AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006692


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006692.t1 MTR_3g048290 57.595 316 125 4 1 313 5 314 4.59e-109 327
MS.gene006692.t1 MTR_4g080787 55.623 329 121 7 3 318 6 322 2.81e-103 312
MS.gene006692.t1 MTR_4g080773 54.407 329 128 6 3 318 6 325 2.05e-99 303
MS.gene006692.t1 MTR_5g039970 51.786 336 151 5 1 332 1 329 2.46e-99 296
MS.gene006692.t1 MTR_4g080773 54.407 329 128 6 3 318 6 325 3.03e-99 302
MS.gene006692.t1 MTR_4g080590 49.394 330 149 5 1 326 5 320 5.27e-88 269
MS.gene006692.t1 MTR_4g080590 49.394 330 149 5 1 326 5 320 7.86e-87 269
MS.gene006692.t1 MTR_7g023310 51.049 286 125 6 1 278 5 283 5.35e-80 251
MS.gene006692.t1 MTR_5g039950 46.729 321 120 5 1 318 5 277 1.39e-79 249
MS.gene006692.t1 MTR_2g094750 46.364 330 152 9 17 323 88 415 1.29e-77 246
MS.gene006692.t1 MTR_7g039630 45.483 321 134 3 1 318 5 287 3.20e-76 238
MS.gene006692.t1 MTR_4g081030 44.620 316 147 8 9 318 7 300 1.60e-65 212
MS.gene006692.t1 MTR_7g023330 41.615 322 117 6 2 318 3 258 6.71e-64 208
MS.gene006692.t1 MTR_4g130200 41.379 319 113 6 1 318 5 250 9.16e-60 197
MS.gene006692.t1 MTR_4g080807 45.902 244 91 4 89 332 1 203 8.66e-53 179
MS.gene006692.t1 MTR_4g080813 62.651 83 28 2 1 80 1 83 1.53e-26 101
MS.gene006692.t1 MTR_1g082260 36.774 155 95 1 72 223 23 177 1.29e-24 99.0
MS.gene006692.t1 MTR_5g080710 31.925 213 133 4 19 226 33 238 7.41e-20 90.5
MS.gene006692.t1 MTR_2g094450 55.814 86 37 1 194 278 31 116 2.32e-19 85.1
MS.gene006692.t1 MTR_5g005690 27.876 226 152 4 7 226 5 225 1.15e-17 84.0
MS.gene006692.t1 MTR_8g066650 29.231 325 192 10 12 323 73 372 2.25e-17 83.2
MS.gene006692.t1 MTR_5g038430 30.804 224 141 7 10 226 87 303 4.56e-16 79.3
MS.gene006692.t1 MTR_2g082850 31.474 251 137 11 1 229 1 238 4.78e-16 78.6
MS.gene006692.t1 MTR_4g032730 26.332 319 192 10 10 311 4 296 6.08e-16 79.0
MS.gene006692.t1 MTR_2g005990 30.542 203 121 5 19 205 6 204 1.14e-15 77.8
MS.gene006692.t1 MTR_5g073340 33.514 185 91 7 19 201 8 162 5.30e-15 75.1
MS.gene006692.t1 MTR_8g467800 26.087 322 210 8 10 322 11 313 5.86e-15 75.1
MS.gene006692.t1 MTR_0049s0110 30.631 222 137 9 19 233 8 219 7.18e-15 74.3
MS.gene006692.t1 MTR_3g108560 29.843 191 120 6 13 201 14 192 7.74e-15 74.7
MS.gene006692.t1 MTR_0049s0110 32.632 190 116 7 19 203 8 190 1.21e-14 74.3
MS.gene006692.t1 MTR_3g108560 29.843 191 120 6 13 201 14 192 1.30e-14 74.7
MS.gene006692.t1 MTR_0049s0110 32.632 190 116 7 19 203 8 190 1.83e-14 73.6
MS.gene006692.t1 MTR_0049s0110 30.631 222 137 9 19 233 8 219 2.28e-14 73.9
MS.gene006692.t1 MTR_8g467800 25.786 318 208 8 10 318 11 309 2.51e-14 73.9
MS.gene006692.t1 MTR_5g084070 31.250 208 131 3 19 224 13 210 3.45e-14 73.6
MS.gene006692.t1 MTR_3g110010 27.356 329 201 10 18 338 12 310 3.53e-14 73.9
MS.gene006692.t1 MTR_1g038710 26.129 310 201 10 19 317 19 311 5.20e-14 73.2
MS.gene006692.t1 MTR_3g109982 27.356 329 201 10 18 338 12 310 5.81e-14 73.2
MS.gene006692.t1 MTR_3g023470 28.440 327 203 13 8 323 2 308 1.27e-13 71.6
MS.gene006692.t1 MTR_1g115245 27.064 218 146 4 10 224 17 224 1.44e-13 70.9
MS.gene006692.t1 MTR_6g025160 25.283 265 183 5 1 262 83 335 1.44e-13 71.2
MS.gene006692.t1 MTR_3g036250 28.947 190 121 5 19 201 5 187 1.63e-13 71.2
MS.gene006692.t1 MTR_8g445780 31.188 202 122 8 11 203 6 199 2.14e-13 70.9
MS.gene006692.t1 MTR_7g088260 32.212 208 106 7 13 205 85 272 2.19e-13 71.2
MS.gene006692.t1 MTR_6g018660 27.762 353 197 14 1 324 1 324 2.73e-13 70.5
MS.gene006692.t1 MTR_1g090883 25.559 313 209 7 11 317 11 305 3.48e-13 70.1
MS.gene006692.t1 MTR_7g007080 29.688 192 122 4 18 201 3 189 3.61e-13 70.1
MS.gene006692.t1 MTR_2g007500 30.151 199 120 5 19 213 14 197 4.22e-13 69.7
