AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032861


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032861.t1 MTR_3g048290 72.961 466 117 3 1 459 1 464 0.0 656
MS.gene032861.t1 MTR_4g080787 68.443 469 132 4 1 459 1 463 0.0 609
MS.gene032861.t1 MTR_4g080773 65.458 469 149 3 1 459 1 466 0.0 578
MS.gene032861.t1 MTR_4g080773 65.458 469 149 3 1 459 1 466 0.0 578
MS.gene032861.t1 MTR_4g080807 60.894 358 104 2 93 450 1 322 4.63e-138 403
MS.gene032861.t1 MTR_4g080590 48.590 461 221 8 1 457 1 449 7.41e-126 373
MS.gene032861.t1 MTR_5g039950 43.777 466 208 8 1 459 1 419 2.07e-107 325
MS.gene032861.t1 MTR_4g080590 50.133 377 172 8 1 373 1 365 2.93e-101 308
MS.gene032861.t1 MTR_4g130200 41.957 460 197 4 1 459 1 391 3.05e-100 305
MS.gene032861.t1 MTR_7g023310 44.612 464 233 10 6 459 7 456 1.50e-96 298
MS.gene032861.t1 MTR_5g039970 50.000 328 150 7 5 324 1 322 1.76e-86 268
MS.gene032861.t1 MTR_7g039630 42.932 382 170 6 1 373 1 343 4.04e-81 254
MS.gene032861.t1 MTR_2g094750 42.819 376 180 11 22 369 92 460 4.06e-74 241
MS.gene032861.t1 MTR_4g081030 38.411 453 201 9 13 459 7 387 1.64e-71 231
MS.gene032861.t1 MTR_7g023330 36.087 460 221 10 6 459 3 395 2.78e-69 226
MS.gene032861.t1 MTR_4g080813 62.353 85 29 1 5 86 1 85 1.06e-30 114
MS.gene032861.t1 MTR_8g467800 26.596 470 294 14 12 459 12 452 2.00e-30 123
MS.gene032861.t1 MTR_4g032730 26.328 433 267 12 20 419 15 428 1.18e-26 112
MS.gene032861.t1 MTR_2g072530 25.115 434 297 12 20 442 13 429 8.66e-26 109
MS.gene032861.t1 MTR_8g467800 28.664 307 202 6 12 314 12 305 3.83e-25 106
MS.gene032861.t1 MTR_5g005690 24.717 441 283 11 24 428 25 452 1.79e-24 106
MS.gene032861.t1 MTR_7g094030 25.785 446 285 16 19 442 27 448 3.34e-22 99.4
MS.gene032861.t1 MTR_5g084070 28.140 430 259 13 11 428 4 395 3.92e-22 99.0
MS.gene032861.t1 MTR_1g115250 25.503 447 281 18 11 441 20 430 8.19e-22 97.8
MS.gene032861.t1 MTR_5g080710 26.118 425 276 13 12 428 27 421 1.52e-21 97.4
MS.gene032861.t1 MTR_1g082260 38.514 148 82 3 85 227 32 175 8.43e-21 90.1
MS.gene032861.t1 MTR_8g062270 28.000 425 257 18 20 419 16 416 1.06e-20 94.7
MS.gene032861.t1 MTR_2g094450 37.297 185 96 6 200 380 31 199 1.39e-20 90.1
MS.gene032861.t1 MTR_1g090883 27.222 360 229 12 20 368 19 356 1.24e-18 87.8
MS.gene032861.t1 MTR_2g005990 32.243 214 119 6 20 219 6 207 1.79e-18 87.4
MS.gene032861.t1 MTR_8g468840 26.914 431 278 17 15 427 9 420 2.38e-18 87.4
MS.gene032861.t1 MTR_4g056040 27.556 450 267 18 20 427 9 441 8.50e-18 86.3
MS.gene032861.t1 MTR_2g072730 25.664 452 260 19 6 422 6 416 1.18e-17 85.5
MS.gene032861.t1 MTR_2g072720 26.852 432 265 19 11 419 31 434 1.33e-17 85.5
MS.gene032861.t1 MTR_2g007500 26.299 308 181 10 20 312 14 290 7.93e-17 81.6
MS.gene032861.t1 MTR_4g055990 26.059 472 258 20 20 427 9 453 1.14e-16 82.8
MS.gene032861.t1 MTR_4g055990 26.059 472 258 20 20 427 9 453 1.70e-16 82.0
MS.gene032861.t1 MTR_4g056020 26.977 430 265 16 20 427 9 411 2.94e-16 81.3
MS.gene032861.t1 MTR_1g038710 25.349 430 278 15 20 427 19 427 4.13e-16 80.9
MS.gene032861.t1 MTR_4g056030 26.196 439 281 16 20 439 9 423 5.10e-16 80.5
MS.gene032861.t1 MTR_8g469020 25.821 457 229 21 20 419 7 410 6.14e-16 80.1
MS.gene032861.t1 MTR_4g056070 29.471 397 213 18 20 368 9 386 1.06e-15 79.3
MS.gene032861.t1 MTR_4g032845 25.180 417 277 15 18 418 1 398 1.13e-15 79.3
MS.gene032861.t1 MTR_8g014160 24.605 443 254 15 19 450 40 413 1.15e-15 79.3
MS.gene032861.t1 MTR_2g036470 23.129 441 227 15 14 427 8 363 1.52e-15 78.6
MS.gene032861.t1 MTR_7g115270 29.902 204 116 6 19 208 11 201 1.67e-15 78.6
MS.gene032861.t1 MTR_3g023270 30.172 232 131 7 13 232 1 213 1.87e-15 77.8
MS.gene032861.t1 MTR_2g083840 26.570 414 270 16 20 419 21 414 2.50e-15 78.2
MS.gene032861.t1 MTR_3g023630 22.782 417 234 14 20 427 8 345 5.05e-15 76.6
MS.gene032861.t1 MTR_8g058965 25.467 428 272 14 17 419 10 415 5.44e-15 77.4
MS.gene032861.t1 MTR_3g108150 24.941 421 238 16 19 433 12 360 9.63e-15 76.3
MS.gene032861.t1 MTR_1g038760 26.590 346 213 13 14 346 6 323 1.25e-14 75.5
MS.gene032861.t1 MTR_5g092960 26.869 428 263 16 20 419 19 424 1.39e-14 75.9
MS.gene032861.t1 MTR_1g038760 26.590 346 213 13 14 346 6 323 1.43e-14 75.5
MS.gene032861.t1 MTR_4g050940 25.467 428 247 16 20 408 67 461 2.02e-14 75.9
MS.gene032861.t1 MTR_4g039440 25.236 424 226 15 17 427 31 376 2.05e-14 75.5
MS.gene032861.t1 MTR_8g062080 25.503 447 261 18 20 441 23 422 2.34e-14 75.5
MS.gene032861.t1 MTR_2g082800 24.645 422 280 14 12 424 18 410 2.36e-14 75.1
MS.gene032861.t1 MTR_2g007450 27.706 231 124 6 4 209 6 218 3.54e-14 74.7
MS.gene032861.t1 MTR_2g082850 26.121 379 241 16 6 364 4 363 4.99e-14 73.9
MS.gene032861.t1 MTR_4g055580 25.591 465 287 15 20 439 100 550 5.47e-14 74.7
MS.gene032861.t1 MTR_3g023330 28.755 233 146 6 12 235 2 223 5.69e-14 73.6
MS.gene032861.t1 MTR_0049s0110 24.466 421 263 15 20 427 8 386 5.76e-14 73.9
MS.gene032861.t1 MTR_6g088700 24.251 334 232 10 14 341 8 326 6.40e-14 73.6
MS.gene032861.t1 MTR_4g092430 23.341 437 287 15 19 435 42 450 6.55e-14 73.9
MS.gene032861.t1 MTR_7g007080 25.176 425 228 16 19 427 3 353 8.52e-14 73.2
MS.gene032861.t1 MTR_4g092430 24.484 339 217 11 19 341 42 357 8.56e-14 73.6
MS.gene032861.t1 MTR_8g058970 25.862 464 276 19 7 427 4 442 9.28e-14 73.6
