Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006727.t1 | XP_003599874.2 | 69.1 | 376 | 105 | 3 | 141 | 505 | 90 | 465 | 1.50E-137 | 500.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006727.t1 | Q9C8Y8 | 30.0 | 290 | 178 | 9 | 206 | 479 | 151 | 431 | 1.0e-17 | 94.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006727.t1 | G7IXZ7 | 69.1 | 376 | 105 | 3 | 141 | 505 | 90 | 465 | 1.1e-137 | 500.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006727.t1 | MTR_4g080787 | 72.040 | 397 | 104 | 3 | 141 | 531 | 96 | 491 | 0.0 | 539 |
MS.gene006727.t1 | MTR_4g080787 | 49.805 | 257 | 122 | 2 | 721 | 977 | 214 | 463 | 2.94e-56 | 203 |
MS.gene006727.t1 | MTR_3g048290 | 67.959 | 387 | 113 | 3 | 141 | 516 | 90 | 476 | 8.98e-169 | 502 |
MS.gene006727.t1 | MTR_3g048290 | 47.266 | 256 | 119 | 5 | 730 | 977 | 217 | 464 | 1.75e-42 | 162 |
MS.gene006727.t1 | MTR_4g080773 | 66.584 | 401 | 126 | 3 | 141 | 533 | 96 | 496 | 6.70e-153 | 461 |
MS.gene006727.t1 | MTR_4g080773 | 48.594 | 249 | 122 | 3 | 730 | 977 | 223 | 466 | 1.38e-52 | 192 |
MS.gene006727.t1 | MTR_4g080773 | 66.667 | 399 | 125 | 3 | 141 | 531 | 96 | 494 | 7.35e-153 | 462 |
MS.gene006727.t1 | MTR_4g080773 | 48.594 | 249 | 122 | 3 | 730 | 977 | 223 | 466 | 1.04e-52 | 193 |
MS.gene006727.t1 | MTR_4g080807 | 58.146 | 356 | 108 | 3 | 147 | 495 | 1 | 322 | 2.54e-122 | 379 |
MS.gene006727.t1 | MTR_4g080807 | 46.694 | 242 | 121 | 3 | 730 | 969 | 88 | 323 | 2.10e-45 | 169 |
MS.gene006727.t1 | MTR_5g039950 | 46.995 | 366 | 167 | 6 | 145 | 504 | 75 | 419 | 4.84e-84 | 278 |
MS.gene006727.t1 | MTR_5g039950 | 42.995 | 207 | 115 | 2 | 761 | 967 | 206 | 409 | 1.79e-34 | 137 |
MS.gene006727.t1 | MTR_4g080590 | 46.335 | 382 | 193 | 5 | 135 | 508 | 78 | 455 | 1.63e-82 | 275 |
MS.gene006727.t1 | MTR_4g080590 | 44.856 | 243 | 126 | 4 | 734 | 975 | 214 | 449 | 2.30e-44 | 167 |
MS.gene006727.t1 | MTR_4g130200 | 44.475 | 362 | 172 | 4 | 146 | 504 | 56 | 391 | 4.99e-76 | 255 |
MS.gene006727.t1 | MTR_4g130200 | 48.544 | 206 | 100 | 3 | 773 | 977 | 191 | 391 | 1.41e-42 | 160 |
MS.gene006727.t1 | MTR_7g023310 | 44.697 | 396 | 195 | 8 | 127 | 504 | 67 | 456 | 1.14e-72 | 248 |
MS.gene006727.t1 | MTR_7g023310 | 43.083 | 253 | 131 | 5 | 730 | 978 | 214 | 457 | 1.04e-33 | 136 |
MS.gene006727.t1 | MTR_7g039630 | 46.372 | 317 | 157 | 5 | 115 | 418 | 27 | 343 | 1.05e-71 | 241 |
MS.gene006727.t1 | MTR_7g039630 | 43.293 | 164 | 86 | 4 | 730 | 890 | 183 | 342 | 1.76e-25 | 109 |
MS.gene006727.t1 | MTR_4g080590 | 47.260 | 292 | 142 | 5 | 135 | 418 | 78 | 365 | 3.24e-58 | 205 |
MS.gene006727.t1 | MTR_4g080590 | 43.791 | 153 | 78 | 4 | 733 | 884 | 213 | 358 | 7.10e-20 | 93.2 |
MS.gene006727.t1 | MTR_7g023330 | 45.353 | 269 | 129 | 7 | 248 | 504 | 133 | 395 | 1.51e-53 | 192 |
MS.gene006727.t1 | MTR_7g023330 | 41.137 | 299 | 160 | 7 | 684 | 977 | 108 | 395 | 2.16e-44 | 166 |
MS.gene006727.t1 | MTR_4g081030 | 37.701 | 374 | 165 | 9 | 142 | 504 | 71 | 387 | 5.82e-53 | 190 |
MS.gene006727.t1 | MTR_4g081030 | 40.506 | 158 | 89 | 2 | 730 | 884 | 198 | 353 | 1.83e-15 | 80.1 |
MS.gene006727.t1 | MTR_2g094750 | 44.481 | 308 | 133 | 11 | 142 | 414 | 156 | 460 | 1.52e-50 | 186 |
MS.gene006727.t1 | MTR_2g094750 | 45.238 | 168 | 71 | 6 | 731 | 887 | 303 | 460 | 1.85e-24 | 108 |
MS.gene006727.t1 | MTR_5g039970 | 49.372 | 239 | 111 | 3 | 141 | 369 | 84 | 322 | 3.54e-48 | 175 |