MS.gene006692.t1 MTR_7g116580 27.575 301 162 10 17 280 1 282 4.73e-13 70.1
MS.gene006692.t1 MTR_3g023630 29.412 187 122 5 19 201 8 188 1.11e-12 68.6
MS.gene006692.t1 MTR_7g056447 30.049 203 132 5 18 217 8 203 1.19e-12 67.8
MS.gene006692.t1 MTR_4g119700 30.093 216 119 8 18 206 5 215 1.53e-12 68.9
MS.gene006692.t1 MTR_3g023270 27.778 216 112 6 10 206 3 193 1.75e-12 67.8
MS.gene006692.t1 MTR_1g115250 30.000 240 136 10 7 222 20 251 2.26e-12 68.2
MS.gene006692.t1 MTR_2g082860 46.341 82 41 2 7 87 14 93 2.28e-12 63.5
MS.gene006692.t1 MTR_3g105060 31.551 187 117 5 19 201 14 193 2.30e-12 67.8
MS.gene006692.t1 MTR_8g058965 27.551 294 174 13 10 278 4 283 2.72e-12 67.8
MS.gene006692.t1 MTR_8g017280 30.469 128 72 4 18 138 35 152 2.80e-12 67.0
MS.gene006692.t1 MTR_4g050930 24.286 350 209 14 6 337 16 327 3.09e-12 67.4
MS.gene006692.t1 MTR_8g017280 30.469 128 72 4 18 138 35 152 3.43e-12 67.4
MS.gene006692.t1 MTR_2g008310 30.808 198 118 5 19 208 2 188 3.91e-12 67.0
MS.gene006692.t1 MTR_4g092980 24.444 315 207 9 21 323 16 311 4.38e-12 67.4
MS.gene006692.t1 MTR_7g084080 26.923 260 163 9 13 260 11 255 4.73e-12 66.2
MS.gene006692.t1 MTR_5g021550 36.290 124 66 5 18 131 18 138 6.24e-12 63.5
MS.gene006692.t1 MTR_5g007410 31.429 210 119 8 21 215 28 227 6.62e-12 66.6
MS.gene006692.t1 MTR_4g050930 24.286 350 209 14 6 337 16 327 6.96e-12 66.6
MS.gene006692.t1 MTR_5g045510 30.435 184 119 5 21 201 14 191 6.97e-12 66.2
MS.gene006692.t1 MTR_0543s0010 31.016 187 113 8 18 201 85 258 7.04e-12 66.6
MS.gene006692.t1 MTR_0492s0020 31.016 187 113 8 18 201 85 258 7.23e-12 66.6
MS.gene006692.t1 MTR_1g011430 30.303 231 132 10 19 237 7 220 8.19e-12 65.9
MS.gene006692.t1 MTR_7g056433 29.648 199 118 5 16 203 9 196 9.64e-12 65.9
MS.gene006692.t1 MTR_8g077460 29.952 207 114 7 18 203 9 205 9.87e-12 65.9
MS.gene006692.t1 MTR_8g014260 28.615 325 177 17 18 316 15 310 1.02e-11 65.9
MS.gene006692.t1 MTR_3g108150 31.351 185 118 5 18 201 12 188 1.07e-11 65.9
MS.gene006692.t1 MTR_7g025650 28.704 216 122 7 18 206 18 228 1.47e-11 65.9
MS.gene006692.t1 MTR_8g014160 29.851 201 119 8 18 201 40 235 1.64e-11 65.5
MS.gene006692.t1 MTR_2g007360 26.667 270 129 9 19 271 12 229 1.76e-11 65.1
MS.gene006692.t1 MTR_3g026920 29.464 224 128 8 19 224 19 230 1.80e-11 65.1
MS.gene006692.t1 MTR_2g082800 28.761 226 147 6 8 228 18 234 1.84e-11 65.1
MS.gene006692.t1 MTR_2g007530 42.045 88 48 1 19 103 19 106 1.97e-11 64.7
MS.gene006692.t1 MTR_3g023440 26.791 321 194 13 17 323 1 294 2.41e-11 64.7
MS.gene006692.t1 MTR_2g007450 27.536 207 120 5 19 201 16 216 2.99e-11 64.7
MS.gene006692.t1 MTR_0227s0010 29.064 203 128 8 10 203 6 201 3.54e-11 63.9
MS.gene006692.t1 MTR_3g019220 26.205 332 204 12 18 335 25 329 3.91e-11 64.7
MS.gene006692.t1 MTR_7g055943 27.358 212 145 4 19 226 40 246 4.47e-11 63.9
MS.gene006692.t1 MTR_4g051480 25.726 241 154 10 1 228 9 237 4.90e-11 64.3
MS.gene006692.t1 MTR_4g092300 25.210 238 154 9 4 228 11 237 5.09e-11 64.3
MS.gene006692.t1 MTR_5g058000 28.571 196 111 5 19 201 8 187 5.23e-11 63.5
MS.gene006692.t1 MTR_3g107100 28.497 193 123 6 16 201 8 192 5.29e-11 63.5
MS.gene006692.t1 MTR_1g038760 28.054 221 131 8 10 221 6 207 5.73e-11 63.5
MS.gene006692.t1 MTR_3g036320 25.000 316 203 12 21 323 22 316 5.77e-11 63.5
MS.gene006692.t1 MTR_8g062270 28.571 203 127 4 16 203 13 212 5.80e-11 63.5
MS.gene006692.t1 MTR_1g053025 30.415 217 132 9 19 222 2 212 6.18e-11 63.5
MS.gene006692.t1 MTR_1g038760 28.054 221 131 8 10 221 6 207 6.70e-11 63.2
MS.gene006692.t1 MTR_7g032380 26.344 186 129 5 19 201 11 191 7.49e-11 63.2
MS.gene006692.t1 MTR_6g088700 23.734 316 214 8 16 323 11 307 7.91e-11 63.2
MS.gene006692.t1 MTR_5g092960 24.316 329 226 8 1 316 1 319 9.01e-11 63.2
