Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065913.t1 | XP_003607450.1 | 99.4 | 362 | 2 | 0 | 36 | 397 | 103 | 464 | 6.80E-198 | 699.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065913.t1 | Q55480 | 32.6 | 328 | 205 | 6 | 45 | 369 | 4 | 318 | 3.5e-33 | 144.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065913.t1 | G7JSU0 | 99.4 | 362 | 2 | 0 | 36 | 397 | 103 | 464 | 4.9e-198 | 699.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene065913 | 0.804524 | 2.07E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene065913 | 0.830616 | 2.66E-55 | -1.69E-46 |
| MS.gene049389 | MS.gene065913 | 0.847422 | 1.17E-59 | -1.69E-46 |
| MS.gene049491 | MS.gene065913 | 0.82831 | 9.65E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene065913 | 0.821567 | 3.77E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene065913 | 0.818151 | 2.28E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene065913 | 0.844096 | 9.34E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene065913 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene065913 | 0.803132 | 4.03E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene065913 | 0.853202 | 2.79E-61 | -1.69E-46 |
| MS.gene050301 | MS.gene065913 | 0.890338 | 1.08E-73 | -1.69E-46 |
| MS.gene050404 | MS.gene065913 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene050406 | MS.gene065913 | 0.828874 | 7.05E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene065913 | 0.84362 | 1.25E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene065913 | 0.831377 | 1.73E-55 | -1.69E-46 |
| MS.gene050812 | MS.gene065913 | 0.850821 | 1.33E-60 | -1.69E-46 |
| MS.gene05101 | MS.gene065913 | 0.838071 | 3.58E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene065913 | 0.832441 | 9.44E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene065913 | 0.853611 | 2.13E-61 | -1.69E-46 |
| MS.gene051860 | MS.gene065913 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene065913 | 0.813864 | 2.06E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene065913 | 0.863001 | 3.40E-64 | -1.69E-46 |
| MS.gene052178 | MS.gene065913 | 0.842183 | 3.02E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene065913 | 0.911958 | 3.37E-83 | -1.69E-46 |
| MS.gene052253 | MS.gene065913 | 0.829566 | 4.79E-55 | -1.69E-46 |
| MS.gene052290 | MS.gene065913 | 0.817364 | 3.43E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene065913 | 0.872371 | 3.35E-67 | -1.69E-46 |
| MS.gene052322 | MS.gene065913 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene065913 | 0.825604 | 4.28E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene065913 | 0.872669 | 2.66E-67 | -1.69E-46 |
| MS.gene052485 | MS.gene065913 | 0.826502 | 2.62E-54 | -1.69E-46 |
| MS.gene053073 | MS.gene065913 | 0.803373 | 3.60E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene065913 | 0.811651 | 6.29E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene065913 | 0.830162 | 3.43E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene065913 | 0.854599 | 1.11E-61 | -1.69E-46 |
| MS.gene053559 | MS.gene065913 | 0.814224 | 1.72E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene065913 | 0.856205 | 3.77E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene065913 | 0.83266 | 8.33E-56 | -1.69E-46 |
| MS.gene054123 | MS.gene065913 | 0.896126 | 4.97E-76 | -1.69E-46 |
| MS.gene054349 | MS.gene065913 | 0.846893 | 1.63E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene065913 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene05455 | MS.gene065913 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene065913 | 0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene054955 | MS.gene065913 | 0.808753 | 2.65E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene065913 | 0.847197 | 1.35E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene065913 | 0.830348 | 3.09E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene065913 | 0.824493 | 7.84E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene065913 | 0.866787 | 2.21E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene065913 | 0.840013 | 1.12E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene065913 | 0.815741 | 7.91E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene065913 | 0.822472 | 2.33E-53 | -1.69E-46 |
| MS.gene055896 | MS.gene065913 | 0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene05602 | MS.gene065913 | 0.802319 | 5.93E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene065913 | 0.804681 | 1.92E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene065913 | 0.841623 | 4.25E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene065913 | 0.812246 | 4.67E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene065913 | 0.854599 | 1.11E-61 | -1.69E-46 |
| MS.gene056612 | MS.gene065913 | 0.826437 | 2.71E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene065913 | 0.820748 | 5.82E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene065913 | 0.846524 | 2.06E-59 | -1.69E-46 |