MS.gene006727.t1 | MTR_5g039970 | 46.903 | 113 | 57 | 3 | 730 | 840 | 211 | 322 | 1.41e-14 | 76.6 |
MS.gene006727.t1 | MTR_2g094450 | 38.587 | 184 | 88 | 6 | 252 | 425 | 31 | 199 | 1.89e-23 | 99.8 |
MS.gene006727.t1 | MTR_2g094450 | 40.698 | 172 | 80 | 6 | 731 | 899 | 48 | 200 | 4.41e-21 | 92.8 |
MS.gene006727.t1 | MTR_2g072530 | 26.596 | 376 | 247 | 12 | 146 | 504 | 82 | 445 | 1.18e-18 | 90.5 |
MS.gene006727.t1 | MTR_2g072530 | 32.121 | 165 | 99 | 6 | 798 | 958 | 272 | 427 | 3.69e-11 | 67.0 |
MS.gene006727.t1 | MTR_1g082260 | 33.721 | 172 | 108 | 2 | 111 | 279 | 7 | 175 | 4.61e-18 | 83.6 |
MS.gene006727.t1 | MTR_6g076210 | 63.750 | 80 | 21 | 3 | 611 | 686 | 41 | 116 | 1.66e-17 | 83.6 |
MS.gene006727.t1 | MTR_4g032730 | 27.414 | 321 | 182 | 11 | 187 | 473 | 134 | 437 | 4.40e-14 | 76.3 |
MS.gene006727.t1 | MTR_4g461050 | 61.404 | 57 | 21 | 1 | 8 | 64 | 309 | 364 | 1.53e-13 | 74.3 |
MS.gene006727.t1 | MTR_8g467800 | 27.211 | 294 | 174 | 10 | 215 | 484 | 159 | 436 | 3.34e-13 | 73.6 |
MS.gene006727.t1 | MTR_5g084070 | 27.760 | 317 | 195 | 9 | 170 | 473 | 100 | 395 | 8.52e-13 | 72.0 |
MS.gene006727.t1 | MTR_3g052072 | 30.508 | 118 | 72 | 3 | 16 | 130 | 37 | 147 | 2.31e-12 | 67.8 |
MS.gene006727.t1 | MTR_5g080710 | 24.839 | 310 | 216 | 8 | 170 | 473 | 123 | 421 | 9.21e-12 | 68.9 |
MS.gene006727.t1 | MTR_4g048330 | 35.714 | 126 | 59 | 3 | 22 | 137 | 190 | 303 | 7.19e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006727.t1 | AT5G53840 | 27.879 | 330 | 228 | 8 | 147 | 472 | 83 | 406 | 4.81e-20 | 94.7 |
MS.gene006727.t1 | AT4G22280 | 27.692 | 325 | 202 | 10 | 163 | 475 | 82 | 385 | 1.74e-18 | 89.7 |
MS.gene006727.t1 | AT4G22280 | 29.008 | 262 | 162 | 7 | 163 | 413 | 82 | 330 | 6.93e-18 | 86.7 |
MS.gene006727.t1 | AT1G66290 | 29.897 | 291 | 179 | 9 | 206 | 480 | 151 | 432 | 7.27e-18 | 88.2 |
MS.gene006727.t1 | AT1G56610 | 28.205 | 273 | 172 | 6 | 165 | 416 | 55 | 324 | 4.40e-17 | 85.5 |
MS.gene006727.t1 | AT4G14096 | 25.191 | 393 | 262 | 13 | 137 | 506 | 68 | 451 | 6.18e-17 | 85.5 |
MS.gene006727.t1 | AT4G14096 | 25.191 | 393 | 262 | 13 | 137 | 506 | 68 | 451 | 6.18e-17 | 85.5 |
MS.gene006727.t1 | AT3G59210 | 26.131 | 398 | 255 | 14 | 141 | 506 | 73 | 463 | 6.67e-17 | 85.5 |
MS.gene006727.t1 | AT3G59210 | 26.131 | 398 | 255 | 14 | 141 | 506 | 73 | 463 | 6.67e-17 | 85.5 |
MS.gene006727.t1 | AT3G59210 | 26.131 | 398 | 255 | 14 | 141 | 506 | 73 | 463 | 6.67e-17 | 85.5 |
MS.gene006727.t1 | AT3G59210 | 26.131 | 398 | 255 | 14 | 141 | 506 | 73 | 463 | 6.67e-17 | 85.5 |
MS.gene006727.t1 | AT3G59210 | 26.131 | 398 | 255 | 14 | 141 | 506 | 73 | 463 | 6.67e-17 | 85.5 |
MS.gene006727.t1 | AT1G56610 | 28.205 | 273 | 172 | 6 | 165 | 416 | 94 | 363 | 7.09e-17 | 85.1 |
MS.gene006727.t1 | AT1G56610 | 28.205 | 273 | 172 | 6 | 165 | 416 | 157 | 426 | 2.50e-16 | 84.0 |
MS.gene006727.t1 | AT3G59180 | 27.595 | 395 | 226 | 15 | 163 | 506 | 63 | 448 | 4.57e-16 | 82.8 |
MS.gene006727.t1 | AT1G58310 | 27.374 | 358 | 215 | 11 | 198 | 515 | 146 | 498 | 1.09e-15 | 81.6 |
MS.gene006727.t1 | AT1G66300 | 28.481 | 316 | 197 | 10 | 174 | 473 | 126 | 428 | 3.20e-15 | 80.1 |
MS.gene006727.t1 | AT3G58860 | 24.507 | 355 | 245 | 10 | 164 | 504 | 99 | 444 | 7.57e-15 | 78.6 |
MS.gene006727.t1 | AT4G14103 | 27.574 | 272 | 174 | 9 | 162 | 417 | 94 | 358 | 1.04e-14 | 77.8 |