MS.gene006692.t1 MTR_5g058100 29.293 198 122 6 12 201 2 189 9.47e-11 62.8
MS.gene006692.t1 MTR_2g007400 32.020 203 117 9 19 204 12 210 9.58e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006692.t1 AT5G53840 31.439 264 169 4 15 278 14 265 3.01e-24 103
MS.gene006692.t1 AT4G00315 33.040 227 138 6 19 234 2 225 5.21e-24 102
MS.gene006692.t1 AT4G14103 29.073 313 201 10 18 319 7 309 1.48e-23 100
MS.gene006692.t1 AT4G14103 29.073 313 201 10 18 319 7 309 1.48e-23 100
MS.gene006692.t1 AT4G14103 29.073 313 201 10 18 319 7 309 2.52e-23 100
MS.gene006692.t1 AT1G66290 29.808 312 202 8 12 319 22 320 5.01e-23 99.8
MS.gene006692.t1 AT1G55660 33.036 224 142 5 14 232 48 268 8.41e-23 98.2
MS.gene006692.t1 AT4G14096 29.967 307 199 10 18 319 7 302 2.64e-22 97.8
MS.gene006692.t1 AT4G14096 29.967 307 199 10 18 319 7 302 2.64e-22 97.8
MS.gene006692.t1 AT1G55660 33.036 224 142 5 14 232 48 268 2.78e-22 97.8
MS.gene006692.t1 AT3G26922 29.864 221 147 3 11 229 6 220 3.32e-22 95.5
MS.gene006692.t1 AT3G26922 29.864 221 147 3 11 229 6 220 3.32e-22 95.5
MS.gene006692.t1 AT3G59200 28.049 328 195 11 18 319 6 318 3.97e-21 93.2
MS.gene006692.t1 AT3G58880 27.273 330 189 13 17 319 1 306 8.41e-21 93.2
MS.gene006692.t1 AT3G59210 30.841 321 190 13 18 319 6 313 1.07e-20 93.2
MS.gene006692.t1 AT3G59210 30.841 321 190 13 18 319 6 313 1.07e-20 93.2
MS.gene006692.t1 AT3G59210 30.841 321 190 13 18 319 6 313 1.07e-20 93.2
MS.gene006692.t1 AT3G59210 30.841 321 190 13 18 319 6 313 1.07e-20 93.2
MS.gene006692.t1 AT3G59210 30.841 321 190 13 18 319 6 313 1.07e-20 93.2
MS.gene006692.t1 AT1G32375 30.516 213 140 3 19 227 2 210 1.08e-20 92.8
MS.gene006692.t1 AT1G32375 30.516 213 140 3 19 227 2 210 1.08e-20 92.8
MS.gene006692.t1 AT3G58860 27.832 309 198 11 19 319 7 298 1.09e-20 92.8
MS.gene006692.t1 AT3G59200 28.049 328 195 11 18 319 6 318 1.23e-20 93.2
MS.gene006692.t1 AT1G66300 27.937 315 194 9 19 319 29 324 1.35e-20 92.8
MS.gene006692.t1 AT1G58310 28.994 338 201 11 13 319 2 331 8.75e-20 90.5
MS.gene006692.t1 AT3G58900 27.660 329 193 11 19 319 2 313 1.12e-19 88.6
MS.gene006692.t1 AT3G58900 27.660 329 193 11 19 319 2 313 1.15e-19 88.6
MS.gene006692.t1 AT3G58900 27.660 329 193 11 19 319 2 313 1.15e-19 88.6
MS.gene006692.t1 AT4G13985 27.044 318 208 11 15 319 15 321 2.85e-19 89.0
MS.gene006692.t1 AT3G58900 27.660 329 193 11 19 319 2 313 4.50e-19 88.2
MS.gene006692.t1 AT4G10400 30.918 207 139 3 19 224 2 205 5.09e-19 87.8
MS.gene006692.t1 AT4G10400 30.918 207 139 3 19 224 2 205 5.09e-19 87.8
MS.gene006692.t1 AT4G10400 30.918 207 139 3 19 224 2 205 5.09e-19 87.8
MS.gene006692.t1 AT2G04230 34.101 217 132 5 18 227 12 224 9.86e-19 87.0
MS.gene006692.t1 AT4G15060 28.226 248 165 6 13 254 18 258 1.06e-18 87.0
MS.gene006692.t1 AT1G55030 29.224 219 142 4 12 227 2 210 1.15e-18 86.7
MS.gene006692.t1 AT1G55030 29.224 219 142 4 12 227 12 220 1.30e-18 86.7
MS.gene006692.t1 AT5G22660 27.597 308 211 5 18 321 12 311 1.48e-18 85.5
MS.gene006692.t1 AT5G56420 28.852 305 177 10 18 312 5 279 2.88e-18 85.5
MS.gene006692.t1 AT5G56420 28.852 305 177 10 18 312 5 279 2.88e-18 85.5
MS.gene006692.t1 AT5G56420 28.852 305 177 10 18 312 5 279 2.88e-18 85.5
MS.gene006692.t1 AT4G00160 30.876 217 140 4 18 229 15 226 3.50e-18 85.5
MS.gene006692.t1 AT3G59240 26.667 315 204 9 18 319 7 307 4.54e-18 85.5
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 4.69e-18 83.6
MS.gene006692.t1 AT3G59230 25.356 351 230 10 10 336 4 346 6.25e-18 85.1
MS.gene006692.t1 AT3G49150 26.814 317 219 8 18 328 15 324 7.63e-18 84.7
MS.gene006692.t1 AT3G59160 27.059 340 205 11 18 319 12 346 9.28e-18 84.3
MS.gene006692.t1 AT4G22280 29.924 264 160 7 19 274 2 248 1.17e-17 83.2