| MS.gene056796 | MS.gene065913 | 0.832097 | 1.15E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene065913 | 0.842364 | 2.71E-58 | -1.69E-46 |
| MS.gene057121 | MS.gene065913 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene065913 | 0.808572 | 2.90E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene065913 | 0.82884 | 7.19E-55 | -1.69E-46 |
| MS.gene05733 | MS.gene065913 | 0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene065913 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene065913 | 0.819675 | 1.03E-52 | -1.69E-46 |
| MS.gene057448 | MS.gene065913 | 0.834105 | 3.63E-56 | -1.69E-46 |
| MS.gene057449 | MS.gene065913 | 0.815803 | 7.67E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene065913 | 0.836646 | 8.29E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene065913 | 0.833755 | 4.44E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene065913 | 0.832226 | 1.07E-55 | -1.69E-46 |
| MS.gene058002 | MS.gene065913 | 0.877835 | 4.57E-69 | -1.69E-46 |
| MS.gene058082 | MS.gene065913 | 0.880427 | 5.54E-70 | -1.69E-46 |
| MS.gene05811 | MS.gene065913 | 0.855518 | 5.98E-62 | -1.69E-46 |
| MS.gene058142 | MS.gene065913 | 0.859161 | 5.01E-63 | -1.69E-46 |
| MS.gene058233 | MS.gene065913 | 0.823083 | 1.68E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene065913 | 0.825675 | 4.12E-54 | -1.69E-46 |
| MS.gene058293 | MS.gene065913 | 0.862005 | 6.88E-64 | -1.69E-46 |
| MS.gene058365 | MS.gene065913 | 0.869561 | 2.82E-66 | -1.69E-46 |
| MS.gene058660 | MS.gene065913 | 0.870687 | 1.21E-66 | -1.69E-46 |
| MS.gene058748 | MS.gene065913 | 0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene058749 | MS.gene065913 | 0.805966 | 1.03E-49 | -1.69E-46 |
| MS.gene058787 | MS.gene065913 | 0.821896 | 3.16E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene065913 | 0.825058 | 5.76E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene065913 | 0.84229 | 2.83E-58 | -1.69E-46 |
| MS.gene058949 | MS.gene065913 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene065913 | 0.808599 | 2.86E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene065913 | 0.851398 | 9.11E-61 | -1.69E-46 |
| MS.gene059285 | MS.gene065913 | 0.841525 | 4.51E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene065913 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene059342 | MS.gene065913 | 0.846122 | 2.65E-59 | -1.69E-46 |
| MS.gene059366 | MS.gene065913 | 0.807084 | 6.01E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene065913 | 0.820588 | 6.34E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene065913 | 0.897018 | 2.11E-76 | -1.69E-46 |
| MS.gene05959 | MS.gene065913 | 0.833116 | 6.42E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene065913 | 0.871786 | 5.24E-67 | -1.69E-46 |
| MS.gene059688 | MS.gene065913 | 0.868969 | 4.40E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene065913 | 0.88315 | 5.72E-71 | -1.69E-46 |
| MS.gene059695 | MS.gene065913 | 0.885651 | 6.76E-72 | -1.69E-46 |
| MS.gene059708 | MS.gene065913 | 0.833322 | 5.70E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene065913 | 0.857484 | 1.58E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene065913 | 0.863355 | 2.64E-64 | -1.69E-46 |
| MS.gene059899 | MS.gene065913 | 0.846633 | 1.92E-59 | -1.69E-46 |
| MS.gene060005 | MS.gene065913 | 0.80253 | 5.37E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene065913 | 0.829911 | 3.95E-55 | -1.69E-46 |
| MS.gene060403 | MS.gene065913 | 0.802989 | 4.32E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene065913 | 0.85032 | 1.83E-60 | -1.69E-46 |
| MS.gene060495 | MS.gene065913 | 0.825473 | 4.60E-54 | -1.69E-46 |
| MS.gene060496 | MS.gene065913 | 0.800429 | 1.45E-48 | -1.69E-46 |
| MS.gene06090 | MS.gene065913 | 0.815581 | 8.59E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene065913 | 0.870325 | 1.59E-66 | -1.69E-46 |
| MS.gene061051 | MS.gene065913 | -0.839728 | 1.33E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065913.t1 | MTR_4g078150 | 98.992 | 397 | 3 | 1 | 1 | 397 | 69 | 464 | 0.0 | 796 |
| MS.gene065913.t1 | MTR_4g078150 | 99.413 | 341 | 2 | 0 | 57 | 397 | 11 | 351 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065913.t1 | AT4G27600 | 74.545 | 385 | 97 | 1 | 12 | 396 | 88 | 471 | 0.0 | 597 |
| MS.gene065913.t1 | AT1G19600 | 24.759 | 311 | 214 | 7 | 43 | 345 | 10 | 308 | 1.02e-12 | 69.3 |
Find 88 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGACATTATGATCATTTC+TGG | 0.180649 | 4.1:+27195891 | MS.gene065913:CDS |
| TAATGAGTTCCTGAAGAATT+TGG | 0.187279 | 4.1:+27194265 | MS.gene065913:CDS |
| CCTAAAACATCCCATCTTTC+AGG | 0.215574 | 4.1:-27193339 | None:intergenic |
| ACGAACAATGCTTGCATATC+AGG | 0.287395 | 4.1:+27194843 | MS.gene065913:CDS |
| TTTCTAATCCCAAATTCTTC+AGG | 0.293243 | 4.1:-27194274 | None:intergenic |
| GGCTCTTACATAGGCGTAAA+AGG | 0.296593 | 4.1:+27196911 | MS.gene065913:CDS |
| GTTATTGCTTTAATAGTATC+AGG | 0.310002 | 4.1:-27195797 | None:intergenic |
| AATTTCAGATGCAGTCAAAT+TGG | 0.322488 | 4.1:+27197114 | MS.gene065913:CDS |
