AlfalfaGEDB | MS.gene069754

M. sativa cultivar XinJiangDaYe / MS.gene069754

KEGG: -
GO: -
PFAM: PF02622.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069754.t1	XP_003607216.2	96	868	34	1	1	867	224	1091	0.00E+00	1623.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069754.t1	G7JNH2	96.0	868	34	1	1	867	224	1091	0.0e+00	1623.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene069754	0.813257	2.81E-51	-1.69E-46
MS.gene049159	MS.gene069754	0.835968	1.23E-56	-1.69E-46
MS.gene049404	MS.gene069754	0.811126	8.18E-51	-1.69E-46
MS.gene049435	MS.gene069754	0.823844	1.11E-53	-1.69E-46
MS.gene049501	MS.gene069754	0.817089	3.95E-52	-1.69E-46
MS.gene049850	MS.gene069754	0.816948	4.25E-52	-1.69E-46
MS.gene050020	MS.gene069754	0.801963	7.03E-49	-1.69E-46
MS.gene050227	MS.gene069754	0.803626	3.19E-49	-1.69E-46
MS.gene050228	MS.gene069754	0.800609	1.33E-48	-1.69E-46
MS.gene050438	MS.gene069754	0.804074	2.57E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069754.t1	MTR_4g074610	95.968	868	34	1	1	867	224	1091	0.0	1723

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene069754.t1	AT3G19780	38.300	906	481	21	1	867	1	867	561
MS.gene069754.t1	AT3G19780	38.300	906	481	21	1	867	192	1058	561
MS.gene069754.t1	AT3G19780	38.258	907	481	21	1	867	192	1059	560
MS.gene069754.t1	AT3G19780	38.695	858	463	17	43	867	22	849	554

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Find 178 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGTTCTCTAGCAA+AGG	0.577164	4.2:+34283301	MS.gene069754:CDS
AAAGAACTCACTTGTAGATC+AGG	0.414529	4.2:-34283236	None:intergenic
AAAGAGGCTCCTTTGTCCCT+TGG	0.363881	4.2:+34286412	MS.gene069754:CDS
AAAGCTTGAGATGTGATTCG+AGG	0.575128	4.2:-34283995	None:intergenic
AAATCCAAATTAACAAATGG+AGG	0.598901	4.2:-34283953	None:intergenic
AACAAATATGATGGAGCCCT+AGG	0.620788	4.2:+34286136	MS.gene069754:CDS
AACAACTTGAACACCCAGCT+AGG	0.615039	4.2:-34282493	None:intergenic
AACATAATGTTGCTGCCAAA+AGG	0.403509	4.2:-34283804	None:intergenic
AACATGTTCTTCAAGGCCAA+AGG	0.567288	4.2:+34283918	MS.gene069754:CDS
AACTTCACAAAACCCTTTAT+CGG	0.390445	4.2:-34282219	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAAGTTCTCTAGCAA+AGG	+	chr4.2:34283301-34283320	MS.gene069754:CDS	30.0%
AACAGTAGACAAGAAATTAC+AGG	-	chr4.2:34285967-34285986	None:intergenic	30.0%
AACTTCACAAAACCCTTTAT+CGG	-	chr4.2:34282222-34282241	None:intergenic	30.0%
AAGAAAACACTTCAAATGCA+TGG	+	chr4.2:34284053-34284072	MS.gene069754:CDS	30.0%
AAGCAAAAATTCTTGCATGT+TGG	-	chr4.2:34282811-34282830	None:intergenic	30.0%
AATGATAAGACCTTGAAATC+CGG	-	chr4.2:34286344-34286363	None:intergenic	30.0%
ACATGTTCTGACAATTGATA+TGG	-	chr4.2:34283905-34283924	None:intergenic	30.0%
ACCTTCATTAATAATCGTGA+TGG	-	chr4.2:34283189-34283208	None:intergenic	30.0%
AGACTTGGAAAAATTGAAAG+AGG	+	chr4.2:34286396-34286415	MS.gene069754:CDS	30.0%
AGCAATGAAATATGACATCT+TGG	-	chr4.2:34282633-34282652	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	34282197	34286708	34282197	ID=MS.gene069754
chr4.2	mRNA	34282197	34286708	34282197	ID=MS.gene069754.t1;Parent=MS.gene069754
chr4.2	exon	34282197	34282583	34282197	ID=MS.gene069754.t1.exon1;Parent=MS.gene069754.t1
chr4.2	CDS	34282197	34282583	34282197	ID=cds.MS.gene069754.t1;Parent=MS.gene069754.t1
chr4.2	exon	34282888	34284205	34282888	ID=MS.gene069754.t1.exon2;Parent=MS.gene069754.t1
chr4.2	CDS	34282888	34284205	34282888	ID=cds.MS.gene069754.t1;Parent=MS.gene069754.t1
chr4.2	exon	34284682	34284773	34284682	ID=MS.gene069754.t1.exon3;Parent=MS.gene069754.t1
chr4.2	CDS	34284682	34284773	34284682	ID=cds.MS.gene069754.t1;Parent=MS.gene069754.t1
chr4.2	exon	34285590	34285731	34285590	ID=MS.gene069754.t1.exon4;Parent=MS.gene069754.t1
chr4.2	CDS	34285590	34285731	34285590	ID=cds.MS.gene069754.t1;Parent=MS.gene069754.t1
chr4.2	exon	34286044	34286708	34286044	ID=MS.gene069754.t1.exon5;Parent=MS.gene069754.t1
chr4.2	CDS	34286044	34286708	34286044	ID=cds.MS.gene069754.t1;Parent=MS.gene069754.t1