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 1.34e-17 83.2
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 1.34e-17 83.2
MS.gene006692.t1 AT4G22280 29.924 264 160 7 19 274 2 248 1.46e-17 83.6
MS.gene006692.t1 AT3G59170 27.035 344 203 12 18 319 6 343 1.49e-17 84.0
MS.gene006692.t1 AT5G44950 27.974 311 203 9 18 319 3 301 1.60e-17 83.6
MS.gene006692.t1 AT1G66310 28.963 328 206 11 1 319 1 310 1.63e-17 83.6
MS.gene006692.t1 AT1G51370 28.829 222 132 5 14 227 14 217 1.77e-17 82.8
MS.gene006692.t1 AT5G38590 28.788 330 207 9 19 339 2 312 1.95e-17 83.2
MS.gene006692.t1 AT5G38590 32.547 212 133 4 19 227 2 206 1.99e-17 81.6
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 20 312 2.36e-17 82.8
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 2.45e-17 82.8
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 2.45e-17 82.8
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 2.45e-17 82.8
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 2.45e-17 82.8
MS.gene006692.t1 AT1G06630 28.481 316 189 13 18 319 11 303 2.49e-17 83.2
MS.gene006692.t1 AT5G22720 30.556 252 148 8 18 258 22 257 2.57e-17 83.2
MS.gene006692.t1 AT1G51370 28.829 222 132 5 14 227 14 217 3.26e-17 82.4
MS.gene006692.t1 AT4G09920 28.261 230 157 4 19 247 2 224 3.91e-17 80.9
MS.gene006692.t1 AT4G09920 28.261 230 157 4 19 247 2 224 3.91e-17 80.9
MS.gene006692.t1 AT4G09920 28.261 230 157 4 19 247 2 224 3.91e-17 80.9
MS.gene006692.t1 AT5G22660 27.124 306 211 5 18 319 12 309 3.93e-17 82.4
MS.gene006692.t1 AT4G15060 28.395 243 162 6 16 254 170 404 4.12e-17 82.8
MS.gene006692.t1 AT1G51370 28.829 222 132 5 14 227 14 217 4.39e-17 82.0
MS.gene006692.t1 AT5G22670 26.490 302 216 2 18 319 10 305 4.49e-17 82.4
MS.gene006692.t1 AT4G09920 28.261 230 157 4 19 247 2 224 8.34e-17 80.5
MS.gene006692.t1 AT4G09920 28.261 230 157 4 19 247 2 224 8.34e-17 80.5
MS.gene006692.t1 AT2G42730 28.037 321 199 11 16 319 2 307 9.90e-17 81.3
MS.gene006692.t1 AT4G13965 29.108 213 137 3 19 227 10 212 2.88e-16 79.7
MS.gene006692.t1 AT4G26340 27.609 297 187 9 19 312 2 273 5.59e-16 79.0
MS.gene006692.t1 AT3G52680 31.646 237 142 8 1 227 1 227 5.67e-16 78.6
MS.gene006692.t1 AT1G13570 28.852 305 163 13 14 310 1 259 7.24e-16 77.4
MS.gene006692.t1 AT4G13960 27.586 319 198 13 19 319 2 305 9.31e-16 78.6
MS.gene006692.t1 AT4G13960 27.586 319 198 13 19 319 2 305 9.31e-16 78.6
MS.gene006692.t1 AT2G29930 28.783 337 175 14 10 319 4 302 1.08e-15 78.2
MS.gene006692.t1 AT2G29930 28.783 337 175 14 10 319 4 302 1.08e-15 78.2
MS.gene006692.t1 AT3G52680 32.203 236 142 8 1 227 1 227 1.18e-15 78.2
MS.gene006692.t1 AT3G44810 29.213 267 168 9 24 278 12 269 2.02e-15 77.4
MS.gene006692.t1 AT1G16930 26.994 326 215 9 19 334 15 327 2.40e-15 77.0
MS.gene006692.t1 AT1G16930 26.994 326 215 9 19 334 15 327 2.40e-15 77.0
MS.gene006692.t1 AT1G16930 26.994 326 215 9 19 334 15 327 2.40e-15 77.0
MS.gene006692.t1 AT1G13570 28.852 305 163 13 14 310 1 259 2.86e-15 76.6
MS.gene006692.t1 AT1G13570 28.852 305 163 13 14 310 1 259 2.86e-15 76.6
MS.gene006692.t1 AT5G56410 26.885 305 184 7 26 312 10 293 3.60e-15 76.6
MS.gene006692.t1 AT1G05080 27.829 327 208 10 18 340 12 314 6.12e-15 75.9
MS.gene006692.t1 AT5G02930 29.703 202 127 6 19 219 28 215 6.22e-15 75.9
MS.gene006692.t1 AT5G56690 29.048 210 140 4 21 224 4 210 6.45e-15 75.5
MS.gene006692.t1 AT5G38570 30.144 209 100 5 19 224 2 167 6.46e-15 75.5
MS.gene006692.t1 AT3G03040 23.837 344 219 13 19 336 2 328 6.49e-15 75.9
MS.gene006692.t1 AT5G56440 31.579 209 136 5 19 225 2 205 6.59e-15 75.9
MS.gene006692.t1 AT5G22700 26.724 348 216 11 10 339 34 360 7.02e-15 75.9
MS.gene006692.t1 AT5G27750 23.235 340 229 12 19 338 5 332 7.57e-15 75.1