| CATCATCTTCTTCTTCATCA+TGG | 0.338973 | 4.1:-27193227 | None:intergenic |
| AATGAGTTCCTGAAGAATTT+GGG | 0.349445 | 4.1:+27194266 | MS.gene065913:CDS |
| TTCTAATACTTTAGTTGCCT+TGG | 0.350723 | 4.1:+27194391 | MS.gene065913:CDS |
| GAAGAATTTGGGATTAGAAA+AGG | 0.371489 | 4.1:+27194277 | MS.gene065913:CDS |
| CCTATCAAGGATGCGACAAC+TGG | 0.393747 | 4.1:+27194787 | MS.gene065913:CDS |
| CCAGTTGTCGCATCCTTGAT+AGG | 0.394333 | 4.1:-27194787 | None:intergenic |
| ATCTATTGGGTGGCTTCTAC+AGG | 0.397421 | 4.1:+27194483 | MS.gene065913:CDS |
| CAGTGTAGCGAGCGATCTAT+TGG | 0.402028 | 4.1:+27194469 | MS.gene065913:CDS |
| AGCAATAACAAAAGCTTGTA+AGG | 0.402404 | 4.1:+27195811 | MS.gene065913:CDS |
| TTAGTTGCCTTGGCAAGGCT+TGG | 0.404584 | 4.1:+27194401 | MS.gene065913:CDS |
| AGCTAGGAGTAACGGTGCTT+TGG | 0.411129 | 4.1:+27195835 | MS.gene065913:CDS |
| AACTTGATACATCCGTTGTT+AGG | 0.411138 | 4.1:+27197155 | MS.gene065913:CDS |
| ATTTCTTTCTGCACCTATCA+AGG | 0.411704 | 4.1:+27194774 | MS.gene065913:CDS |
| AGCCACTGTTGTTGCACAGC+AGG | 0.416821 | 4.1:+27197078 | MS.gene065913:CDS |
| TAATTAAACAGTACCGATAT+CGG | 0.419189 | 4.1:-27197179 | None:intergenic |
| AGCATTGTTCGTTGAGCATC+TGG | 0.423542 | 4.1:-27194832 | None:intergenic |
| TCTTAGAAACTGCACTTGCC+AGG | 0.434122 | 4.1:-27195736 | None:intergenic |
| TCATTCAACAGGGAAATTGT+AGG | 0.437708 | 4.1:+27196749 | MS.gene065913:intron |
| AAGAATTTGGGATTAGAAAA+GGG | 0.447972 | 4.1:+27194278 | MS.gene065913:CDS |
| GTGTCGGATTTAAGAAATAT+AGG | 0.450420 | 4.1:+27197034 | MS.gene065913:CDS |
| CAAAAGCTTGTAAGGAAGCT+AGG | 0.453074 | 4.1:+27195819 | MS.gene065913:CDS |
| ACCAACATACTTGTTGTTGA+AGG | 0.456941 | 4.1:+27195758 | MS.gene065913:CDS |
| ACTAGTAAATCACGAGGAAA+GGG | 0.457493 | 4.1:+27194310 | MS.gene065913:CDS |
| CCAGTAGACACTTGTGGTGC+TGG | 0.459981 | 4.1:+27196968 | MS.gene065913:CDS |
| AAGTTGAAATTCAAAAGATT+CGG | 0.464216 | 4.1:-27197137 | None:intergenic |
| GCTGGTGATGCATATGCATC+TGG | 0.479499 | 4.1:+27196986 | MS.gene065913:CDS |
| TCCGTTGTTAGGTCCGATAT+CGG | 0.481454 | 4.1:+27197166 | MS.gene065913:CDS |
| ATCATAATGTCTCTCGATGC+AGG | 0.484127 | 4.1:-27195882 | None:intergenic |
| TGCAGCTATAAAGCCGCAGC+TGG | 0.485619 | 4.1:+27194359 | MS.gene065913:CDS |
| GTTGCCTTGGCAAGGCTTGG+AGG | 0.487942 | 4.1:+27194404 | MS.gene065913:CDS |
| TGTCAACTTCGACACTTCCC+TGG | 0.491495 | 4.1:+27195718 | MS.gene065913:CDS |
| AAGATGATGAACAACAGATT+AGG | 0.494754 | 4.1:+27193241 | MS.gene065913:CDS |
| GCTATAAATGTGGCAATGGC+TGG | 0.495219 | 4.1:+27194446 | MS.gene065913:CDS |
| AACTAGTAAATCACGAGGAA+AGG | 0.495315 | 4.1:+27194309 | MS.gene065913:CDS |
| TTTAGGGCTTGGACAAGCTA+TGG | 0.496529 | 4.1:+27193356 | MS.gene065913:CDS |
| AACAGAAACAGTGCTCTCCT+TGG | 0.501038 | 4.1:-27196834 | None:intergenic |
| CCAGCACCACAAGTGTCTAC+TGG | 0.504724 | 4.1:-27196968 | None:intergenic |
| AGTGTAGCGAGCGATCTATT+GGG | 0.505752 | 4.1:+27194470 | MS.gene065913:CDS |
| TTTATAGCTGCAACCATCCA+TGG | 0.506445 | 4.1:-27194348 | None:intergenic |
| GCCATTGCCACATTTATAGC+AGG | 0.508000 | 4.1:-27194443 | None:intergenic |
| AAAGAAATTGCACATTTGCT+CGG | 0.523683 | 4.1:-27194759 | None:intergenic |
| GGTCTTCGAGGCTCTTACAT+AGG | 0.529019 | 4.1:+27196902 | MS.gene065913:CDS |
| TATGCATCTGGCATATTGTA+TGG | 0.530322 | 4.1:+27196998 | MS.gene065913:CDS |
| TATAGGTACAATAGCAGCTA+AGG | 0.531215 | 4.1:+27197051 | MS.gene065913:CDS |
| ATACTTTAGTTGCCTTGGCA+AGG | 0.531967 | 4.1:+27194396 | MS.gene065913:CDS |
| TCTGTTACCGATGGTCTTCG+AGG | 0.535408 | 4.1:+27196890 | MS.gene065913:CDS |
| TCCTGCTATAAATGTGGCAA+TGG | 0.541036 | 4.1:+27194442 | MS.gene065913:CDS |
| GGCTGGTGGTGAAGATGAAG+TGG | 0.547961 | 4.1:+27193269 | MS.gene065913:CDS |
| AGAGCACTGTTTCTGTTACA+AGG | 0.552484 | 4.1:+27196840 | MS.gene065913:CDS |
| GATGATGATGATGAAGAAGA+AGG | 0.556577 | 4.1:+27193294 | MS.gene065913:CDS |
| CAACAGATTAGGACTAGGGC+TGG | 0.563070 | 4.1:+27193252 | MS.gene065913:CDS |
| AGCTATAAAGCCGCAGCTGG+TGG | 0.566528 | 4.1:+27194362 | MS.gene065913:CDS |
| ATGATGATGATGAAGAAGAA+GGG | 0.567330 | 4.1:+27193295 | MS.gene065913:CDS |
| CTTAGAAACTGCACTTGCCA+GGG | 0.568940 | 4.1:-27195735 | None:intergenic |
| CAAGTGTCTACTGGAACACA+TGG | 0.571366 | 4.1:-27196959 | None:intergenic |
| GCGACCTCCAAGCCTTGCCA+AGG | 0.575335 | 4.1:-27194408 | None:intergenic |
| TTGTTGCACAGCAGGGAACA+AGG | 0.580537 | 4.1:+27197086 | MS.gene065913:CDS |
| ATGAACAACAGATTAGGACT+AGG | 0.587827 | 4.1:+27193247 | MS.gene065913:CDS |
| TGAACAACAGATTAGGACTA+GGG | 0.592873 | 4.1:+27193248 | MS.gene065913:CDS |
| GCCACTGTTGTTGCACAGCA+GGG | 0.593186 | 4.1:+27197079 | MS.gene065913:CDS |
| AATCTTCGCGAATGCTGATG+AGG | 0.596731 | 4.1:+27196787 | MS.gene065913:CDS |
| ACCTTCAACAACAAGTATGT+TGG | 0.598982 | 4.1:-27195759 | None:intergenic |
| CCTCTAGTATCTGTTACCGA+TGG | 0.608786 | 4.1:+27196881 | MS.gene065913:CDS |
| ACTGGAACACATGGAGAAGG+AGG | 0.610543 | 4.1:-27196950 | None:intergenic |
| TGGTGGTGAAGATGAAGTGG+AGG | 0.614216 | 4.1:+27193272 | MS.gene065913:CDS |
| AGAAAGAGATCCACCAGCTG+CGG | 0.618980 | 4.1:-27194372 | None:intergenic |