Gene Sequence

>MS.gene069754

ATGTGCAAGGTTGAGCACAGCACCGATAAAGGGTTTTGTGAAGTTCCTTCGCTTTGGGAATTTAGCTCAGTTAATGATGGCCGTTTGGGGGGCTTCACGGATCAGAACAGTCATAATCTAAATCCCTGTTCATTTGAAGAATTTGAGCGTTTCCACTCTTTCTACGAGAAATTCATGAATGCTGTGAAAGAATTTTTTCTGCCTTCTGAACGTCATAGATTTGGTCTGGTTTCCGATAGGGCGATGCTTTCATCCTTAGGTGTTGCTGATTCTGGTTCATGGTTTGCAGTTCGCTACCTAGCTGGGTGTTCAAGTTGTTCACATATTCTTAAAGAAGAGGATGACTTGAACTATGTTTTGCAGAGGAATAATTATTTTGTCAAAGAGGTGAATAAAACCTTTCTAACTATTCTTCTATATTTTGTGGTGTATGCCAAGATGTCATATTTCATTGCTCCCTTATCCCATCTCCAAGCCCAACTTTGACTGTACTTGTCATGAATCAACTATCCTGAAATCCTTTGTTAAGTAAAGCCATATGAATGATTTTACATTGAAATTCCAATGCTATTGTTGTAGAGTTGTTTATTTATCTGATGTAGATATGCGCGCCAACATGCAAGAATTTTTGCTTCGTTCAATCAAATAATCTCTGTATGAGTTTTACACTGATTTGTTTGTTTTCATTTAGTTGGAAGGCAATGATCACAATCAAGAAGCCACTATTCCAGCAAATAAGCCGTCAGTACTTCTATTTGTTGACAGATCATCCGACTCCTCAGAAACTAGGGGAAAGAGTATGGAAGCTCTTAAAGCTCTTAGAGTATTGGCACAGCATTATCATGTGAATCAAATAGATACAAAGAATAATGGTAATCACAAAAAAGTTTCTATCCGAAATTATCGTGGCACAAAGAGCACACCTGATCTTCTTAAGTCAAATTCGGTGATGAAAGCTCAGAAGATTAAACTAAACAAGAAGATATCTTCCATCACGATTATTAATGAAGGTAAACAAGTTAGTGTGGATAATGTAGCCCCTGATCTACAAGTGAGTTCTTTGAATGAGTTATTGAGTTACATTGTCCAGCAAAAGAAGGATGGAAAACTAAGTTCTCTAGCAAAGGATTTAGGTTTCCAACTTTTATCCGGTGATATTGACATTAGTTCAGCTAATACACAACAACAATTGCATTCAGAAGTTCAGTCAAATCAAATTTCAGCAGAAACTTCTCAAGAAGATCATACAGGTAGTACTGCAATGACAGAAGGCTATCCATATAAATCTGCTGTAGAGCCTGGGAAAAATCCCAAACTGGTCGTGCTATCTTCTCAGCATGAAGTCAAGAAATCTTCTATTGTCACCAGTGAAGAGATAAAAGCAGTGAAATCTGAAGAATCCATCATAGATCACGGACTTCCTAGTGCAAAAATTATTCAATCAGAAATAGATAGTTCCACCGATGGTTCTTCTGATGGAAACAATAATGGAAAACAGGATCATTTTCTTGGTTTTAATGGTTCCTTTTTCTATTCTGATGGTAATTATCAATTGCTTGAAAGGCTCACTGGTACTTCTAGAATTCCGTCTTTGGTCATAGTTGATCCCTTTTGGCAGCAACATTATGTTTACCCTGAAGAGAAAAGTTTCAACTATGCTTCAATGTATGGTTTTCTTTCTGAGTTTCTTAATGGAACCCTGGTTCCATATCAATTGTCAGAACATGTTCTTCAAGGCCAAAGGGAGGCCATGCGTCCTCCATTTGTTAATTTGGATTTTCATGAGGTGGATTCTATACCTCGAATCACATCTCAAGCTTTCTCTGAATTTGTTATTGGTTTCAACCGTTCTAACAAAGAAAACACTTCAAATGCATGGAATAAAGATGTCTTGGTCTTGTTTAGCAATAGTTGGTGTGCATTCTGCCAGAGAATGGAATTGATTGTTCGTGAAGTATATCGGGCCATCAAGGGTCATGTTGATACATTAAAGGGGGGATCTGATAACGGTGAGAATTTGACTGTATGTATGTGTTTGTCTTTCTTTATCATCCTATATTTTACTTGTTTTTTTTTTTTTTTGAAGAAACCTATATTTTACTTGCTTAATGTTTATCTTATTTATTTTAGCACATTTTTGCTAAAACGTGAGTATTTTTGTGGCTTTGGTTTTAGTAAGTTGTTCAGTGAATTCTATATTGGCAATGGACTTGTCCTGTTTCTCTTATGCACTGCAATTCTGCATTTCACTATCAAAATGGTTTTATCTTGATCTTGAAATGTTGTTTTTTACTTGTAATTTGTGAATGAGTTTGACACTGCACCTCTGATCTTTTCATTAATGACAATGGTTGTTGTCCTATTTGGTGGACTTGATTGATGTTGGATGTTGTTATTTGAATTGTTTTTTTTTTTGAAGAATTTTCTGATTAAATGGTATATACAGTCTCTAATAGTTTGACAACTGATTGCTACATGTCAGAAGATTTTGATTATCTTACGATGAAGATTCCAACAATCTACTTATTGGATTGTACATTGAATGACTGCCATCTGGTACTGAAGTCAGTAGATCAGGTACTTGTGGATTTATACTTTCCAGGCCTCAATGTTCATTCTTGTTTTTATATTTATTATGGATATGGATTATTGCCACACTTTTTCTAAACAATATTGAGATTGCCAGTGGATTGTAAACATTTGACACTATACTTCCGAGTTGTACCTTTATTGTTGGGCATGGCCAAATGAAGATGATTGATTGTTAATTGTTACTTGTGTGAAAAGATTTTGCTATAACAACGGTATCAACAAAAGCTTTTTCCCACTGTACAGGGTTGATTGCATGAATCAAATGACACTTTAATGTCTCATCATAAAATAATGTCTAGTGAGTACTGAGTAGTGATAAATCATAAAATGACTATGTTTTAGCTATTTTTTTTAGAATATTGGACTAAAATGAATTTTGTGGTTTAAGCCAAAAACAAACAAAGAAGTTGGTCAGGCATGAATTAGGAGGCAAAAGCTATTTTTGAGTCTGGTTGTGTAGCAGTAACTGCTTGTACAACTGTTACTCATTTATGTCATTGTATTTTTATTAAGGGAGAAGTCTGAATATATTAGAAAAGAATTAGGCATAATTTAGTTGCATTGCAAAGACTAGAGGAACTTGAACATTGTTTTAAATTTTATATTCTTGTTATCAATATATATCAGGAAGAAATATGATGAATCTCATCTTCAATTTATTTGAAACATGCATCATAGATCTGAATGCAAGTAGTTGGTTGTTGGGCCTGTAAATTTGAAATTTATGCCGTGAAAAATGTTGATAATAGGCATTTGTTTATGATCTCTGTTAATAATGTTTGGTGTATGTTAAATATGCAGAGGGATGTTTATCCTGCACTGGTTTTATTTCCAGCAGAAAAGAAGGAACCTCTTCTTTATGAAGGAGATGTGGCTGTAGTTGATGTTATGAAGTTTGTAGCAGAACATGGAAATAACTTTAATCATCTTATCAAAGATAAAGGTAAACATTCATGTGATATAGCGTCTTTCTATGCACGTATTAGATTATTAGAAAGCATGTGAATAGTTTTTGTTGGTGTCAAACTTGGATCACAGACTTGTCATTACCACCATCCTTGTTTCCCAACCCTTTTTATTCCTGGTATCCATCCACTTGTGCAGGACTTGACTAGTGGAGTCAGACTCATAGTTTGTGTATCTTCTTTTGACTTATGCTTTTATCAGCAGATTATCCTGTAATTTCTTGTCTACTGTTCTGTCAAACCTAAACATTAATTATTAATCTAAATTCTTTCATGCATGATTCCTGTAGCAGTTCTGTGGCTGTCTGAAACAGTAATCAGGAATCAAAACTTACATGGTACTTTGCAACCTGACGTTCTTGAGGAATCACTTCATACACGGAACAAATATGATGGAGCCCTAGGTCAAGATAAAATACCGAATCAGGTGGTCGAACCTAACATGATAAATTTACCAGTATCAAATGGATGGCAAGAAACATTGCCTCATGTGGTGGTCGGTTCGGTGCTAATTGCCACAGAAAAGCTTTTGGGGGTTGAGCCATTTGGTGGATCCAAGATTCTCATTGTGGCAGCGGATCAAGCAACCGGATTTCAAGGTCTTATCATTAACAAGCATCTAAAATGGACTAACTTGGAAGAAGACTTGGAAAAATTGAAAGAGGCTCCTTTGTCCCTTGGGGGTCCAGTTGTGAAAACTGGAATGCCTCTTTTATCCTTAACCAGAACAGTTTCCGGATATAATTTACCTGAAATCCTACCTGGAATTTACTTCCTTGATTATGTAGTGACAACTAGTATAATCCAGAAGCTGAAATATGCAAAAGAACCAGTTGACAGCTACTGGTTTTTCTTCGGGTACTCAAATTGGGAATGGAATCAGTTGTATCATGAGATGGCAGAAGGAGCGTGGAATTTGAGTGAGGATGGAGCGAGACATTTACAATGGCCTTGA