MS.gene006692.t1 AT1G78750 28.438 320 195 12 19 319 18 322 8.82e-15 75.5
MS.gene006692.t1 AT1G78750 28.438 320 195 12 19 319 18 322 8.82e-15 75.5
MS.gene006692.t1 AT5G27750 23.599 339 229 12 19 338 5 332 8.84e-15 75.5
MS.gene006692.t1 AT3G26922 26.904 197 136 3 35 229 1 191 9.05e-15 73.9
MS.gene006692.t1 AT3G26922 26.904 197 136 3 35 229 1 191 9.05e-15 73.9
MS.gene006692.t1 AT5G52460 31.111 225 118 3 18 242 16 203 1.34e-14 74.3
MS.gene006692.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.36e-14 74.7
MS.gene006692.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.47e-14 74.7
MS.gene006692.t1 AT2G26030 24.684 316 208 12 19 319 4 304 1.47e-14 74.7
MS.gene006692.t1 AT3G50710 29.767 215 139 5 19 226 2 211 3.39e-14 73.6
MS.gene006692.t1 AT5G41630 25.141 354 224 12 13 336 6 348 3.80e-14 73.6
MS.gene006692.t1 AT5G44490 28.507 221 142 5 18 230 16 228 3.88e-14 73.6
MS.gene006692.t1 AT5G44490 28.507 221 142 5 18 230 16 228 4.06e-14 73.6
MS.gene006692.t1 AT5G44980 27.044 318 205 12 18 323 3 305 4.39e-14 72.4
MS.gene006692.t1 AT5G44980 27.044 318 205 12 18 323 3 305 4.39e-14 72.4
MS.gene006692.t1 AT5G22700 26.744 344 213 11 14 339 1 323 5.38e-14 72.8
MS.gene006692.t1 AT5G22700 26.744 344 213 11 14 339 1 323 5.38e-14 72.8
MS.gene006692.t1 AT5G22700 26.744 344 213 11 14 339 1 323 5.38e-14 72.8
MS.gene006692.t1 AT5G22700 26.744 344 213 11 14 339 1 323 5.38e-14 72.8
MS.gene006692.t1 AT1G78730 26.349 315 180 9 19 319 22 298 6.38e-14 72.8
MS.gene006692.t1 AT3G28410 23.636 330 193 11 8 319 19 307 6.49e-14 72.8
MS.gene006692.t1 AT1G69630 26.727 333 205 13 5 319 4 315 7.41e-14 72.8
MS.gene006692.t1 AT3G59190 25.148 338 207 13 10 319 4 323 9.15e-14 72.0
MS.gene006692.t1 AT3G49030 31.050 219 136 8 18 230 20 229 9.21e-14 72.0
MS.gene006692.t1 AT3G59190 24.294 354 222 13 10 335 4 339 9.66e-14 72.4
MS.gene006692.t1 AT5G25860 26.023 342 214 16 18 336 11 336 1.04e-13 72.0
MS.gene006692.t1 AT3G49030 31.050 219 136 8 18 230 20 229 1.42e-13 71.6
MS.gene006692.t1 AT4G27050 29.952 207 118 5 19 204 4 204 3.19e-13 70.9
MS.gene006692.t1 AT4G27050 29.952 207 118 5 19 204 4 204 3.19e-13 70.9
MS.gene006692.t1 AT4G27050 29.952 207 118 5 19 204 4 204 3.19e-13 70.9
MS.gene006692.t1 AT4G27050 29.952 207 118 5 19 204 4 204 3.19e-13 70.9
MS.gene006692.t1 AT4G27050 29.952 207 118 5 19 204 4 204 3.19e-13 70.9
MS.gene006692.t1 AT3G58960 28.173 323 206 14 19 330 2 309 3.39e-13 70.5
MS.gene006692.t1 AT5G53635 29.493 217 132 6 20 227 1 205 3.57e-13 70.5
MS.gene006692.t1 AT5G60610 30.275 218 138 5 19 232 2 209 5.47e-13 69.7
MS.gene006692.t1 AT5G60610 30.275 218 138 5 19 232 2 209 5.47e-13 69.7
MS.gene006692.t1 AT5G22730 27.974 311 205 9 18 318 27 328 6.89e-13 69.3
MS.gene006692.t1 AT5G22730 29.707 239 157 6 18 250 27 260 6.91e-13 69.7
MS.gene006692.t1 AT5G22730 29.707 239 157 6 18 250 27 260 6.91e-13 69.7
MS.gene006692.t1 AT2G26860 28.319 226 148 5 19 235 2 222 7.24e-13 69.3
MS.gene006692.t1 AT2G26860 28.319 226 148 5 19 235 2 222 7.24e-13 69.3
MS.gene006692.t1 AT3G51530 27.604 192 129 4 18 208 29 211 7.47e-13 69.7
MS.gene006692.t1 AT5G53640 28.497 193 116 5 18 203 21 198 8.27e-13 67.4
MS.gene006692.t1 AT3G49040 27.193 228 141 8 18 232 16 231 1.17e-12 68.2
MS.gene006692.t1 AT5G41830 24.412 340 209 12 18 326 12 334 1.47e-12 68.9
MS.gene006692.t1 AT5G22610 24.149 323 209 10 17 319 16 322 1.89e-12 68.6
MS.gene006692.t1 AT4G00320 26.023 342 201 12 18 326 12 334 2.03e-12 68.6
MS.gene006692.t1 AT3G44060 28.155 206 138 3 24 220 4 208 2.33e-12 68.2
MS.gene006692.t1 AT5G02700 29.126 206 125 7 7 208 17 205 2.72e-12 67.8
MS.gene006692.t1 AT5G50270 26.518 313 204 8 19 327 2 292 2.77e-12 67.0