| GTAAGAGCCTCGAAGACCAT+CGG | 0.620653 | 4.1:-27196897 | None:intergenic |
| TCGAGATCCTGCTATAAATG+TGG | 0.626575 | 4.1:+27194436 | MS.gene065913:CDS |
| TGTAAGGAAGCTAGGAGTAA+CGG | 0.626889 | 4.1:+27195827 | MS.gene065913:CDS |
| ACCGATATCGGACCTAACAA+CGG | 0.634403 | 4.1:-27197167 | None:intergenic |
| TCCCTGCTGTGCAACAACAG+TGG | 0.645669 | 4.1:-27197080 | None:intergenic |
| TCTACTGGAACACATGGAGA+AGG | 0.648658 | 4.1:-27196953 | None:intergenic |
| CTAGTAAATCACGAGGAAAG+GGG | 0.650415 | 4.1:+27194311 | MS.gene065913:CDS |
| CAGATTAGGACTAGGGCTGG+TGG | 0.659032 | 4.1:+27193255 | MS.gene065913:CDS |
| CTGGAACACATGGAGAAGGA+GGG | 0.664327 | 4.1:-27196949 | None:intergenic |
| CCATCGGTAACAGATACTAG+AGG | 0.664730 | 4.1:-27196881 | None:intergenic |
| GTAGCGAGCGATCTATTGGG+TGG | 0.668623 | 4.1:+27194473 | MS.gene065913:CDS |
| CATCGGTAACAGATACTAGA+GGG | 0.674610 | 4.1:-27196880 | None:intergenic |
| TGTGTTCCAGTAGACACTTG+TGG | 0.718891 | 4.1:+27196962 | MS.gene065913:CDS |
| AAGAAAACTAGTAAATCACG+AGG | 0.766643 | 4.1:+27194304 | MS.gene065913:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATGTATAATAAATA+GGG | + | chr4.1:27193927-27193946 | MS.gene065913:intron | 10.0% |
| !! | ATCATAATAAAAGTTATAAA+TGG | - | chr4.1:27193659-27193678 | None:intergenic | 10.0% |
| !!! | AATTTTTATTTCATTATGAA+TGG | + | chr4.1:27195128-27195147 | MS.gene065913:intron | 10.0% |
| !! | AAAAGATGTATAATAAATAG+GGG | + | chr4.1:27193928-27193947 | MS.gene065913:intron | 15.0% |
| !! | AAAGAAATAATTAATGTAGT+TGG | + | chr4.1:27193960-27193979 | MS.gene065913:intron | 15.0% |
| !! | AATAATCAATAACAATATTG+TGG | - | chr4.1:27195386-27195405 | None:intergenic | 15.0% |
| !! | AATATGTTTGTAATTACTAT+TGG | + | chr4.1:27193833-27193852 | MS.gene065913:intron | 15.0% |
| !! | AATTGTATTTACCTTTATTA+AGG | + | chr4.1:27195586-27195605 | MS.gene065913:intron | 15.0% |
| !! | ATAAGCTATTTATATAACAA+AGG | - | chr4.1:27193545-27193564 | None:intergenic | 15.0% |
| !! | ATAATCAATAACAATATTGT+GGG | - | chr4.1:27195385-27195404 | None:intergenic | 15.0% |
| !! | GAAAAAGATGTATAATAAAT+AGG | + | chr4.1:27193926-27193945 | MS.gene065913:intron | 15.0% |
| !! | AAGTTGAAATTCAAAAGATT+CGG | - | chr4.1:27197140-27197159 | None:intergenic | 20.0% |
| !! | AGCAAATAAACAATAATTGA+AGG | - | chr4.1:27194103-27194122 | None:intergenic | 20.0% |
| !! | AGCTTATGAAAACAATTTAT+AGG | + | chr4.1:27193488-27193507 | MS.gene065913:intron | 20.0% |
| !! | ATATAAGGAAGAAGTTAATT+TGG | + | chr4.1:27194577-27194596 | MS.gene065913:intron | 20.0% |
| !! | GACAAAAAAAATTCTCAAAA+GGG | + | chr4.1:27194010-27194029 | MS.gene065913:intron | 20.0% |
| !! | GCAAATAAACAATAATTGAA+GGG | - | chr4.1:27194102-27194121 | None:intergenic | 20.0% |
| !! | TCAATTATTGTTTATTTGCT+GGG | + | chr4.1:27194103-27194122 | MS.gene065913:intron | 20.0% |
| !! | TCATTATATGAACTAATGAA+TGG | + | chr4.1:27195649-27195668 | MS.gene065913:intron | 20.0% |
| !! | TGAGATAAATACCAAAATTA+GGG | - | chr4.1:27196188-27196207 | None:intergenic | 20.0% |
| !! | TTCAATTATTGTTTATTTGC+TGG | + | chr4.1:27194102-27194121 | MS.gene065913:intron | 20.0% |
| !! | TTCATTATTATTAGTGAACA+AGG | - | chr4.1:27196036-27196055 | None:intergenic | 20.0% |
| !!! | AATCGTTTATCTTTAATTTC+TGG | - | chr4.1:27196523-27196542 | None:intergenic | 20.0% |
| !!! | AATGAATAGTGAATTTGTTA+GGG | + | chr4.1:27196050-27196069 | MS.gene065913:intron | 20.0% |
| !!! | ATCTCAGTTTTATAAAATGT+GGG | + | chr4.1:27196202-27196221 | MS.gene065913:intron | 20.0% |
| !!! | ATGCTATTTTTGGAAATTTT+AGG | + | chr4.1:27195552-27195571 | MS.gene065913:intron | 20.0% |
| !!! | CTTTTCTTTTTTCAATTTTG+CGG | + | chr4.1:27195626-27195645 | MS.gene065913:intron | 20.0% |
| !!! | TAAGTTCTGATCTTAATTAA+TGG | - | chr4.1:27196637-27196656 | None:intergenic | 20.0% |
| !!! | TAATGAATAGTGAATTTGTT+AGG | + | chr4.1:27196049-27196068 | MS.gene065913:intron | 20.0% |
| !!! | TATCTCAGTTTTATAAAATG+TGG | + | chr4.1:27196201-27196220 | MS.gene065913:intron | 20.0% |
| !!! | TTTTATTTGTTCATTCAACA+GGG | + | chr4.1:27196739-27196758 | MS.gene065913:intron | 20.0% |
| ! | AAAGTAAGTTTAATGTTTCC+AGG | - | chr4.1:27195348-27195367 | None:intergenic | 25.0% |
| ! | AAGATCAGAACTTAATCTTA+CGG | + | chr4.1:27196643-27196662 | MS.gene065913:intron | 25.0% |
| ! | AATTGTATAGAAATGAGAGA+AGG | - | chr4.1:27194610-27194629 | None:intergenic | 25.0% |
| ! | ATGTTGAATCAATCAACAAT+AGG | + | chr4.1:27195056-27195075 | MS.gene065913:intron | 25.0% |
| ! | CTGAGATAAATACCAAAATT+AGG | - | chr4.1:27196189-27196208 | None:intergenic | 25.0% |
| ! | CTTTATTAAGGCTAAATCTT+TGG | + | chr4.1:27195598-27195617 | MS.gene065913:intron | 25.0% |
| ! | GAGATAAATACCAAAATTAG+GGG | - | chr4.1:27196187-27196206 | None:intergenic | 25.0% |
| ! | GGACAAAAAAAATTCTCAAA+AGG | + | chr4.1:27194009-27194028 | MS.gene065913:intron | 25.0% |
| ! | GTATGATTTACAAGAATACA+CGG | + | chr4.1:27196567-27196586 | MS.gene065913:intron | 25.0% |
| ! | GTTATTGCTTTAATAGTATC+AGG | - | chr4.1:27195800-27195819 | None:intergenic | 25.0% |
| ! | TACATCATACATCATACAAT+TGG | + | chr4.1:27194172-27194191 | MS.gene065913:intron | 25.0% |