Protein sequence

>MS.gene069754.t1

MCKVEHSTDKGFCEVPSLWEFSSVNDGRLGGFTDQNSHNLNPCSFEEFERFHSFYEKFMNAVKEFFLPSERHRFGLVSDRAMLSSLGVADSGSWFAVRYLAGCSSCSHILKEEDDLNYVLQRNNYFVKELEGNDHNQEATIPANKPSVLLFVDRSSDSSETRGKSMEALKALRVLAQHYHVNQIDTKNNGNHKKVSIRNYRGTKSTPDLLKSNSVMKAQKIKLNKKISSITIINEGKQVSVDNVAPDLQVSSLNELLSYIVQQKKDGKLSSLAKDLGFQLLSGDIDISSANTQQQLHSEVQSNQISAETSQEDHTGSTAMTEGYPYKSAVEPGKNPKLVVLSSQHEVKKSSIVTSEEIKAVKSEESIIDHGLPSAKIIQSEIDSSTDGSSDGNNNGKQDHFLGFNGSFFYSDGNYQLLERLTGTSRIPSLVIVDPFWQQHYVYPEEKSFNYASMYGFLSEFLNGTLVPYQLSEHVLQGQREAMRPPFVNLDFHEVDSIPRITSQAFSEFVIGFNRSNKENTSNAWNKDVLVLFSNSWCAFCQRMELIVREVYRAIKGHVDTLKGGSDNDFDYLTMKIPTIYLLDCTLNDCHLVLKSVDQRDVYPALVLFPAEKKEPLLYEGDVAVVDVMKFVAEHGNNFNHLIKDKAVLWLSETVIRNQNLHGTLQPDVLEESLHTRNKYDGALGQDKIPNQVVEPNMINLPVSNGWQETLPHVVVGSVLIATEKLLGVEPFGGSKILIVAADQATGFQGLIINKHLKWTNLEEDLEKLKEAPLSLGGPVVKTGMPLLSLTRTVSGYNLPEILPGIYFLDYVVTTSIIQKLKYAKEPVDSYWFFFGYSNWEWNQLYHEMAEGAWNLSEDGARHLQWP