MS.gene006692.t1 AT3G03030 24.534 322 216 12 19 319 2 317 4.86e-12 66.6
MS.gene006692.t1 AT2G42720 28.213 319 192 12 19 319 2 301 5.59e-12 67.0
MS.gene006692.t1 AT5G44980 26.710 307 198 12 18 312 3 294 7.54e-12 66.6
MS.gene006692.t1 AT5G44980 26.710 307 198 12 18 312 3 294 7.54e-12 66.6
MS.gene006692.t1 AT5G22700 26.552 290 181 8 10 285 34 305 9.00e-12 66.2
MS.gene006692.t1 AT4G26350 29.101 189 123 4 19 203 2 183 9.90e-12 66.2
MS.gene006692.t1 AT3G03030 24.534 322 216 12 19 319 2 317 1.02e-11 66.2
MS.gene006692.t1 AT1G78760 26.282 312 203 10 18 319 15 309 1.03e-11 66.2
MS.gene006692.t1 AT3G26930 27.000 300 190 7 18 313 20 294 1.09e-11 65.9
MS.gene006692.t1 AT3G42770 23.839 323 219 9 24 335 4 310 1.14e-11 66.2
MS.gene006692.t1 AT5G38396 24.848 330 200 13 19 319 2 312 1.36e-11 65.9
MS.gene006692.t1 AT5G41840 25.287 348 213 11 14 325 9 345 1.58e-11 65.9
MS.gene006692.t1 AT5G50270 27.027 296 190 8 19 310 2 275 1.58e-11 65.5
MS.gene006692.t1 AT5G44960 25.969 258 161 11 19 263 5 245 1.69e-11 65.5
MS.gene006692.t1 AT5G56810 29.353 201 126 8 11 203 5 197 2.32e-11 64.3
MS.gene006692.t1 AT5G22610 24.051 316 188 11 17 319 16 292 2.34e-11 65.1
MS.gene006692.t1 AT1G22000 30.317 221 129 5 21 237 31 230 2.51e-11 65.1
MS.gene006692.t1 AT5G56810 29.353 201 126 8 11 203 5 197 2.59e-11 64.7
MS.gene006692.t1 AT5G02910 46.667 60 32 0 16 75 8 67 3.05e-11 64.3
MS.gene006692.t1 AT5G02910 46.667 60 32 0 16 75 8 67 3.15e-11 64.3
MS.gene006692.t1 AT5G02910 46.667 60 32 0 16 75 8 67 5.06e-11 63.9
MS.gene006692.t1 AT3G58980 26.032 315 192 11 19 312 2 296 5.65e-11 63.9
MS.gene006692.t1 AT1G64540 26.398 322 195 11 18 319 4 303 6.83e-11 63.5
MS.gene006692.t1 AT1G64540 26.398 322 195 11 18 319 4 303 6.83e-11 63.5

Find 49 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTATCCTTGACGATAT+TGG 0.202752 4.1:+26258824 None:intergenic
ATGTTGCGATTTCCACATTA+AGG 0.206909 4.1:-26259175 MS.gene006692:CDS
AGAGGGATAAATTCTATTAT+TGG 0.223816 4.1:+26259044 None:intergenic
ACTTGAAATCTGAGAAACTA+TGG 0.286675 4.1:+26259396 None:intergenic
AGAAGTTCTAACGGCGTCTT+TGG 0.315218 4.1:+26259706 None:intergenic
TTAGCAGCAGAAGCTATTAT+AGG 0.373178 4.1:+26259479 None:intergenic
CTTTGGATCTTATGCACATC+TGG 0.376653 4.1:+26259809 None:intergenic
TGTCACCCACATTATGCCTT+TGG 0.377548 4.1:+26259792 None:intergenic
TGTTGCGATTTCCACATTAA+GGG 0.422533 4.1:-26259174 MS.gene006692:CDS
ACAATGGAGGTCAGGTTAAG+AGG 0.430331 4.1:+26259026 None:intergenic
CTAGAGGTAGCACTCTCAAT+AGG 0.433502 4.1:+26258803 None:intergenic
TACACAATGCCAACTCTTGT+AGG 0.436890 4.1:+26259228 None:intergenic
CTCCATTGTTGTTGCATGTG+TGG 0.461254 4.1:-26259012 MS.gene006692:CDS
AATTGCCTCTTTGATATTGT+GGG 0.464505 4.1:-26259584 MS.gene006692:CDS
AAAGATCTTCAGCTTTCTCT+AGG 0.469504 4.1:-26259446 MS.gene006692:CDS
GGAAACTCTTGAGGTATGTA+TGG 0.483097 4.1:-26258877 MS.gene006692:CDS
GAATTGCCTCTTTGATATTG+TGG 0.495488 4.1:-26259585 MS.gene006692:CDS
AGAAAGAATATAATGAAGAA+TGG 0.504163 4.1:+26259739 None:intergenic
ACTAGCAATGTCTTCACACT+AGG 0.511429 4.1:+26259311 None:intergenic
AATGCCAACTCTTGTAGGAC+AGG 0.519062 4.1:+26259233 None:intergenic
ATATAATGAAGAATGGCATC+GGG 0.519888 4.1:+26259746 None:intergenic
AACTGACTTCTCATTTGCAA+AGG 0.521307 4.1:+26259277 None:intergenic
CAATGGAGGTCAGGTTAAGA+GGG 0.521610 4.1:+26259027 None:intergenic
CTTGAAATCTGAGAAACTAT+GGG 0.524464 4.1:+26259397 None:intergenic
AATATAATGAAGAATGGCAT+CGG 0.525790 4.1:+26259745 None:intergenic
ATGCAACAACAATGGAGGTC+AGG 0.531268 4.1:+26259018 None:intergenic
CGTGCAATTAAGTTATTGAG+TGG 0.564973 4.1:-26258933 MS.gene006692:CDS
TAAGATCCAAAGGCATAATG+TGG 0.572424 4.1:-26259798 MS.gene006692:CDS
CTAGGGAAACGAATACGACT+AGG 0.579790 4.1:+26259329 None:intergenic