MS.gene032861.t1 MTR_3g108560 23.666 431 236 14 19 438 19 367 9.71e-14 73.2
MS.gene032861.t1 MTR_6g009020 26.862 376 222 15 6 358 5 350 9.72e-14 72.8
MS.gene032861.t1 MTR_2g090845 25.568 352 234 10 19 357 13 349 9.98e-14 72.8
MS.gene032861.t1 MTR_8g468810 27.759 299 192 13 20 310 25 307 1.39e-13 72.0
MS.gene032861.t1 MTR_4g047950 25.798 376 244 14 14 373 7 363 1.43e-13 72.4
MS.gene032861.t1 MTR_2g007360 30.769 195 97 6 20 209 12 173 1.44e-13 72.4
MS.gene032861.t1 MTR_8g468810 27.759 299 192 13 20 310 25 307 1.73e-13 72.0
MS.gene032861.t1 MTR_8g468810 27.759 299 192 13 20 310 25 307 1.75e-13 71.6
MS.gene032861.t1 MTR_8g468810 27.759 299 192 13 20 310 25 307 1.84e-13 72.0
MS.gene032861.t1 MTR_8g468810 24.769 432 253 18 20 417 25 418 1.87e-13 72.4
MS.gene032861.t1 MTR_7g098510 28.936 235 141 10 6 230 4 222 2.23e-13 72.0
MS.gene032861.t1 MTR_4g050250 25.754 431 245 18 20 406 21 420 2.49e-13 72.0
MS.gene032861.t1 MTR_7g056433 31.683 202 127 7 11 209 3 196 3.86e-13 71.2
MS.gene032861.t1 MTR_8g062310 24.819 415 245 17 20 419 25 387 4.18e-13 71.2
MS.gene032861.t1 MTR_5g087940 26.522 230 147 4 7 232 13 224 4.53e-13 71.2
MS.gene032861.t1 MTR_3g105060 27.931 290 184 12 20 297 14 290 4.99e-13 70.9
MS.gene032861.t1 MTR_6g040270 30.348 201 109 7 22 210 10 191 5.76e-13 70.5
MS.gene032861.t1 MTR_3g099830 30.049 203 106 6 20 213 12 187 9.36e-13 70.1
MS.gene032861.t1 MTR_3g108560 29.744 195 112 6 19 208 19 193 9.52e-13 69.3
MS.gene032861.t1 MTR_3g463820 27.928 222 144 6 19 232 12 225 1.25e-12 68.6
MS.gene032861.t1 MTR_7g056447 30.412 194 110 6 20 205 9 185 1.40e-12 68.6
MS.gene032861.t1 MTR_8g066650 27.273 330 214 11 20 341 80 391 1.41e-12 69.7
MS.gene032861.t1 MTR_5g044860 24.566 346 224 11 11 341 21 344 1.42e-12 69.7
MS.gene032861.t1 MTR_4g045900 23.579 475 285 21 20 432 26 484 1.43e-12 70.1
MS.gene032861.t1 MTR_3g019200 25.796 314 204 9 17 320 5 299 1.48e-12 69.3
MS.gene032861.t1 MTR_8g468910 25.962 312 198 9 17 312 45 339 1.48e-12 69.7
MS.gene032861.t1 MTR_1g115245 26.941 219 118 9 19 222 25 216 1.87e-12 68.6
MS.gene032861.t1 MTR_0492s0020 29.596 223 121 9 19 230 85 282 2.73e-12 68.9
MS.gene032861.t1 MTR_5g044800 24.566 346 224 11 11 341 21 344 2.95e-12 68.6
MS.gene032861.t1 MTR_0543s0010 29.596 223 121 9 19 230 85 282 3.22e-12 68.6
MS.gene032861.t1 MTR_5g045510 28.866 194 120 5 20 208 12 192 3.54e-12 68.2
MS.gene032861.t1 MTR_7g021630 25.656 343 222 10 19 352 16 334 3.60e-12 68.2
MS.gene032861.t1 MTR_7g021630 25.656 343 222 10 19 352 16 334 3.86e-12 67.8
MS.gene032861.t1 MTR_0049s0110 25.070 355 218 13 20 368 8 320 3.94e-12 67.8
MS.gene032861.t1 MTR_0049s0110 25.070 355 218 13 20 368 8 320 4.28e-12 67.8
MS.gene032861.t1 MTR_5g038430 27.442 215 147 6 20 232 96 303 4.29e-12 68.6
MS.gene032861.t1 MTR_1089s0010 28.111 217 131 6 20 227 8 208 5.09e-12 67.8
MS.gene032861.t1 MTR_8g468760 25.216 464 271 17 20 460 9 419 6.86e-12 67.4
MS.gene032861.t1 MTR_3g019220 26.198 313 202 9 19 321 25 318 9.42e-12 67.8
MS.gene032861.t1 MTR_5g008920 29.167 216 85 6 21 207 13 189 1.03e-11 66.6
MS.gene032861.t1 MTR_5g021550 58.696 46 19 0 19 64 18 63 1.09e-11 63.5
MS.gene032861.t1 MTR_3g107120 30.348 201 122 7 20 208 9 203 1.31e-11 66.6
MS.gene032861.t1 MTR_3g023470 25.872 344 223 11 12 341 2 327 1.57e-11 66.2
MS.gene032861.t1 MTR_4g093690 28.309 272 171 10 20 282 18 274 2.10e-11 64.7
MS.gene032861.t1 MTR_7g098480 28.378 222 121 7 6 212 4 202 2.19e-11 66.2
MS.gene032861.t1 MTR_2g082780 24.757 206 139 7 24 224 16 210 2.39e-11 63.5
MS.gene032861.t1 MTR_4g092300 26.923 234 149 7 12 234 15 237 2.58e-11 66.2
MS.gene032861.t1 MTR_5g092960 28.184 369 221 15 20 366 19 365 2.67e-11 65.5
MS.gene032861.t1 MTR_4g051480 26.923 234 149 7 12 234 15 237 2.81e-11 66.2
MS.gene032861.t1 MTR_3g036320 26.316 342 202 15 22 341 22 335 2.96e-11 65.1
MS.gene032861.t1 MTR_4g092980 25.148 338 212 13 22 341 16 330 3.59e-11 65.5
MS.gene032861.t1 MTR_7g033470 50.000 58 29 0 20 77 14 71 4.38e-11 61.2
MS.gene032861.t1 MTR_5g073420 25.614 285 169 11 20 289 11 267 4.56e-11 64.7
MS.gene032861.t1 MTR_7g098570 28.311 219 135 7 20 230 20 224 4.74e-11 65.1
MS.gene032861.t1 MTR_6g088705 27.556 225 128 8 19 224 18 226 5.03e-11 63.2
MS.gene032861.t1 MTR_2g008310 30.097 206 128 5 20 221 2 195 5.45e-11 64.7
MS.gene032861.t1 MTR_1g090900 28.235 170 112 4 20 188 11 171 6.19e-11 62.0
MS.gene032861.t1 MTR_7g060470 27.136 199 125 5 18 208 1 187 6.24e-11 64.3
MS.gene032861.t1 MTR_8g014290 50.000 50 25 0 19 68 9 58 6.46e-11 61.2
MS.gene032861.t1 MTR_2g007100 56.818 44 19 0 20 63 2 45 6.72e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032861.t1 AT1G66290 29.138 429 264 15 20 434 29 431 1.45e-32 129
MS.gene032861.t1 AT4G14096 27.729 458 297 18 20 459 8 449 2.83e-30 122
MS.gene032861.t1 AT4G14096 27.729 458 297 18 20 459 8 449 2.83e-30 122
MS.gene032861.t1 AT3G58860 26.950 423 273 15 20 427 7 408 8.09e-30 121
MS.gene032861.t1 AT1G66300 26.869 428 266 13 20 428 29 428 6.05e-29 119
MS.gene032861.t1 AT3G59200 27.556 450 261 16 20 428 7 432 1.38e-27 115
MS.gene032861.t1 AT1G78750 26.905 420 284 11 20 427 18 426 4.90e-27 113
MS.gene032861.t1 AT1G78750 26.905 420 284 11 20 427 18 426 4.90e-27 113