MS.gene006727.t1 | AT4G14103 | 27.574 | 272 | 174 | 9 | 162 | 417 | 94 | 358 | 1.04e-14 | 77.8 |
MS.gene006727.t1 | AT4G14103 | 24.518 | 363 | 226 | 12 | 162 | 506 | 94 | 426 | 2.24e-14 | 77.0 |
MS.gene006727.t1 | AT1G06630 | 29.839 | 248 | 162 | 7 | 170 | 413 | 112 | 351 | 4.97e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 29.839 | 248 | 162 | 7 | 170 | 413 | 112 | 351 | 4.97e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 28.896 | 308 | 192 | 11 | 170 | 470 | 112 | 399 | 5.50e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 28.896 | 308 | 192 | 11 | 170 | 470 | 112 | 399 | 5.50e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 28.896 | 308 | 192 | 11 | 170 | 470 | 112 | 399 | 5.50e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 28.896 | 308 | 192 | 11 | 170 | 470 | 112 | 399 | 5.50e-14 | 75.5 |
MS.gene006727.t1 | AT3G59240 | 26.496 | 351 | 228 | 13 | 164 | 489 | 98 | 443 | 6.70e-14 | 75.9 |
MS.gene006727.t1 | AT1G06630 | 29.617 | 287 | 176 | 10 | 170 | 450 | 112 | 378 | 6.88e-14 | 75.9 |
MS.gene006727.t1 | AT5G44950 | 27.744 | 328 | 201 | 13 | 168 | 472 | 91 | 405 | 6.97e-14 | 75.5 |
MS.gene006727.t1 | AT1G06630 | 29.603 | 277 | 171 | 9 | 170 | 442 | 121 | 377 | 9.08e-14 | 75.1 |
MS.gene006727.t1 | AT1G78750 | 29.063 | 320 | 201 | 11 | 170 | 472 | 116 | 426 | 2.26e-13 | 73.9 |
MS.gene006727.t1 | AT1G78750 | 29.063 | 320 | 201 | 11 | 170 | 472 | 116 | 426 | 2.26e-13 | 73.9 |
MS.gene006727.t1 | AT5G22660 | 26.706 | 337 | 202 | 13 | 164 | 472 | 95 | 414 | 7.03e-13 | 72.4 |
MS.gene006727.t1 | AT3G59230 | 25.000 | 408 | 255 | 16 | 140 | 506 | 79 | 476 | 1.14e-12 | 72.0 |
MS.gene006727.t1 | AT3G59250 | 26.667 | 360 | 232 | 14 | 162 | 499 | 62 | 411 | 1.29e-12 | 71.6 |
MS.gene006727.t1 | AT1G66320 | 26.950 | 282 | 169 | 10 | 227 | 485 | 175 | 442 | 2.42e-12 | 70.9 |
MS.gene006727.t1 | AT5G22730 | 27.723 | 303 | 178 | 10 | 198 | 473 | 147 | 435 | 1.25e-11 | 68.6 |
MS.gene006727.t1 | AT5G22730 | 27.723 | 303 | 178 | 10 | 198 | 473 | 147 | 435 | 1.25e-11 | 68.6 |
MS.gene006727.t1 | AT5G15620 | 26.513 | 347 | 220 | 14 | 170 | 489 | 86 | 424 | 1.35e-11 | 68.6 |
MS.gene006727.t1 | AT3G60040 | 26.518 | 313 | 200 | 12 | 170 | 472 | 340 | 632 | 1.54e-11 | 68.9 |
MS.gene006727.t1 | AT3G60040 | 26.518 | 313 | 200 | 12 | 170 | 472 | 338 | 630 | 1.68e-11 | 68.9 |
MS.gene006727.t1 | AT3G60040 | 26.518 | 313 | 200 | 12 | 170 | 472 | 341 | 633 | 1.91e-11 | 68.9 |
MS.gene006727.t1 | AT3G60040 | 26.518 | 313 | 200 | 12 | 170 | 472 | 340 | 632 | 2.00e-11 | 68.6 |
MS.gene006727.t1 | AT3G60040 | 26.518 | 313 | 200 | 12 | 170 | 472 | 121 | 413 | 2.16e-11 | 68.2 |
MS.gene006727.t1 | AT1G16930 | 23.889 | 360 | 242 | 10 | 142 | 475 | 73 | 426 | 2.27e-11 | 67.8 |
MS.gene006727.t1 | AT1G16930 | 23.889 | 360 | 242 | 10 | 142 | 475 | 73 | 426 | 2.27e-11 | 67.8 |
MS.gene006727.t1 | AT1G16930 | 23.889 | 360 | 242 | 10 | 142 | 475 | 73 | 426 | 2.27e-11 | 67.8 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCTTGGTGTTATAATATT+TGG | 0.118070 | 4.1:+25962079 | MS.gene006727:CDS |
GTTGATTCCAAGAAGTTTAA+AGG | 0.140284 | 4.1:+25957498 | MS.gene006727:intron |
GTCACCGACATTATCAAAAT+TGG | 0.155826 | 4.1:-25968010 | None:intergenic |
GTTAAGAAGGATAAATTTAA+TGG | 0.216889 | 4.1:-25962548 | None:intergenic |
