.0%
CTAGGGAAACGAATACGACT+AGG + chr4.3:29142475-29142494 None:intergenic 45.0%
TAATTGCACGATGAGCAGCA+CGG + chr4.3:29142858-29142877 None:intergenic 45.0%
TGTCACCCACATTATGCCTT+TGG + chr4.3:29142012-29142031 None:intergenic 45.0%
! AGAAGTTCTAACGGCGTCTT+TGG + chr4.3:29142098-29142117 None:intergenic 45.0%
! CTCCATTGTTGTTGCATGTG+TGG - chr4.3:29142789-29142808 MS.gene031603:CDS 45.0%
!! CATCAAAGTGGAGGTACCTG+TGG - chr4.3:29142125-29142144 MS.gene031603:CDS 50.0%
GTGCCCTGTCCTACAAGAGT+TGG - chr4.3:29142564-29142583 MS.gene031603:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 29141983 29143005 29141983 ID=MS.gene031603
chr4.3 mRNA 29141983 29143005 29141983 ID=MS.gene031603.t1;Parent=MS.gene031603
chr4.3 exon 29141983 29143005 29141983 ID=MS.gene031603.t1.exon1;Parent=MS.gene031603.t1
chr4.3 CDS 29141983 29143005 29141983 ID=cds.MS.gene031603.t1;Parent=MS.gene031603.t1
Gene Sequence

>MS.gene031603

ATGTCATCACCAGATGTGCATAAGATCCAAAGGCATAATGTGGGTGACATGAAAGATATAATAAGTGACTTGCCCGATGCCATTCTTCATTATATTCTTTCTTTACTCTCTACCAAAGACGCCGTTAGAACTTCTATATTATCATCAAAGTGGAGGTACCTGTGGACTCAATTATCCGTCTTTGATTTTGAAGTTCATAAGGATGACTCGAACCAAAAAGATCAGAAGTCAGCGAATTGCCTCTTTGATATTGTGGGACGATTAATGCACAACTCTAATTGTGTAGAAAGACTCTGCGTTAAAATACGTGGAATTACTGTTGATGCATACAAAATTAGTCCTATAATAGCTTCTGCTGCTAAGCACAAAGTTAAAGATCTTCAGCTTTCTCTAGGTGATGTAAGTAGTAAGTGTGTGTTACCCCATAGTTTCTCAGATTTCAAGTCATTGACGAAACTGTGTTTAGAACTCAAGTTCACTCTATATATTCCTAGTCGTATTCGTTTCCCTAGTGTGAAGACATTGCTAGTTGTAGATGTTACCTTTGCAAATGAGAAGTCAGTTCAACGTCTTTTCTCTGGGTGCCCTGTCCTACAAGAGTTGGCATTGTGTAACTGTCATTTTAAGAACATAAAGGAGATCAATGTTGCGATTTCCACATTAAGGGTCTTGATCATTCATTTTGACTTCGTTTGTCTAAATTATGATCAGTTTGATAAATTCATAGTCAAGATTGATGCTGTGAATCTTTTATCCTTAAGCTGCAAAAGCAATCCAATAATAGAATTTATCCCTCTTAACCTGACCTCCATTGTTGTTGCATGTGTGGATCTCACTAATAAATATGCAGAACATGTAGCACATTTTGCTCACCGTGCTGCTCATCGTGCAATTAAGTTATTGAGTGGACTTAATAGTGTCAAATCTCTCAAAATATCGAAGGAAACTCTTGAGGTATGTATGGTTGTTCGCTCATCTTCTTTTTCTTTTCTTTCCAATATCGTCAAGGATAATGCCTATTGA

Protein sequence

>MS.gene031603.t1

MSSPDVHKIQRHNVGDMKDIISDLPDAILHYILSLLSTKDAVRTSILSSKWRYLWTQLSVFDFEVHKDDSNQKDQKSANCLFDIVGRLMHNSNCVERLCVKIRGITVDAYKISPIIASAAKHKVKDLQLSLGDVSSKCVLPHSFSDFKSLTKLCLELKFTLYIPSRIRFPSVKTLLVVDVTFANEKSVQRLFSGCPVLQELALCNCHFKNIKEINVAISTLRVLIIHFDFVCLNYDQFDKFIVKIDAVNLLSLSCKSNPIIEFIPLNLTSIVVACVDLTNKYAEHVAHFAHRAAHRAIKLLSGLNSVKSLKISKETLEVCMVVRSSSFSFLSNIVKDNAY