MS.gene032861.t1 AT3G59200 29.365 378 217 14 20 368 7 363 1.45e-26 110
MS.gene032861.t1 AT4G00315 31.390 223 142 5 20 238 2 217 2.45e-26 111
MS.gene032861.t1 AT5G38396 25.828 453 281 17 20 438 2 433 2.75e-26 111
MS.gene032861.t1 AT1G55660 26.027 438 269 13 17 427 50 459 4.23e-26 111
MS.gene032861.t1 AT3G59210 26.000 450 292 14 20 441 7 443 7.00e-26 110
MS.gene032861.t1 AT3G59210 26.000 450 292 14 20 441 7 443 7.00e-26 110
MS.gene032861.t1 AT3G59210 26.000 450 292 14 20 441 7 443 7.00e-26 110
MS.gene032861.t1 AT3G59210 26.000 450 292 14 20 441 7 443 7.00e-26 110
MS.gene032861.t1 AT3G59210 26.000 450 292 14 20 441 7 443 7.00e-26 110
MS.gene032861.t1 AT3G03030 26.757 441 277 14 20 428 2 428 9.09e-26 110
MS.gene032861.t1 AT4G14103 27.793 367 235 11 20 372 8 358 1.18e-25 108
MS.gene032861.t1 AT4G14103 27.793 367 235 11 20 372 8 358 1.18e-25 108
MS.gene032861.t1 AT2G04230 27.876 452 271 14 19 447 12 431 1.89e-25 108
MS.gene032861.t1 AT1G55660 30.667 225 147 3 17 238 50 268 4.40e-25 106
MS.gene032861.t1 AT3G58900 26.862 443 270 15 20 428 2 424 4.54e-25 107
MS.gene032861.t1 AT3G49030 26.682 446 285 16 19 454 20 433 6.73e-25 107
MS.gene032861.t1 AT1G66310 27.294 436 270 14 10 428 9 414 8.30e-25 106
MS.gene032861.t1 AT4G14103 24.891 458 285 14 20 459 8 424 1.87e-24 105
MS.gene032861.t1 AT4G10400 25.866 433 272 13 20 443 2 394 2.34e-24 105
MS.gene032861.t1 AT4G10400 25.866 433 272 13 20 443 2 394 2.34e-24 105
MS.gene032861.t1 AT4G10400 25.866 433 272 13 20 443 2 394 2.34e-24 105
MS.gene032861.t1 AT5G38590 27.059 425 258 14 20 431 2 387 5.73e-24 103
MS.gene032861.t1 AT1G32375 24.775 444 287 14 20 452 2 409 6.42e-24 103
MS.gene032861.t1 AT1G32375 24.775 444 287 14 20 452 2 409 6.42e-24 103
MS.gene032861.t1 AT2G42730 27.632 456 277 21 17 441 2 435 9.15e-24 103
MS.gene032861.t1 AT5G53840 25.899 417 274 14 19 427 17 406 9.93e-24 103
MS.gene032861.t1 AT5G22730 26.559 433 281 14 19 432 27 441 1.77e-23 103
MS.gene032861.t1 AT5G22730 26.559 433 281 14 19 432 27 441 1.77e-23 103
MS.gene032861.t1 AT1G66320 23.918 439 292 11 19 440 29 442 2.47e-23 102
MS.gene032861.t1 AT5G60610 25.666 413 258 10 20 419 2 378 2.85e-23 101
MS.gene032861.t1 AT5G60610 25.666 413 258 10 20 419 2 378 2.85e-23 101
MS.gene032861.t1 AT3G59240 25.612 449 293 15 20 442 8 441 4.33e-23 102
MS.gene032861.t1 AT4G13965 30.837 227 139 4 20 241 10 223 7.91e-23 100
MS.gene032861.t1 AT3G26922 28.896 308 183 10 19 318 13 292 1.09e-22 98.6
MS.gene032861.t1 AT3G26922 28.896 308 183 10 19 318 13 292 1.09e-22 98.6
MS.gene032861.t1 AT1G58310 27.004 474 280 17 20 440 8 468 1.33e-22 100
MS.gene032861.t1 AT1G52650 25.676 444 267 18 20 428 2 417 1.38e-22 100
MS.gene032861.t1 AT5G38590 31.481 216 135 4 20 233 2 206 1.92e-22 97.4
MS.gene032861.t1 AT3G59230 25.470 479 300 22 20 458 12 473 3.20e-22 99.8
MS.gene032861.t1 AT1G16930 24.385 447 289 16 8 430 5 426 3.80e-22 99.0
MS.gene032861.t1 AT1G16930 24.385 447 289 16 8 430 5 426 3.80e-22 99.0
MS.gene032861.t1 AT1G16930 24.385 447 289 16 8 430 5 426 3.80e-22 99.0
MS.gene032861.t1 AT3G58880 28.883 367 229 14 20 370 3 353 7.61e-22 98.2
MS.gene032861.t1 AT5G56440 28.000 450 255 18 20 441 2 410 9.42e-22 97.8
MS.gene032861.t1 AT2G26860 25.117 426 260 14 20 422 2 391 3.04e-21 95.9
MS.gene032861.t1 AT2G26860 25.117 426 260 14 20 422 2 391 3.04e-21 95.9
MS.gene032861.t1 AT5G22660 24.942 429 284 13 15 427 8 414 3.06e-21 96.3
MS.gene032861.t1 AT1G78760 25.986 431 279 15 11 427 7 411 3.28e-21 96.3
MS.gene032861.t1 AT4G09920 29.224 219 148 4 20 238 2 213 6.89e-21 93.2
MS.gene032861.t1 AT4G09920 29.224 219 148 4 20 238 2 213 6.89e-21 93.2
MS.gene032861.t1 AT4G09920 29.224 219 148 4 20 238 2 213 6.89e-21 93.2
MS.gene032861.t1 AT3G58940 25.503 447 270 19 20 438 2 413 7.83e-21 95.9
MS.gene032861.t1 AT3G58940 25.503 447 270 19 20 438 2 413 7.83e-21 95.9
MS.gene032861.t1 AT3G50710 26.503 449 264 16 20 443 2 409 1.27e-20 94.4
MS.gene032861.t1 AT5G38390 24.944 445 283 14 20 438 2 421 1.49e-20 94.4
MS.gene032861.t1 AT1G55030 26.683 416 262 14 15 422 14 394 1.56e-20 94.0
MS.gene032861.t1 AT4G09920 29.224 219 148 4 20 238 2 213 1.75e-20 92.4
MS.gene032861.t1 AT4G09920 29.224 219 148 4 20 238 2 213 1.75e-20 92.4
MS.gene032861.t1 AT1G55030 26.683 416 262 14 15 422 4 384 2.32e-20 93.6
MS.gene032861.t1 AT3G49030 29.154 319 198 12 19 331 20 316 3.17e-20 92.8
MS.gene032861.t1 AT3G52680 24.379 443 274 11 20 442 21 422 3.34e-20 93.2
MS.gene032861.t1 AT3G59190 25.397 378 249 13 20 377 12 376 5.56e-20 92.8
MS.gene032861.t1 AT4G26350 23.558 416 273 12 20 419 2 388 5.85e-20 92.4
MS.gene032861.t1 AT5G56400 25.219 456 302 13 14 459 28 454 6.50e-20 92.4
MS.gene032861.t1 AT3G59190 25.731 342 224 11 20 341 12 343 1.24e-19 90.9
MS.gene032861.t1 AT5G41840 27.979 386 240 13 20 375 14 391 1.41e-19 91.7
MS.gene032861.t1 AT5G56410 27.848 237 160 2 18 243 1 237 1.65e-19 91.3
MS.gene032861.t1 AT3G58900 27.329 322 204 10 20 320 2 314 1.89e-19 89.4
MS.gene032861.t1 AT3G44810 24.083 436 307 13 25 448 12 435 2.36e-19 90.5
MS.gene032861.t1 AT5G44950 26.914 431 263 17 20 427 4 405 2.75e-19 90.5
MS.gene032861.t1 AT3G03030 27.640 322 203 10 20 318 2 316 2.77e-19 89.0
MS.gene032861.t1 AT1G13780 25.376 465 290 22 20 454 10 447 3.31e-19 90.1