TCAAATTCTTCTTTGGTTCC+TGG | 0.228872 | 4.1:+25966425 | MS.gene006727:CDS |
ATCTTGATCTCCTCTAAATA+TGG | 0.233669 | 4.1:-25963265 | None:intergenic |
TTCTTCTTTGGTTCCTGGTT+TGG | 0.239802 | 4.1:+25966430 | MS.gene006727:CDS |
TGGAATTCTGTGGTTGTTAT+TGG | 0.242774 | 4.1:+25962392 | MS.gene006727:CDS |
TTGGTGCAGGGTGACATTGC+TGG | 0.245996 | 4.1:+25966296 | MS.gene006727:CDS |
GACACATCTTCATGTTCTTC+CGG | 0.249141 | 4.1:+25969074 | MS.gene006727:CDS |
GCATGAGCAGGTGCCTTCTT+TGG | 0.262681 | 4.1:-25966173 | None:intergenic |
TGGTCCCTCAAATTCTTCTT+TGG | 0.262749 | 4.1:+25966418 | MS.gene006727:CDS |
AGAAAATTCCCCATATTTAG+AGG | 0.279357 | 4.1:+25963255 | MS.gene006727:CDS |
CTGGAAGTTCTTACGATTCC+TGG | 0.281566 | 4.1:+25962994 | MS.gene006727:CDS |
ATGTTGCAATTTCCACATTA+AGG | 0.299381 | 4.1:+25962434 | MS.gene006727:CDS |
GGTAACACAAAGTTATCTTT+TGG | 0.300165 | 4.1:-25962190 | None:intergenic |
CTTCTCAACAGAAGATATTA+AGG | 0.307374 | 4.1:-25962131 | None:intergenic |
ACACATCTTCATGTTCTTCC+GGG | 0.310333 | 4.1:+25969075 | MS.gene006727:CDS |
GGAAGTTCTTACGGCATCTT+TGG | 0.312765 | 4.1:-25968097 | None:intergenic |
AATATCTCGAACAAAATATC+TGG | 0.329408 | 4.1:-25969453 | None:intergenic |
AAAGTAAGGGCTTCTAGTTT+AGG | 0.332765 | 4.1:-25969153 | None:intergenic |
TGAGACTTTAGATGTATTGA+TGG | 0.351813 | 4.1:+25969113 | MS.gene006727:CDS |
TGGTGCAGGGTGACATTGCT+GGG | 0.351978 | 4.1:+25966297 | MS.gene006727:CDS |
TAGTGCTTCATTAGTGTTCT+CGG | 0.355640 | 4.1:-25962944 | None:intergenic |
GAGACGTTTATCAGCTGATA+TGG | 0.362056 | 4.1:+25963297 | MS.gene006727:CDS |
GCACAATCAAATCTATCTTC+TGG | 0.363560 | 4.1:-25968837 | None:intergenic |
ACTTGATGACACAACTTTCC+AGG | 0.368020 | 4.1:-25963360 | None:intergenic |
TCTCCGAAAGACTCCTAAAC+TGG | 0.371203 | 4.1:+25962975 | MS.gene006727:CDS |
CTTCCAGTTTAGGAGTCTTT+CGG | 0.373671 | 4.1:-25962978 | None:intergenic |
GGATGATATCTTGGACCAAT+TGG | 0.376333 | 4.1:+25963327 | MS.gene006727:CDS |
TCATCTCTTAATCAAAGTTC+AGG | 0.377122 | 4.1:+25957804 | MS.gene006727:CDS |
AAAATATGCCACAGTATTAG+AGG | 0.381044 | 4.1:+25969426 | MS.gene006727:CDS |
TGGAAATTGCAACATTAATC+TGG | 0.384297 | 4.1:-25962426 | None:intergenic |
TGGCAATCTGAGGGCCTTGA+TGG | 0.385980 | 4.1:+25969517 | MS.gene006727:CDS |
AGTCCCGTTAATAGCTCAAT+TGG | 0.387444 | 4.1:-25962640 | None:intergenic |
ACAATCAGGGCCAAGATAAA+TGG | 0.387574 | 4.1:-25968664 | None:intergenic |
TCGTCACCATCTTGACAATC+AGG | 0.389446 | 4.1:-25968678 | None:intergenic |
CCCTTGCTATCAACACTAGT+TGG | 0.393128 | 4.1:-25957723 | None:intergenic |
AGAATCAATGTTGTCACAAT+GGG | 0.394703 | 4.1:-25966342 | None:intergenic |
TCATTGAATGAACTGCGTTT+AGG | 0.397210 | 4.1:+25962235 | MS.gene006727:CDS |
AAAGTTGTGTCATCAAGTTT+TGG | 0.397740 | 4.1:+25963365 | MS.gene006727:CDS |
GGCATCTTTGGTAGGGAGTA+AGG | 0.400930 | 4.1:-25968085 | None:intergenic |
TTAACATAAACTCAACCAAT+TGG | 0.400938 | 4.1:-25969405 | None:intergenic |
GTGCCCTGTCTTACAAGAAT+TGG | 0.402005 | 4.1:+25962372 | MS.gene006727:CDS |
GGAATTCTGTGGTTGTTATT+GGG | 0.403858 | 4.1:+25962393 | MS.gene006727:CDS |
TCTTGATCTCCTCTAAATAT+GGG | 0.405909 | 4.1:-25963264 | None:intergenic |
AGAATGTTGACCATTTATCT+TGG | 0.415131 | 4.1:+25968654 | MS.gene006727:CDS |
CCTAGTGGTATTCGTTTCCC+TGG | 0.417775 | 4.1:+25962280 | MS.gene006727:CDS |
AACTGTGCATGCTTCCAATC+AGG | 0.422982 | 4.1:+25957827 | MS.gene006727:CDS |
GAACACTAATGAAGCACTAA+TGG | 0.425341 | 4.1:+25962948 | MS.gene006727:CDS |