GTGCCCTGTCCTACAAGAGT+TGG 0.580632 4.1:-26259237 MS.gene006692:CDS
CTTCTATATTATCATCAAAG+TGG 0.581389 4.1:-26259688 MS.gene006692:CDS
CAAATCTCTCAAAATATCGA+AGG 0.592683 4.1:-26258898 MS.gene006692:CDS
ATGAACTTCAAAATCAAAGA+CGG 0.596207 4.1:+26259643 None:intergenic
ATCCACACATGCAACAACAA+TGG 0.604459 4.1:+26259010 None:intergenic
CTAGCAATGTCTTCACACTA+GGG 0.604984 4.1:+26259312 None:intergenic
AATGATCAAGACCCTTAATG+TGG 0.609271 4.1:+26259163 None:intergenic
ATCGTCCCACAATATCAAAG+AGG 0.616712 4.1:+26259579 None:intergenic
CATCAAAGTGGAGGTACCTG+TGG 0.618068 4.1:-26259676 MS.gene006692:CDS
AATATCGAAGGAAACTCTTG+AGG 0.622107 4.1:-26258886 MS.gene006692:CDS
CAGATGTGCATAAGATCCAA+AGG 0.627449 4.1:-26259808 MS.gene006692:CDS
TGATAATATAGAAGTTCTAA+CGG 0.635169 4.1:+26259697 None:intergenic
AGACGGATAATTGAGTCCAC+AGG 0.649084 4.1:+26259660 None:intergenic
AGACTCTGCGTTAAAATACG+TGG 0.651671 4.1:-26259530 MS.gene006692:CDS
AAGATCCAAAGGCATAATGT+GGG 0.661125 4.1:-26259797 MS.gene006692:CDS
CACACATGCAACAACAATGG+AGG 0.664413 4.1:+26259013 None:intergenic
CTATATTATCATCAAAGTGG+AGG 0.668393 4.1:-26259685 MS.gene006692:CDS
TTGAAATCTGAGAAACTATG+GGG 0.690741 4.1:+26259398 None:intergenic
ATGCCAACTCTTGTAGGACA+GGG 0.696929 4.1:+26259234 None:intergenic
TAATTGCACGATGAGCAGCA+CGG 0.762315 4.1:+26258946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAGAATATAATGAAGAA+TGG + chr4.1:26258900-26258919 None:intergenic 20.0%
!!! TGATAATATAGAAGTTCTAA+CGG + chr4.1:26258942-26258961 None:intergenic 20.0%
! AATATAATGAAGAATGGCAT+CGG + chr4.1:26258894-26258913 None:intergenic 25.0%
! AGAGGGATAAATTCTATTAT+TGG + chr4.1:26259595-26259614 None:intergenic 25.0%
! ATGAACTTCAAAATCAAAGA+CGG + chr4.1:26258996-26259015 None:intergenic 25.0%
! CTTCTATATTATCATCAAAG+TGG - chr4.1:26258948-26258967 MS.gene006692:CDS 25.0%
!!! CTGTCATTTTAAGAACATAA+AGG - chr4.1:26259432-26259451 MS.gene006692:CDS 25.0%
!!! CTTTGATTTTGAAGTTCATA+AGG - chr4.1:26258997-26259016 MS.gene006692:CDS 25.0%
AATTGCCTCTTTGATATTGT+GGG - chr4.1:26259052-26259071 MS.gene006692:CDS 30.0%
ACTTGAAATCTGAGAAACTA+TGG + chr4.1:26259243-26259262 None:intergenic 30.0%
ATATAATGAAGAATGGCATC+GGG + chr4.1:26258893-26258912 None:intergenic 30.0%
CAAATCTCTCAAAATATCGA+AGG - chr4.1:26259738-26259757 MS.gene006692:CDS 30.0%
CTATATTATCATCAAAGTGG+AGG - chr4.1:26258951-26258970 MS.gene006692:CDS 30.0%
CTTGAAATCTGAGAAACTAT+GGG + chr4.1:26259242-26259261 None:intergenic 30.0%
TTGAAATCTGAGAAACTATG+GGG + chr4.1:26259241-26259260 None:intergenic 30.0%
! TTTTCTTTCCAATATCGTCA+AGG - chr4.1:26259804-26259823 MS.gene006692:CDS 30.0%
AAAGATCTTCAGCTTTCTCT+AGG - chr4.1:26259190-26259209 MS.gene006692:CDS 35.0%
AATATCGAAGGAAACTCTTG+AGG - chr4.1:26259750-26259769 MS.gene006692:CDS 35.0%
AATGATCAAGACCCTTAATG+TGG + chr4.1:26259476-26259495 None:intergenic 35.0%
ATGTTGCGATTTCCACATTA+AGG - chr4.1:26259461-26259480 MS.gene006692:CDS 35.0%
CGTGCAATTAAGTTATTGAG+TGG - chr4.1:26259703-26259722 MS.gene006692:CDS 35.0%
GAATTGCCTCTTTGATATTG+TGG - chr4.1:26259051-26259070 MS.gene006692:CDS 35.0%
TGTTGCGATTTCCACATTAA+GGG - chr4.1:26259462-26259481 MS.gene006692:CDS 35.0%
TTAGCAGCAGAAGCTATTAT+AGG + chr4.1:26259160-26259179 None:intergenic 35.0%
! AACTGACTTCTCATTTGCAA+AGG + chr4.1:26259362-26259381 None:intergenic 35.0%
! AAGATCCAAAGGCATAATGT+GGG - chr4.1:26258839-26258858 MS.gene006692:CDS 35.0%
! TAAGATCCAAAGGCATAATG+TGG - chr4.1:26258838-26258857 MS.gene006692:CDS 35.0%
ACTAGCAATGTCTTCACACT+AGG + chr4.1:26259328-26259347 None:intergenic 40.0%
AGACTCTGCGTTAAAATACG+TGG - chr4.1:26259106-26259125 MS.gene006692:CDS 40.0%
ATCCACACATGCAACAACAA+TGG + chr4.1:26259629-26259648 None:intergenic 40.0%