| ! | TATAATCAATATGTGTGTGA+TGG | + | chr4.1:27196265-27196284 | MS.gene065913:intron | 25.0% |
| ! | TATGATTTACAAGAATACAC+GGG | + | chr4.1:27196568-27196587 | MS.gene065913:intron | 25.0% |
| ! | TCTTACAAGTTACAAGTAAA+GGG | - | chr4.1:27193723-27193742 | None:intergenic | 25.0% |
| ! | TGGAACTTAAATGTTAAAGA+AGG | - | chr4.1:27195171-27195190 | None:intergenic | 25.0% |
| ! | TTCTTACAAGTTACAAGTAA+AGG | - | chr4.1:27193724-27193743 | None:intergenic | 25.0% |
| ! | TTGAAAGCTAATAACAGTAA+AGG | - | chr4.1:27196353-27196372 | None:intergenic | 25.0% |
| !! | AAGAATTTGGGATTAGAAAA+GGG | + | chr4.1:27194278-27194297 | MS.gene065913:CDS | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr4.1:27193593-27193612 | MS.gene065913:intron | 25.0% |
| !! | TAATAATGTTGACTGTTTGA+AGG | - | chr4.1:27194075-27194094 | None:intergenic | 25.0% |
| !! | TCAAAAGGGTCTTATAATTA+GGG | + | chr4.1:27194024-27194043 | MS.gene065913:intron | 25.0% |
| !! | TCTGTGAAATGATTTTTCTA+AGG | + | chr4.1:27194917-27194936 | MS.gene065913:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr4.1:27193594-27193613 | MS.gene065913:intron | 25.0% |
| !!! | AATTTTATCCTTTAAGAGAG+AGG | + | chr4.1:27193862-27193881 | MS.gene065913:intron | 25.0% |
| !!! | ATATTGTATGGTGTTTTAAG+AGG | + | chr4.1:27197010-27197029 | MS.gene065913:CDS | 25.0% |
| !!! | ATTCACTTGTATGCTATTTT+TGG | + | chr4.1:27195542-27195561 | MS.gene065913:intron | 25.0% |
| !!! | ATTCCCGTTATTTTTTCAAA+AGG | - | chr4.1:27193790-27193809 | None:intergenic | 25.0% |
| !!! | ATTTTATCCTTTAAGAGAGA+GGG | + | chr4.1:27193863-27193882 | MS.gene065913:intron | 25.0% |
| !!! | CAAAGATTTAGCCTTAATAA+AGG | - | chr4.1:27195600-27195619 | None:intergenic | 25.0% |
| !!! | CTTTTATTTGTTCATTCAAC+AGG | + | chr4.1:27196738-27196757 | MS.gene065913:intron | 25.0% |
| !!! | TAATTTAACTTGCAACATCT+CGG | + | chr4.1:27196483-27196502 | MS.gene065913:intron | 25.0% |
| !!! | TCTATGTAATTTTGATTCCA+AGG | + | chr4.1:27196817-27196836 | MS.gene065913:CDS | 25.0% |
| !!! | TTCCCGTTATTTTTTCAAAA+GGG | - | chr4.1:27193789-27193808 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTCCTGAAAGAT+GGG | + | chr4.1:27193329-27193348 | MS.gene065913:CDS | 25.0% |
| AAAAGAATGCTTCTCACTTA+TGG | - | chr4.1:27194677-27194696 | None:intergenic | 30.0% | |
| AAACTTACTTTCGATGCATT+GGG | + | chr4.1:27195357-27195376 | MS.gene065913:intron | 30.0% | |
| AAAGAAATTGCACATTTGCT+CGG | - | chr4.1:27194762-27194781 | None:intergenic | 30.0% | |
| AAGAAAACTAGTAAATCACG+AGG | + | chr4.1:27194304-27194323 | MS.gene065913:CDS | 30.0% | |
| AAGATGATGAACAACAGATT+AGG | + | chr4.1:27193241-27193260 | MS.gene065913:CDS | 30.0% | |
| AAGCTAATAACAGTAAAGGT+TGG | - | chr4.1:27196349-27196368 | None:intergenic | 30.0% | |
| AAGTGTATTGCTTAAACTAG+AGG | - | chr4.1:27194991-27195010 | None:intergenic | 30.0% | |
| AATACCAAAATTAGGGGATA+TGG | - | chr4.1:27196181-27196200 | None:intergenic | 30.0% | |
| AATATTTCCAAAACCCTGTT+TGG | - | chr4.1:27193610-27193629 | None:intergenic | 30.0% | |
| AATGAGTTCCTGAAGAATTT+GGG | + | chr4.1:27194266-27194285 | MS.gene065913:CDS | 30.0% | |
| AATTTCAGATGCAGTCAAAT+TGG | + | chr4.1:27197114-27197133 | MS.gene065913:CDS | 30.0% | |
| ACTAATGCACTTACATGATA+AGG | + | chr4.1:27193565-27193584 | MS.gene065913:intron | 30.0% | |
| AGAGACATTATGATCATTTC+TGG | + | chr4.1:27195891-27195910 | MS.gene065913:CDS | 30.0% | |
| AGCAATAACAAAAGCTTGTA+AGG | + | chr4.1:27195811-27195830 | MS.gene065913:CDS | 30.0% | |
| ATAGTATCTCACCACATTTA+CGG | - | chr4.1:27196248-27196267 | None:intergenic | 30.0% | |
| ATGTAGTTGGAAATAGCAAA+TGG | + | chr4.1:27193973-27193992 | MS.gene065913:intron | 30.0% | |
| ATTGCTTAAACTAGAGGAAA+TGG | - | chr4.1:27194985-27195004 | None:intergenic | 30.0% | |
| ATTGTTATGGCTACTTAAGT+TGG | + | chr4.1:27194539-27194558 | MS.gene065913:intron | 30.0% | |
| CATTTCTCATTCAATGTACT+TGG | + | chr4.1:27193392-27193411 | MS.gene065913:intron | 30.0% | |
| GGTAAAAAGAGATGATAACT+AGG | + | chr4.1:27196391-27196410 | MS.gene065913:intron | 30.0% | |
| GTGTCGGATTTAAGAAATAT+AGG | + | chr4.1:27197034-27197053 | MS.gene065913:CDS | 30.0% | |
| GTTCTCTGATCAAATTGTTA+TGG | + | chr4.1:27194526-27194545 | MS.gene065913:intron | 30.0% | |
| TAAACTTACTTTCGATGCAT+TGG | + | chr4.1:27195356-27195375 | MS.gene065913:intron | 30.0% | |
| TAATGAGTTCCTGAAGAATT+TGG | + | chr4.1:27194265-27194284 | MS.gene065913:CDS | 30.0% | |
| TATGTGTGTGATGGTAAATA+TGG | + | chr4.1:27196274-27196293 | MS.gene065913:intron | 30.0% | |
| TCAAAAGGGTCCTATAATTA+GGG | - | chr4.1:27193775-27193794 | None:intergenic | 30.0% | |
| TGTAGTTGGAAATAGCAAAT+GGG | + | chr4.1:27193974-27193993 | MS.gene065913:intron | 30.0% | |
| TTCAAAAGGGTCCTATAATT+AGG | - | chr4.1:27193776-27193795 | None:intergenic | 30.0% | |
| TTCTAATACTTTAGTTGCCT+TGG | + | chr4.1:27194391-27194410 | MS.gene065913:CDS | 30.0% | |
| TTGCTTAAACTAGAGGAAAT+GGG | - | chr4.1:27194984-27195003 | None:intergenic | 30.0% | |
| TTGTTATGGCTACTTAAGTT+GGG | + | chr4.1:27194540-27194559 | MS.gene065913:intron | 30.0% | |