TGATTAGGTACTTAACTACT+TGG | 0.425971 | 4.1:+25963114 | MS.gene006727:intron |
CCTTGCTATCAACACTAGTT+GGG | 0.426091 | 4.1:-25957722 | None:intergenic |
GCACCTGCTCATGCTGAGGC+TGG | 0.426594 | 4.1:+25966182 | MS.gene006727:CDS |
GATTGTGCTTATAGTGCAAT+TGG | 0.427303 | 4.1:+25968852 | MS.gene006727:CDS |
ATCTCCAATTGAGCTATTAA+CGG | 0.429819 | 4.1:+25962636 | MS.gene006727:CDS |
GGAGAAGCTGGATGATATCT+TGG | 0.431073 | 4.1:+25963318 | MS.gene006727:CDS |
GCATATAGCAGCTTCAGATC+TGG | 0.436441 | 4.1:+25966379 | MS.gene006727:CDS |
TAAATAATTTGAGAGAAGAT+TGG | 0.436879 | 4.1:-25969348 | None:intergenic |
ACTATCAATTTCTTCAAGCC+AGG | 0.443829 | 4.1:-25962298 | None:intergenic |
CATCAATGGCGCCACGCAAA+TGG | 0.444391 | 4.1:+25956726 | None:intergenic |
TATTAAGGACTTAACTTTGT+CGG | 0.445602 | 4.1:-25962116 | None:intergenic |
CCAGGCATACATCTTCCAAT+TGG | 0.445740 | 4.1:-25963342 | None:intergenic |
TTAGGGATTTGAATATGTAT+TGG | 0.447651 | 4.1:+25969285 | MS.gene006727:intron |
GTGAGAAGCTTTCGGAGGTT+CGG | 0.453542 | 4.1:+25966240 | MS.gene006727:CDS |
GTGATTGCTCTTTCCACAAA+AGG | 0.455386 | 4.1:-25957586 | None:intergenic |
TTGAGAAGCTGTATGATGTA+TGG | 0.457871 | 4.1:+25969488 | MS.gene006727:CDS |
GATGTACCCTAGGAAAAGTA+AGG | 0.458054 | 4.1:-25969167 | None:intergenic |
TCCCTCGGGTGCAGCATGAT+TGG | 0.460742 | 4.1:-25957679 | None:intergenic |
AGTGCTTCATTAGTGTTCTC+GGG | 0.462346 | 4.1:-25962943 | None:intergenic |
AATTCCAATTCTTGTAAGAC+AGG | 0.466930 | 4.1:-25962376 | None:intergenic |
TGCAACATTATTATCTCCCT+CGG | 0.467631 | 4.1:-25957694 | None:intergenic |
TGATGCGATTGTACCGGCTA+TGG | 0.467783 | 4.1:-25967986 | None:intergenic |
TACTGCTCATGTGTAATAGC+TGG | 0.469618 | 4.1:-25957753 | None:intergenic |
ATGCATCAACTAGGGAGATC+AGG | 0.470059 | 4.1:-25962570 | None:intergenic |
TTTCAAGGATCAAATTCTAA+AGG | 0.471623 | 4.1:+25957546 | MS.gene006727:CDS |
AGAGGATTCATCATCGTAGC+TGG | 0.476453 | 4.1:-25964674 | None:intergenic |
TCTCCAATTGAGCTATTAAC+GGG | 0.476475 | 4.1:+25962637 | MS.gene006727:CDS |
ATCAGCTGATATGGAGAAGC+TGG | 0.480704 | 4.1:+25963306 | MS.gene006727:CDS |
TGTCCATTCTTACCTGCAGC+AGG | 0.481543 | 4.1:-25964862 | None:intergenic |
ATCGTAAGAACTTCCAGTTT+AGG | 0.483920 | 4.1:-25962988 | None:intergenic |
TGGAAGTTCTTACGATTCCT+GGG | 0.484173 | 4.1:+25962995 | MS.gene006727:CDS |
TCAATCTTGATTGTCATATG+AGG | 0.485524 | 4.1:-25962484 | None:intergenic |
TAAACAGCGTGAGAAGCTTT+CGG | 0.487338 | 4.1:+25966232 | MS.gene006727:CDS |
TCACCGACATTATCAAAATT+GGG | 0.488438 | 4.1:-25968009 | None:intergenic |
TTTGGTAAATCATCATTTCA+AGG | 0.495905 | 4.1:+25957531 | MS.gene006727:CDS |
CTGGAGAACACAGTTGCTGC+TGG | 0.501681 | 4.1:+25966398 | MS.gene006727:CDS |
AGACATAGAAGTAACCTGAT+TGG | 0.502115 | 4.1:-25957841 | None:intergenic |
TATAAAATGTAGGAAGGAGA+TGG | 0.503290 | 4.1:-25962888 | None:intergenic |
GTGCATCAACTATGAAGATC+GGG | 0.503605 | 4.1:-25968785 | None:intergenic |
TTCTTACGGCATCTTTGGTA+GGG | 0.505091 | 4.1:-25968092 | None:intergenic |
GTTCTTACGGCATCTTTGGT+AGG | 0.505500 | 4.1:-25968093 | None:intergenic |
CGTCGAAGATGAAATCCAAT+TGG | 0.510242 | 4.1:+25969390 | MS.gene006727:CDS |
CAATGTCTTCAACTTTCACT+AGG | 0.512505 | 4.1:+25962163 | MS.gene006727:CDS |
CTAGGGAGATCAGGTTAAGA+AGG | 0.513211 | 4.1:-25962561 | None:intergenic |
CCCAACTAGTGTTGATAGCA+AGG | 0.514002 | 4.1:+25957722 | MS.gene006727:CDS |