MS.gene032861.t1 AT3G59170 26.786 448 271 19 20 425 7 439 4.95e-19 89.7
MS.gene032861.t1 AT3G58900 27.187 320 203 10 20 318 2 312 4.96e-19 88.2
MS.gene032861.t1 AT3G58900 27.187 320 203 10 20 318 2 312 4.96e-19 88.2
MS.gene032861.t1 AT3G59000 26.549 452 281 19 20 438 2 435 5.21e-19 89.7
MS.gene032861.t1 AT1G69630 25.059 427 276 15 20 427 18 419 6.27e-19 89.4
MS.gene032861.t1 AT3G58930 24.499 449 281 15 20 427 2 433 7.55e-19 89.4
MS.gene032861.t1 AT3G58930 24.499 449 281 15 20 427 2 433 7.55e-19 89.4
MS.gene032861.t1 AT3G58930 24.499 449 281 15 20 427 2 433 7.55e-19 89.4
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 1.13e-18 87.8
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 1.13e-18 87.8
MS.gene032861.t1 AT3G03040 24.060 399 263 12 20 396 2 382 1.24e-18 88.6
MS.gene032861.t1 AT3G59150 25.690 471 299 18 9 445 2 455 1.57e-18 88.2
MS.gene032861.t1 AT3G60040 27.536 414 262 14 20 417 13 404 1.60e-18 89.0
MS.gene032861.t1 AT3G60040 27.536 414 262 14 20 417 230 621 1.60e-18 89.0
MS.gene032861.t1 AT3G52680 28.704 216 143 2 20 233 21 227 1.82e-18 87.0
MS.gene032861.t1 AT3G60040 27.536 414 262 14 20 417 232 623 2.05e-18 88.6
MS.gene032861.t1 AT5G27750 23.142 471 300 14 20 454 5 449 2.64e-18 87.4
MS.gene032861.t1 AT4G13960 25.517 435 278 17 20 428 2 416 2.65e-18 87.4
MS.gene032861.t1 AT4G13960 25.517 435 278 17 20 428 2 416 2.65e-18 87.4
MS.gene032861.t1 AT3G60040 27.536 414 262 14 20 417 232 623 2.75e-18 88.6
MS.gene032861.t1 AT3G60040 27.536 414 262 14 20 417 233 624 2.75e-18 88.6
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 2.95e-18 87.0
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 2.95e-18 87.0
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 2.95e-18 87.0
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 2.95e-18 87.0
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 21 360 3.36e-18 87.0
MS.gene032861.t1 AT3G49040 29.279 222 134 6 19 232 16 222 3.51e-18 85.5
MS.gene032861.t1 AT1G05080 24.242 429 287 8 12 427 5 408 4.15e-18 86.7
MS.gene032861.t1 AT5G53635 25.952 420 281 14 21 427 1 403 4.45e-18 86.7
MS.gene032861.t1 AT3G58960 27.822 381 235 18 20 379 2 363 4.84e-18 86.7
MS.gene032861.t1 AT3G49020 25.546 458 279 15 17 454 19 434 6.23e-18 86.3
MS.gene032861.t1 AT4G00160 24.717 441 277 11 20 442 16 419 7.91e-18 85.9
MS.gene032861.t1 AT5G56420 24.816 407 268 13 20 419 6 381 8.39e-18 85.9
MS.gene032861.t1 AT5G56420 24.816 407 268 13 20 419 6 381 8.39e-18 85.9
MS.gene032861.t1 AT5G56420 24.816 407 268 13 20 419 6 381 8.39e-18 85.9
MS.gene032861.t1 AT5G62970 26.824 425 255 14 29 422 12 411 8.89e-18 85.9
MS.gene032861.t1 AT1G06630 27.978 361 227 13 20 368 12 351 8.94e-18 85.9
MS.gene032861.t1 AT5G22670 25.290 431 278 16 20 431 11 416 9.02e-18 85.9
MS.gene032861.t1 AT5G44490 23.666 431 290 11 19 431 16 425 1.33e-17 85.5
MS.gene032861.t1 AT5G50270 25.359 418 277 10 20 427 2 394 1.80e-17 84.7
MS.gene032861.t1 AT5G44490 23.666 431 290 11 19 431 16 425 1.89e-17 85.1
MS.gene032861.t1 AT5G22720 24.416 471 275 17 19 448 22 452 2.60e-17 84.7
MS.gene032861.t1 AT5G44960 24.178 426 262 15 20 428 5 386 4.93e-17 83.2
MS.gene032861.t1 AT5G22660 25.392 319 215 7 15 323 8 313 5.68e-17 82.0
MS.gene032861.t1 AT5G44980 24.362 431 278 18 20 430 4 406 6.63e-17 83.2
MS.gene032861.t1 AT5G44980 24.362 431 278 18 20 430 4 406 6.63e-17 83.2
MS.gene032861.t1 AT4G15060 29.767 215 143 4 20 232 26 234 7.79e-17 82.8
MS.gene032861.t1 AT4G13985 25.513 439 291 18 20 440 19 439 8.03e-17 83.2
MS.gene032861.t1 AT3G59250 25.821 457 265 18 20 454 7 411 8.33e-17 82.8
MS.gene032861.t1 AT4G26340 23.697 422 270 10 20 426 2 386 8.36e-17 82.8
MS.gene032861.t1 AT4G15060 29.767 215 143 4 20 232 172 380 9.68e-17 83.2
MS.gene032861.t1 AT3G26930 23.898 431 269 13 19 440 20 400 1.00e-16 82.8
MS.gene032861.t1 AT3G62440 26.984 378 232 16 20 370 2 362 1.45e-16 82.0
MS.gene032861.t1 AT3G49480 23.362 458 290 16 13 443 5 428 1.93e-16 81.6
MS.gene032861.t1 AT2G42720 27.394 376 221 16 20 371 2 349 1.95e-16 81.6
MS.gene032861.t1 AT3G59160 23.160 462 284 16 20 440 13 444 1.98e-16 81.6
MS.gene032861.t1 AT5G56690 25.000 416 266 15 22 419 4 391 2.13e-16 81.3
MS.gene032861.t1 AT1G51370 24.074 432 262 16 19 428 18 405 3.24e-16 80.9
MS.gene032861.t1 AT5G22610 25.339 442 280 16 13 425 11 431 4.14e-16 80.9
MS.gene032861.t1 AT5G02930 26.992 389 228 16 20 381 28 387 4.30e-16 80.9
MS.gene032861.t1 AT1G78730 24.235 392 217 14 5 370 9 346 5.17e-16 80.1
MS.gene032861.t1 AT2G26030 22.877 424 288 13 20 425 4 406 2.68e-15 78.2
MS.gene032861.t1 AT2G26030 22.877 424 288 13 20 425 4 406 2.68e-15 78.2
MS.gene032861.t1 AT3G26922 26.460 291 178 10 36 318 1 263 3.35e-15 76.3
MS.gene032861.t1 AT3G26922 26.460 291 178 10 36 318 1 263 3.35e-15 76.3
MS.gene032861.t1 AT5G22730 25.519 337 220 10 19 339 27 348 3.64e-15 77.4
MS.gene032861.t1 AT5G38392 27.103 214 137 8 20 221 2 208 4.88e-15 74.3
MS.gene032861.t1 AT3G44060 21.868 439 319 12 25 458 4 423 5.08e-15 77.4
MS.gene032861.t1 AT5G22610 24.711 433 264 16 13 425 11 401 5.97e-15 77.4
MS.gene032861.t1 AT2G26030 22.482 427 291 13 20 425 4 411 7.03e-15 77.0
MS.gene032861.t1 AT4G27050 24.385 447 271 17 20 427 4 422 7.93e-15 76.6