| TTTCTAATCCCAAATTCTTC+AGG | - | chr4.1:27194277-27194296 | None:intergenic | 30.0% | |
| TTTGTTAGGGTAAAGTGTAA+TGG | + | chr4.1:27196063-27196082 | MS.gene065913:intron | 30.0% | |
| ! | AATAACGGGAATTAAGATAG+TGG | + | chr4.1:27193798-27193817 | MS.gene065913:intron | 30.0% |
| ! | AGCAAATGGGTCTTATAAAA+AGG | + | chr4.1:27193987-27194006 | MS.gene065913:intron | 30.0% |
| ! | AGTTATCATCTCTTTTTACC+AGG | - | chr4.1:27196391-27196410 | None:intergenic | 30.0% |
| ! | ATGATGATGATGAAGAAGAA+GGG | + | chr4.1:27193295-27193314 | MS.gene065913:CDS | 30.0% |
| ! | CTCAAAAGGGTCTTATAATT+AGG | + | chr4.1:27194023-27194042 | MS.gene065913:intron | 30.0% |
| ! | GAAGAATTTGGGATTAGAAA+AGG | + | chr4.1:27194277-27194296 | MS.gene065913:CDS | 30.0% |
| ! | GCAAATGGGTCTTATAAAAA+GGG | + | chr4.1:27193988-27194007 | MS.gene065913:intron | 30.0% |
| ! | TTTCTGGTAAGATTATTACG+CGG | + | chr4.1:27195907-27195926 | MS.gene065913:intron | 30.0% |
| ! | TTTGGTTGGATTTTGCAATA+TGG | + | chr4.1:27194694-27194713 | MS.gene065913:intron | 30.0% |
| !! | GACCCTTTTGAAAAAATAAC+GGG | + | chr4.1:27193784-27193803 | MS.gene065913:intron | 30.0% |
| !! | GCAATCATTTTGACATAAAG+TGG | - | chr4.1:27195966-27195985 | None:intergenic | 30.0% |
| !! | GGACCCTTTTGAAAAAATAA+CGG | + | chr4.1:27193783-27193802 | MS.gene065913:intron | 30.0% |
| !! | GTTGTTTTGCGAATTCTTTT+AGG | + | chr4.1:27194220-27194239 | MS.gene065913:intron | 30.0% |
| !! | TTCTTTTAGGTAGACTTTTC+TGG | + | chr4.1:27194233-27194252 | MS.gene065913:intron | 30.0% |
| !!! | ATAAGTGAGAAGCATTCTTT+TGG | + | chr4.1:27194676-27194695 | MS.gene065913:intron | 30.0% |
| !!! | CTTTTGTTTTTCCTGAAAGA+TGG | + | chr4.1:27193328-27193347 | MS.gene065913:CDS | 30.0% |
| !!! | GGCTGTTTTAGTTTCATATA+AGG | + | chr4.1:27194562-27194581 | MS.gene065913:intron | 30.0% |
| AACTAGTAAATCACGAGGAA+AGG | + | chr4.1:27194309-27194328 | MS.gene065913:CDS | 35.0% | |
| AACTTGATACATCCGTTGTT+AGG | + | chr4.1:27197155-27197174 | MS.gene065913:CDS | 35.0% | |
| ACCTTCAACAACAAGTATGT+TGG | - | chr4.1:27195762-27195781 | None:intergenic | 35.0% | |
| ACTAGTAAATCACGAGGAAA+GGG | + | chr4.1:27194310-27194329 | MS.gene065913:CDS | 35.0% | |
| AGCATGTGTATGTGTTTCTT+CGG | - | chr4.1:27195022-27195041 | None:intergenic | 35.0% | |
| ATGAACAACAGATTAGGACT+AGG | + | chr4.1:27193247-27193266 | MS.gene065913:CDS | 35.0% | |
| ATTTCTGTATTCTGGTGACA+GGG | + | chr4.1:27195683-27195702 | MS.gene065913:intron | 35.0% | |
| ATTTCTTTCTGCACCTATCA+AGG | + | chr4.1:27194774-27194793 | MS.gene065913:CDS | 35.0% | |
| CATCATCTTCTTCTTCATCA+TGG | - | chr4.1:27193230-27193249 | None:intergenic | 35.0% | |
| CATTCAATGTACTTGGAAGT+TGG | + | chr4.1:27193399-27193418 | MS.gene065913:intron | 35.0% | |
| GACAACCTAATCAAACTTGT+CGG | + | chr4.1:27196453-27196472 | MS.gene065913:intron | 35.0% | |
| GGGAAATCTCATGTATACTT+TGG | + | chr4.1:27194123-27194142 | MS.gene065913:intron | 35.0% | |
| GTATTCCACAAGAATAACCA+AGG | - | chr4.1:27195297-27195316 | None:intergenic | 35.0% | |
| TAGTATCTCACCACATTTAC+GGG | - | chr4.1:27196247-27196266 | None:intergenic | 35.0% | |
| TAGTTCCGACAAGTTTGATT+AGG | - | chr4.1:27196461-27196480 | None:intergenic | 35.0% | |
| TATAGGTACAATAGCAGCTA+AGG | + | chr4.1:27197051-27197070 | MS.gene065913:CDS | 35.0% | |
| TATGCATCTGGCATATTGTA+TGG | + | chr4.1:27196998-27197017 | MS.gene065913:CDS | 35.0% | |
| TATTATTAGTGAACAAGGCC+AGG | - | chr4.1:27196031-27196050 | None:intergenic | 35.0% | |
| TCATTCAACAGGGAAATTGT+AGG | + | chr4.1:27196749-27196768 | MS.gene065913:intron | 35.0% | |
| TGAACAACAGATTAGGACTA+GGG | + | chr4.1:27193248-27193267 | MS.gene065913:CDS | 35.0% | |
| TGCTTAAACTAGAGGAAATG+GGG | - | chr4.1:27194983-27195002 | None:intergenic | 35.0% | |
| TGTATTGTGTATAGTCAGCA+AGG | - | chr4.1:27195443-27195462 | None:intergenic | 35.0% | |
| TGTGTGATGGTAAATATGGT+AGG | + | chr4.1:27196278-27196297 | MS.gene065913:intron | 35.0% | |
| ! | AAGGGTCTTATAATTAGGGA+CGG | + | chr4.1:27194028-27194047 | MS.gene065913:intron | 35.0% |
| ! | CTGAAAGATGGGATGTTTTA+GGG | + | chr4.1:27193340-27193359 | MS.gene065913:CDS | 35.0% |
| ! | GATGATGATGATGAAGAAGA+AGG | + | chr4.1:27193294-27193313 | MS.gene065913:CDS | 35.0% |
| ! | GCGCTAATATTTCTGTATTC+TGG | + | chr4.1:27195675-27195694 | MS.gene065913:intron | 35.0% |
| ! | GTCATTGTTCTGAACTAACA+CGG | - | chr4.1:27196135-27196154 | None:intergenic | 35.0% |
| ! | TATTTCTGTATTCTGGTGAC+AGG | + | chr4.1:27195682-27195701 | MS.gene065913:intron | 35.0% |
| ! | TGTTATGGCTACTTAAGTTG+GGG | + | chr4.1:27194541-27194560 | MS.gene065913:intron | 35.0% |
| ! | TGTTTATCCAAACAGGGTTT+TGG | + | chr4.1:27193600-27193619 | MS.gene065913:intron | 35.0% |
| ! | TTGAAATGCTTTGTTCAACC+TGG | + | chr4.1:27195327-27195346 | MS.gene065913:intron | 35.0% |
| !! | ACCAACATACTTGTTGTTGA+AGG | + | chr4.1:27195758-27195777 | MS.gene065913:CDS | 35.0% |
| AAACCAACCCTCTCTCTTAA+AGG | - | chr4.1:27193873-27193892 | None:intergenic | 40.0% | |
| AAGGGTCCTATAATTAGGGA+CGG | - | chr4.1:27193771-27193790 | None:intergenic | 40.0% | |