TTTAGCATTTCAAATTTCAC+CGG | 0.515029 | 4.1:+25969367 | MS.gene006727:CDS |
TGTGGAATGAAGGAAGGAGA+TGG | 0.515774 | 4.1:-25969047 | None:intergenic |
AAGTTTGTCAGTTGTGAGAG+AGG | 0.516535 | 4.1:-25966504 | None:intergenic |
TACCCAGCCTCAGCATGAGC+AGG | 0.517266 | 4.1:-25966185 | None:intergenic |
AGGTTAATGACTCTTCTTCA+AGG | 0.517920 | 4.1:+25957780 | MS.gene006727:CDS |
TCAAATTATAAAATGTAGGA+AGG | 0.520029 | 4.1:-25962894 | None:intergenic |
TCAGAGAAGCCGAAAAGCCC+CGG | 0.520718 | 4.1:-25969093 | None:intergenic |
CTTGGCCCTGATTGTCAAGA+TGG | 0.522883 | 4.1:+25968672 | MS.gene006727:CDS |
AGTGTCTGGCACACCAAAGA+AGG | 0.524001 | 4.1:+25966160 | MS.gene006727:intron |
CAGGTTACTTCTATGTCTGT+TGG | 0.524176 | 4.1:+25957846 | MS.gene006727:CDS |
CACCTGCTCATGCTGAGGCT+GGG | 0.524585 | 4.1:+25966183 | MS.gene006727:CDS |
TTGGATTTCATCTTCGACGC+CGG | 0.529338 | 4.1:-25969386 | None:intergenic |
TACAGCTTCTCAACATCGAC+AGG | 0.529404 | 4.1:-25969478 | None:intergenic |
ATGTATTGGATGTTGAAGAC+TGG | 0.530710 | 4.1:+25969299 | MS.gene006727:CDS |
TAGAATCAATGTTGTCACAA+TGG | 0.531951 | 4.1:-25966343 | None:intergenic |
TGTGTCAAATTATAAAATGT+AGG | 0.532522 | 4.1:-25962898 | None:intergenic |
AGTTAATATATGCATCAACT+AGG | 0.534518 | 4.1:-25962579 | None:intergenic |
AGTTCTTACGATTCCTGGGG+TGG | 0.537163 | 4.1:+25962999 | MS.gene006727:CDS |
CCAATTGGAAGATGTATGCC+TGG | 0.537278 | 4.1:+25963342 | MS.gene006727:CDS |
CTAGCGTCTTTACCATGCTA+AGG | 0.539247 | 4.1:+25962858 | MS.gene006727:intron |
TTGTATTTGGGCAGGCAGGT+AGG | 0.540016 | 4.1:+25967952 | MS.gene006727:intron |
GCAACATTATTATCTCCCTC+GGG | 0.540890 | 4.1:-25957693 | None:intergenic |
TTTGGGCAGGCAGGTAGGAA+TGG | 0.542879 | 4.1:+25967957 | MS.gene006727:intron |
AGTTGTGAGAGAGGTGTGGT+TGG | 0.543438 | 4.1:-25966495 | None:intergenic |
CTATCAATTTCTTCAAGCCA+GGG | 0.544471 | 4.1:-25962297 | None:intergenic |
TGTGCATCAACTATGAAGAT+CGG | 0.546851 | 4.1:-25968786 | None:intergenic |
CTTCTTCCAACATGTTTCAA+CGG | 0.547279 | 4.1:-25957610 | None:intergenic |
TTTCAGGCTGCGAATTCTGG+GGG | 0.548559 | 4.1:+25964835 | MS.gene006727:intron |
TGGTTGGTAGTGATAGGTTG+AGG | 0.550870 | 4.1:-25966479 | None:intergenic |
TCTAATCACGTACAAAGCCT+TGG | 0.552416 | 4.1:+25962064 | MS.gene006727:CDS |
ATTGGGTGATGCGATTGTAC+CGG | 0.554990 | 4.1:-25967992 | None:intergenic |
ATTGGAGATTGAGCAGCGTA+TGG | 0.556199 | 4.1:-25962622 | None:intergenic |
GATGCGATTGTACCGGCTAT+GGG | 0.556861 | 4.1:-25967985 | None:intergenic |
TGTGTCAAGTTGTGGAATGA+AGG | 0.558767 | 4.1:-25969057 | None:intergenic |
TGTCAGTTGTGAGAGAGGTG+TGG | 0.559238 | 4.1:-25966499 | None:intergenic |
GCCAATCATGCTGCACCCGA+GGG | 0.559898 | 4.1:+25957678 | MS.gene006727:CDS |
TGCCAATCATGCTGCACCCG+AGG | 0.559939 | 4.1:+25957677 | MS.gene006727:CDS |
GATTCTAAACTTCCTTAATG+TGG | 0.559972 | 4.1:-25962446 | None:intergenic |
CACATCTTCATGTTCTTCCG+GGG | 0.561513 | 4.1:+25969076 | MS.gene006727:CDS |
CATGAAGATGTGTCAAGTTG+TGG | 0.564835 | 4.1:-25969065 | None:intergenic |
TCAAGTCTCTCAAACTAACA+AGG | 0.565163 | 4.1:+25968898 | MS.gene006727:CDS |
ATCACACCGTTGAAACATGT+TGG | 0.568725 | 4.1:+25957604 | MS.gene006727:CDS |
AATGTAAAATATACCACCCC+AGG | 0.570766 | 4.1:-25963012 | None:intergenic |
AGAGAAGATTGGAAACAGCT+AGG | 0.572752 | 4.1:-25969337 | None:intergenic |
AGGAACCAAAGAAGAATTTG+AGG | 0.573234 | 4.1:-25966423 | None:intergenic |