MS.gene032861.t1 AT4G27050 24.385 447 271 17 20 427 4 422 7.93e-15 76.6
MS.gene032861.t1 AT4G27050 24.385 447 271 17 20 427 4 422 7.93e-15 76.6
MS.gene032861.t1 AT4G27050 24.385 447 271 17 20 427 4 422 7.93e-15 76.6
MS.gene032861.t1 AT4G27050 24.385 447 271 17 20 427 4 422 7.93e-15 76.6
MS.gene032861.t1 AT3G58980 24.891 458 275 21 20 440 2 427 9.04e-15 77.0
MS.gene032861.t1 AT5G41830 25.872 344 223 11 20 341 13 346 9.56e-15 76.6
MS.gene032861.t1 AT1G51370 29.167 216 134 6 19 232 18 216 1.01e-14 75.9
MS.gene032861.t1 AT1G51370 24.873 394 237 14 19 394 18 370 1.27e-14 75.9
MS.gene032861.t1 AT5G56810 28.634 227 140 5 15 231 5 219 1.79e-14 74.3
MS.gene032861.t1 AT4G00320 24.868 378 259 12 20 379 13 383 2.42e-14 75.5
MS.gene032861.t1 AT5G44980 24.272 309 196 13 20 310 4 292 3.14e-14 73.9
MS.gene032861.t1 AT5G44980 24.272 309 196 13 20 310 4 292 3.14e-14 73.9
MS.gene032861.t1 AT5G35995 23.577 492 282 19 20 459 5 454 3.83e-14 74.7
MS.gene032861.t1 AT5G35995 23.577 492 282 19 20 459 5 454 3.83e-14 74.7
MS.gene032861.t1 AT5G56810 28.634 227 140 5 15 231 5 219 3.90e-14 74.7
MS.gene032861.t1 AT1G66640 22.581 403 263 14 51 440 35 401 5.95e-14 73.9
MS.gene032861.t1 AT5G56820 24.362 431 260 17 20 435 15 394 6.21e-14 73.9
MS.gene032861.t1 AT3G10750 29.353 201 120 7 47 241 2 186 8.45e-14 72.4
MS.gene032861.t1 AT1G78840 25.178 421 282 12 20 428 5 404 8.70e-14 73.6
MS.gene032861.t1 AT1G78840 25.178 421 282 12 20 428 5 404 8.70e-14 73.6
MS.gene032861.t1 AT5G18780 25.000 424 282 18 15 425 6 406 1.31e-13 73.2
MS.gene032861.t1 AT5G18780 25.000 424 282 18 15 425 6 406 1.31e-13 73.2
MS.gene032861.t1 AT5G56390 22.120 434 262 14 39 442 22 409 1.72e-13 72.4
MS.gene032861.t1 AT5G22700 23.937 447 276 17 14 428 37 451 1.82e-13 72.8
MS.gene032861.t1 AT5G56380 22.917 432 265 11 20 419 2 397 2.09e-13 72.4
MS.gene032861.t1 AT5G56380 22.917 432 265 11 20 419 2 397 2.09e-13 72.4
MS.gene032861.t1 AT1G06630 27.063 303 193 11 20 312 12 296 2.37e-13 71.2
MS.gene032861.t1 AT3G42770 23.944 426 291 15 25 441 4 405 3.49e-13 72.0
MS.gene032861.t1 AT5G22700 23.884 448 269 18 17 428 3 414 3.52e-13 71.6
MS.gene032861.t1 AT5G22700 23.884 448 269 18 17 428 3 414 3.52e-13 71.6
MS.gene032861.t1 AT5G22700 23.884 448 269 18 17 428 3 414 3.52e-13 71.6
MS.gene032861.t1 AT5G22700 23.884 448 269 18 17 428 3 414 3.52e-13 71.6
MS.gene032861.t1 AT1G22000 28.111 217 141 5 15 230 24 226 1.67e-12 69.7
MS.gene032861.t1 AT5G25850 23.799 458 284 17 22 435 22 458 2.45e-12 69.3
MS.gene032861.t1 AT5G38590 30.496 141 95 1 93 233 34 171 2.58e-12 67.4
MS.gene032861.t1 AT5G41630 24.450 409 272 16 20 399 12 412 2.74e-12 68.9
MS.gene032861.t1 AT1G13780 26.168 321 201 15 20 318 10 316 2.89e-12 68.2
MS.gene032861.t1 AT3G51530 27.413 259 171 8 19 275 29 272 3.39e-12 68.6
MS.gene032861.t1 AT5G44940 26.977 215 132 8 20 223 5 205 4.41e-12 67.8
MS.gene032861.t1 AT5G03100 28.054 221 129 9 20 235 9 204 5.93e-12 67.0
MS.gene032861.t1 AT5G03100 28.054 221 129 9 20 235 9 204 5.93e-12 67.0
MS.gene032861.t1 AT3G26930 22.030 404 256 13 46 440 2 355 8.67e-12 67.0
MS.gene032861.t1 AT1G56610 24.863 366 241 11 24 371 14 363 1.27e-11 67.0
MS.gene032861.t1 AT1G56610 24.863 366 241 11 24 371 77 426 1.41e-11 67.0
MS.gene032861.t1 AT5G18770 21.176 425 296 12 19 425 23 426 3.11e-11 65.9
MS.gene032861.t1 AT1G16940 22.105 380 252 13 20 394 11 351 3.33e-11 65.5
MS.gene032861.t1 AT5G18780 25.205 365 239 16 15 368 6 347 4.41e-11 64.7
MS.gene032861.t1 AT5G18780 25.205 365 239 16 15 368 6 347 4.41e-11 64.7
MS.gene032861.t1 AT3G56780 30.570 193 117 7 22 211 9 187 6.29e-11 64.3
MS.gene032861.t1 AT3G56780 29.167 192 121 5 22 211 9 187 7.54e-11 64.7
MS.gene032861.t1 AT3G56780 30.570 193 117 7 22 211 9 187 7.96e-11 64.3
MS.gene032861.t1 AT5G18770 21.978 364 260 9 19 373 23 371 8.96e-11 63.9

Find 91 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAAAATGCCCCATATTT+AGG 0.152753 5.4:+29711938 MS.gene032861:CDS
TTTCCACTTCTTTGCTAATA+TGG 0.194272 5.4:-29710570 None:intergenic
TGCAATTGTATAAATGTTAT+TGG 0.210852 5.4:+29711053 MS.gene032861:CDS
GATTTAGCATTGATTGATAT+TGG 0.222305 5.4:+29711259 MS.gene032861:CDS
ATCTTGATCTCCCCTAAATA+TGG 0.245051 5.4:-29711950 None:intergenic
GTGTCTCAATTTCCACATTA+AGG 0.261146 5.4:+29711095 MS.gene032861:CDS
GGAAGTTCTTATAGCATCTT+TGG 0.266728 5.4:-29710549 None:intergenic
ACTAGATCTAAGAGGCAATT+TGG 0.273459 5.4:-29710677 None:intergenic
TCTAGGGAGGTCAGGTTAAC+AGG 0.278677 5.4:-29711238 None:intergenic
TAGAAAATGCCCCATATTTA+GGG 0.320323 5.4:+29711939 MS.gene032861:CDS
TATCAATCAATGCTAAATCT+AGG 0.320615 5.4:-29711255 None:intergenic
CTGGAGGAACTTACAATTCC+TGG 0.322585 5.4:+29711679 MS.gene032861:CDS
GCAATTGTATAAATGTTATT+GGG 0.352058 5.4:+29711054 MS.gene032861:CDS
ATTTAGCATTGATTGATATT+GGG 0.352497 5.4:+29711260 MS.gene032861:CDS
ACTTGACGACACAACTTTCC+AGG 0.356353 5.4:-29712045 None:intergenic
TCATTGAATGAATTGTGTTT+AGG 0.358639 5.4:+29710896 MS.gene032861:CDS
TGCACATCTGTTGATGAGAT+TGG 0.366848 5.4:-29710443 None:intergenic
ACGAAATTACTAATTTCTTC+AGG 0.370254 5.4:-29710964 None:intergenic
GATAAATTCTATTGTTGGAT+TGG 0.378567 5.4:-29711215 None:intergenic
CAATACTAATGGACATTATT+CGG 0.383519 5.4:+29711644 MS.gene032861:CDS
ACAGGGATAAATTCTATTGT+TGG 0.383687 5.4:-29711220 None:intergenic