| AAGTGAATCAACCAGAAGAG+AGG | - | chr4.1:27195530-27195549 | None:intergenic | 40.0% | |
| ACGAACAATGCTTGCATATC+AGG | + | chr4.1:27194843-27194862 | MS.gene065913:CDS | 40.0% | |
| AGAATCCTCAAAGTGCAACA+AGG | - | chr4.1:27194900-27194919 | None:intergenic | 40.0% | |
| AGCATTCATCCTATTAAGCC+TGG | + | chr4.1:27196010-27196029 | MS.gene065913:intron | 40.0% | |
| AGTATCTCACCACATTTACG+GGG | - | chr4.1:27196246-27196265 | None:intergenic | 40.0% | |
| AGTGAATCAACCAGAAGAGA+GGG | - | chr4.1:27195529-27195548 | None:intergenic | 40.0% | |
| ATACTTTAGTTGCCTTGGCA+AGG | + | chr4.1:27194396-27194415 | MS.gene065913:CDS | 40.0% | |
| ATCATAATGTCTCTCGATGC+AGG | - | chr4.1:27195885-27195904 | None:intergenic | 40.0% | |
| ATCGAGTTTATCCTCTACCT+TGG | + | chr4.1:27195277-27195296 | MS.gene065913:intron | 40.0% | |
| ATGATAACTAGGCTGTGAGA+AGG | + | chr4.1:27196402-27196421 | MS.gene065913:intron | 40.0% | |
| CAAAAGCTTGTAAGGAAGCT+AGG | + | chr4.1:27195819-27195838 | MS.gene065913:CDS | 40.0% | |
| CACAAGAATAACCAAGGTAG+AGG | - | chr4.1:27195291-27195310 | None:intergenic | 40.0% | |
| CATCGGTAACAGATACTAGA+GGG | - | chr4.1:27196883-27196902 | None:intergenic | 40.0% | |
| CCTAAAACATCCCATCTTTC+AGG | - | chr4.1:27193342-27193361 | None:intergenic | 40.0% | |
| CTAGTAAATCACGAGGAAAG+GGG | + | chr4.1:27194311-27194330 | MS.gene065913:CDS | 40.0% | |
| CTCTACCTTGGTTATTCTTG+TGG | + | chr4.1:27195289-27195308 | MS.gene065913:intron | 40.0% | |
| TCCTGCTATAAATGTGGCAA+TGG | + | chr4.1:27194442-27194461 | MS.gene065913:CDS | 40.0% | |
| TCGAGATCCTGCTATAAATG+TGG | + | chr4.1:27194436-27194455 | MS.gene065913:CDS | 40.0% | |
| TGCGTGTAGCATACAATTGA+TGG | - | chr4.1:27195191-27195210 | None:intergenic | 40.0% | |
| TGTAAGGAAGCTAGGAGTAA+CGG | + | chr4.1:27195827-27195846 | MS.gene065913:CDS | 40.0% | |
| TTTATAGCTGCAACCATCCA+TGG | - | chr4.1:27194351-27194370 | None:intergenic | 40.0% | |
| ! | ACTGCCATATCCCCTAATTT+TGG | + | chr4.1:27196174-27196193 | MS.gene065913:intron | 40.0% |
| ! | CAATTGCTTCATTTGAGACC+TGG | + | chr4.1:27196370-27196389 | MS.gene065913:intron | 40.0% |
| ! | CCTGAAAGATGGGATGTTTT+AGG | + | chr4.1:27193339-27193358 | MS.gene065913:CDS | 40.0% |
| ! | TATCCTTTAAGAGAGAGGGT+TGG | + | chr4.1:27193867-27193886 | MS.gene065913:intron | 40.0% |
| !! | AGAGCACTGTTTCTGTTACA+AGG | + | chr4.1:27196840-27196859 | MS.gene065913:CDS | 40.0% |
| !!! | GTGAGAAGCATTCTTTTGGT+TGG | + | chr4.1:27194680-27194699 | MS.gene065913:intron | 40.0% |
| AACAGAAACAGTGCTCTCCT+TGG | - | chr4.1:27196837-27196856 | None:intergenic | 45.0% | |
| AATCTTCGCGAATGCTGATG+AGG | + | chr4.1:27196787-27196806 | MS.gene065913:CDS | 45.0% | |
| ACCGATATCGGACCTAACAA+CGG | - | chr4.1:27197170-27197189 | None:intergenic | 45.0% | |
| AGAGAACAGTGCAGTTACGA+GGG | - | chr4.1:27194513-27194532 | None:intergenic | 45.0% | |
| AGCATTGTTCGTTGAGCATC+TGG | - | chr4.1:27194835-27194854 | None:intergenic | 45.0% | |
| AGTGTAGCGAGCGATCTATT+GGG | + | chr4.1:27194470-27194489 | MS.gene065913:CDS | 45.0% | |
| ATCTATTGGGTGGCTTCTAC+AGG | + | chr4.1:27194483-27194502 | MS.gene065913:CDS | 45.0% | |
| CAAGTGTCTACTGGAACACA+TGG | - | chr4.1:27196962-27196981 | None:intergenic | 45.0% | |
| CACTTCCTTGTTGCACTTTG+AGG | + | chr4.1:27194892-27194911 | MS.gene065913:intron | 45.0% | |
| CCATCGGTAACAGATACTAG+AGG | - | chr4.1:27196884-27196903 | None:intergenic | 45.0% | |
| CCTCTAGTATCTGTTACCGA+TGG | + | chr4.1:27196881-27196900 | MS.gene065913:CDS | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | + | chr4.1:27193762-27193781 | MS.gene065913:intron | 45.0% | |
| CTCAAAGTGCAACAAGGAAG+TGG | - | chr4.1:27194894-27194913 | None:intergenic | 45.0% | |
| CTTAGAAACTGCACTTGCCA+GGG | - | chr4.1:27195738-27195757 | None:intergenic | 45.0% | |
| GCCATTGCCACATTTATAGC+AGG | - | chr4.1:27194446-27194465 | None:intergenic | 45.0% | |
| GCTATAAATGTGGCAATGGC+TGG | + | chr4.1:27194446-27194465 | MS.gene065913:CDS | 45.0% | |
| GGATAAACTCGATGCTCATC+AGG | - | chr4.1:27195270-27195289 | None:intergenic | 45.0% | |
| GGCTCTTACATAGGCGTAAA+AGG | + | chr4.1:27196911-27196930 | MS.gene065913:CDS | 45.0% | |
| TAACTAGGCTGTGAGAAGGA+TGG | + | chr4.1:27196406-27196425 | MS.gene065913:intron | 45.0% | |
| TCCGTTGTTAGGTCCGATAT+CGG | + | chr4.1:27197166-27197185 | MS.gene065913:CDS | 45.0% | |
| TCTAAGAGACCCCGTAAATG+TGG | + | chr4.1:27196234-27196253 | MS.gene065913:intron | 45.0% | |
| TCTACTGGAACACATGGAGA+AGG | - | chr4.1:27196956-27196975 | None:intergenic | 45.0% | |
| TCTTAGAAACTGCACTTGCC+AGG | - | chr4.1:27195739-27195758 | None:intergenic | 45.0% | |
| TGAACAAGGCCAGGCTTAAT+AGG | - | chr4.1:27196022-27196041 | None:intergenic | 45.0% | |
| TGTGTTCCAGTAGACACTTG+TGG | + | chr4.1:27196962-27196981 | MS.gene065913:CDS | 45.0% | |
| ! | AGAGTTTTGCAAGCCATGGA+TGG | + | chr4.1:27194335-27194354 | MS.gene065913:CDS | 45.0% |
| ! | GGTCTTATAATTAGGGACGG+AGG | + | chr4.1:27194031-27194050 | MS.gene065913:intron | 45.0% |
| ! | TTTAGGGCTTGGACAAGCTA+TGG | + | chr4.1:27193356-27193375 | MS.gene065913:CDS | 45.0% |