TTGAATTGTTTCTGAAGATG+TGG | 0.576626 | 4.1:-25957645 | None:intergenic |
CGAAGTGTGCTATCCAAACC+AGG | 0.578099 | 4.1:-25966443 | None:intergenic |
GAGGTGTGGTTGGTAGTGAT+AGG | 0.578546 | 4.1:-25966485 | None:intergenic |
GTTAATATATGCATCAACTA+GGG | 0.578731 | 4.1:-25962578 | None:intergenic |
TTGGTCATTCACCATCAGAT+AGG | 0.579741 | 4.1:+25957865 | MS.gene006727:CDS |
CTCGTCAGATTCATCATCAG+AGG | 0.584104 | 4.1:-25964692 | None:intergenic |
AATTGTTTCTGAAGATGTGG+TGG | 0.584228 | 4.1:-25957642 | None:intergenic |
ACTTAATGACACAACCATCA+AGG | 0.585658 | 4.1:-25969531 | None:intergenic |
TATCTTTGCTAACAAGAACT+CGG | 0.587578 | 4.1:+25962330 | MS.gene006727:CDS |
CTGGATCTCCTCTAATACTG+TGG | 0.590237 | 4.1:-25969434 | None:intergenic |
AGAAGCTTTCGGAGGTTCGG+AGG | 0.592522 | 4.1:+25966243 | MS.gene006727:CDS |
TTCTGAAGCTCAAAGAAGTG+TGG | 0.592833 | 4.1:+25966577 | MS.gene006727:CDS |
GGAACCAAAGAAGAATTTGA+GGG | 0.593067 | 4.1:-25966422 | None:intergenic |
ATGTACCCTAGGAAAAGTAA+GGG | 0.595904 | 4.1:-25969166 | None:intergenic |
GTTGCGTGGCGCCATTTGCG+TGG | 0.595908 | 4.1:-25956737 | None:intergenic |
TTAGTGTCATGTACAACAGA+AGG | 0.596292 | 4.1:-25966212 | None:intergenic |
ACTAACAAGGGATACTCTCA+AGG | 0.597804 | 4.1:+25968911 | MS.gene006727:CDS |
CTGGTTTGGATAGCACACTT+CGG | 0.599582 | 4.1:+25966444 | MS.gene006727:CDS |
CCAGGGAAACGAATACCACT+AGG | 0.602598 | 4.1:-25962280 | None:intergenic |
CTTGCTATCAACACTAGTTG+GGG | 0.603414 | 4.1:-25957721 | None:intergenic |
ATGGAGGCAGTGGCAATCTG+AGG | 0.603990 | 4.1:+25969507 | MS.gene006727:CDS |
ATTGGATGTTGAAGACTGGA+TGG | 0.607112 | 4.1:+25969303 | MS.gene006727:CDS |
AGAGAAGATTTGAAACAGCA+CGG | 0.609221 | 4.1:-25963166 | None:intergenic |
CGTCACCATCTTGACAATCA+GGG | 0.609477 | 4.1:-25968677 | None:intergenic |
CTCTGATGATGAATCTGACG+AGG | 0.609664 | 4.1:+25964693 | MS.gene006727:CDS |
GGTGCAGGGTGACATTGCTG+GGG | 0.609667 | 4.1:+25966298 | MS.gene006727:CDS |
CTTGATCTCCTCTAAATATG+GGG | 0.611649 | 4.1:-25963263 | None:intergenic |
GAAGGCACCTGCTCATGCTG+AGG | 0.612209 | 4.1:+25966178 | MS.gene006727:CDS |
GAAACATGTTGGAAGAAGCA+TGG | 0.614912 | 4.1:+25957615 | MS.gene006727:CDS |
AATGTCACCCTGCACCAAAG+AGG | 0.615758 | 4.1:-25966291 | None:intergenic |
GGAATGGCTCAACCCATAGC+CGG | 0.618770 | 4.1:+25967973 | MS.gene006727:CDS |
TTACAAGAATTGGAATTCTG+TGG | 0.620052 | 4.1:+25962382 | MS.gene006727:CDS |
TCAAGTTGTGGAATGAAGGA+AGG | 0.622726 | 4.1:-25969053 | None:intergenic |
TTACACATGAGCAGTATGAA+AGG | 0.623637 | 4.1:+25957760 | MS.gene006727:CDS |
TGGAGGCAGTGGCAATCTGA+GGG | 0.624440 | 4.1:+25969508 | MS.gene006727:CDS |
GATGGAGAGTATCCTTAGCA+TGG | 0.626867 | 4.1:-25962870 | None:intergenic |
GTCCATTCTTACCTGCAGCA+GGG | 0.630595 | 4.1:-25964861 | None:intergenic |
GCAGCGTATGGTTCATCATG+TGG | 0.631744 | 4.1:-25962610 | None:intergenic |
GTACCAACGTCTTTGTTGCG+TGG | 0.631925 | 4.1:-25956751 | None:intergenic |
TGTATGATGTATGGAGGCAG+TGG | 0.636076 | 4.1:+25969497 | MS.gene006727:CDS |
TTCAGGCTGCGAATTCTGGG+GGG | 0.637030 | 4.1:+25964836 | MS.gene006727:intron |
CAAGTCTCTCAAACTAACAA+GGG | 0.638613 | 4.1:+25968899 | MS.gene006727:CDS |
CGTGTACCTTGCCTATCTGA+TGG | 0.641302 | 4.1:-25957876 | None:intergenic |
CTAGTGAAAGTTGAAGACAT+TGG | 0.645072 | 4.1:-25962162 | None:intergenic |
TCAAAAGCTGAGAAACTATG+TGG | 0.645344 | 4.1:-25962211 | None:intergenic |