CCAGGCACAAATCTTCCATT+TGG 0.385629 5.4:-29712027 None:intergenic
ATTGTAAGTTCCTCCAGTTT+AGG 0.389614 5.4:-29711673 None:intergenic
TATTCGGAAGACTCCTAAAC+TGG 0.392944 5.4:+29711660 MS.gene032861:CDS
TGGAGAAGATGAATGATGTT+TGG 0.404195 5.4:+29712002 MS.gene032861:CDS
CTATGATAAACGTAACGTAT+TGG 0.409151 5.4:-29711919 None:intergenic
AAAGTTGTGTCGTCAAGTTT+TGG 0.410200 5.4:+29712050 MS.gene032861:CDS
GAGACACTTATCAGCTGATA+TGG 0.415529 5.4:+29711982 MS.gene032861:CDS
TCTTGATCTCCCCTAAATAT+GGG 0.415551 5.4:-29711949 None:intergenic
TGACGTGATTAGTGACTTAC+CGG 0.430619 5.4:+29710490 MS.gene032861:CDS
GCTGAGAAACTACGTGGTAT+TGG 0.432215 5.4:-29710866 None:intergenic
GAACACTAGTGCAATACTAA+TGG 0.432399 5.4:+29711633 MS.gene032861:CDS
ATTGCACACTGAGCAGCATA+TGG 0.444154 5.4:-29711304 None:intergenic
GGTTCAGATATTGTACTTTG+TGG 0.444693 5.4:-29710808 None:intergenic
GTTCTTATAGCATCTTTGGT+AGG 0.445388 5.4:-29710545 None:intergenic
CGATGTCTGTTCTGTGAGTC+CGG 0.445630 5.4:+29711609 MS.gene032861:CDS
GGAGAAGATGAATGATGTTT+GGG 0.450601 5.4:+29712003 MS.gene032861:CDS
GTGTGCAATTAAGCTATTGA+TGG 0.464799 5.4:+29711318 MS.gene032861:CDS
TTACTAATTTCTTCAGGCTA+GGG 0.469003 5.4:-29710958 None:intergenic
GAATGATGTTTGGGACCAAA+TGG 0.476304 5.4:+29712012 MS.gene032861:CDS
GTTATTGGGAGAACATAAAT+CGG 0.476523 5.4:+29711068 MS.gene032861:CDS
ATTACTAATTTCTTCAGGCT+AGG 0.486653 5.4:-29710959 None:intergenic
ACAATATCTGAACCTTTCAC+TGG 0.487811 5.4:+29710817 MS.gene032861:CDS
TTCTTATAGCATCTTTGGTA+GGG 0.492416 5.4:-29710544 None:intergenic
ATGCTAAATCTAGGGAGGTC+AGG 0.495619 5.4:-29711246 None:intergenic
ACAAGGCGCATCAAAATAGA+TGG 0.502825 5.4:-29711125 None:intergenic
ATCAATCAATGCTAAATCTA+GGG 0.505791 5.4:-29711254 None:intergenic
AAAATGAAAGACAGATAAGT+AGG 0.511841 5.4:-29710603 None:intergenic
AGTATTGCACTAGTGTTCTC+CGG 0.515276 5.4:-29711628 None:intergenic
GATGGTCAAATTCCTTAATG+TGG 0.516694 5.4:-29711107 None:intergenic
TGGAGGAACTTACAATTCCT+GGG 0.518012 5.4:+29711680 MS.gene032861:CDS
AATTGCAACTCTTGTAAGAC+AGG 0.524916 5.4:-29711037 None:intergenic
CATTTAGAGCACCCAGTGAA+AGG 0.525762 5.4:-29710829 None:intergenic
CTTCCATATTAGCAAAGAAG+TGG 0.526172 5.4:+29710567 MS.gene032861:CDS
ACAAGTCTACTCGCGTAGAA+AGG 0.537354 5.4:+29710714 MS.gene032861:CDS
GTCTTTCAACTAGATCTAAG+AGG 0.538237 5.4:-29710685 None:intergenic
TCTGTCAAATTGTAAAATGT+AGG 0.542360 5.4:-29711583 None:intergenic
CAAAAGAAAGAATATGAAGA+AGG 0.549964 5.4:-29710520 None:intergenic
CGTCATCCACATTATGTCGT+TGG 0.560823 5.4:-29710472 None:intergenic
CCAAATGGAAGATTTGTGCC+TGG 0.563210 5.4:+29712027 MS.gene032861:CDS
TGATTAGGTACTTAACTACC+TGG 0.565240 5.4:+29711799 MS.gene032861:intron
TACCTTTGCAAATGAGAACT+CGG 0.565737 5.4:+29710991 MS.gene032861:CDS
ATATGAAGAAGGACACCCTC+CGG 0.567826 5.4:-29710509 None:intergenic
AATGTAAAATATACCACCCC+AGG 0.570766 5.4:-29711697 None:intergenic
CTAGGGAAACAAATACCACT+AGG 0.574672 5.4:-29710941 None:intergenic
TAAGATCCAACGACATAATG+TGG 0.578294 5.4:+29710466 MS.gene032861:CDS
GTATCAAATCTTCACCATCC+AGG 0.579157 5.4:-29711817 None:intergenic
TGTGCAATTAAGCTATTGAT+GGG 0.579602 5.4:+29711319 MS.gene032861:CDS
AACCGAGTTCTCATTTGCAA+AGG 0.580091 5.4:-29710993 None:intergenic
TCAAATTGTAAAATGTAGGA+AGG 0.584054 5.4:-29711579 None:intergenic
TCTACTCGCGTAGAAAGGCT+TGG 0.587843 5.4:+29710719 MS.gene032861:CDS
CAAAGAAGTGGAAACACTTG+TGG 0.593332 5.4:+29710579 MS.gene032861:CDS
ACTATATAATAATATTCTTG+AGG 0.598625 5.4:+29711366 MS.gene032861:CDS
CTTGATCTCCCCTAAATATG+GGG 0.607226 5.4:-29711948 None:intergenic
CTAGGGAGGTCAGGTTAACA+GGG 0.613959 5.4:-29711237 None:intergenic
TAAAATGCATAATCGACTGA+GGG 0.616471 5.4:-29711870 None:intergenic
CAATATCTGAACCTTTCACT+GGG 0.618829 5.4:+29710818 MS.gene032861:CDS
TTAAAATGCATAATCGACTG+AGG 0.626275 5.4:-29711871 None:intergenic
CTAGTCTCTTCGTCATACAA+AGG 0.631915 5.4:+29711543 MS.gene032861:intron
GGAACTTACAATTCCTGGGG+TGG 0.638008 5.4:+29711684 MS.gene032861:CDS
TAGGTACTTAACTACCTGGA+TGG 0.641991 5.4:+29711803 MS.gene032861:intron
TCGGAAGACTCCTAAACTGG+AGG 0.657016 5.4:+29711663 MS.gene032861:CDS
AGGGAAGATTTGAAACAGCA+CGG 0.665249 5.4:-29711851 None:intergenic
AATCAATGCTAAATCTAGGG+AGG 0.669085 5.4:-29711251 None:intergenic
AGAAAATGCCCCATATTTAG+GGG 0.671014 5.4:+29711940 MS.gene032861:CDS
CGTGATTAGTGACTTACCGG+AGG 0.685305 5.4:+29710493 MS.gene032861:CDS
TTCACTCTACATATTCCTAG+TGG 0.693154 5.4:+29710926 MS.gene032861:CDS
GTGATTAGTGACTTACCGGA+GGG 0.697483 5.4:+29710494 MS.gene032861:CDS
TCATGATCATAACCTACACA+AGG 0.700028 5.4:-29711142 None:intergenic
GGAGGAACTTACAATTCCTG+GGG 0.703429 5.4:+29711681 MS.gene032861:CDS
TCGAAAGCTGAGAAACTACG+TGG 0.816165 5.4:-29710872 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATATAATAATATTCTTG+AGG + chr5.4:29711366-29711385 MS.gene032861:CDS 15.0%
!!! TTATGCATTTTAAATTTTGA+TGG + chr5.4:29711881-29711900 MS.gene032861:CDS 15.0%
!! GCAATTGTATAAATGTTATT+GGG + chr5.4:29711054-29711073 MS.gene032861:CDS 20.0%
!! GGATAACAATGATATTATTT+CGG + chr5.4:29711752-29711771 MS.gene032861:intron 20.0%
!! TGCAATTGTATAAATGTTAT+TGG + chr5.4:29711053-29711072 MS.gene032861:CDS 20.0%
!!! ATTTAGCATTGATTGATATT+GGG + chr5.4:29711260-29711279 MS.gene032861:CDS 20.0%
! AAAATGAAAGACAGATAAGT+AGG - chr5.4:29710606-29710625 None:intergenic 25.0%