| !!! | AGATGGGATGTTTTAGGGCT+TGG | + | chr4.1:27193345-27193364 | MS.gene065913:CDS | 45.0% |
| !!! | TGGTGTTTTAAGAGGCGTGT+CGG | + | chr4.1:27197018-27197037 | MS.gene065913:CDS | 45.0% |
| !!! | TACATTTATTTTAAATTTTA+GGG | + | chr4.1:27194726-27194745 | MS.gene065913:intron | 5.0% |
| !!! | TTACATTTATTTTAAATTTT+AGG | + | chr4.1:27194725-27194744 | MS.gene065913:intron | 5.0% |
| AAGGATGGAAGGGGAAGGAA+AGG | + | chr4.1:27196421-27196440 | MS.gene065913:intron | 50.0% | |
| ACTGGAACACATGGAGAAGG+AGG | - | chr4.1:27196953-27196972 | None:intergenic | 50.0% | |
| AGAAAGAGATCCACCAGCTG+CGG | - | chr4.1:27194375-27194394 | None:intergenic | 50.0% | |
| AGCTAGGAGTAACGGTGCTT+TGG | + | chr4.1:27195835-27195854 | MS.gene065913:CDS | 50.0% | |
| AGGCTGTGAGAAGGATGGAA+GGG | + | chr4.1:27196411-27196430 | MS.gene065913:intron | 50.0% | |
| CAACAGATTAGGACTAGGGC+TGG | + | chr4.1:27193252-27193271 | MS.gene065913:CDS | 50.0% | |
| CAGAGAACAGTGCAGTTACG+AGG | - | chr4.1:27194514-27194533 | None:intergenic | 50.0% | |
| CAGTGTAGCGAGCGATCTAT+TGG | + | chr4.1:27194469-27194488 | MS.gene065913:CDS | 50.0% | |
| CCAGTTGTCGCATCCTTGAT+AGG | - | chr4.1:27194790-27194809 | None:intergenic | 50.0% | |
| CCTATCAAGGATGCGACAAC+TGG | + | chr4.1:27194787-27194806 | MS.gene065913:CDS | 50.0% | |
| CTGGAACACATGGAGAAGGA+GGG | - | chr4.1:27196952-27196971 | None:intergenic | 50.0% | |
| GGTCCTATAATTAGGGACGG+AGG | - | chr4.1:27193768-27193787 | None:intergenic | 50.0% | |
| GGTCTTCGAGGCTCTTACAT+AGG | + | chr4.1:27196902-27196921 | MS.gene065913:CDS | 50.0% | |
| GTAAGAGCCTCGAAGACCAT+CGG | - | chr4.1:27196900-27196919 | None:intergenic | 50.0% | |
| TAGGCTGTGAGAAGGATGGA+AGG | + | chr4.1:27196410-27196429 | MS.gene065913:intron | 50.0% | |
| TCTGTTACCGATGGTCTTCG+AGG | + | chr4.1:27196890-27196909 | MS.gene065913:CDS | 50.0% | |
| TGTCAACTTCGACACTTCCC+TGG | + | chr4.1:27195718-27195737 | MS.gene065913:CDS | 50.0% | |
| TTAGTTGCCTTGGCAAGGCT+TGG | + | chr4.1:27194401-27194420 | MS.gene065913:CDS | 50.0% | |
| TTCTCACTTGCCCTCTCTTC+TGG | + | chr4.1:27195516-27195535 | MS.gene065913:intron | 50.0% | |
| TTGTTGCACAGCAGGGAACA+AGG | + | chr4.1:27197086-27197105 | MS.gene065913:CDS | 50.0% | |
| ! | GCTGGTGATGCATATGCATC+TGG | + | chr4.1:27196986-27197005 | MS.gene065913:CDS | 50.0% |
| ! | GGGTAGAGTTTTGCAAGCCA+TGG | + | chr4.1:27194331-27194350 | MS.gene065913:CDS | 50.0% |
| ! | TGGTGGTGAAGATGAAGTGG+AGG | + | chr4.1:27193272-27193291 | MS.gene065913:CDS | 50.0% |
| AGCCACTGTTGTTGCACAGC+AGG | + | chr4.1:27197078-27197097 | MS.gene065913:CDS | 55.0% | |
| AGCTATAAAGCCGCAGCTGG+TGG | + | chr4.1:27194362-27194381 | MS.gene065913:CDS | 55.0% | |
| CAGATTAGGACTAGGGCTGG+TGG | + | chr4.1:27193255-27193274 | MS.gene065913:CDS | 55.0% | |
| CCAGCACCACAAGTGTCTAC+TGG | - | chr4.1:27196971-27196990 | None:intergenic | 55.0% | |
| CCAGTAGACACTTGTGGTGC+TGG | + | chr4.1:27196968-27196987 | MS.gene065913:CDS | 55.0% | |
| GCCACTGTTGTTGCACAGCA+GGG | + | chr4.1:27197079-27197098 | MS.gene065913:CDS | 55.0% | |
| GGCTGTGAGAAGGATGGAAG+GGG | + | chr4.1:27196412-27196431 | MS.gene065913:intron | 55.0% | |
| GTAGCGAGCGATCTATTGGG+TGG | + | chr4.1:27194473-27194492 | MS.gene065913:CDS | 55.0% | |
| GTGAGAAGGATGGAAGGGGA+AGG | + | chr4.1:27196416-27196435 | MS.gene065913:intron | 55.0% | |
| TCCCTGCTGTGCAACAACAG+TGG | - | chr4.1:27197083-27197102 | None:intergenic | 55.0% | |
| TGCAGCTATAAAGCCGCAGC+TGG | + | chr4.1:27194359-27194378 | MS.gene065913:CDS | 55.0% | |
| ! | GGCTGGTGGTGAAGATGAAG+TGG | + | chr4.1:27193269-27193288 | MS.gene065913:CDS | 55.0% |
| !! | GAAGGGGAAGGAAAGGCGTT+TGG | + | chr4.1:27196428-27196447 | MS.gene065913:intron | 55.0% |
| GTTGCCTTGGCAAGGCTTGG+AGG | + | chr4.1:27194404-27194423 | MS.gene065913:CDS | 60.0% | |
| GCGACCTCCAAGCCTTGCCA+AGG | - | chr4.1:27194411-27194430 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 27193213 | 27197198 | 27193213 | ID=MS.gene065913 |
| chr4.1 | mRNA | 27193213 | 27197198 | 27193213 | ID=MS.gene065913.t1;Parent=MS.gene065913 |
| chr4.1 | exon | 27193213 | 27193377 | 27193213 | ID=MS.gene065913.t1.exon1;Parent=MS.gene065913.t1 |
| chr4.1 | CDS | 27193213 | 27193377 | 27193213 | ID=cds.MS.gene065913.t1;Parent=MS.gene065913.t1 |
| chr4.1 | exon | 27194242 | 27194504 | 27194242 | ID=MS.gene065913.t1.exon2;Parent=MS.gene065913.t1 |
| chr4.1 | CDS | 27194242 | 27194504 | 27194242 | ID=cds.MS.gene065913.t1;Parent=MS.gene065913.t1 |
| chr4.1 | exon | 27194747 | 27194864 | 27194747 | ID=MS.gene065913.t1.exon3;Parent=MS.gene065913.t1 |
| chr4.1 | CDS | 27194747 | 27194864 | 27194747 | ID=cds.MS.gene065913.t1;Parent=MS.gene065913.t1 |
| chr4.1 | exon | 27195704 | 27195912 | 27195704 | ID=MS.gene065913.t1.exon4;Parent=MS.gene065913.t1 |
| chr4.1 | CDS | 27195704 | 27195912 | 27195704 | ID=cds.MS.gene065913.t1;Parent=MS.gene065913.t1 |
| chr4.1 | exon | 27196760 | 27197198 | 27196760 | ID=MS.gene065913.t1.exon5;Parent=MS.gene065913.t1 |
| chr4.1 | CDS | 27196760 | 27197198 | 27196760 | ID=cds.MS.gene065913.t1;Parent=MS.gene065913.t1 |
| Gene Sequence |
| Protein sequence |