ATCGTCCCACAATATCAAAG+AGG + chr4.1:26259060-26259079 None:intergenic 40.0%
CAGATGTGCATAAGATCCAA+AGG - chr4.1:26258828-26258847 MS.gene006692:CDS 40.0%
CTAGCAATGTCTTCACACTA+GGG + chr4.1:26259327-26259346 None:intergenic 40.0%
CTTTGGATCTTATGCACATC+TGG + chr4.1:26258830-26258849 None:intergenic 40.0%
GGAAACTCTTGAGGTATGTA+TGG - chr4.1:26259759-26259778 MS.gene006692:CDS 40.0%
GGCATTATCCTTGACGATAT+TGG + chr4.1:26259815-26259834 None:intergenic 40.0%
TACACAATGCCAACTCTTGT+AGG + chr4.1:26259411-26259430 None:intergenic 40.0%
! CAGTTCAACGTCTTTTCTCT+GGG - chr4.1:26259377-26259396 MS.gene006692:CDS 40.0%
! TCAGTTCAACGTCTTTTCTC+TGG - chr4.1:26259376-26259395 MS.gene006692:CDS 40.0%
!! TGGATTGCTTTTGCAGCTTA+AGG + chr4.1:26259575-26259594 None:intergenic 40.0%
!!! TCGCTGACTTCTGATCTTTT+TGG + chr4.1:26259033-26259052 None:intergenic 40.0%
AATGCCAACTCTTGTAGGAC+AGG + chr4.1:26259406-26259425 None:intergenic 45.0%
ACAATGGAGGTCAGGTTAAG+AGG + chr4.1:26259613-26259632 None:intergenic 45.0%
AGACGGATAATTGAGTCCAC+AGG + chr4.1:26258979-26258998 None:intergenic 45.0%
ATGCAACAACAATGGAGGTC+AGG + chr4.1:26259621-26259640 None:intergenic 45.0%
ATGCCAACTCTTGTAGGACA+GGG + chr4.1:26259405-26259424 None:intergenic 45.0%
CAATGGAGGTCAGGTTAAGA+GGG + chr4.1:26259612-26259631 None:intergenic 45.0%
CACACATGCAACAACAATGG+AGG + chr4.1:26259626-26259645 None:intergenic 45.0%
CTAGGGAAACGAATACGACT+AGG + chr4.1:26259310-26259329 None:intergenic 45.0%
TAATTGCACGATGAGCAGCA+CGG + chr4.1:26259693-26259712 None:intergenic 45.0%
TGTCACCCACATTATGCCTT+TGG + chr4.1:26258847-26258866 None:intergenic 45.0%
! AGAAGTTCTAACGGCGTCTT+TGG + chr4.1:26258933-26258952 None:intergenic 45.0%
! CTCCATTGTTGTTGCATGTG+TGG - chr4.1:26259624-26259643 MS.gene006692:CDS 45.0%
!! CATCAAAGTGGAGGTACCTG+TGG - chr4.1:26258960-26258979 MS.gene006692:CDS 50.0%
GTGCCCTGTCCTACAAGAGT+TGG - chr4.1:26259399-26259418 MS.gene006692:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26258818 26259840 26258818 ID=MS.gene006692
chr4.1 mRNA 26258818 26259840 26258818 ID=MS.gene006692.t1;Parent=MS.gene006692
chr4.1 exon 26258818 26259840 26258818 ID=MS.gene006692.t1.exon1;Parent=MS.gene006692.t1
chr4.1 CDS 26258818 26259840 26258818 ID=cds.MS.gene006692.t1;Parent=MS.gene006692.t1
Gene Sequence

>MS.gene006692

ATGTCATCACCAGATGTGCATAAGATCCAAAGGCATAATGTGGGTGACATGAAAGATATAATAAGTGACTTGCCCGATGCCATTCTTCATTATATTCTTTCTTTACTCTCTACCAAAGACGCCGTTAGAACTTCTATATTATCATCAAAGTGGAGGTACCTGTGGACTCAATTATCCGTCTTTGATTTTGAAGTTCATAAGGATGACTCGAACCAAAAAGATCAGAAGTCAGCGAATTGCCTCTTTGATATTGTGGGACGATTAATGCACAACTCTAATTGTATAGAAAGACTCTGCGTTAAAATACGTGGAATTACTGTTGATGCATACAAAATTAGTCCTATAATAGCTTCTGCTGCTAAGCACAAAGTTAAAGATCTTCAGCTTTCTCTAGGTGATGTAAGTAGTAAGTGTGTGTTACCCCATAGTTTCTCAGATTTCAAGTCATTGACGAAACTGTGTTTAGAACTCAAGTTCACTCTATATATTCCTAGTCGTATTCGTTTCCCTAGTGTGAAGACATTGCTAGTTGTAGATGTTACCTTTGCAAATGAGAAGTCAGTTCAACGTCTTTTCTCTGGGTGCCCTGTCCTACAAGAGTTGGCATTGTGTAACTGTCATTTTAAGAACATAAAGGAGATCAATGTTGCGATTTCCACATTAAGGGTCTTGATCATTCATTTTGACTTCGTTTGTCTAAATTATGATCAGTTTGATAAATTCATAGTCAAGATTGATGCTGTGAATCTTTTATCCTTAAGCTGCAAAAGCAATCCAATAATAGAATTTATCCCTCTTAACCTGACCTCCATTGTTGTTGCATGTGTGGATCTCACTAATAAATATGCAGAACATGTAGCACATTTTGCTCACCGTGCTGCTCATCGTGCAATTAAGTTATTGAGTGGACTTAATAGTGTCAAATCTCTCAAAATATCGAAGGAAACTCTTGAGGTATGTATGGTTGTTCGCTCATCTTCTTTTTCTTTTCTTTCCAATATCGTCAAGGATAATGCCTATTGA

Protein sequence

>MS.gene006692.t1

MSSPDVHKIQRHNVGDMKDIISDLPDAILHYILSLLSTKDAVRTSILSSKWRYLWTQLSVFDFEVHKDDSNQKDQKSANCLFDIVGRLMHNSNCIERLCVKIRGITVDAYKISPIIASAAKHKVKDLQLSLGDVSSKCVLPHSFSDFKSLTKLCLELKFTLYIPSRIRFPSVKTLLVVDVTFANEKSVQRLFSGCPVLQELALCNCHFKNIKEINVAISTLRVLIIHFDFVCLNYDQFDKFIVKIDAVNLLSLSCKSNPIIEFIPLNLTSIVVACVDLTNKYAEHVAHFAHRAAHRAIKLLSGLNSVKSLKISKETLEVCMVVRSSSFSFLSNIVKDNAY