! ACGAAATTACTAATTTCTTC+AGG - chr5.4:29710967-29710986 None:intergenic 25.0%
! ATCAATCAATGCTAAATCTA+GGG - chr5.4:29711257-29711276 None:intergenic 25.0%
! CAAAAGAAAGAATATGAAGA+AGG - chr5.4:29710523-29710542 None:intergenic 25.0%
! GATAAATTCTATTGTTGGAT+TGG - chr5.4:29711218-29711237 None:intergenic 25.0%
! TATCAATCAATGCTAAATCT+AGG - chr5.4:29711258-29711277 None:intergenic 25.0%
! TCAAATTGTAAAATGTAGGA+AGG - chr5.4:29711582-29711601 None:intergenic 25.0%
! TCATTGAATGAATTGTGTTT+AGG + chr5.4:29710896-29710915 MS.gene032861:CDS 25.0%
! TCTGTCAAATTGTAAAATGT+AGG - chr5.4:29711586-29711605 None:intergenic 25.0%
! TTGTTTAGTGATTCTTGATT+AGG + chr5.4:29711784-29711803 MS.gene032861:intron 25.0%
!! CAATACTAATGGACATTATT+CGG + chr5.4:29711644-29711663 MS.gene032861:CDS 25.0%
!!! GATTTAGCATTGATTGATAT+TGG + chr5.4:29711259-29711278 MS.gene032861:CDS 25.0%
!!! TTGTTCTGATTTTGCTTTTT+TGG - chr5.4:29710653-29710672 None:intergenic 25.0%
ACAGGGATAAATTCTATTGT+TGG - chr5.4:29711223-29711242 None:intergenic 30.0%
ATAGAAAATGCCCCATATTT+AGG + chr5.4:29711938-29711957 MS.gene032861:CDS 30.0%
ATTACTAATTTCTTCAGGCT+AGG - chr5.4:29710962-29710981 None:intergenic 30.0%
CTAAAGACAACATTCTCATT+AGG - chr5.4:29711455-29711474 None:intergenic 30.0%
CTATGATAAACGTAACGTAT+TGG - chr5.4:29711922-29711941 None:intergenic 30.0%
CTTGAAACATGGAAAATACA+AGG - chr5.4:29711733-29711752 None:intergenic 30.0%
GTTATTGGGAGAACATAAAT+CGG + chr5.4:29711068-29711087 MS.gene032861:CDS 30.0%
TAAAATGCATAATCGACTGA+GGG - chr5.4:29711873-29711892 None:intergenic 30.0%
TAGAAAATGCCCCATATTTA+GGG + chr5.4:29711939-29711958 MS.gene032861:CDS 30.0%
TCATTGTTATCCTTGAAACA+TGG - chr5.4:29711744-29711763 None:intergenic 30.0%
TGTGCAATTAAGCTATTGAT+GGG + chr5.4:29711319-29711338 MS.gene032861:CDS 30.0%
TTAAAATGCATAATCGACTG+AGG - chr5.4:29711874-29711893 None:intergenic 30.0%
TTACTAATTTCTTCAGGCTA+GGG - chr5.4:29710961-29710980 None:intergenic 30.0%
TTCTTATAGCATCTTTGGTA+GGG - chr5.4:29710547-29710566 None:intergenic 30.0%
TTTCCACTTCTTTGCTAATA+TGG - chr5.4:29710573-29710592 None:intergenic 30.0%
! CTTGTATTTTCCATGTTTCA+AGG + chr5.4:29711731-29711750 MS.gene032861:intron 30.0%
AATCAATGCTAAATCTAGGG+AGG - chr5.4:29711254-29711273 None:intergenic 35.0%
AATGTAAAATATACCACCCC+AGG - chr5.4:29711700-29711719 None:intergenic 35.0%
AATTGCAACTCTTGTAAGAC+AGG - chr5.4:29711040-29711059 None:intergenic 35.0%
ACAATATCTGAACCTTTCAC+TGG + chr5.4:29710817-29710836 MS.gene032861:CDS 35.0%
ACTAGATCTAAGAGGCAATT+TGG - chr5.4:29710680-29710699 None:intergenic 35.0%
AGAAAATGCCCCATATTTAG+GGG + chr5.4:29711940-29711959 MS.gene032861:CDS 35.0%
ATCTTGATCTCCCCTAAATA+TGG - chr5.4:29711953-29711972 None:intergenic 35.0%
ATTGTAAGTTCCTCCAGTTT+AGG - chr5.4:29711676-29711695 None:intergenic 35.0%
CAATATCTGAACCTTTCACT+GGG + chr5.4:29710818-29710837 MS.gene032861:CDS 35.0%
CTTCCATATTAGCAAAGAAG+TGG + chr5.4:29710567-29710586 MS.gene032861:CDS 35.0%
GAACACTAGTGCAATACTAA+TGG + chr5.4:29711633-29711652 MS.gene032861:CDS 35.0%
GATGGTCAAATTCCTTAATG+TGG - chr5.4:29711110-29711129 None:intergenic 35.0%
GGAAGTTCTTATAGCATCTT+TGG - chr5.4:29710552-29710571 None:intergenic 35.0%
GGAGAAGATGAATGATGTTT+GGG + chr5.4:29712003-29712022 MS.gene032861:CDS 35.0%
GGTTCAGATATTGTACTTTG+TGG - chr5.4:29710811-29710830 None:intergenic 35.0%
GTCTTTCAACTAGATCTAAG+AGG - chr5.4:29710688-29710707 None:intergenic 35.0%
GTGTCTCAATTTCCACATTA+AGG + chr5.4:29711095-29711114 MS.gene032861:CDS 35.0%
GTGTGCAATTAAGCTATTGA+TGG + chr5.4:29711318-29711337 MS.gene032861:CDS 35.0%
GTTCTTATAGCATCTTTGGT+AGG - chr5.4:29710548-29710567 None:intergenic 35.0%
TAAGATCCAACGACATAATG+TGG + chr5.4:29710466-29710485 MS.gene032861:CDS 35.0%
TACCTTTGCAAATGAGAACT+CGG + chr5.4:29710991-29711010 MS.gene032861:CDS 35.0%
TATGACGAAGAGACTAGTAA+TGG - chr5.4:29711540-29711559 None:intergenic 35.0%
TCATGATCATAACCTACACA+AGG - chr5.4:29711145-29711164 None:intergenic 35.0%
TCTTGATCTCCCCTAAATAT+GGG - chr5.4:29711952-29711971 None:intergenic 35.0%
TGATTAGGTACTTAACTACC+TGG + chr5.4:29711799-29711818 MS.gene032861:intron 35.0%
TGGAGAAGATGAATGATGTT+TGG + chr5.4:29712002-29712021 MS.gene032861:CDS 35.0%
TTCACTCTACATATTCCTAG+TGG + chr5.4:29710926-29710945 MS.gene032861:CDS 35.0%
! AAAGTTGTGTCGTCAAGTTT+TGG + chr5.4:29712050-29712069 MS.gene032861:CDS 35.0%
AACCGAGTTCTCATTTGCAA+AGG - chr5.4:29710996-29711015 None:intergenic 40.0%
ACAAGGCGCATCAAAATAGA+TGG - chr5.4:29711128-29711147 None:intergenic 40.0%
AGTATTGCACTAGTGTTCTC+CGG - chr5.4:29711631-29711650 None:intergenic 40.0%
CAAAGAAGTGGAAACACTTG+TGG + chr5.4:29710579-29710598 MS.gene032861:CDS 40.0%
CTAGGGAAACAAATACCACT+AGG - chr5.4:29710944-29710963 None:intergenic 40.0%
CTAGTCTCTTCGTCATACAA+AGG + chr5.4:29711543-29711562 MS.gene032861:intron 40.0%
CTTGATCTCCCCTAAATATG+GGG - chr5.4:29711951-29711970 None:intergenic 40.0%
GAGACACTTATCAGCTGATA+TGG + chr5.4:29711982-29712001 MS.gene032861:CDS 40.0%
GTATCAAATCTTCACCATCC+AGG - chr5.4:29711820-29711839 None:intergenic 40.0%
TAGGTACTTAACTACCTGGA+TGG + chr5.4:29711803-29711822 MS.gene032861:intron 40.0%
TATTCGGAAGACTCCTAAAC+TGG + chr5.4:29711660-29711679 MS.gene032861:CDS 40.0%
TGACGTGATTAGTGACTTAC+CGG + chr5.4:29710490-29710509 MS.gene032861:CDS 40.0%