ATTCCAATTCTTGTAAGACA+GGG | 0.645662 | 4.1:-25962375 | None:intergenic |
CCAACTAGTGTTGATAGCAA+GGG | 0.652039 | 4.1:+25957723 | MS.gene006727:CDS |
CTCCAAATATTATAACACCA+AGG | 0.664984 | 4.1:-25962081 | None:intergenic |
GGAAGTTCTTACGATTCCTG+GGG | 0.665994 | 4.1:+25962996 | MS.gene006727:CDS |
CATTCACCATCAGATAGGCA+AGG | 0.666778 | 4.1:+25957870 | MS.gene006727:CDS |
GCGCCACGCAACAAAGACGT+TGG | 0.685551 | 4.1:+25956748 | MS.gene006727:CDS |
ACAGCGTGAGAAGCTTTCGG+AGG | 0.685730 | 4.1:+25966235 | MS.gene006727:CDS |
TTCACTCTACATATTCCTAG+TGG | 0.693154 | 4.1:+25962265 | MS.gene006727:CDS |
GAATCAATGTTGTCACAATG+GGG | 0.699389 | 4.1:-25966341 | None:intergenic |
AGAAGCTGTATGATGTATGG+AGG | 0.703132 | 4.1:+25969491 | MS.gene006727:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 25956731 | 25969561 | 25956731 | ID=MS.gene006727 |
chr4.1 | mRNA | 25956731 | 25969561 | 25956731 | ID=MS.gene006727.t1;Parent=MS.gene006727 |
chr4.1 | exon | 25956731 | 25956769 | 25956731 | ID=MS.gene006727.t1.exon1;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25956731 | 25956769 | 25956731 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25957510 | 25957891 | 25957510 | ID=MS.gene006727.t1.exon2;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25957510 | 25957891 | 25957510 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25962038 | 25962705 | 25962038 | ID=MS.gene006727.t1.exon3;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25962038 | 25962705 | 25962038 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25962862 | 25963020 | 25962862 | ID=MS.gene006727.t1.exon4;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25962862 | 25963020 | 25962862 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25963121 | 25963386 | 25963121 | ID=MS.gene006727.t1.exon5;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25963121 | 25963386 | 25963121 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25964672 | 25964720 | 25964672 | ID=MS.gene006727.t1.exon6;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25964672 | 25964720 | 25964672 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25964841 | 25964871 | 25964841 | ID=MS.gene006727.t1.exon7;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25964841 | 25964871 | 25964841 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25966162 | 25966612 | 25966162 | ID=MS.gene006727.t1.exon8;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25966162 | 25966612 | 25966162 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25967966 | 25968107 | 25967966 | ID=MS.gene006727.t1.exon9;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25967966 | 25968107 | 25967966 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25968618 | 25968932 | 25968618 | ID=MS.gene006727.t1.exon10;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25968618 | 25968932 | 25968618 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25969021 | 25969182 | 25969021 | ID=MS.gene006727.t1.exon11;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25969021 | 25969182 | 25969021 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
chr4.1 | exon | 25969289 | 25969561 | 25969289 | ID=MS.gene006727.t1.exon12;Parent=MS.gene006727.t1 |
chr4.1 | CDS | 25969289 | 25969561 | 25969289 | ID=cds.MS.gene006727.t1;Parent=MS.gene006727.t1 |
Gene Sequence |
Protein sequence |