TGGAGGAACTTACAATTCCT+GGG + chr5.4:29711680-29711699 MS.gene032861:CDS 40.0%
! AGGGAAGATTTGAAACAGCA+CGG - chr5.4:29711854-29711873 None:intergenic 40.0%
! ATTGGGCATGACTTTTCACA+TGG + chr5.4:29711277-29711296 MS.gene032861:CDS 40.0%
! GAATGATGTTTGGGACCAAA+TGG + chr5.4:29712012-29712031 MS.gene032861:CDS 40.0%
! TGCACATCTGTTGATGAGAT+TGG - chr5.4:29710446-29710465 None:intergenic 40.0%
!!! TATTTTGATGCGCCTTGTGT+AGG + chr5.4:29711130-29711149 MS.gene032861:CDS 40.0%
!!! TGCTTTTTTGGCTCATATCG+AGG - chr5.4:29710641-29710660 None:intergenic 40.0%
ACAAGTCTACTCGCGTAGAA+AGG + chr5.4:29710714-29710733 MS.gene032861:CDS 45.0%
ACTTGACGACACAACTTTCC+AGG - chr5.4:29712048-29712067 None:intergenic 45.0%
ATATGAAGAAGGACACCCTC+CGG - chr5.4:29710512-29710531 None:intergenic 45.0%
ATGCTAAATCTAGGGAGGTC+AGG - chr5.4:29711249-29711268 None:intergenic 45.0%
ATTGCACACTGAGCAGCATA+TGG - chr5.4:29711307-29711326 None:intergenic 45.0%
CCAAATGGAAGATTTGTGCC+TGG + chr5.4:29712027-29712046 MS.gene032861:CDS 45.0%
CCAGGCACAAATCTTCCATT+TGG - chr5.4:29712030-29712049 None:intergenic 45.0%
CGTCATCCACATTATGTCGT+TGG - chr5.4:29710475-29710494 None:intergenic 45.0%
CTGGAGGAACTTACAATTCC+TGG + chr5.4:29711679-29711698 MS.gene032861:CDS 45.0%
GCTGAGAAACTACGTGGTAT+TGG - chr5.4:29710869-29710888 None:intergenic 45.0%
GGAGGAACTTACAATTCCTG+GGG + chr5.4:29711681-29711700 MS.gene032861:CDS 45.0%
GTGATTAGTGACTTACCGGA+GGG + chr5.4:29710494-29710513 MS.gene032861:CDS 45.0%
TCGAAAGCTGAGAAACTACG+TGG - chr5.4:29710875-29710894 None:intergenic 45.0%
! CATTTAGAGCACCCAGTGAA+AGG - chr5.4:29710832-29710851 None:intergenic 45.0%
! CGGTTCAGCAACTTTTCTCT+GGG + chr5.4:29711011-29711030 MS.gene032861:CDS 45.0%
! TCGGTTCAGCAACTTTTCTC+TGG + chr5.4:29711010-29711029 MS.gene032861:CDS 45.0%
CGATGTCTGTTCTGTGAGTC+CGG + chr5.4:29711609-29711628 MS.gene032861:CDS 50.0%
CGTGATTAGTGACTTACCGG+AGG + chr5.4:29710493-29710512 MS.gene032861:CDS 50.0%
CTAGGGAGGTCAGGTTAACA+GGG - chr5.4:29711240-29711259 None:intergenic 50.0%
GGAACTTACAATTCCTGGGG+TGG + chr5.4:29711684-29711703 MS.gene032861:CDS 50.0%
TCGGAAGACTCCTAAACTGG+AGG + chr5.4:29711663-29711682 MS.gene032861:CDS 50.0%
TCTACTCGCGTAGAAAGGCT+TGG + chr5.4:29710719-29710738 MS.gene032861:CDS 50.0%
TCTAGGGAGGTCAGGTTAAC+AGG - chr5.4:29711241-29711260 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 29710434 29712075 29710434 ID=MS.gene032861
chr5.4 mRNA 29710434 29712075 29710434 ID=MS.gene032861.t1;Parent=MS.gene032861
chr5.4 exon 29710434 29711387 29710434 ID=MS.gene032861.t1.exon1;Parent=MS.gene032861.t1
chr5.4 CDS 29710434 29711387 29710434 ID=cds.MS.gene032861.t1;Parent=MS.gene032861.t1
chr5.4 exon 29711547 29711705 29711547 ID=MS.gene032861.t1.exon2;Parent=MS.gene032861.t1
chr5.4 CDS 29711547 29711705 29711547 ID=cds.MS.gene032861.t1;Parent=MS.gene032861.t1
chr5.4 exon 29711806 29712075 29711806 ID=MS.gene032861.t1.exon3;Parent=MS.gene032861.t1
chr5.4 CDS 29711806 29712075 29711806 ID=cds.MS.gene032861.t1;Parent=MS.gene032861.t1
Gene Sequence

>MS.gene032861

ATGGCTGTTCCAATCTCATCAACAGATGTGCATAAGATCCAACGACATAATGTGGATGACGTGATTAGTGACTTACCGGAGGGTGTCCTTCTTCATATTCTTTCTTTTGTCCCTACCAAAGATGCTATAAGAACTTCCATATTAGCAAAGAAGTGGAAACACTTGTGGACCTACTTATCTGTCTTTCATTTTGAAATTGTTCATCCTCGATATGAGCCAAAAAAGCAAAATCAGAACAACACACCAAATTGCCTCTTAGATCTAGTTGAAAGACTTATGCACAAGTCTACTCGCGTAGAAAGGCTTGGTGTTCGAATATTTAGCACTAATGTTGATACAGACAAAGTTAGTTCTATAATATCTTCTGCTGCTAACCACAAAGTACAATATCTGAACCTTTCACTGGGTGCTCTAAATGATAAGTTTGTGTTACCAATACCACGTAGTTTCTCAGCTTTCGAGTCATTGAATGAATTGTGTTTAGGACTTCAGTTCACTCTACATATTCCTAGTGGTATTTGTTTCCCTAGCCTGAAGAAATTAGTAATTTCGTATGTTACCTTTGCAAATGAGAACTCGGTTCAGCAACTTTTCTCTGGGTGTCCTGTCTTACAAGAGTTGCAATTGTATAAATGTTATTGGGAGAACATAAATCGGATAAGTGTCTCAATTTCCACATTAAGGAATTTGACCATCTATTTTGATGCGCCTTGTGTAGGTTATGATCATGATATGACACTCACGATTGATGCTGTGAATCTTTTATCTTTATCTTGCACATCCAATCCAACAATAGAATTTATCCCTGTTAACCTGACCTCCCTAGATTTAGCATTGATTGATATTGGGCATGACTTTTCACATGGCGAACCATATGCTGCTCAGTGTGCAATTAAGCTATTGATGGGACTTAGTAGTGTCAAGTCTCTCAAACTATATAATAATATTCTTGAGGTATGTTTGACTCTTTTCTCATCATCTTCAATTATTTTTTTTAAAAATAGTTTATATGTTAATGCCTAATGAGAATGTTGTCTTTAGTTATGTGTTTCTTATAATTGTTGCACATTTTCTGTATCACAATACTGAATGTAGTTTTCTTTCCATTACTAGTCTCTTCGTCATACAAAGGATACTCTGCATCTCCTTCCTACATTTTACAATTTGACAGATCTCGATGTCTGTTCTGTGAGTCCGGAGAACACTAGTGCAATACTAATGGACATTATTCGGAAGACTCCTAAACTGGAGGAACTTACAATTCCTGGGGTGGTATATTTTACATTCTGCACTAGTCCTTGTATTTTCCATGTTTCAAGGATAACAATGATATTATTTCGGTAAATTGACTTGTTTAGTGATTCTTGATTAGGTACTTAACTACCTGGATGGTGAAGATTTGATACTGAACTCAGTGCCGTGCTGTTTCAAATCTTCCCTCAGTCGATTATGCATTTTAAATTTTGATGGAACTGAATATGAAATCCAATACGTTACGTTTATCATAGAAAATGCCCCATATTTAGGGGAGATCAAGATACACTGTTCGAGACACTTATCAGCTGATATGGAGAAGATGAATGATGTTTGGGACCAAATGGAAGATTTGTGCCTGGAAAGTTGTGTCGTCAAGTTTTGGTAA

Protein sequence

>MS.gene032861.t1

MAVPISSTDVHKIQRHNVDDVISDLPEGVLLHILSFVPTKDAIRTSILAKKWKHLWTYLSVFHFEIVHPRYEPKKQNQNNTPNCLLDLVERLMHKSTRVERLGVRIFSTNVDTDKVSSIISSAANHKVQYLNLSLGALNDKFVLPIPRSFSAFESLNELCLGLQFTLHIPSGICFPSLKKLVISYVTFANENSVQQLFSGCPVLQELQLYKCYWENINRISVSISTLRNLTIYFDAPCVGYDHDMTLTIDAVNLLSLSCTSNPTIEFIPVNLTSLDLALIDIGHDFSHGEPYAAQCAIKLLMGLSSVKSLKLYNNILESLRHTKDTLHLLPTFYNLTDLDVCSVSPENTSAILMDIIRKTPKLEELTIPGVVLNYLDGEDLILNSVPCCFKSSLSRLCILNFDGTEYEIQYVTFIIENAPYLGEIKIHCSRHLSADMEKMNDVWDQMEDLCLESCVVKFW